@vitessce/all 3.5.8 → 3.5.10

package/dist/{index-1f21bfa0.js → index-7b4cc1b8.js}

@@ -1,4 +1,4 @@
-import { g as getDefaultExportFromCjs, R as Raycaster, O as OrthographicCamera, P as PerspectiveCamera, S as Scene, a as PCFSoftShadowMap, N as NoToneMapping, A as ACESFilmicToneMapping, V as Vector2, b as Vector3, L as Layers, T as Texture, c as RGBAFormat, U as UnsignedByteType, W as WebGLRenderer, C as Camera, B as BasicShadowMap, d as PCFShadowMap, e as VSMShadowMap, f as BufferGeometry, M as Material, h as Color, i as Clock, _ as _extends, j as THREE, G as Group, k as Matrix4, l as TrianglesDrawMode, m as TriangleFanDrawMode, n as TriangleStripDrawMode, o as REVISION, p as Ray$1, q as Plane, E as EventDispatcher, r as MOUSE, s as TOUCH, Q as Quaternion, t as Spherical, u as Loader, v as LoaderUtils, F as FileLoader, w as SpotLight, x as PointLight, D as DirectionalLight, y as MeshBasicMaterial, z as MeshPhysicalMaterial, I as InstancedMesh, H as Object3D, J as TextureLoader, K as ImageBitmapLoader, X as BufferAttribute, Y as InterleavedBuffer, Z as LinearFilter, $ as LinearMipmapLinearFilter, a0 as RepeatWrapping, a1 as PointsMaterial, a2 as LineBasicMaterial, a3 as MeshStandardMaterial, a4 as DoubleSide, a5 as PropertyBinding, a6 as SkinnedMesh, a7 as Mesh, a8 as LineSegments, a9 as Line$1, aa as LineLoop, ab as Points, ac as MathUtils, ad as Skeleton, ae as InterpolateLinear, af as AnimationClip, ag as Bone, ah as NearestFilter, ai as NearestMipmapNearestFilter, aj as LinearMipmapNearestFilter, ak as NearestMipmapLinearFilter, al as ClampToEdgeWrapping, am as MirroredRepeatWrapping, an as InterpolateDiscrete, ao as FrontSide, ap as InterleavedBufferAttribute, aq as VectorKeyframeTrack, ar as QuaternionKeyframeTrack, as as NumberKeyframeTrack, at as Box3, au as Sphere, av as Interpolant, aw as InstancedBufferGeometry, ax as Float32BufferAttribute, ay as InstancedInterleavedBuffer, az as WireframeGeometry, aA as ShaderMaterial, aB as UniformsUtils, aC as UniformsLib, aD as Vector4, aE as Line3, aF as SphereGeometry, aG as Triangle, aH as BackSide, aI as jsxRuntimeExports, aJ as Matrix3, aK as CoordinationType, aL as Data3DTexture, aM as RedFormat, aN as FloatType, aO as getImageSize } from "./index-ec9f6e92.js";
+import { g as getDefaultExportFromCjs, R as Raycaster, O as OrthographicCamera, P as PerspectiveCamera, S as Scene, a as PCFSoftShadowMap, N as NoToneMapping, A as ACESFilmicToneMapping, V as Vector2, b as Vector3, L as Layers, T as Texture, c as RGBAFormat, U as UnsignedByteType, W as WebGLRenderer, C as Camera, B as BasicShadowMap, d as PCFShadowMap, e as VSMShadowMap, f as BufferGeometry, M as Material, h as Color, i as Clock, _ as _extends, j as THREE, G as Group, k as Matrix4, l as TrianglesDrawMode, m as TriangleFanDrawMode, n as TriangleStripDrawMode, o as REVISION, p as Ray$1, q as Plane, E as EventDispatcher, r as MOUSE, s as TOUCH, Q as Quaternion, t as Spherical, u as Loader, v as LoaderUtils, F as FileLoader, w as SpotLight, x as PointLight, D as DirectionalLight, y as MeshBasicMaterial, z as MeshPhysicalMaterial, I as InstancedMesh, H as Object3D, J as TextureLoader, K as ImageBitmapLoader, X as BufferAttribute, Y as InterleavedBuffer, Z as LinearFilter, $ as LinearMipmapLinearFilter, a0 as RepeatWrapping, a1 as PointsMaterial, a2 as LineBasicMaterial, a3 as MeshStandardMaterial, a4 as DoubleSide, a5 as PropertyBinding, a6 as SkinnedMesh, a7 as Mesh, a8 as LineSegments, a9 as Line$1, aa as LineLoop, ab as Points, ac as MathUtils, ad as Skeleton, ae as InterpolateLinear, af as AnimationClip, ag as Bone, ah as NearestFilter, ai as NearestMipmapNearestFilter, aj as LinearMipmapNearestFilter, ak as NearestMipmapLinearFilter, al as ClampToEdgeWrapping, am as MirroredRepeatWrapping, an as InterpolateDiscrete, ao as FrontSide, ap as InterleavedBufferAttribute, aq as VectorKeyframeTrack, ar as QuaternionKeyframeTrack, as as NumberKeyframeTrack, at as Box3, au as Sphere, av as Interpolant, aw as InstancedBufferGeometry, ax as Float32BufferAttribute, ay as InstancedInterleavedBuffer, az as WireframeGeometry, aA as ShaderMaterial, aB as UniformsUtils, aC as UniformsLib, aD as Vector4, aE as Line3, aF as SphereGeometry, aG as Triangle, aH as BackSide, aI as jsxRuntimeExports, aJ as Matrix3, aK as CoordinationType, aL as Data3DTexture, aM as RedFormat, aN as FloatType, aO as getImageSize } from "./index-3f6eb63e.js";
 import * as React from "react";
 import React__default, { useReducer, useRef, useDebugValue, useEffect, useLayoutEffect, useState, useMemo, forwardRef } from "react";
 import "@vitessce/vit-s";
@@ -23800,7 +23800,7 @@ const Text = /* @__PURE__ */ React.forwardRef(({
   const {
     Text: TextMeshImpl,
     preloadFont
-  } = suspend(async () => import("./troika-three-text.esm-f2c32ddf.js"), []);
+  } = suspend(async () => import("./troika-three-text.esm-7f970761.js"), []);
   const invalidate2 = useThree(({
     invalidate: invalidate3
   }) => invalidate3);

package/dist/{index-2732b061.js → index-c358749f.js}

@@ -1,4 +1,4 @@
-import { aV as _export, aW as _coreExports, aX as _fails, aY as _toObject, aZ as _objectKeys, g as getDefaultExportFromCjs, a_ as _wksExports, a$ as _cof, b0 as _iterators, b1 as _anObject, b2 as _hide, b3 as _ctx, b4 as _toLength, b5 as _globalExports, b6 as _objectDp, b7 as _descriptors, b8 as _isObject, b9 as _metaExports, ba as _objectCreate, bb as _iterDefine, bc as _iterStep, bd as _isArray, be as _iobject, bf as _setToStringTag, bg as _aFunction, bh as _propertyDesc, bi as _root, bj as _baseGetTag, bk as isObjectLike_1, bl as isObject_1, bm as _Symbol$iterator, bn as _Object$assign, bo as _objectGopd, bp as _toIobject, bq as _html, br as _domCreate, bs as _library, bt as _Object$defineProperty, bu as _Symbol, bv as _objectPie, bw as _has, bx as _redefine, by as _objectAssign, aS as commonjsGlobal, bz as getAugmentedNamespace, bA as propTypesExports } from "./index-ec9f6e92.js";
+import { aV as _export, aW as _coreExports, aX as _fails, aY as _toObject, aZ as _objectKeys, g as getDefaultExportFromCjs, a_ as _wksExports, a$ as _cof, b0 as _iterators, b1 as _anObject, b2 as _hide, b3 as _ctx, b4 as _toLength, b5 as _globalExports, b6 as _objectDp, b7 as _descriptors, b8 as _isObject, b9 as _metaExports, ba as _objectCreate, bb as _iterDefine, bc as _iterStep, bd as _isArray, be as _iobject, bf as _setToStringTag, bg as _aFunction, bh as _propertyDesc, bi as _root, bj as _baseGetTag, bk as isObjectLike_1, bl as isObject_1, bm as _Symbol$iterator, bn as _Object$assign, bo as _objectGopd, bp as _toIobject, bq as _html, br as _domCreate, bs as _library, bt as _Object$defineProperty, bu as _Symbol, bv as _objectPie, bw as _has, bx as _redefine, by as _objectAssign, aS as commonjsGlobal, bz as getAugmentedNamespace, bA as propTypesExports } from "./index-3f6eb63e.js";
 import React__default from "react";
 function _mergeNamespaces(n, m) {
   for (var i = 0; i < m.length; i++) {

package/dist/index.js

@@ -1,4 +1,4 @@
-import { bM, bK, bI, bL, bJ, bH, bN } from "./index-ec9f6e92.js";
+import { bM, bK, bI, bL, bJ, bH, bN } from "./index-3f6eb63e.js";
 import { useComplexCoordination, useComplexCoordinationSecondary, useCoordination, useCoordinationScopes, useCoordinationScopesBy, useGridItemSize, useMultiCoordinationScopesNonNull, useMultiCoordinationScopesSecondaryNonNull, usePageModeView } from "@vitessce/vit-s";
 import "react";
 import "react-dom";

package/dist/{jpeg-71127875.js → jpeg-96ca6dfa.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-ec9f6e92.js";
+import { aP as BaseDecoder } from "./index-3f6eb63e.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{lerc-6b0aed4a.js → lerc-262d98f3.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-68f84e2a.js";
-import { g as getDefaultExportFromCjs, aP as BaseDecoder, aQ as LercParameters, aR as LercAddCompression } from "./index-ec9f6e92.js";
+import { g as getDefaultExportFromCjs, aP as BaseDecoder, aQ as LercParameters, aR as LercAddCompression } from "./index-3f6eb63e.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{lzw-d3000914.js → lzw-8adf7fb3.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-ec9f6e92.js";
+import { aP as BaseDecoder } from "./index-3f6eb63e.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{packbits-8ca42840.js → packbits-b963b38b.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-ec9f6e92.js";
+import { aP as BaseDecoder } from "./index-3f6eb63e.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{raw-8cc54eb3.js → raw-27b6a685.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-ec9f6e92.js";
+import { aP as BaseDecoder } from "./index-3f6eb63e.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{troika-three-text.esm-f2c32ddf.js → troika-three-text.esm-7f970761.js}

@@ -1,4 +1,4 @@
-import { aB as UniformsUtils, bB as MeshDepthMaterial, bC as RGBADepthPacking, bD as MeshDistanceMaterial, bE as ShaderChunk, T as Texture, Z as LinearFilter, aw as InstancedBufferGeometry, au as Sphere, at as Box3, aH as BackSide, a4 as DoubleSide, bF as InstancedBufferAttribute, V as Vector2, aD as Vector4, h as Color, aJ as Matrix3, a7 as Mesh, ao as FrontSide, bG as PlaneGeometry, f as BufferGeometry, ax as Float32BufferAttribute, y as MeshBasicMaterial, k as Matrix4, b as Vector3 } from "./index-ec9f6e92.js";
+import { aB as UniformsUtils, bB as MeshDepthMaterial, bC as RGBADepthPacking, bD as MeshDistanceMaterial, bE as ShaderChunk, T as Texture, Z as LinearFilter, aw as InstancedBufferGeometry, au as Sphere, at as Box3, aH as BackSide, a4 as DoubleSide, bF as InstancedBufferAttribute, V as Vector2, aD as Vector4, h as Color, aJ as Matrix3, a7 as Mesh, ao as FrontSide, bG as PlaneGeometry, f as BufferGeometry, ax as Float32BufferAttribute, y as MeshBasicMaterial, k as Matrix4, b as Vector3 } from "./index-3f6eb63e.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{webimage-88dacd24.js → webimage-55725738.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-ec9f6e92.js";
+import { aP as BaseDecoder } from "./index-3f6eb63e.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist-tsc/base-plugins.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"base-plugins.d.ts","sourceRoot":"","sources":["../src/base-plugins.ts"],"names":[],"mappings":"AAWA,OAAO,EACL,cAAc,EACd,mBAAmB,EACnB,cAAc,EACd,sBAAsB,EACtB,mBAAmB,EACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,KAAK,EACV,UAAU,EACV,UAAU,EACX,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACL,CAAC,EAkDF,MAAM,mBAAmB,CAAC;AAuK3B,eAAO,MAAM,aAAa,kBA8BzB,CAAC;AAEF,eAAO,MAAM,aAAa,wDA2EzB,CAAC;AAEF,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;yBA2ET,CAAC;gCAEL,CAAC;;;yBAGK,CAAC;gCAEE,CAAC;;;;;;;;;iBAMgB,CAAC;;;;iBAC0C,CAAC;;;;;;;YAO3E,CAAC;;;YAAmE,CAAC;;;;;;;YAMhB,CAAC;;;YACrD,CAAC;;;;;;;YAOX,CAAA;;;YAGE,CAAH;;;;;;;;;;;;;;YAUoC,CAAC;;;YAC5B,CAAC;;;;;;;;YAUiC,CAAC;;;;YAC3C,CAAC;;;;;;;;;;;;;;;;;;;;;;;;yBAiB8B,CAAC;gCAI9B,CAAA;;;;;iBAMkC,CAAC;;;;YAK3B,CAAC;;;;YAIZ,CAAC;;;;YAGS,CAAC;;;;;;;YAOW,CAAC;;;;YACqB,CAAC;;;;;;;;;;;;;;;;;;;;yBAKjB,CAAC;gCAC9B,CAAD;;;;;iBAC4E,CAAC;;;;YACG,CAAC;;;;YACD,CAAC;;;;YACA,CAAC;;;;;;;YAEvC,CAAC;;;;YACK,CAAC;;;;;;;;;;;wBAoEkvB,CAAC;;;wBAA6E,CAAC;;;;;;;;iBAA8Q,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;yBAAkZ,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;yBAA8E,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;;;;;iBAAgR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;;;qBAAygB,CAAC;;;;qBAA2J,CAAC;;;;;;qBAAsN,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;qBAA0K,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;wBAAwL,CAAC;;;;iBAA+F,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;wBAAqJ,CAAC;;;;iBAA+F,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBA/gB9mL,CAAC;;;;;qBAGU,CAAC;qBAA4C,CAAC;;;;;;;;;qBAIlD,CAAC;6BACZ,CAAA;;sBAEa,CAAC;;;;;qBAOY,CAAC;qBACK,CAAC;;;;;;;;;qBAa/B,CAAC;6BAEH,CAAC;;;;;;;;;;;;;kBAwBC,CAAC;mBACO,CAAC;gBAEH,CAAC;gBAEd,CAAF;uBACY,CAAC;iBAEX,CAAC;oBACY,CAAC;oBAEb,CAAC;qBACQ,CAAC;;kBAER,CAAC;mBAEC,CAAC;gBAGK,CAAC;gBACA,CAAC;uBAGV,CAAC;iBAGI,CAAC;oBAET,CAAA;oBACgB,CAAC;qBAEV,CAAC;;;;;;gBAMqB,CAAC;sBAE1B,CAAC;;;;;qBAWK,CAAC;qBAEX,CAAD;;;;;;;;;qBAUsB,CAAC;6BAEX,CAAC;;mBAGC,CAAC;kBACR,CAAC;mBAED,CAAC;gBAEQ,CAAC;gBAEF,CAAC;uBAEP,CAAA;iBAAuC,CAAC;oBACd,CAAC;oBACZ,CAAC;qBAA2C,CAAC;;;;;;gBAGiC,CAAC;sBAA0B,CAAC;;;;;qBAGlF,CAAC;qBACxC,CAAC;;;;;;;;;qBAGD,CAAC;6BAAoD,CAAC;;mBACrC,CAAC;kBAAsB,CAAC;mBACtB,CAAC;gBACtB,CAAF;gBACM,CAAC;uBACmB,CAAC;iBAAuC,CAAC;oBAA0C,CAAC;oBAKhG,CAAC;qBACY,CAAC;;;;;;;;;gBAGqB,CAAC;sBACrD,CAAC;;;;;qBAGmC,CAAC;qBACT,CAAC;;;;;;;;;qBAIjB,CAAC;6BAAoD,CAAC;;mBAC9B,CAAC;kBAAsB,CAAC;mBAC3B,CAAC;gBAC9B,CAAC;gBAAsC,CAAC;uBACxB,CAAC;iBACP,CAAC;oBAA0C,CAAC;oBAC3B,CAAA;qBACX,CAAC;;;;;;;;;;;gBAIF,CAAC;sBAA0B,CAAC;;;;;qBAGS,CAAC;qBACtC,CAAC;;;;;;;;;qBAMH,CAAC;6BAAoD,CAAC;;mBACzC,CAAC;kBAAsB,CAAC;mBAAyC,CAAC;gBAC1E,CAAC;gBAAsC,CAAC;uBAC/D,CAAA;iBAAuC,CAAC;oBAA0C,CAAC;oBACvE,CAAC;qBAA2C,CAAC;;;;;;;;;;;;;;OAwF1D,CAAC;AAIF,eAAO,MAAM,qBAAqB;;;;;;;;aA9VtB,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cAEF,CAAD;eAEU,CAAC;;;;;;;;;;;;;;;;;;;aAiB0B,CAAC;cACjB,CAAC;eAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;aAlEnD,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAgCd,CAAC;cAEF,CAAD;eAEU,CAAC;;;;;;;;;;;;;;;;;;;aAiB0B,CAAC;cACjB,CAAC;eAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;kzBAsgB9D,CAAC;AAEF,eAAO,MAAM,kBAAkB,uBAK9B,CAAC"}

package/dist-tsc/base-plugins.js

@@ -16,7 +16,7 @@ import { LinkControllerSubscriber } from '@vitessce/link-controller';
 import { StatusSubscriber } from '@vitessce/status';
 import { HiGlassSubscriber, GenomicProfilesSubscriber } from '@vitessce/genomic-profiles';
 import { NeuroglancerSubscriber } from '@vitessce/neuroglancer';
-import { CellSetExpressionPlotSubscriber, CellSetSizesPlotSubscriber, ExpressionHistogramSubscriber, DotPlotSubscriber, FeatureBarPlotSubscriber, TreemapSubscriber, VolcanoPlotSubscriber, CellSetCompositionBarPlotSubscriber, FeatureSetEnrichmentBarPlotSubscriber, } from '@vitessce/statistical-plots';
+import { CellSetExpressionPlotSubscriber, CellSetSizesPlotSubscriber, ExpressionHistogramSubscriber, DotPlotSubscriber, FeatureBarPlotSubscriber, TreemapSubscriber, VolcanoPlotSubscriber, FeatureStatsTableSubscriber, CellSetCompositionBarPlotSubscriber, FeatureSetEnrichmentBarPlotSubscriber, } from '@vitessce/statistical-plots';
 // Register file type plugins
 import { 
 // CSV
@@ -41,7 +41,7 @@ SpatialDataTableSource, SpatialDataShapesSource, SpatialDataImageLoader, Spatial
 import { OmeTiffAsObsSegmentationsLoader, OmeTiffLoader, OmeTiffSource, } from '@vitessce/ome-tiff';
 import { GlbSource, GlbLoader, } from '@vitessce/glb';
 // Joint file types
-import { BiomarkerSelectSubscriber, ComparativeHeadingSubscriber, autocompleteFeature, transformFeature, getAlternativeTerms, getTermMapping, } from '@vitessce/biomarker-select';
+import { BiomarkerSelectSubscriber, ComparativeHeadingSubscriber, SampleSetPairManagerSubscriber, autocompleteFeature, transformFeature, getAlternativeTerms, getTermMapping, } from '@vitessce/biomarker-select';
 import { expandAnndataZarr, expandSpatialdataZarr, } from './joint-file-types.js';
 import { expandAnndataCellSetsZarr, expandAnndataCellsZarr, expandAnndataExpressionMatrixZarr, expandCellSetsJson, expandCellsJson, expandClustersJson, expandExpressionMatrixZarr, expandGenesJson, expandMoleculesJson, expandRasterJson, expandRasterOmeZarr, } from './joint-file-types-legacy.js';
 // Biomarker select UI and default async functions.
@@ -86,11 +86,13 @@ export const baseViewTypes = [
     makeViewType(ViewType.GENOMIC_PROFILES, GenomicProfilesSubscriber),
     makeViewType(ViewType.DOT_PLOT, DotPlotSubscriber),
     makeViewType(ViewType.VOLCANO_PLOT, VolcanoPlotSubscriber),
+    makeViewType(ViewType.FEATURE_STATS_TABLE, FeatureStatsTableSubscriber),
     makeViewType(ViewType.BIOMARKER_SELECT, BiomarkerSelectSubscriber),
     makeViewType(ViewType.LINK_CONTROLLER, LinkControllerSubscriber),
     makeViewType(ViewType.NEUROGLANCER, NeuroglancerSubscriber),
     makeViewType(ViewType.TREEMAP, TreemapSubscriber),
     makeViewType(ViewType.COMPARATIVE_HEADING, ComparativeHeadingSubscriber),
+    makeViewType(ViewType.SAMPLE_SET_PAIR_MANAGER, SampleSetPairManagerSubscriber),
     makeViewType(ViewType.OBS_SET_COMPOSITION_BAR_PLOT, CellSetCompositionBarPlotSubscriber),
     makeViewType(ViewType.FEATURE_SET_ENRICHMENT_BAR_PLOT, FeatureSetEnrichmentBarPlotSubscriber),
 ];
@@ -326,7 +328,7 @@ export const baseCoordinationTypes = [
     new PluginCoordinationType(CoordinationType.CONTOUR_COLOR, null, rgbArray.nullable()),
     new PluginCoordinationType(CoordinationType.HIERARCHY_LEVELS, null, z.array(z.enum(['sampleSet', 'obsSet'])).nullable()),
     // For volcano plot:
-    new PluginCoordinationType(CoordinationType.FEATURE_POINT_SIGNIFICANCE_THRESHOLD, 0.05, z.number().nullable()),
+    new PluginCoordinationType(CoordinationType.FEATURE_POINT_SIGNIFICANCE_THRESHOLD, 0.01, z.number().nullable()),
     new PluginCoordinationType(CoordinationType.FEATURE_LABEL_SIGNIFICANCE_THRESHOLD, 0.01, z.number().nullable()),
     new PluginCoordinationType(CoordinationType.FEATURE_POINT_FOLD_CHANGE_THRESHOLD, 1.0, z.number().nullable()),
     new PluginCoordinationType(CoordinationType.FEATURE_LABEL_FOLD_CHANGE_THRESHOLD, 5.0, z.number().nullable()),

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/all",
-  "version": "3.5.8",
+  "version": "3.5.10",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -18,35 +18,35 @@
   "dependencies": {
     "@material-ui/core": "~4.12.3",
     "zod": "^3.21.4",
-    "@vitessce/constants-internal": "3.5.8",
-    "@vitessce/abstract": "3.5.8",
-    "@vitessce/csv": "3.5.8",
-    "@vitessce/description": "3.5.8",
-    "@vitessce/feature-list": "3.5.8",
-    "@vitessce/genomic-profiles": "3.5.8",
-    "@vitessce/heatmap": "3.5.8",
-    "@vitessce/glb": "3.5.8",
-    "@vitessce/json": "3.5.8",
-    "@vitessce/layer-controller": "3.5.8",
-    "@vitessce/layer-controller-beta": "3.5.8",
-    "@vitessce/obs-sets-manager": "3.5.8",
-    "@vitessce/ome-tiff": "3.5.8",
-    "@vitessce/link-controller": "3.5.8",
-    "@vitessce/plugins": "3.5.8",
-    "@vitessce/scatterplot-embedding": "3.5.8",
-    "@vitessce/scatterplot-gating": "3.5.8",
-    "@vitessce/schemas": "3.5.8",
-    "@vitessce/spatial": "3.5.8",
-    "@vitessce/spatial-beta": "3.5.8",
-    "@vitessce/statistical-plots": "3.5.8",
-    "@vitessce/vit-s": "3.5.8",
-    "@vitessce/status": "3.5.8",
-    "@vitessce/zarr": "3.5.8",
-    "@vitessce/globals": "3.5.8",
-    "@vitessce/spatial-zarr": "3.5.8",
-    "@vitessce/spatial-three": "3.5.8",
-    "@vitessce/biomarker-select": "3.5.8",
-    "@vitessce/neuroglancer": "3.5.8"
+    "@vitessce/constants-internal": "3.5.10",
+    "@vitessce/abstract": "3.5.10",
+    "@vitessce/csv": "3.5.10",
+    "@vitessce/description": "3.5.10",
+    "@vitessce/feature-list": "3.5.10",
+    "@vitessce/genomic-profiles": "3.5.10",
+    "@vitessce/heatmap": "3.5.10",
+    "@vitessce/glb": "3.5.10",
+    "@vitessce/json": "3.5.10",
+    "@vitessce/layer-controller": "3.5.10",
+    "@vitessce/layer-controller-beta": "3.5.10",
+    "@vitessce/link-controller": "3.5.10",
+    "@vitessce/obs-sets-manager": "3.5.10",
+    "@vitessce/ome-tiff": "3.5.10",
+    "@vitessce/plugins": "3.5.10",
+    "@vitessce/scatterplot-embedding": "3.5.10",
+    "@vitessce/scatterplot-gating": "3.5.10",
+    "@vitessce/schemas": "3.5.10",
+    "@vitessce/spatial": "3.5.10",
+    "@vitessce/spatial-beta": "3.5.10",
+    "@vitessce/statistical-plots": "3.5.10",
+    "@vitessce/status": "3.5.10",
+    "@vitessce/vit-s": "3.5.10",
+    "@vitessce/zarr": "3.5.10",
+    "@vitessce/globals": "3.5.10",
+    "@vitessce/spatial-zarr": "3.5.10",
+    "@vitessce/spatial-three": "3.5.10",
+    "@vitessce/biomarker-select": "3.5.10",
+    "@vitessce/neuroglancer": "3.5.10"
   },
   "devDependencies": {
     "@types/react": "^18.0.28",

package/src/base-plugins.ts

@@ -99,6 +99,7 @@ import {
   FeatureBarPlotSubscriber,
   TreemapSubscriber,
   VolcanoPlotSubscriber,
+  FeatureStatsTableSubscriber,
   CellSetCompositionBarPlotSubscriber,
   FeatureSetEnrichmentBarPlotSubscriber,
 } from '@vitessce/statistical-plots';
@@ -189,6 +190,7 @@ import {
 import {
   BiomarkerSelectSubscriber,
   ComparativeHeadingSubscriber,
+  SampleSetPairManagerSubscriber,
   autocompleteFeature,
   transformFeature,
   getAlternativeTerms,
@@ -257,11 +259,13 @@ export const baseViewTypes = [
   makeViewType(ViewType.GENOMIC_PROFILES, GenomicProfilesSubscriber),
   makeViewType(ViewType.DOT_PLOT, DotPlotSubscriber),
   makeViewType(ViewType.VOLCANO_PLOT, VolcanoPlotSubscriber),
+  makeViewType(ViewType.FEATURE_STATS_TABLE, FeatureStatsTableSubscriber),
   makeViewType(ViewType.BIOMARKER_SELECT, BiomarkerSelectSubscriber),
   makeViewType(ViewType.LINK_CONTROLLER, LinkControllerSubscriber),
   makeViewType(ViewType.NEUROGLANCER, NeuroglancerSubscriber),
   makeViewType(ViewType.TREEMAP, TreemapSubscriber),
   makeViewType(ViewType.COMPARATIVE_HEADING, ComparativeHeadingSubscriber),
+  makeViewType(ViewType.SAMPLE_SET_PAIR_MANAGER, SampleSetPairManagerSubscriber),
   makeViewType(ViewType.OBS_SET_COMPOSITION_BAR_PLOT, CellSetCompositionBarPlotSubscriber),
   makeViewType(ViewType.FEATURE_SET_ENRICHMENT_BAR_PLOT, FeatureSetEnrichmentBarPlotSubscriber),
 ];
@@ -594,7 +598,7 @@ export const baseCoordinationTypes = [
   new PluginCoordinationType(CoordinationType.CONTOUR_COLOR, null, rgbArray.nullable()),
   new PluginCoordinationType(CoordinationType.HIERARCHY_LEVELS, null, z.array(z.enum(['sampleSet', 'obsSet'])).nullable()),
   // For volcano plot:
-  new PluginCoordinationType(CoordinationType.FEATURE_POINT_SIGNIFICANCE_THRESHOLD, 0.05, z.number().nullable()),
+  new PluginCoordinationType(CoordinationType.FEATURE_POINT_SIGNIFICANCE_THRESHOLD, 0.01, z.number().nullable()),
   new PluginCoordinationType(CoordinationType.FEATURE_LABEL_SIGNIFICANCE_THRESHOLD, 0.01, z.number().nullable()),
   new PluginCoordinationType(CoordinationType.FEATURE_POINT_FOLD_CHANGE_THRESHOLD, 1.0, z.number().nullable()),
   new PluginCoordinationType(CoordinationType.FEATURE_LABEL_FOLD_CHANGE_THRESHOLD, 5.0, z.number().nullable()),