@vitessce/all 3.5.2 → 3.5.3

package/dist/index.js

@@ -1,4 +1,4 @@
-import { b4, b2, b0, b3, b1, a$, b5 } from "./index-c30aae4a.js";
+import { b4, b2, b0, b3, b1, a$, b5 } from "./index-dc203bad.js";
 import { useComplexCoordination, useComplexCoordinationSecondary, useCoordination, useCoordinationScopes, useCoordinationScopesBy, useGridItemSize, useMultiCoordinationScopesNonNull, useMultiCoordinationScopesSecondaryNonNull, usePageModeView } from "@vitessce/vit-s";
 import "react";
 import "react-dom";

package/dist/{jpeg-b2b6c7ce.js → jpeg-6913d838.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-c30aae4a.js";
+import { aP as BaseDecoder } from "./index-dc203bad.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{lerc-2de15a45.js → lerc-2ae4c8b1.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-68f84e2a.js";
-import { g as getDefaultExportFromCjs, aP as BaseDecoder, aQ as LercParameters, aR as LercAddCompression } from "./index-c30aae4a.js";
+import { g as getDefaultExportFromCjs, aP as BaseDecoder, aQ as LercParameters, aR as LercAddCompression } from "./index-dc203bad.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{lzw-c0a4890e.js → lzw-7e42bec6.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-c30aae4a.js";
+import { aP as BaseDecoder } from "./index-dc203bad.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{packbits-ed55cab4.js → packbits-a844ba19.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-c30aae4a.js";
+import { aP as BaseDecoder } from "./index-dc203bad.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{raw-6ff50230.js → raw-18b5ff5d.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-c30aae4a.js";
+import { aP as BaseDecoder } from "./index-dc203bad.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{troika-three-text.esm-8c340833.js → troika-three-text.esm-9d990984.js}

@@ -1,4 +1,4 @@
-import { aB as UniformsUtils, aV as MeshDepthMaterial, aW as RGBADepthPacking, aX as MeshDistanceMaterial, aY as ShaderChunk, T as Texture, Z as LinearFilter, aw as InstancedBufferGeometry, au as Sphere, at as Box3, aH as BackSide, a4 as DoubleSide, aZ as InstancedBufferAttribute, V as Vector2, aD as Vector4, h as Color, aJ as Matrix3, a7 as Mesh, ao as FrontSide, a_ as PlaneGeometry, f as BufferGeometry, ax as Float32BufferAttribute, y as MeshBasicMaterial, k as Matrix4, b as Vector3 } from "./index-c30aae4a.js";
+import { aB as UniformsUtils, aV as MeshDepthMaterial, aW as RGBADepthPacking, aX as MeshDistanceMaterial, aY as ShaderChunk, T as Texture, Z as LinearFilter, aw as InstancedBufferGeometry, au as Sphere, at as Box3, aH as BackSide, a4 as DoubleSide, aZ as InstancedBufferAttribute, V as Vector2, aD as Vector4, h as Color, aJ as Matrix3, a7 as Mesh, ao as FrontSide, a_ as PlaneGeometry, f as BufferGeometry, ax as Float32BufferAttribute, y as MeshBasicMaterial, k as Matrix4, b as Vector3 } from "./index-dc203bad.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{webimage-16c00be5.js → webimage-e4bfacda.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-c30aae4a.js";
+import { aP as BaseDecoder } from "./index-dc203bad.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist-tsc/base-plugins.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"base-plugins.d.ts","sourceRoot":"","sources":["../src/base-plugins.ts"],"names":[],"mappings":"AAWA,OAAO,EACL,cAAc,EACd,mBAAmB,EACnB,cAAc,EACd,sBAAsB,EACtB,mBAAmB,EACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,KAAK,EACV,UAAU,EACV,UAAU,EACX,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACL,CAAC,EA6CF,MAAM,mBAAmB,CAAC;AAgJ3B,eAAO,MAAM,aAAa,kBAoBzB,CAAC;AAEF,eAAO,MAAM,aAAa,wDAqEzB,CAAC;AAEF,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;yBAoD+B,CAAC;gCAC/B,CAAC;;;yBAC/B,CAAA;gCAAsD,CAAC;;;;;;;;;iBAIf,CAAC;;;;iBAC6C,CAAC;;;;;;;YAG3C,CAAC;;;YAC1B,CAAC;;;;;;;YAEuC,CAAC;;;YAC/B,CAAC;;;;;;;YAQ7B,CAAC;;;YACqC,CAAC;;;;;;;;;;;;;;YAYxC,CAAD;;;YAAmE,CAAC;;;;;;;;YAMjE,CAAH;;;;YAG2B,CAAC;;;;;;;;;;;;;;;;;;;;;;;;yBAkBC,CAAC;gCAAsD,CAAC;;;;;iBAG7D,CAAC;;;;YAKtB,CAAJ;;;;YAEuC,CAAC;;;;YAIpC,CAAH;;;;;;;YAQqB,CAAC;;;;YAKF,CAAC;;;;;;;;;;;;;;;;;;;;yBAiBlB,CAAA;gCAGY,CAAC;;;;;iBAES,CAAC;;;;YACG,CAAC;;;;YACI,CAAC;;;;YACF,CAAC;;;;;;;YAElB,CAAC;;;;YACU,CAAC;;;;;;;;;;;wBA4DglD,CAAC;;;wBAA6E,CAAC;;;;;;;;iBAA8Q,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;yBAAkZ,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;yBAA8E,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;;;;;iBAAgR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;;;qBAAygB,CAAC;;;;qBAA2J,CAAC;;;;;;qBAAsN,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;qBAA0K,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;wBAAwL,CAAC;;;;iBAA+F,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;wBAAqJ,CAAC;;;;iBAA+F,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBAtcr7M,CAAC;;;;;qBAEmE,CAAC;qBAExD,CAAC;;;;;;;;;qBAYtB,CAAC;6BAEM,CAAC;;sBAGV,CAAD;;;;;qBAWC,CADC;qBAEK,CAAC;;;;;;;;;qBAOH,CAAC;6BACe,CAAC;;;;;;;;;;;;;kBAyBC,CAAC;mBAEf,CAAC;gBAGP,CAAC;gBACA,CAAC;uBACgB,CAAC;iBAEK,CAAC;oBAG3B,CAAC;oBAEI,CAAC;qBAKR,CADC;;kBAEwB,CAAC;mBAEX,CAAC;gBAGd,CAAA;gBACiB,CAAC;uBAGlB,CAAF;iBACU,CAAC;oBACgB,CAAC;oBAEjB,CAAC;qBAEE,CAAC;;;;;;gBAOP,CAAC;sBAA0B,CAAC;;;;;qBAIsC,CAAC;qBAG1D,CAAC;;;;;;;;;qBACsE,CAAC;6BAEvD,CAAA;;mBACpB,CAAC;kBAAuB,CAAA;mBAAyC,CAAC;gBAAmD,CAAC;gBAAsC,CAAC;uBAC3I,CAAC;iBAEvB,CAAC;oBAA0C,CAAC;oBAA0C,CAAC;qBAC1D,CAAC;;;;;;gBAGlC,CAAD;sBACC,CAAA;;;;;qBAMgC,CAAC;qBACjB,CAAC;;;;;;;;;qBAIU,CAAC;6BACV,CAAC;;mBACW,CAAC;kBAAsB,CAAC;mBACrB,CAAC;gBACnB,CAAC;gBAAsC,CAAC;uBAClC,CAAC;iBACZ,CAAC;oBAA2C,CAAA;oBACpD,CAAC;qBAA2C,CAAC;;;;;;;;;gBAInD,CAAC;sBAA0B,CAAC;;;;;qBAO5B,CADC;qBACoB,CAAC;;;;;;;;;qBAEe,CAAC;6BAAoD,CAAC;;mBAC7C,CAAC;kBAAsB,CAAC;mBACtE,CAAD;gBAAmD,CAAC;gBAAsC,CAAC;uBAChF,CAAC;iBAAuC,CAAC;oBAA0C,CAAC;oBACvE,CAAC;qBAA2C,CAAC;;;;;;;;;;;gBAEkB,CAAC;sBAA0B,CAAC;;;;;qBAGpE,CAAC;qBAA4C,CAAC;;;;;;;;;qBAGjB,CAAC;6BAAoD,CAAC;;mBAC1F,CAAC;kBAAsB,CAAC;mBAAyC,CAAC;gBACvF,CAAC;gBAAsC,CAAC;uBAA6C,CAAC;iBACvG,CAAC;oBAA0C,CAAC;oBAA0C,CAAC;qBAA2C,CAAC;;;;;;;;;;;;;;OAqErI,CAAC;AAIF,eAAO,MAAM,qBAAqB;;;;;;;;aAlTtB,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAmCd,CAAC;cACqB,CAAC;eAGnB,CAAA;;;;;;;;;;;;;;;;;;;aASgC,CAAC;cAAsC,CAAC;eAC1C,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;aA7D1B,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAmCd,CAAC;cACqB,CAAC;eAGnB,CAAA;;;;;;;;;;;;;;;;;;;aASgC,CAAC;cAAsC,CAAC;eAC1C,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;4hBA+brC,CAAC;AAEF,eAAO,MAAM,kBAAkB,uBAG9B,CAAC"}
+{"version":3,"file":"base-plugins.d.ts","sourceRoot":"","sources":["../src/base-plugins.ts"],"names":[],"mappings":"AAWA,OAAO,EACL,cAAc,EACd,mBAAmB,EACnB,cAAc,EACd,sBAAsB,EACtB,mBAAmB,EACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,KAAK,EACV,UAAU,EACV,UAAU,EACX,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACL,CAAC,EA6CF,MAAM,mBAAmB,CAAC;AAuJ3B,eAAO,MAAM,aAAa,kBAqBzB,CAAC;AAEF,eAAO,MAAM,aAAa,wDAqEzB,CAAC;AAEF,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;yBAkDf,CAAC;gCAAsD,CAAC;;;yBACf,CAAC;gCAC9B,CAAC;;;;;;;;;iBAIzB,CAAC;;;;iBACgD,CAAC;;;;;;;YAG7C,CAAC;;;YAAmE,CAAC;;;;;;;YAGhD,CAAC;;;YAC7B,CAAA;;;;;;;YAEyC,CAAC;;;YACjC,CAAC;;;;;;;;;;;;;;YAiBC,CAAC;;;YACX,CAAC;;;;;;;;YAGyC,CAAC;;;;YACC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;yBAoBjC,CAAC;gCAEZ,CAAJ;;;;;iBAG4B,CAAC;;;;YACP,CAAC;;;;YACA,CAAC;;;;YAKtB,CAAA;;;;;;;YAME,CAAH;;;;YAIa,CAAC;;;;;;;;;;;;;;;;;;;;yBAkBK,CAAC;gCAGhB,CAAC;;;;;iBAMF,CAAF;;;;YAGoD,CAAC;;;;YACiB,CAAC;;;;YAEvE,CAAC;;;;;;;YACyE,CAAC;;;;YACD,CAAC;;;;;;;;;;;wBAiEypC,CAAC;;;wBAA6E,CAAC;;;;;;;;iBAA8Q,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;yBAAkZ,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;yBAA8E,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;;;;;iBAAgR,CAAC;wBAA8C,CAAC;;;iBAAsE,CAAC;wBAA8C,CAAC;;;;;;;;;;;;qBAAygB,CAAC;;;;qBAA2J,CAAC;;;;;;qBAAsN,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;qBAA0K,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;wBAAwL,CAAC;;;;iBAA+F,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;wBAAqJ,CAAC;;;;iBAA+F,CAAC;wBAA8C,CAAC;;;;yBAAiH,CAAC;gCAAsD,CAAC;cAAoC,CAAC;wBAA8C,CAAC;;;;iBAAiG,CAAC;wBAA8C,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBAhd9iM,CAAC;;;;;qBAGH,CAAC;qBAA6C,CAAA;;;;;;;;;qBASzC,CAAC;6BAIT,CAAC;;sBAGN,CAAF;;;;;qBASW,CAAC;qBAEgB,CAAC;;;;;;;;;qBASvB,CAAC;6BACmB,CAAC;;;;;;;;;;;;;kBAwBb,CAAC;mBAIH,CAAC;gBAED,CAAC;gBAEL,CAAC;uBAEP,CAAA;iBACY,CAAC;oBAEf,CAAC;oBAGC,CAAD;qBACQ,CAAC;;kBAGV,CAAC;mBAGM,CAAC;gBAIH,CAAC;gBACS,CAAC;uBAEE,CAAC;iBAEF,CAAC;oBAEJ,CAAC;oBAEJ,CAAC;qBAEE,CAAC;;;;;;gBAMP,CAAC;sBACJ,CAAC;;;;;qBAQuB,CAAC;qBACZ,CAAC;;;;;;;;;qBAIyF,CAAC;6BAAoD,CAAC;;mBAC/G,CAAC;kBAAsB,CAAC;mBAEnE,CAAC;gBAAmD,CAAC;gBAC9C,CAAC;uBAA6C,CAAC;iBAAuC,CAAC;oBAA0C,CAAC;oBAC9I,CAAC;qBAA2C,CAAC;;;;;;gBAG5B,CAAC;sBAA0B,CAAC;;;;;qBAII,CAAC;qBAA6C,CAAA;;;;;;;;;qBAQ9C,CAAC;6BAClB,CAAC;;mBACa,CAAC;kBAC/B,CAAC;mBAClB,CAAF;gBAAmD,CAAC;gBACd,CAAA;uBACjB,CAAC;iBAAuC,CAAC;oBAC5B,CAAC;oBAA0C,CAAC;qBACpC,CAAC;;;;;;;;;gBAGA,CAAC;sBAA0B,CAAC;;;;;qBAIjE,CAAC;qBAA4C,CAAC;;;;;;;;;qBAON,CAAC;6BAAoD,CAAC;;mBACzC,CAAC;kBAAsB,CAAC;mBACjF,CAAF;gBAAmD,CAAC;gBAAsC,CAAC;uBAChE,CAAC;iBAAuC,CAAC;oBAA0C,CAAC;oBACvE,CAAC;qBAA2C,CAAC;;;;;;;;;;;gBAEmC,CAAC;sBACpG,CAAC;;;;;qBACyE,CAAA;qBACzE,CAAC;;;;;;;;;qBAGN,CAAA;6BACwB,CAAC;;mBAAgE,CAAC;kBAAsB,CAAC;mBAC7F,CAAC;gBAAmD,CAAC;gBAAsC,CAAC;uBAC7G,CAAC;iBAAuC,CAAC;oBAA0C,CAAC;oBAChG,CAAC;qBAA2C,CAAC;;;;;;;;;;;;;;OAsEpD,CAAC;AAIF,eAAO,MAAM,qBAAqB;;;;;;;;aA1TtB,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAmCd,CAAC;cACqB,CAAC;eAGnB,CAAA;;;;;;;;;;;;;;;;;;;aASgC,CAAC;cAAsC,CAAC;eAC1C,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;aA7D1B,CAAC;cAGX,CAAD;eAES,CAAC;;;aAIH,CAAC;cAEP,CAAF;eACgB,CAAC;;;;;;;;;;;;;;;;;;;aAmCd,CAAC;cACqB,CAAC;eAGnB,CAAA;;;;;;;;;;;;;;;;;;;aASgC,CAAC;cAAsC,CAAC;eAC1C,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;4hBAucrC,CAAC;AAEF,eAAO,MAAM,kBAAkB,uBAK9B,CAAC"}

package/dist-tsc/base-plugins.js

@@ -12,6 +12,7 @@ import { HeatmapSubscriber } from '@vitessce/heatmap';
 import { FeatureListSubscriber } from '@vitessce/feature-list';
 import { LayerControllerSubscriber } from '@vitessce/layer-controller';
 import { LayerControllerBetaSubscriber } from '@vitessce/layer-controller-beta';
+import { LinkControllerSubscriber } from '@vitessce/link-controller';
 import { StatusSubscriber } from '@vitessce/status';
 import { HiGlassSubscriber, GenomicProfilesSubscriber } from '@vitessce/genomic-profiles';
 import { CellSetExpressionPlotSubscriber, CellSetSizesPlotSubscriber, ExpressionHistogramSubscriber, DotPlotSubscriber, FeatureBarPlotSubscriber, } from '@vitessce/statistical-plots';
@@ -29,16 +30,17 @@ import {
 AnnDataSource, ObsFeatureMatrixAnndataLoader, ObsFeatureColumnsAnndataLoader, ObsEmbeddingAnndataLoader, ObsSpotsAnndataLoader, ObsPointsAnndataLoader, ObsLocationsAnndataLoader, ObsSegmentationsAnndataLoader, ObsSetsAnndataLoader, ObsLabelsAnndataLoader, FeatureLabelsAnndataLoader, SampleEdgesAnndataLoader, 
 // MuData
 MuDataSource, 
+// Legacy
+ZarrDataSource, MatrixZarrAsObsFeatureMatrixLoader, GenomicProfilesZarrLoader, } from '@vitessce/zarr';
+import { 
 // OME
 OmeZarrLoader, OmeZarrAsObsSegmentationsLoader, 
 // SpatialData
-SpatialDataTableSource, SpatialDataShapesSource, SpatialDataImageLoader, SpatialDataLabelsLoader, SpatialDataObsSpotsLoader, SpatialDataObsSetsLoader, 
-// Legacy
-ZarrDataSource, MatrixZarrAsObsFeatureMatrixLoader, GenomicProfilesZarrLoader, } from '@vitessce/zarr';
+SpatialDataTableSource, SpatialDataShapesSource, SpatialDataImageLoader, SpatialDataLabelsLoader, SpatialDataObsSpotsLoader, SpatialDataObsSetsLoader, } from '@vitessce/spatial-zarr';
 import { OmeTiffAsObsSegmentationsLoader, OmeTiffLoader, OmeTiffSource, } from '@vitessce/ome-tiff';
 import { GlbSource, GlbLoader, } from '@vitessce/glb';
 // Joint file types
-import { BiomarkerSelectSubscriber, autocompleteFeature, transformFeature, } from '@vitessce/biomarker-select';
+import { BiomarkerSelectSubscriber, autocompleteFeature, transformFeature, getAlternativeTerms, getTermMapping, } from '@vitessce/biomarker-select';
 import { expandAnndataZarr, expandSpatialdataZarr, } from './joint-file-types.js';
 import { expandAnndataCellSetsZarr, expandAnndataCellsZarr, expandAnndataExpressionMatrixZarr, expandCellSetsJson, expandCellsJson, expandClustersJson, expandExpressionMatrixZarr, expandGenesJson, expandMoleculesJson, expandRasterJson, expandRasterOmeZarr, } from './joint-file-types-legacy.js';
 // Biomarker select UI and default async functions.
@@ -82,6 +84,7 @@ export const baseViewTypes = [
     makeViewType(ViewType.GENOMIC_PROFILES, GenomicProfilesSubscriber),
     makeViewType(ViewType.DOT_PLOT, DotPlotSubscriber),
     makeViewType(ViewType.BIOMARKER_SELECT, BiomarkerSelectSubscriber),
+    makeViewType(ViewType.LINK_CONTROLLER, LinkControllerSubscriber),
 ];
 export const baseFileTypes = [
     // All CSV file types
@@ -298,4 +301,6 @@ export const baseCoordinationTypes = [
 export const baseAsyncFunctions = [
     new PluginAsyncFunction(AsyncFunctionType.AUTOCOMPLETE_FEATURE, autocompleteFeature),
     new PluginAsyncFunction(AsyncFunctionType.TRANSFORM_FEATURE, transformFeature),
+    new PluginAsyncFunction(AsyncFunctionType.GET_ALTERNATIVE_TERMS, getAlternativeTerms),
+    new PluginAsyncFunction(AsyncFunctionType.GET_TERM_MAPPING, getTermMapping),
 ];

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/all",
-  "version": "3.5.2",
+  "version": "3.5.3",
   "author": "HIDIVE Lab at HMS",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -18,30 +18,33 @@
   "dependencies": {
     "@material-ui/core": "~4.12.3",
     "zod": "^3.21.4",
-    "@vitessce/constants-internal": "3.5.2",
-    "@vitessce/csv": "3.5.2",
-    "@vitessce/description": "3.5.2",
-    "@vitessce/feature-list": "3.5.2",
-    "@vitessce/genomic-profiles": "3.5.2",
-    "@vitessce/heatmap": "3.5.2",
-    "@vitessce/glb": "3.5.2",
-    "@vitessce/json": "3.5.2",
-    "@vitessce/layer-controller": "3.5.2",
-    "@vitessce/layer-controller-beta": "3.5.2",
-    "@vitessce/obs-sets-manager": "3.5.2",
-    "@vitessce/ome-tiff": "3.5.2",
-    "@vitessce/plugins": "3.5.2",
-    "@vitessce/scatterplot-embedding": "3.5.2",
-    "@vitessce/scatterplot-gating": "3.5.2",
-    "@vitessce/schemas": "3.5.2",
-    "@vitessce/spatial": "3.5.2",
-    "@vitessce/spatial-beta": "3.5.2",
-    "@vitessce/statistical-plots": "3.5.2",
-    "@vitessce/status": "3.5.2",
-    "@vitessce/vit-s": "3.5.2",
-    "@vitessce/zarr": "3.5.2",
-    "@vitessce/spatial-three": "3.5.2",
-    "@vitessce/biomarker-select": "3.5.2"
+    "@vitessce/constants-internal": "3.5.3",
+    "@vitessce/abstract": "3.5.3",
+    "@vitessce/csv": "3.5.3",
+    "@vitessce/description": "3.5.3",
+    "@vitessce/feature-list": "3.5.3",
+    "@vitessce/genomic-profiles": "3.5.3",
+    "@vitessce/heatmap": "3.5.3",
+    "@vitessce/glb": "3.5.3",
+    "@vitessce/json": "3.5.3",
+    "@vitessce/layer-controller": "3.5.3",
+    "@vitessce/layer-controller-beta": "3.5.3",
+    "@vitessce/link-controller": "3.5.3",
+    "@vitessce/obs-sets-manager": "3.5.3",
+    "@vitessce/ome-tiff": "3.5.3",
+    "@vitessce/plugins": "3.5.3",
+    "@vitessce/scatterplot-embedding": "3.5.3",
+    "@vitessce/scatterplot-gating": "3.5.3",
+    "@vitessce/schemas": "3.5.3",
+    "@vitessce/spatial": "3.5.3",
+    "@vitessce/spatial-beta": "3.5.3",
+    "@vitessce/statistical-plots": "3.5.3",
+    "@vitessce/status": "3.5.3",
+    "@vitessce/vit-s": "3.5.3",
+    "@vitessce/zarr": "3.5.3",
+    "@vitessce/spatial-zarr": "3.5.3",
+    "@vitessce/spatial-three": "3.5.3",
+    "@vitessce/biomarker-select": "3.5.3"
   },
   "devDependencies": {
     "@types/react": "^18.0.28",

package/src/base-plugins.ts

@@ -79,6 +79,7 @@ import { HeatmapSubscriber } from '@vitessce/heatmap';
 import { FeatureListSubscriber } from '@vitessce/feature-list';
 import { LayerControllerSubscriber } from '@vitessce/layer-controller';
 import { LayerControllerBetaSubscriber } from '@vitessce/layer-controller-beta';
+import { LinkControllerSubscriber } from '@vitessce/link-controller';
 import { StatusSubscriber } from '@vitessce/status';
 import { HiGlassSubscriber, GenomicProfilesSubscriber } from '@vitessce/genomic-profiles';
 import {
@@ -137,6 +138,13 @@ import {
   SampleEdgesAnndataLoader,
   // MuData
   MuDataSource,
+  // Legacy
+  ZarrDataSource,
+  MatrixZarrAsObsFeatureMatrixLoader,
+  GenomicProfilesZarrLoader,
+} from '@vitessce/zarr';
+
+import {
   // OME
   OmeZarrLoader,
   OmeZarrAsObsSegmentationsLoader,
@@ -147,11 +155,8 @@ import {
   SpatialDataLabelsLoader,
   SpatialDataObsSpotsLoader,
   SpatialDataObsSetsLoader,
-  // Legacy
-  ZarrDataSource,
-  MatrixZarrAsObsFeatureMatrixLoader,
-  GenomicProfilesZarrLoader,
-} from '@vitessce/zarr';
+} from '@vitessce/spatial-zarr';
+
 import {
   OmeTiffAsObsSegmentationsLoader,
   OmeTiffLoader,
@@ -167,6 +172,8 @@ import {
   BiomarkerSelectSubscriber,
   autocompleteFeature,
   transformFeature,
+  getAlternativeTerms,
+  getTermMapping,
 } from '@vitessce/biomarker-select';
 import {
   expandAnndataZarr,
@@ -230,6 +237,7 @@ export const baseViewTypes = [
   makeViewType(ViewType.GENOMIC_PROFILES, GenomicProfilesSubscriber),
   makeViewType(ViewType.DOT_PLOT, DotPlotSubscriber),
   makeViewType(ViewType.BIOMARKER_SELECT, BiomarkerSelectSubscriber),
+  makeViewType(ViewType.LINK_CONTROLLER, LinkControllerSubscriber),
 ];
 
 export const baseFileTypes = [
@@ -531,4 +539,6 @@ export const baseCoordinationTypes = [
 export const baseAsyncFunctions = [
   new PluginAsyncFunction(AsyncFunctionType.AUTOCOMPLETE_FEATURE, autocompleteFeature),
   new PluginAsyncFunction(AsyncFunctionType.TRANSFORM_FEATURE, transformFeature),
+  new PluginAsyncFunction(AsyncFunctionType.GET_ALTERNATIVE_TERMS, getAlternativeTerms),
+  new PluginAsyncFunction(AsyncFunctionType.GET_TERM_MAPPING, getTermMapping),
 ];