@vitessce/all 3.4.6 → 3.4.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/{deflate-e7981781.js → deflate-d380a1ac.js} +1 -1
- package/dist/{hglib-bba39ae0.js → hglib-fb36286c.js} +1 -1
- package/dist/{index-83f9cce3.js → index-18dbb697.js} +9753 -10093
- package/dist/{index-f116eaf5.js → index-bef5d3c7.js} +4162 -4162
- package/dist/index.js +3 -2
- package/dist/{jpeg-f66aaefd.js → jpeg-1e46c7a6.js} +1 -1
- package/dist/{lerc-741970d7.js → lerc-7335edde.js} +1 -1
- package/dist/{lzw-a04e4522.js → lzw-24106b2f.js} +1 -1
- package/dist/{packbits-b5b8f747.js → packbits-acb5020d.js} +1 -1
- package/dist/{raw-15b0c869.js → raw-a6eed765.js} +1 -1
- package/dist/{troika-three-text.esm-8933bcf9.js → troika-three-text.esm-57f1beb5.js} +1 -1
- package/dist/{webimage-c497d392.js → webimage-f766c600.js} +1 -1
- package/dist-tsc/Vitessce.d.ts.map +1 -1
- package/dist-tsc/Vitessce.js +3 -2
- package/dist-tsc/base-plugins.d.ts +36 -23
- package/dist-tsc/base-plugins.d.ts.map +1 -1
- package/dist-tsc/base-plugins.js +16 -3
- package/dist-tsc/index.d.ts +1 -1
- package/dist-tsc/index.d.ts.map +1 -1
- package/dist-tsc/index.js +1 -1
- package/dist-tsc/joint-file-types-legacy.d.ts +7 -7
- package/dist-tsc/joint-file-types-legacy.d.ts.map +1 -1
- package/dist-tsc/joint-file-types.d.ts +3 -3
- package/dist-tsc/joint-file-types.d.ts.map +1 -1
- package/dist-tsc/joint-file-types.js +11 -0
- package/package.json +24 -24
- package/src/Vitessce.tsx +3 -0
- package/src/base-plugins.ts +24 -2
- package/src/index.ts +1 -0
- package/src/joint-file-types.ts +11 -0
package/src/base-plugins.ts
CHANGED
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@@ -82,6 +82,7 @@ import {
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CellSetExpressionPlotSubscriber,
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CellSetSizesPlotSubscriber,
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ExpressionHistogramSubscriber,
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85
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+
DotPlotSubscriber,
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FeatureBarPlotSubscriber,
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} from '@vitessce/statistical-plots';
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@@ -212,6 +213,7 @@ export const baseViewTypes = [
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makeViewType(ViewType.FEATURE_BAR_PLOT, FeatureBarPlotSubscriber),
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makeViewType('higlass', HiGlassSubscriber),
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makeViewType(ViewType.GENOMIC_PROFILES, GenomicProfilesSubscriber),
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+
makeViewType(ViewType.DOT_PLOT, DotPlotSubscriber),
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];
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export const baseFileTypes = [
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@@ -414,6 +416,11 @@ export const baseCoordinationTypes = [
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1,
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z.number(),
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),
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+
new PluginCoordinationType(
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CoordinationType.FEATURE_VALUE_POSITIVITY_THRESHOLD,
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0,
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z.number(),
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),
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new PluginCoordinationType(
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CoordinationType.TOOLTIPS_VISIBLE,
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true,
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@@ -484,6 +491,21 @@ export const baseCoordinationTypes = [
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new PluginCoordinationType(CoordinationType.SPATIAL_CHANNEL_LABELS_VISIBLE, true, z.boolean()),
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new PluginCoordinationType(CoordinationType.SPATIAL_CHANNEL_LABELS_ORIENTATION, 'vertical', z.enum(['vertical', 'horizontal'])),
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new PluginCoordinationType(CoordinationType.SPATIAL_CHANNEL_LABEL_SIZE, 14, z.number()),
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-
new PluginCoordinationType(CoordinationType.SAMPLE_TYPE,
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-
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new PluginCoordinationType(CoordinationType.SAMPLE_TYPE, 'sample', z.string().nullable()),
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// TODO: remove one array level and use multi-coordination for sampleSetSelection?
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new PluginCoordinationType(CoordinationType.SAMPLE_SET_SELECTION, null, z.array(z.array(z.string())).nullable()),
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new PluginCoordinationType(
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CoordinationType.SAMPLE_SET_COLOR,
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null,
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z.array(z.object({
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path: obsSetPath,
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color: rgbArray,
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})).nullable(),
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),
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new PluginCoordinationType(CoordinationType.EMBEDDING_POINTS_VISIBLE, true, z.boolean()),
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new PluginCoordinationType(CoordinationType.EMBEDDING_CONTOURS_VISIBLE, false, z.boolean()),
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new PluginCoordinationType(CoordinationType.EMBEDDING_CONTOURS_FILLED, true, z.boolean()),
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new PluginCoordinationType(CoordinationType.EMBEDDING_CONTOUR_PERCENTILES, null, z.array(z.number()).nullable()),
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new PluginCoordinationType(CoordinationType.CONTOUR_COLOR_ENCODING, 'cellSetSelection', z.enum(['cellSetSelection', 'sampleSetSelection', 'contourColor'])),
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new PluginCoordinationType(CoordinationType.CONTOUR_COLOR, null, rgbArray.nullable()),
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];
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package/src/index.ts
CHANGED
package/src/joint-file-types.ts
CHANGED
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@@ -192,6 +192,17 @@ export function expandAnndataZarr(fileDef: z.infer<typeof latestFileDefSchema>)
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},
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}]
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) : []),
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+
// sampleEdges
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...(options.sampleEdges ? [{
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...baseFileDef,
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fileType: getFileType(FileType.SAMPLE_EDGES_ANNDATA_ZARR),
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options: options.sampleEdges,
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coordinationValues: {
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...extraCoordinationValues,
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obsType: baseFileDef.coordinationValues.obsType,
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sampleType: fileDef.coordinationValues?.sampleType || 'sample',
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},
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}] : []),
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];
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}
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