@vitessce/all 3.4.5 → 3.4.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/{deflate-37e298ad.js → deflate-d380a1ac.js} +1 -1
- package/dist/{hglib-382a2a9f.js → hglib-fb36286c.js} +1 -1
- package/dist/{index-a0d21216.js → index-18dbb697.js} +9753 -10093
- package/dist/{index-27ea6e6d.js → index-bef5d3c7.js} +4163 -4163
- package/dist/index.js +3 -2
- package/dist/{jpeg-7e0742ed.js → jpeg-1e46c7a6.js} +1 -1
- package/dist/{lerc-e9376ce5.js → lerc-7335edde.js} +1 -1
- package/dist/{lzw-5d92c02a.js → lzw-24106b2f.js} +1 -1
- package/dist/{packbits-6b74bad0.js → packbits-acb5020d.js} +1 -1
- package/dist/{raw-eead4407.js → raw-a6eed765.js} +1 -1
- package/dist/{troika-three-text.esm-f1101f37.js → troika-three-text.esm-57f1beb5.js} +1 -1
- package/dist/{webimage-9e2a568a.js → webimage-f766c600.js} +1 -1
- package/dist-tsc/Vitessce.d.ts.map +1 -1
- package/dist-tsc/Vitessce.js +3 -2
- package/dist-tsc/base-plugins.d.ts +36 -23
- package/dist-tsc/base-plugins.d.ts.map +1 -1
- package/dist-tsc/base-plugins.js +16 -3
- package/dist-tsc/index.d.ts +1 -1
- package/dist-tsc/index.d.ts.map +1 -1
- package/dist-tsc/index.js +1 -1
- package/dist-tsc/joint-file-types-legacy.d.ts +7 -7
- package/dist-tsc/joint-file-types-legacy.d.ts.map +1 -1
- package/dist-tsc/joint-file-types.d.ts +3 -3
- package/dist-tsc/joint-file-types.d.ts.map +1 -1
- package/dist-tsc/joint-file-types.js +11 -0
- package/package.json +24 -24
- package/src/Vitessce.tsx +3 -0
- package/src/base-plugins.ts +24 -2
- package/src/index.ts +1 -0
- package/src/joint-file-types.ts +11 -0
package/dist/index.js
CHANGED
@@ -1,13 +1,14 @@
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import { b3, b1, b4, b2, b0,
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import { b5, b3, b1, b4, b2, b0, b6 } from "./index-18dbb697.js";
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import { useCoordination } from "@vitessce/vit-s";
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import "react";
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import "react-dom";
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export {
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b5 as PluginAsyncFunction,
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b3 as PluginCoordinationType,
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b1 as PluginFileType,
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b4 as PluginJointFileType,
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b2 as PluginViewType,
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b0 as Vitessce,
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useCoordination,
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b6 as z
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};
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@@ -1,5 +1,5 @@
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import { i as inflate_1 } from "./pako.esm-68f84e2a.js";
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import { g as getDefaultExportFromCjs, aP as BaseDecoder, aQ as LercParameters, aR as LercAddCompression } from "./index-
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import { g as getDefaultExportFromCjs, aP as BaseDecoder, aQ as LercParameters, aR as LercAddCompression } from "./index-18dbb697.js";
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import "react";
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import "@vitessce/vit-s";
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import "react-dom";
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@@ -1,4 +1,4 @@
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import {
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import { aB as UniformsUtils, aW as MeshDepthMaterial, aX as RGBADepthPacking, aY as MeshDistanceMaterial, aZ as ShaderChunk, T as Texture, Z as LinearFilter, aw as InstancedBufferGeometry, au as Sphere, at as Box3, aH as BackSide, a4 as DoubleSide, a_ as InstancedBufferAttribute, V as Vector2, aD as Vector4, h as Color, aJ as Matrix3, a7 as Mesh, ao as FrontSide, a$ as PlaneGeometry, f as BufferGeometry, ax as Float32BufferAttribute, y as MeshBasicMaterial, k as Matrix4, b as Vector3 } from "./index-18dbb697.js";
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import "react";
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import "@vitessce/vit-s";
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import "react-dom";
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@@ -1 +1 @@
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{"version":3,"file":"Vitessce.d.ts","sourceRoot":"","sources":["../src/Vitessce.tsx"],"names":[],"mappings":"AAgBA,wBAAgB,QAAQ,CAAC,KAAK,EAAE,GAAG,
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{"version":3,"file":"Vitessce.d.ts","sourceRoot":"","sources":["../src/Vitessce.tsx"],"names":[],"mappings":"AAgBA,wBAAgB,QAAQ,CAAC,KAAK,EAAE,GAAG,8CAiElC"}
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package/dist-tsc/Vitessce.js
CHANGED
@@ -5,7 +5,7 @@ import { VitS, logConfig, } from '@vitessce/vit-s';
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import { upgradeAndParse, } from '@vitessce/schemas';
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import { baseViewTypes, baseFileTypes, baseJointFileTypes, baseCoordinationTypes, } from './base-plugins.js';
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export function Vitessce(props) {
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const { config, onConfigUpgrade, pluginViewTypes: pluginViewTypesProp, pluginFileTypes: pluginFileTypesProp, pluginCoordinationTypes: pluginCoordinationTypesProp, pluginJointFileTypes: pluginJointFileTypesProp, } = props;
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const { config, onConfigUpgrade, pluginViewTypes: pluginViewTypesProp, pluginFileTypes: pluginFileTypesProp, pluginCoordinationTypes: pluginCoordinationTypesProp, pluginJointFileTypes: pluginJointFileTypesProp, pluginAsyncFunctions, } = props;
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// If config.uid exists, then use it for hook dependencies to detect changes
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// (controlled component case). If not, then use the config object itself
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// and assume the un-controlled component case.
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@@ -41,5 +41,6 @@ export function Vitessce(props) {
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const mergedPluginCoordinationTypes = useMemo(() => ([
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...baseCoordinationTypes, ...(pluginCoordinationTypesProp || []),
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]), [pluginCoordinationTypesProp]);
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// TODO: merge with a set of "base" async functions
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return (_jsx(VitS, { ...props, config: configOrWarning, viewTypes: mergedPluginViewTypes, fileTypes: mergedPluginFileTypes, jointFileTypes: mergedPluginJointFileTypes, coordinationTypes: mergedPluginCoordinationTypes, asyncFunctions: pluginAsyncFunctions, warning: (success ? null : configOrWarning) }));
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}
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@@ -121,6 +121,13 @@ export declare const baseJointFileTypes: (PluginJointFileType<z.ZodObject<{
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embeddingType: string;
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dims?: number[] | undefined;
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}>, "many">]>>;
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sampleEdges: z.ZodOptional<z.ZodObject<{
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path: z.ZodString;
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}, "strip", z.ZodTypeAny, {
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path: string;
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}, {
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path: string;
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}>>;
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}, "strip", z.ZodTypeAny, {
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obsLabels?: {
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path: string;
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@@ -167,6 +174,9 @@ export declare const baseJointFileTypes: (PluginJointFileType<z.ZodObject<{
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embeddingType: string;
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dims?: number[] | undefined;
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}[] | undefined;
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sampleEdges?: {
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path: string;
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} | undefined;
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}, {
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obsLabels?: {
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path: string;
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embeddingType: string;
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dims?: number[] | undefined;
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}[] | undefined;
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sampleEdges?: {
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path: string;
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} | undefined;
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}>> | PluginJointFileType<z.ZodObject<{
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image: z.ZodOptional<z.ZodObject<{
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coordinateTransformations: z.ZodOptional<z.ZodArray<z.ZodUnion<[z.ZodObject<{
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name: string;
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color?: number[] | undefined;
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} & {
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children: (
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children: Array<({
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name: string;
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color?: number[] | undefined;
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} & any) | {
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set: [string, number | null][];
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name: string;
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color?: number[] | undefined;
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}
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}>;
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}, z.ZodTypeDef, {
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name: string;
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color?: number[] | undefined;
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} & {
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children: (
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children: Array<({
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name: string;
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color?: number[] | undefined;
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} & any) | {
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set: [string, number | null][];
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name: string;
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color?: number[] | undefined;
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}
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}>;
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}>, "many">;
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}, "strip", z.ZodTypeAny, {
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version: "0.1.3";
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name: string;
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color?: number[] | undefined;
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} & {
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children: (
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children: Array<({
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name: string;
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color?: number[] | undefined;
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} & any) | {
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set: [string, number | null][];
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}
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}>;
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})[];
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}, {
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version: "0.1.3";
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} & {
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children: (
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children: Array<({
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}
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}>;
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}>, z.ZodObject<{
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}>;
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}>;
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}>]>, {
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}>>> | PluginCoordinationType<z.ZodNullable<z.ZodUnion<[z.ZodNumber, z.ZodString]>>> | PluginCoordinationType<z.ZodNullable<z.ZodArray<z.ZodNumber, "many">>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["BlackIsZero", "RGB"]>>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["2D", "3D"]>>> | PluginCoordinationType<z.ZodEnum<["maximumIntensityProjection", "additive"]>> | PluginCoordinationType<z.ZodEnum<["vertical", "horizontal"]>>)[];
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}>>> | PluginCoordinationType<z.ZodNullable<z.ZodUnion<[z.ZodNumber, z.ZodString]>>> | PluginCoordinationType<z.ZodNullable<z.ZodArray<z.ZodNumber, "many">>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["BlackIsZero", "RGB"]>>> | PluginCoordinationType<z.ZodNullable<z.ZodEnum<["2D", "3D"]>>> | PluginCoordinationType<z.ZodEnum<["maximumIntensityProjection", "additive"]>> | PluginCoordinationType<z.ZodEnum<["vertical", "horizontal"]>> | PluginCoordinationType<z.ZodEnum<["cellSetSelection", "sampleSetSelection", "contourColor"]>>)[];
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//# sourceMappingURL=base-plugins.d.ts.map
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{"version":3,"file":"base-plugins.d.ts","sourceRoot":"","sources":["../src/base-plugins.ts"],"names":[],"mappings":"AAUA,OAAO,EACL,cAAc,EACd,mBAAmB,EACnB,cAAc,EACd,sBAAsB,EACvB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,KAAK,EACV,UAAU,EACV,UAAU,EACX,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACL,CAAC,EA4CF,MAAM,mBAAmB,CAAC;
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|
+
{"version":3,"file":"base-plugins.d.ts","sourceRoot":"","sources":["../src/base-plugins.ts"],"names":[],"mappings":"AAUA,OAAO,EACL,cAAc,EACd,mBAAmB,EACnB,cAAc,EACd,sBAAsB,EACvB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,KAAK,EACV,UAAU,EACV,UAAU,EACX,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EACL,CAAC,EA4CF,MAAM,mBAAmB,CAAC;AAoI3B,eAAO,MAAM,aAAa,kBAmBzB,CAAC;AAEF,eAAO,MAAM,aAAa,wDAqEzB,CAAC;AAEF,eAAO,MAAM,kBAAkB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;yBAuDH,CAAC;gCAAsD,CAAC;;;yBAChB,CAAC;gCACxC,CAAC;;;;;;;;;iBAIF,CAAC;;;;iBAC0C,CAAC;;;;;;;YAGxD,CAAC;;;YAEZ,CAAC;;;;;;;YAUe,CAAC;;;YAGf,CAAC;;;;;;;YAIuC,CAAC;;;YACb,CAAC;;;;;;;;;;;;;;YASF,CAAC;;;YAIxB,CAAC;;;;;;;;YASa,CAAC;;;;YAGG,CAAC;;;;;;;;;;;;;;;;;;;;;;;;yBAe1B,CAAH;gCAAsD,CAAC;;;;;iBASpC,CAAC;;;;YAKP,CAAC;;;;YAGM,CAAC;;;;YAIf,CAAC;;;;;;;YAON,CAAD;;;;YAIK,CAAC;;;;;;;;;;;;;;;;;;;;yBAMqE,CAAC;gCAC9C,CAAC;;;;;iBAEjB,CAAC;;;;YACK,CAAC;;;;YACI,CAAC;;;;YACE,CAAC;;;;;;;YACkE,CAAC;;;;YACV,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;iCAWI,CAAC;;;;;;;;;;;iCAGb,CAAA;;;;;;;;;;;;;;;;;;;;;;;;yBAMD,CAAC;gCAC1D,CAAC;cAAoC,CAAC;;;yBACV,CAAC;gCACnC,CAAC;cAAoC,CAAC;;;;;;;iBAEkC,CAAC;;;iBACrB,CAAC;;;;;;;;;;;;qBAKmB,CAAC;;;;qBAEnE,CAAC;;;;;;qBAEoC,CAAC;;cAAiD,CAAC;iBAE1G,CAAA;;;;;qBAO0B,CAAC;;cAAiD,CAAC;iBACrD,CAAC;;;;;iCACiC,CAAC;;;;;;;;;;;;;;;yBAGR,CAAC;gCAEtC,CAAC;cAAoC,CAAC;;;;iBAAiG,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;iCAAmH,CAAC;;;;;;;;;;;;;;;yBAAwW,CAAC;gCAAsD,CAAC;cAAoC,CAAC;;;;iBAAiG,CAAC;;;;;;qBAAoM,CAAC;;cAAiD,CAAC;iBAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;sBAlbtyC,CAAC;;;;;qBAKpE,CAAC;qBACc,CAAC;;;;;;;;;qBAaxB,CAAA;6BAEK,CAAC;;sBAEE,CAAC;;;;;qBAUiB,CAAC;qBACM,CAAC;;;;;;;;;qBAQpC,CAAC;6BAGK,CAAC;;;;;;;;;;;;;kBAwBF,CAAC;mBAEW,CAAC;gBAEhB,CAAC;gBAEI,CAAC;uBAEN,CAAA;iBACsB,CAAC;oBAItB,CAAC;oBAGH,CAAC;qBAEa,CAAC;;kBAGb,CAAC;mBACY,CAAC;gBAEZ,CAAC;gBAEH,CAAC;uBACuB,CAAC;iBAEV,CAAC;oBAED,CAAC;oBAInB,CAFA;qBAC0C,CAAC;;;;;;gBAEsC,CAAC;sBAG5E,CAAC;;;;;qBAC2B,CAAA;qBAA4C,CAAC;;;;;;;;;qBAGqD,CAAC;6BAChI,CAAC;;mBACF,CAAC;kBACW,CAAC;mBAAyC,CAAC;gBAClD,CAAC;gBAAsC,CAAC;uBAA6C,CAAC;iBAI7F,CAAC;oBACW,CAAC;oBAA0C,CAAC;qBAClB,CAAC;;;;;;gBAEI,CAAC;sBACzB,CAAC;;;;;qBAGiC,CAAC;qBAClB,CAAC;;;;;;;;;qBAG6C,CAAC;6BAC1C,CAAC;;mBACJ,CAAC;kBAAsB,CAAC;mBACxC,CAAC;gBAClB,CAAC;gBACN,CAAD;uBAA6C,CAAC;iBAC/B,CAAC;oBAGhB,CAAC;oBACW,CAAC;qBACmB,CAAC;;;;;;;;;gBAEjB,CAAC;sBAA0B,CAAC;;;;;qBAErB,CAAC;qBAA4C,CAAC;;;;;;;;;qBAEO,CAAC;6BAC1E,CAAC;;mBAAgE,CAAC;kBAAuB,CAAA;mBACxF,CAAC;gBAAmD,CAAC;gBAAsC,CAAC;uBAE/F,CAAD;iBAAuC,CAAC;oBAA0C,CAAC;oBAClF,CAAF;qBAA2C,CAAC;;;;;;;;;;;gBAGW,CAAC;sBAA0B,CAAC;;;;;qBAC+C,CAAC;qBAC9F,CAAC;;;;;;;;;qBACuG,CAAC;6BACtG,CAAC;;mBAAgE,CAAC;kBAAsB,CAAC;mBACrG,CAAC;gBAAmD,CAAC;gBAAsC,CAAC;uBAA6C,CAAC;iBACrI,CAAC;oBAA0C,CAAC;oBAA0C,CAAC;qBAA2C,CAAC;;;;;;;;;;;;;;OAiEnK,CAAC;AAIF,eAAO,MAAM,qBAAqB;;;;;;;;aA/RhC,CAAD;cACa,CAAC;eAEF,CAAC;;;aAIV,CAAC;cACe,CAAC;eAEd,CAAC;;;;;;;;;;;;;;;;;;;aAmCc,CAAC;cACQ,CAAC;eACvB,CAAA;;;;;;;;;;;;;;;;;;;aASc,CAAC;cACf,CAAC;eAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;aAzDhD,CAAD;cACa,CAAC;eAEF,CAAC;;;aAIV,CAAC;cACe,CAAC;eAEd,CAAC;;;;;;;;;;;;;;;;;;;aAmCc,CAAC;cACQ,CAAC;eACvB,CAAA;;;;;;;;;;;;;;;;;;;aASc,CAAC;cACf,CAAC;eAAuC,CAAC;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;4hBA+ajD,CAAC"}
|
package/dist-tsc/base-plugins.js
CHANGED
@@ -14,7 +14,7 @@ import { LayerControllerSubscriber } from '@vitessce/layer-controller';
|
|
14
14
|
import { LayerControllerBetaSubscriber } from '@vitessce/layer-controller-beta';
|
15
15
|
import { StatusSubscriber } from '@vitessce/status';
|
16
16
|
import { HiGlassSubscriber, GenomicProfilesSubscriber } from '@vitessce/genomic-profiles';
|
17
|
-
import { CellSetExpressionPlotSubscriber, CellSetSizesPlotSubscriber, ExpressionHistogramSubscriber, FeatureBarPlotSubscriber, } from '@vitessce/statistical-plots';
|
17
|
+
import { CellSetExpressionPlotSubscriber, CellSetSizesPlotSubscriber, ExpressionHistogramSubscriber, DotPlotSubscriber, FeatureBarPlotSubscriber, } from '@vitessce/statistical-plots';
|
18
18
|
// Register file type plugins
|
19
19
|
import {
|
20
20
|
// CSV
|
@@ -73,6 +73,7 @@ export const baseViewTypes = [
|
|
73
73
|
makeViewType(ViewType.FEATURE_BAR_PLOT, FeatureBarPlotSubscriber),
|
74
74
|
makeViewType('higlass', HiGlassSubscriber),
|
75
75
|
makeViewType(ViewType.GENOMIC_PROFILES, GenomicProfilesSubscriber),
|
76
|
+
makeViewType(ViewType.DOT_PLOT, DotPlotSubscriber),
|
76
77
|
];
|
77
78
|
export const baseFileTypes = [
|
78
79
|
// All CSV file types
|
@@ -219,6 +220,7 @@ export const baseCoordinationTypes = [
|
|
219
220
|
new PluginCoordinationType(CoordinationType.FEATURE_SELECTION, null, z.array(z.string()).nullable()),
|
220
221
|
new PluginCoordinationType(CoordinationType.FEATURE_VALUE_TRANSFORM, null, z.enum(['log1p', 'arcsinh']).nullable()),
|
221
222
|
new PluginCoordinationType(CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT, 1, z.number()),
|
223
|
+
new PluginCoordinationType(CoordinationType.FEATURE_VALUE_POSITIVITY_THRESHOLD, 0, z.number()),
|
222
224
|
new PluginCoordinationType(CoordinationType.TOOLTIPS_VISIBLE, true, z.boolean()),
|
223
225
|
new PluginCoordinationType(CoordinationType.FEATURE_VALUE_COLORMAP, 'plasma', z.string().nullable()),
|
224
226
|
new PluginCoordinationType(CoordinationType.FEATURE_VALUE_COLORMAP_RANGE, [0.0, 1.0], z.array(z.number()).length(2)),
|
@@ -269,6 +271,17 @@ export const baseCoordinationTypes = [
|
|
269
271
|
new PluginCoordinationType(CoordinationType.SPATIAL_CHANNEL_LABELS_VISIBLE, true, z.boolean()),
|
270
272
|
new PluginCoordinationType(CoordinationType.SPATIAL_CHANNEL_LABELS_ORIENTATION, 'vertical', z.enum(['vertical', 'horizontal'])),
|
271
273
|
new PluginCoordinationType(CoordinationType.SPATIAL_CHANNEL_LABEL_SIZE, 14, z.number()),
|
272
|
-
new PluginCoordinationType(CoordinationType.SAMPLE_TYPE,
|
273
|
-
|
274
|
+
new PluginCoordinationType(CoordinationType.SAMPLE_TYPE, 'sample', z.string().nullable()),
|
275
|
+
// TODO: remove one array level and use multi-coordination for sampleSetSelection?
|
276
|
+
new PluginCoordinationType(CoordinationType.SAMPLE_SET_SELECTION, null, z.array(z.array(z.string())).nullable()),
|
277
|
+
new PluginCoordinationType(CoordinationType.SAMPLE_SET_COLOR, null, z.array(z.object({
|
278
|
+
path: obsSetPath,
|
279
|
+
color: rgbArray,
|
280
|
+
})).nullable()),
|
281
|
+
new PluginCoordinationType(CoordinationType.EMBEDDING_POINTS_VISIBLE, true, z.boolean()),
|
282
|
+
new PluginCoordinationType(CoordinationType.EMBEDDING_CONTOURS_VISIBLE, false, z.boolean()),
|
283
|
+
new PluginCoordinationType(CoordinationType.EMBEDDING_CONTOURS_FILLED, true, z.boolean()),
|
284
|
+
new PluginCoordinationType(CoordinationType.EMBEDDING_CONTOUR_PERCENTILES, null, z.array(z.number()).nullable()),
|
285
|
+
new PluginCoordinationType(CoordinationType.CONTOUR_COLOR_ENCODING, 'cellSetSelection', z.enum(['cellSetSelection', 'sampleSetSelection', 'contourColor'])),
|
286
|
+
new PluginCoordinationType(CoordinationType.CONTOUR_COLOR, null, rgbArray.nullable()),
|
274
287
|
];
|
package/dist-tsc/index.d.ts
CHANGED
@@ -1,5 +1,5 @@
|
|
1
1
|
export { Vitessce } from './Vitessce.js';
|
2
|
-
export { PluginFileType, PluginViewType, PluginCoordinationType, PluginJointFileType, } from '@vitessce/plugins';
|
2
|
+
export { PluginFileType, PluginViewType, PluginCoordinationType, PluginJointFileType, PluginAsyncFunction, } from '@vitessce/plugins';
|
3
3
|
export { z } from '@vitessce/schemas';
|
4
4
|
export { useCoordination } from '@vitessce/vit-s';
|
5
5
|
//# sourceMappingURL=index.d.ts.map
|
package/dist-tsc/index.d.ts.map
CHANGED
@@ -1 +1 @@
|
|
1
|
-
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AACzC,OAAO,EACL,cAAc,EACd,cAAc,EACd,sBAAsB,EACtB,mBAAmB,GACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,CAAC,EAAE,MAAM,mBAAmB,CAAC;AACtC,OAAO,EAAE,eAAe,EAAE,MAAM,iBAAiB,CAAC"}
|
1
|
+
{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,eAAe,CAAC;AACzC,OAAO,EACL,cAAc,EACd,cAAc,EACd,sBAAsB,EACtB,mBAAmB,EACnB,mBAAmB,GACpB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,CAAC,EAAE,MAAM,mBAAmB,CAAC;AACtC,OAAO,EAAE,eAAe,EAAE,MAAM,iBAAiB,CAAC"}
|
package/dist-tsc/index.js
CHANGED
@@ -1,4 +1,4 @@
|
|
1
1
|
export { Vitessce } from './Vitessce.js';
|
2
|
-
export { PluginFileType, PluginViewType, PluginCoordinationType, PluginJointFileType, } from '@vitessce/plugins';
|
2
|
+
export { PluginFileType, PluginViewType, PluginCoordinationType, PluginJointFileType, PluginAsyncFunction, } from '@vitessce/plugins';
|
3
3
|
export { z } from '@vitessce/schemas';
|
4
4
|
export { useCoordination } from '@vitessce/vit-s';
|
@@ -22,7 +22,7 @@ export declare function expandMoleculesJson(fileDef: legacyFileDefSchema): {
|
|
22
22
|
referrer?: string | undefined;
|
23
23
|
integrity?: string | undefined;
|
24
24
|
} | undefined;
|
25
|
-
type?: string
|
25
|
+
type?: string;
|
26
26
|
}[];
|
27
27
|
export declare function expandExpressionMatrixZarr(fileDef: legacyFileDefSchema): {
|
28
28
|
fileType: string;
|
@@ -45,7 +45,7 @@ export declare function expandExpressionMatrixZarr(fileDef: legacyFileDefSchema)
|
|
45
45
|
referrer?: string | undefined;
|
46
46
|
integrity?: string | undefined;
|
47
47
|
} | undefined;
|
48
|
-
type?: string
|
48
|
+
type?: string;
|
49
49
|
}[];
|
50
50
|
export declare function expandRasterJson(fileDef: legacyFileDefSchema): {
|
51
51
|
fileType: string;
|
@@ -64,7 +64,7 @@ export declare function expandRasterJson(fileDef: legacyFileDefSchema): {
|
|
64
64
|
integrity?: string | undefined;
|
65
65
|
} | undefined;
|
66
66
|
coordinationValues?: Record<string, string> | undefined;
|
67
|
-
type?: string
|
67
|
+
type?: string;
|
68
68
|
}[];
|
69
69
|
export declare function expandRasterOmeZarr(fileDef: legacyFileDefSchema): {
|
70
70
|
fileType: string;
|
@@ -83,7 +83,7 @@ export declare function expandRasterOmeZarr(fileDef: legacyFileDefSchema): {
|
|
83
83
|
integrity?: string | undefined;
|
84
84
|
} | undefined;
|
85
85
|
coordinationValues?: Record<string, string> | undefined;
|
86
|
-
type?: string
|
86
|
+
type?: string;
|
87
87
|
}[];
|
88
88
|
export declare function expandCellSetsJson(fileDef: legacyFileDefSchema): {
|
89
89
|
fileType: string;
|
@@ -104,7 +104,7 @@ export declare function expandCellSetsJson(fileDef: legacyFileDefSchema): {
|
|
104
104
|
referrer?: string | undefined;
|
105
105
|
integrity?: string | undefined;
|
106
106
|
} | undefined;
|
107
|
-
type?: string
|
107
|
+
type?: string;
|
108
108
|
}[];
|
109
109
|
export declare function expandCellsJson(fileDef: legacyFileDefSchema): any[];
|
110
110
|
export declare function expandClustersJson(fileDef: legacyFileDefSchema): {
|
@@ -128,7 +128,7 @@ export declare function expandClustersJson(fileDef: legacyFileDefSchema): {
|
|
128
128
|
referrer?: string | undefined;
|
129
129
|
integrity?: string | undefined;
|
130
130
|
} | undefined;
|
131
|
-
type?: string
|
131
|
+
type?: string;
|
132
132
|
}[];
|
133
133
|
export declare function expandGenesJson(fileDef: legacyFileDefSchema): {
|
134
134
|
fileType: string;
|
@@ -151,7 +151,7 @@ export declare function expandGenesJson(fileDef: legacyFileDefSchema): {
|
|
151
151
|
referrer?: string | undefined;
|
152
152
|
integrity?: string | undefined;
|
153
153
|
} | undefined;
|
154
|
-
type?: string
|
154
|
+
type?: string;
|
155
155
|
}[];
|
156
156
|
export declare function expandAnndataCellsZarr(fileDef: legacyFileDefSchema): any[];
|
157
157
|
export declare function expandAnndataCellSetsZarr(fileDef: legacyFileDefSchema): {
|
@@ -1 +1 @@
|
|
1
|
-
{"version":3,"file":"joint-file-types-legacy.d.ts","sourceRoot":"","sources":["../src/joint-file-types-legacy.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAC7B,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,mBAAmB,CAAC;AAG7D,KAAK,mBAAmB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,GAAG;IAC/D,IAAI,CAAC,EAAE,MAAM,CAAC;CACf,CAAC;AAEF,wBAAgB,mBAAmB,CAAC,OAAO,EAAE,mBAAmB
|
1
|
+
{"version":3,"file":"joint-file-types-legacy.d.ts","sourceRoot":"","sources":["../src/joint-file-types-legacy.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAC7B,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,mBAAmB,CAAC;AAG7D,KAAK,mBAAmB,GAAG,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,GAAG;IAC/D,IAAI,CAAC,EAAE,MAAM,CAAC;CACf,CAAC;AAEF,wBAAgB,mBAAmB,CAAC,OAAO,EAAE,mBAAmB;;;;;;;;;cAoRq23G,CAAC;eAAqC,CAAC;YAA+C,CAAC;YAAkC,CAAC;mBAAyC,CAAC;aAAmC,CAAC;gBAAsC,CAAC;gBAAsC,CAAC;iBAAuC,CAAC;;WAvR1t4G,MAAM;IAqBd;AAED,wBAAgB,0BAA0B,CAAC,OAAO,EAAE,mBAAmB;;;;;;;;;;;cAgQ813G,CAAC;eAAqC,CAAC;YAA+C,CAAC;YAAkC,CAAC;mBAAyC,CAAC;aAAmC,CAAC;gBAAsC,CAAC;gBAAsC,CAAC;iBAAuC,CAAC;;WAvR1t4G,MAAM;IAuCd;AAED,wBAAgB,gBAAgB,CAAC,OAAO,EAAE,mBAAmB;;;;;;cA8Ow23G,CAAC;eAAqC,CAAC;YAA+C,CAAC;YAAkC,CAAC;mBAAyC,CAAC;aAAmC,CAAC;gBAAsC,CAAC;gBAAsC,CAAC;iBAAuC,CAAC;;;WAvR1t4G,MAAM;IA0Dd;AAED,wBAAgB,mBAAmB,CAAC,OAAO,EAAE,mBAAmB;;;;;;cA2Nq23G,CAAC;eAAqC,CAAC;YAA+C,CAAC;YAAkC,CAAC;mBAAyC,CAAC;aAAmC,CAAC;gBAAsC,CAAC;gBAAsC,CAAC;iBAAuC,CAAC;;;WAvR1t4G,MAAM;IAqEd;AAED,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,mBAAmB;;;;;;;;;cAgNs23G,CAAC;eAAqC,CAAC;YAA+C,CAAC;YAAkC,CAAC;mBAAyC,CAAC;aAAmC,CAAC;gBAAsC,CAAC;gBAAsC,CAAC;iBAAuC,CAAC;;WAvR1t4G,MAAM;IAmFd;AAED,wBAAgB,eAAe,CAAC,OAAO,EAAE,mBAAmB,SA0C3D;AAED,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,mBAAmB;;;;;;;;;;;cAsJs23G,CAAC;eAAqC,CAAC;YAA+C,CAAC;YAAkC,CAAC;mBAAyC,CAAC;aAAmC,CAAC;gBAAsC,CAAC;gBAAsC,CAAC;iBAAuC,CAAC;;WAvR1t4G,MAAM;IAiJd;AAED,wBAAgB,eAAe,CAAC,OAAO,EAAE,mBAAmB;;;;;;;;;;;cAoIy23G,CAAC;eAAqC,CAAC;YAA+C,CAAC;YAAkC,CAAC;mBAAyC,CAAC;aAAmC,CAAC;gBAAsC,CAAC;gBAAsC,CAAC;iBAAuC,CAAC;;WAvR1t4G,MAAM;IAmKd;AAeD,wBAAgB,sBAAsB,CAAC,OAAO,EAAE,mBAAmB,SAkDlE;AAED,wBAAgB,yBAAyB,CAAC,OAAO,EAAE,mBAAmB;;;;;;;;;;;;;;;;;;IAiBrE;AAED,wBAAgB,iCAAiC,CAAC,OAAO,EAAE,mBAAmB;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;KA6B7E"}
|
@@ -9,7 +9,7 @@ export declare function expandSpatialdataZarr(fileDef: z.infer<typeof latestFile
|
|
9
9
|
featureType: string;
|
10
10
|
featureValueType: string;
|
11
11
|
};
|
12
|
-
url?: string
|
12
|
+
url?: string;
|
13
13
|
requestInit?: any;
|
14
14
|
} | {
|
15
15
|
fileType: string;
|
@@ -17,7 +17,7 @@ export declare function expandSpatialdataZarr(fileDef: z.infer<typeof latestFile
|
|
17
17
|
coordinationValues: {
|
18
18
|
obsType: string;
|
19
19
|
};
|
20
|
-
url?: string
|
20
|
+
url?: string;
|
21
21
|
requestInit?: any;
|
22
22
|
} | {
|
23
23
|
fileType: string;
|
@@ -25,7 +25,7 @@ export declare function expandSpatialdataZarr(fileDef: z.infer<typeof latestFile
|
|
25
25
|
coordinationValues: {
|
26
26
|
featureType: string;
|
27
27
|
};
|
28
|
-
url?: string
|
28
|
+
url?: string;
|
29
29
|
requestInit?: any;
|
30
30
|
})[];
|
31
31
|
//# sourceMappingURL=joint-file-types.d.ts.map
|
@@ -1 +1 @@
|
|
1
|
-
{"version":3,"file":"joint-file-types.d.ts","sourceRoot":"","sources":["../src/joint-file-types.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAC7B,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,mBAAmB,CAAC;AA0B7D,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,
|
1
|
+
{"version":3,"file":"joint-file-types.d.ts","sourceRoot":"","sources":["../src/joint-file-types.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,EAAE,CAAC,EAAE,MAAM,KAAK,CAAC;AAC7B,OAAO,KAAK,EAAE,mBAAmB,EAAE,MAAM,mBAAmB,CAAC;AA0B7D,wBAAgB,iBAAiB,CAAC,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC,SAmL7E;AAED,wBAAgB,qBAAqB,CAAC,OAAO,EAAE,CAAC,CAAC,KAAK,CAAC,OAAO,mBAAmB,CAAC;;;;;;;;UA3M1E,MAAM;kBACE,GAAG;;;;;;;UADX,MAAM;kBACE,GAAG;;;;;;;UADX,MAAM;kBACE,GAAG;KAsRlB"}
|
@@ -174,6 +174,17 @@ export function expandAnndataZarr(fileDef) {
|
|
174
174
|
featureLabelsType: baseFileDef.coordinationValues.featureLabelsType,
|
175
175
|
},
|
176
176
|
}]) : []),
|
177
|
+
// sampleEdges
|
178
|
+
...(options.sampleEdges ? [{
|
179
|
+
...baseFileDef,
|
180
|
+
fileType: getFileType(FileType.SAMPLE_EDGES_ANNDATA_ZARR),
|
181
|
+
options: options.sampleEdges,
|
182
|
+
coordinationValues: {
|
183
|
+
...extraCoordinationValues,
|
184
|
+
obsType: baseFileDef.coordinationValues.obsType,
|
185
|
+
sampleType: fileDef.coordinationValues?.sampleType || 'sample',
|
186
|
+
},
|
187
|
+
}] : []),
|
177
188
|
];
|
178
189
|
}
|
179
190
|
export function expandSpatialdataZarr(fileDef) {
|
package/package.json
CHANGED
@@ -1,6 +1,6 @@
|
|
1
1
|
{
|
2
2
|
"name": "@vitessce/all",
|
3
|
-
"version": "3.4.
|
3
|
+
"version": "3.4.7",
|
4
4
|
"author": "Gehlenborg Lab",
|
5
5
|
"homepage": "http://vitessce.io",
|
6
6
|
"repository": {
|
@@ -18,29 +18,29 @@
|
|
18
18
|
"dependencies": {
|
19
19
|
"@material-ui/core": "~4.12.3",
|
20
20
|
"zod": "^3.21.4",
|
21
|
-
"@vitessce/constants-internal": "3.4.
|
22
|
-
"@vitessce/csv": "3.4.
|
23
|
-
"@vitessce/description": "3.4.
|
24
|
-
"@vitessce/feature-list": "3.4.
|
25
|
-
"@vitessce/genomic-profiles": "3.4.
|
26
|
-
"@vitessce/heatmap": "3.4.
|
27
|
-
"@vitessce/glb": "3.4.
|
28
|
-
"@vitessce/json": "3.4.
|
29
|
-
"@vitessce/layer-controller
|
30
|
-
"@vitessce/layer-controller": "3.4.
|
31
|
-
"@vitessce/obs-sets-manager": "3.4.
|
32
|
-
"@vitessce/ome-tiff": "3.4.
|
33
|
-
"@vitessce/plugins": "3.4.
|
34
|
-
"@vitessce/scatterplot-embedding": "3.4.
|
35
|
-
"@vitessce/scatterplot-gating": "3.4.
|
36
|
-
"@vitessce/schemas": "3.4.
|
37
|
-
"@vitessce/spatial": "3.4.
|
38
|
-
"@vitessce/spatial-beta": "3.4.
|
39
|
-
"@vitessce/
|
40
|
-
"@vitessce/
|
41
|
-
"@vitessce/
|
42
|
-
"@vitessce/
|
43
|
-
"@vitessce/
|
21
|
+
"@vitessce/constants-internal": "3.4.7",
|
22
|
+
"@vitessce/csv": "3.4.7",
|
23
|
+
"@vitessce/description": "3.4.7",
|
24
|
+
"@vitessce/feature-list": "3.4.7",
|
25
|
+
"@vitessce/genomic-profiles": "3.4.7",
|
26
|
+
"@vitessce/heatmap": "3.4.7",
|
27
|
+
"@vitessce/glb": "3.4.7",
|
28
|
+
"@vitessce/json": "3.4.7",
|
29
|
+
"@vitessce/layer-controller": "3.4.7",
|
30
|
+
"@vitessce/layer-controller-beta": "3.4.7",
|
31
|
+
"@vitessce/obs-sets-manager": "3.4.7",
|
32
|
+
"@vitessce/ome-tiff": "3.4.7",
|
33
|
+
"@vitessce/plugins": "3.4.7",
|
34
|
+
"@vitessce/scatterplot-embedding": "3.4.7",
|
35
|
+
"@vitessce/scatterplot-gating": "3.4.7",
|
36
|
+
"@vitessce/schemas": "3.4.7",
|
37
|
+
"@vitessce/spatial": "3.4.7",
|
38
|
+
"@vitessce/spatial-beta": "3.4.7",
|
39
|
+
"@vitessce/statistical-plots": "3.4.7",
|
40
|
+
"@vitessce/status": "3.4.7",
|
41
|
+
"@vitessce/vit-s": "3.4.7",
|
42
|
+
"@vitessce/zarr": "3.4.7",
|
43
|
+
"@vitessce/spatial-three": "3.4.7"
|
44
44
|
},
|
45
45
|
"devDependencies": {
|
46
46
|
"@types/react": "^18.0.28",
|
package/src/Vitessce.tsx
CHANGED
@@ -22,6 +22,7 @@ export function Vitessce(props: any) {
|
|
22
22
|
pluginFileTypes: pluginFileTypesProp,
|
23
23
|
pluginCoordinationTypes: pluginCoordinationTypesProp,
|
24
24
|
pluginJointFileTypes: pluginJointFileTypesProp,
|
25
|
+
pluginAsyncFunctions,
|
25
26
|
} = props;
|
26
27
|
|
27
28
|
// If config.uid exists, then use it for hook dependencies to detect changes
|
@@ -64,6 +65,7 @@ export function Vitessce(props: any) {
|
|
64
65
|
...baseCoordinationTypes, ...(pluginCoordinationTypesProp || []),
|
65
66
|
]), [pluginCoordinationTypesProp]);
|
66
67
|
|
68
|
+
// TODO: merge with a set of "base" async functions
|
67
69
|
|
68
70
|
return (
|
69
71
|
<VitS
|
@@ -73,6 +75,7 @@ export function Vitessce(props: any) {
|
|
73
75
|
fileTypes={mergedPluginFileTypes}
|
74
76
|
jointFileTypes={mergedPluginJointFileTypes}
|
75
77
|
coordinationTypes={mergedPluginCoordinationTypes}
|
78
|
+
asyncFunctions={pluginAsyncFunctions}
|
76
79
|
warning={(success ? null : configOrWarning)}
|
77
80
|
/>
|
78
81
|
);
|