@vitessce/all 3.4.0 → 3.4.1

package/dist/{deflate-7bb8f143.js → deflate-483e0297.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-68f84e2a.js";
-import { aP as BaseDecoder } from "./index-140dc037.js";
+import { aP as BaseDecoder } from "./index-0c4fa5f5.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{hglib-17711da5.js → hglib-dfec9221.js}

@@ -1,6 +1,6 @@
 import React__default from "react";
 import ReactDOM__default from "react-dom";
-import { aS as commonjsGlobal, aT as objectAssign, g as getDefaultExportFromCjs, aU as earcut, aV as getAugmentedNamespace } from "./index-140dc037.js";
+import { aS as commonjsGlobal, aT as objectAssign, g as getDefaultExportFromCjs, aU as earcut, aV as getAugmentedNamespace } from "./index-0c4fa5f5.js";
 function _mergeNamespaces(n, m) {
   for (var i = 0; i < m.length; i++) {
     const e = m[i];

package/dist/{index-140dc037.js → index-0c4fa5f5.js}

@@ -156444,16 +156444,16 @@ async function getDecoder(fileDirectory) {
   const Decoder = await importFn();
   return new Decoder(fileDirectory);
 }
-addDecoder([void 0, 1], () => import("./raw-a53d8fa1.js").then((m2) => m2.default));
-addDecoder(5, () => import("./lzw-c1df9f89.js").then((m2) => m2.default));
+addDecoder([void 0, 1], () => import("./raw-a34a5093.js").then((m2) => m2.default));
+addDecoder(5, () => import("./lzw-9be7353a.js").then((m2) => m2.default));
 addDecoder(6, () => {
   throw new Error("old style JPEG compression is not supported.");
 });
-addDecoder(7, () => import("./jpeg-893c69ce.js").then((m2) => m2.default));
-addDecoder([8, 32946], () => import("./deflate-7bb8f143.js").then((m2) => m2.default));
-addDecoder(32773, () => import("./packbits-8783b2ea.js").then((m2) => m2.default));
-addDecoder(34887, () => import("./lerc-4e4e101a.js").then((m2) => m2.default));
-addDecoder(50001, () => import("./webimage-ec142aa2.js").then((m2) => m2.default));
+addDecoder(7, () => import("./jpeg-f5534146.js").then((m2) => m2.default));
+addDecoder([8, 32946], () => import("./deflate-483e0297.js").then((m2) => m2.default));
+addDecoder(32773, () => import("./packbits-6c1f233d.js").then((m2) => m2.default));
+addDecoder(34887, () => import("./lerc-c82d1d20.js").then((m2) => m2.default));
+addDecoder(50001, () => import("./webimage-305cb0b6.js").then((m2) => m2.default));
 function copyNewSize(array2, width2, height2, samplesPerPixel = 1) {
   return new (Object.getPrototypeOf(array2)).constructor(width2 * height2 * samplesPerPixel);
 }
@@ -199590,7 +199590,7 @@ class ErrorBoundary extends React__default.Component {
   }
 }
 const LazySpatialThree = React__default.lazy(async () => {
-  const { SpatialWrapper: SpatialWrapper2 } = await import("./index-023ed0ea.js");
+  const { SpatialWrapper: SpatialWrapper2 } = await import("./index-771532a3.js");
   return { default: SpatialWrapper2 };
 });
 const SpatialThreeAdapter = React__default.forwardRef((props, ref2) => jsxRuntimeExports.jsx("div", { ref: ref2, style: { width: "100%", height: "100%" }, children: jsxRuntimeExports.jsx(ErrorBoundary, { children: jsxRuntimeExports.jsx(Suspense, { fallback: jsxRuntimeExports.jsx("div", { children: "Loading..." }), children: jsxRuntimeExports.jsx(LazySpatialThree, { ...props }) }) }) }));
@@ -208647,7 +208647,7 @@ const HIGLASS_BUNDLE_VERSION = "1.11.13";
 const HIGLASS_CSS_URL = `https://unpkg.com/${HIGLASS_PKG_NAME}@${HIGLASS_BUNDLE_VERSION}/dist/hglib.css`;
 register({ dataFetcher: ZarrMultivecDataFetcher_default, config: ZarrMultivecDataFetcher_default.config }, { pluginType: "dataFetcher" });
 const LazyHiGlassComponent = React__default.lazy(async () => {
-  const { HiGlassComponent } = await import("./hglib-17711da5.js").then((n3) => n3.h);
+  const { HiGlassComponent } = await import("./hglib-dfec9221.js").then((n3) => n3.h);
   return { default: HiGlassComponent };
 });
 const HG_SIZE = 800;
@@ -266660,9 +266660,10 @@ function FeatureBarPlot(props) {
   const { yMin, yMax, yUnits, jitter: jitter2, colors: colors2, data: data2, theme, width: width2, height: height2, marginTop = 5, marginRight = 5, marginLeft = 80, marginBottom, obsType, cellHighlight, cellSetSelection, additionalCellSets, cellSetColor, featureType, featureValueType, featureName, onBarSelect, onBarHighlight } = props;
   const setsSave = useMemo(() => {
     const result = /* @__PURE__ */ new Map();
-    cellSetSelection.forEach((obsSetPath2) => {
+    cellSetSelection == null ? void 0 : cellSetSelection.forEach((obsSetPath2) => {
+      var _a3, _b2, _c2;
       const selectedElement = obsSetPath2[1];
-      additionalCellSets.tree[0].children.forEach((child) => {
+      (_c2 = (_b2 = (_a3 = additionalCellSets == null ? void 0 : additionalCellSets.tree) == null ? void 0 : _a3[0]) == null ? void 0 : _b2.children) == null ? void 0 : _c2.forEach((child) => {
         if (child.name === selectedElement) {
           child.set.forEach(([obsId]) => {
             const info2 = { name: "", id: "", color: [] };
@@ -266678,6 +266679,7 @@ function FeatureBarPlot(props) {
         }
       });
     });
+    return result;
   }, [cellSetSelection, additionalCellSets, cellSetColor]);
   const svgRef = useRef();
   const maxCharactersForLabel = useMemo(() => data2.reduce((acc, val) => {

package/dist/{index-023ed0ea.js → index-771532a3.js}

@@ -1,4 +1,4 @@
-import { g as getDefaultExportFromCjs, R as Raycaster, O as OrthographicCamera, P as PerspectiveCamera, S as Scene, a as PCFSoftShadowMap, N as NoToneMapping, A as ACESFilmicToneMapping, V as Vector2, b as Vector3, L as Layers, T as Texture, c as RGBAFormat, U as UnsignedByteType, W as WebGLRenderer, C as Camera, B as BasicShadowMap, d as PCFShadowMap, e as VSMShadowMap, f as BufferGeometry, M as Material, h as Color, i as Clock, _ as _extends, j as THREE, G as Group, k as Matrix4, l as TrianglesDrawMode, m as TriangleFanDrawMode, n as TriangleStripDrawMode, o as REVISION, p as Loader, q as LoaderUtils, F as FileLoader, r as SpotLight, s as PointLight, D as DirectionalLight, t as MeshBasicMaterial, u as MeshPhysicalMaterial, I as InstancedMesh, v as Object3D, w as TextureLoader, x as ImageBitmapLoader, y as BufferAttribute, z as InterleavedBuffer, E as LinearFilter, H as LinearMipmapLinearFilter, J as RepeatWrapping, K as PointsMaterial, Q as LineBasicMaterial, X as MeshStandardMaterial, Y as DoubleSide, Z as PropertyBinding, $ as SkinnedMesh, a0 as Mesh, a1 as LineSegments, a2 as Line$1, a3 as LineLoop, a4 as Points, a5 as MathUtils, a6 as Skeleton, a7 as InterpolateLinear, a8 as AnimationClip, a9 as Bone, aa as Quaternion, ab as NearestFilter, ac as NearestMipmapNearestFilter, ad as LinearMipmapNearestFilter, ae as NearestMipmapLinearFilter, af as ClampToEdgeWrapping, ag as MirroredRepeatWrapping, ah as InterpolateDiscrete, ai as FrontSide, aj as InterleavedBufferAttribute, ak as VectorKeyframeTrack, al as QuaternionKeyframeTrack, am as NumberKeyframeTrack, an as Box3, ao as Sphere, ap as Interpolant, aq as SphereGeometry, ar as Ray$1, as as Plane, at as EventDispatcher, au as MOUSE, av as TOUCH, aw as Spherical, ax as InstancedBufferGeometry, ay as Float32BufferAttribute, az as InstancedInterleavedBuffer, aA as WireframeGeometry, aB as ShaderMaterial, aC as UniformsUtils, aD as UniformsLib, aE as Vector4, aF as Line3, aG as Triangle, aH as BackSide, aI as jsxRuntimeExports, aJ as Matrix3, aK as CoordinationType, aL as Data3DTexture, aM as RedFormat, aN as FloatType, aO as getImageSize } from "./index-140dc037.js";
+import { g as getDefaultExportFromCjs, R as Raycaster, O as OrthographicCamera, P as PerspectiveCamera, S as Scene, a as PCFSoftShadowMap, N as NoToneMapping, A as ACESFilmicToneMapping, V as Vector2, b as Vector3, L as Layers, T as Texture, c as RGBAFormat, U as UnsignedByteType, W as WebGLRenderer, C as Camera, B as BasicShadowMap, d as PCFShadowMap, e as VSMShadowMap, f as BufferGeometry, M as Material, h as Color, i as Clock, _ as _extends, j as THREE, G as Group, k as Matrix4, l as TrianglesDrawMode, m as TriangleFanDrawMode, n as TriangleStripDrawMode, o as REVISION, p as Loader, q as LoaderUtils, F as FileLoader, r as SpotLight, s as PointLight, D as DirectionalLight, t as MeshBasicMaterial, u as MeshPhysicalMaterial, I as InstancedMesh, v as Object3D, w as TextureLoader, x as ImageBitmapLoader, y as BufferAttribute, z as InterleavedBuffer, E as LinearFilter, H as LinearMipmapLinearFilter, J as RepeatWrapping, K as PointsMaterial, Q as LineBasicMaterial, X as MeshStandardMaterial, Y as DoubleSide, Z as PropertyBinding, $ as SkinnedMesh, a0 as Mesh, a1 as LineSegments, a2 as Line$1, a3 as LineLoop, a4 as Points, a5 as MathUtils, a6 as Skeleton, a7 as InterpolateLinear, a8 as AnimationClip, a9 as Bone, aa as Quaternion, ab as NearestFilter, ac as NearestMipmapNearestFilter, ad as LinearMipmapNearestFilter, ae as NearestMipmapLinearFilter, af as ClampToEdgeWrapping, ag as MirroredRepeatWrapping, ah as InterpolateDiscrete, ai as FrontSide, aj as InterleavedBufferAttribute, ak as VectorKeyframeTrack, al as QuaternionKeyframeTrack, am as NumberKeyframeTrack, an as Box3, ao as Sphere, ap as Interpolant, aq as SphereGeometry, ar as Ray$1, as as Plane, at as EventDispatcher, au as MOUSE, av as TOUCH, aw as Spherical, ax as InstancedBufferGeometry, ay as Float32BufferAttribute, az as InstancedInterleavedBuffer, aA as WireframeGeometry, aB as ShaderMaterial, aC as UniformsUtils, aD as UniformsLib, aE as Vector4, aF as Line3, aG as Triangle, aH as BackSide, aI as jsxRuntimeExports, aJ as Matrix3, aK as CoordinationType, aL as Data3DTexture, aM as RedFormat, aN as FloatType, aO as getImageSize } from "./index-0c4fa5f5.js";
 import * as React from "react";
 import React__default, { useReducer, useRef, useDebugValue, useEffect, useLayoutEffect, useState, useMemo, forwardRef } from "react";
 import "@vitessce/vit-s";
@@ -23800,7 +23800,7 @@ const Text = /* @__PURE__ */ React.forwardRef(({
   const {
     Text: TextMeshImpl,
     preloadFont
-  } = suspend(async () => import("./troika-three-text.esm-85a44c26.js"), []);
+  } = suspend(async () => import("./troika-three-text.esm-0934bf13.js"), []);
   const invalidate2 = useThree(({
     invalidate: invalidate3
   }) => invalidate3);
@@ -27393,7 +27393,7 @@ function GeometryAndMesh(props) {
       }
     } else if (!isPresenting) {
       if (materialRef !== null) {
-        materialRef.current.material.uniforms.u_physical_Pixel.value = 2;
+        materialRef.current.material.uniforms.u_physical_Pixel.value = 2.5;
       }
     }
   }, [isPresenting]);

package/dist/index.js

@@ -1,4 +1,4 @@
-import { b3, b1, b4, b2, b0, b5 } from "./index-140dc037.js";
+import { b3, b1, b4, b2, b0, b5 } from "./index-0c4fa5f5.js";
 import { useCoordination } from "@vitessce/vit-s";
 import "react";
 import "react-dom";

package/dist/{jpeg-893c69ce.js → jpeg-f5534146.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-140dc037.js";
+import { aP as BaseDecoder } from "./index-0c4fa5f5.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{lerc-4e4e101a.js → lerc-c82d1d20.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-68f84e2a.js";
-import { g as getDefaultExportFromCjs, aP as BaseDecoder, aQ as LercParameters, aR as LercAddCompression } from "./index-140dc037.js";
+import { g as getDefaultExportFromCjs, aP as BaseDecoder, aQ as LercParameters, aR as LercAddCompression } from "./index-0c4fa5f5.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{lzw-c1df9f89.js → lzw-9be7353a.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-140dc037.js";
+import { aP as BaseDecoder } from "./index-0c4fa5f5.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{packbits-8783b2ea.js → packbits-6c1f233d.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-140dc037.js";
+import { aP as BaseDecoder } from "./index-0c4fa5f5.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{raw-a53d8fa1.js → raw-a34a5093.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-140dc037.js";
+import { aP as BaseDecoder } from "./index-0c4fa5f5.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{troika-three-text.esm-85a44c26.js → troika-three-text.esm-0934bf13.js}

@@ -1,4 +1,4 @@
-import { aC as UniformsUtils, aW as MeshDepthMaterial, aX as RGBADepthPacking, aY as MeshDistanceMaterial, aZ as ShaderChunk, T as Texture, E as LinearFilter, ax as InstancedBufferGeometry, ao as Sphere, an as Box3, aH as BackSide, Y as DoubleSide, a_ as InstancedBufferAttribute, V as Vector2, aE as Vector4, h as Color, aJ as Matrix3, a0 as Mesh, ai as FrontSide, a$ as PlaneGeometry, f as BufferGeometry, ay as Float32BufferAttribute, t as MeshBasicMaterial, k as Matrix4, b as Vector3 } from "./index-140dc037.js";
+import { aC as UniformsUtils, aW as MeshDepthMaterial, aX as RGBADepthPacking, aY as MeshDistanceMaterial, aZ as ShaderChunk, T as Texture, E as LinearFilter, ax as InstancedBufferGeometry, ao as Sphere, an as Box3, aH as BackSide, Y as DoubleSide, a_ as InstancedBufferAttribute, V as Vector2, aE as Vector4, h as Color, aJ as Matrix3, a0 as Mesh, ai as FrontSide, a$ as PlaneGeometry, f as BufferGeometry, ay as Float32BufferAttribute, t as MeshBasicMaterial, k as Matrix4, b as Vector3 } from "./index-0c4fa5f5.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{webimage-ec142aa2.js → webimage-305cb0b6.js}

@@ -1,4 +1,4 @@
-import { aP as BaseDecoder } from "./index-140dc037.js";
+import { aP as BaseDecoder } from "./index-0c4fa5f5.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/all",
-  "version": "3.4.0",
+  "version": "3.4.1",
   "author": "Gehlenborg Lab",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -18,29 +18,29 @@
   "dependencies": {
     "@material-ui/core": "~4.12.3",
     "zod": "^3.21.4",
-    "@vitessce/constants-internal": "3.4.0",
-    "@vitessce/csv": "3.4.0",
-    "@vitessce/feature-list": "3.4.0",
-    "@vitessce/glb": "3.4.0",
-    "@vitessce/description": "3.4.0",
-    "@vitessce/genomic-profiles": "3.4.0",
-    "@vitessce/heatmap": "3.4.0",
-    "@vitessce/json": "3.4.0",
-    "@vitessce/layer-controller": "3.4.0",
-    "@vitessce/layer-controller-beta": "3.4.0",
-    "@vitessce/obs-sets-manager": "3.4.0",
-    "@vitessce/ome-tiff": "3.4.0",
-    "@vitessce/plugins": "3.4.0",
-    "@vitessce/scatterplot-embedding": "3.4.0",
-    "@vitessce/schemas": "3.4.0",
-    "@vitessce/spatial": "3.4.0",
-    "@vitessce/scatterplot-gating": "3.4.0",
-    "@vitessce/spatial-beta": "3.4.0",
-    "@vitessce/statistical-plots": "3.4.0",
-    "@vitessce/status": "3.4.0",
-    "@vitessce/zarr": "3.4.0",
-    "@vitessce/spatial-three": "3.4.0",
-    "@vitessce/vit-s": "3.4.0"
+    "@vitessce/constants-internal": "3.4.1",
+    "@vitessce/description": "3.4.1",
+    "@vitessce/csv": "3.4.1",
+    "@vitessce/feature-list": "3.4.1",
+    "@vitessce/heatmap": "3.4.1",
+    "@vitessce/glb": "3.4.1",
+    "@vitessce/genomic-profiles": "3.4.1",
+    "@vitessce/json": "3.4.1",
+    "@vitessce/layer-controller": "3.4.1",
+    "@vitessce/layer-controller-beta": "3.4.1",
+    "@vitessce/obs-sets-manager": "3.4.1",
+    "@vitessce/ome-tiff": "3.4.1",
+    "@vitessce/plugins": "3.4.1",
+    "@vitessce/scatterplot-embedding": "3.4.1",
+    "@vitessce/scatterplot-gating": "3.4.1",
+    "@vitessce/schemas": "3.4.1",
+    "@vitessce/spatial": "3.4.1",
+    "@vitessce/spatial-beta": "3.4.1",
+    "@vitessce/statistical-plots": "3.4.1",
+    "@vitessce/status": "3.4.1",
+    "@vitessce/vit-s": "3.4.1",
+    "@vitessce/spatial-three": "3.4.1",
+    "@vitessce/zarr": "3.4.1"
   },
   "devDependencies": {
     "@types/react": "^18.0.28",