@vitessce/all 3.2.1 → 3.2.2

package/dist/{deflate-5a5940c6.js → deflate-432aacfa.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-68f84e2a.js";
-import { B as BaseDecoder } from "./index-f32678b1.js";
+import { B as BaseDecoder } from "./index-f665a5d4.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{hglib-40512a35.js → hglib-1bae5754.js}

@@ -1,6 +1,6 @@
 import React__default from "react";
 import ReactDOM__default from "react-dom";
-import { c as commonjsGlobal, o as objectAssign, g as getDefaultExportFromCjs, e as earcut, b as getAugmentedNamespace } from "./index-f32678b1.js";
+import { c as commonjsGlobal, o as objectAssign, g as getDefaultExportFromCjs, e as earcut, b as getAugmentedNamespace } from "./index-f665a5d4.js";
 function _mergeNamespaces(n, m) {
   for (var i = 0; i < m.length; i++) {
     const e = m[i];

package/dist/{index-f32678b1.js → index-f665a5d4.js}

@@ -155975,16 +155975,16 @@ async function getDecoder(fileDirectory) {
   const Decoder = await importFn();
   return new Decoder(fileDirectory);
 }
-addDecoder([void 0, 1], () => import("./raw-7ca3593c.js").then((m2) => m2.default));
-addDecoder(5, () => import("./lzw-39de0b59.js").then((m2) => m2.default));
+addDecoder([void 0, 1], () => import("./raw-8dc223b5.js").then((m2) => m2.default));
+addDecoder(5, () => import("./lzw-b35f334d.js").then((m2) => m2.default));
 addDecoder(6, () => {
   throw new Error("old style JPEG compression is not supported.");
 });
-addDecoder(7, () => import("./jpeg-9980f30b.js").then((m2) => m2.default));
-addDecoder([8, 32946], () => import("./deflate-5a5940c6.js").then((m2) => m2.default));
-addDecoder(32773, () => import("./packbits-85aa5ade.js").then((m2) => m2.default));
-addDecoder(34887, () => import("./lerc-38105022.js").then((m2) => m2.default));
-addDecoder(50001, () => import("./webimage-73569cb7.js").then((m2) => m2.default));
+addDecoder(7, () => import("./jpeg-b55e77c5.js").then((m2) => m2.default));
+addDecoder([8, 32946], () => import("./deflate-432aacfa.js").then((m2) => m2.default));
+addDecoder(32773, () => import("./packbits-6e275aa4.js").then((m2) => m2.default));
+addDecoder(34887, () => import("./lerc-2523b21e.js").then((m2) => m2.default));
+addDecoder(50001, () => import("./webimage-917679ff.js").then((m2) => m2.default));
 function copyNewSize(array2, width2, height2, samplesPerPixel = 1) {
   return new (Object.getPrototypeOf(array2)).constructor(width2 * height2 * samplesPerPixel);
 }
@@ -170522,6 +170522,67 @@ function makeBoundingBox(viewState) {
     viewport.unproject([0, viewport.height])
   ];
 }
+const TARGETS = [1, 2, 3, 4, 5, 10, 20, 25, 50, 100, 200, 250, 500, 1e3];
+const MIN_TARGET = TARGETS[0];
+const MAX_TARGET = TARGETS[TARGETS.length - 1];
+const SI_PREFIXES = [
+  { symbol: "Y", exponent: 24 },
+  { symbol: "Z", exponent: 21 },
+  { symbol: "E", exponent: 18 },
+  { symbol: "P", exponent: 15 },
+  { symbol: "T", exponent: 12 },
+  { symbol: "G", exponent: 9 },
+  { symbol: "M", exponent: 6 },
+  { symbol: "k", exponent: 3 },
+  { symbol: "h", exponent: 2 },
+  { symbol: "da", exponent: 1 },
+  { symbol: "", exponent: 0 },
+  { symbol: "d", exponent: -1 },
+  { symbol: "c", exponent: -2 },
+  { symbol: "m", exponent: -3 },
+  { symbol: "µ", exponent: -6 },
+  { symbol: "n", exponent: -9 },
+  { symbol: "p", exponent: -12 },
+  { symbol: "f", exponent: -15 },
+  { symbol: "a", exponent: -18 },
+  { symbol: "z", exponent: -21 },
+  { symbol: "y", exponent: -24 }
+];
+function sizeToMeters(size2, unit2) {
+  if (!unit2 || unit2 === "m") {
+    return size2;
+  }
+  if (unit2.length > 1) {
+    let unitPrefix = unit2.substring(0, unit2.length - 1);
+    if (unitPrefix === "u") {
+      unitPrefix = "µ";
+    }
+    const unitObj = SI_PREFIXES.find((p) => p.symbol === unitPrefix);
+    if (unitObj) {
+      return size2 * 10 ** unitObj.exponent;
+    }
+  }
+  throw new Error("Received unknown unit");
+}
+function snapValue(value2) {
+  let magnitude = 0;
+  if (value2 < MIN_TARGET || value2 > MAX_TARGET) {
+    magnitude = Math.floor(Math.log10(value2));
+  }
+  let snappedUnit = SI_PREFIXES.find(
+    (p) => p.exponent % 3 === 0 && p.exponent <= magnitude
+  );
+  let adjustedValue = value2 / 10 ** snappedUnit.exponent;
+  if (adjustedValue > 500 && adjustedValue <= 1e3) {
+    snappedUnit = SI_PREFIXES.find(
+      (p) => p.exponent % 3 === 0 && p.exponent <= magnitude + 3
+    );
+    adjustedValue = value2 / 10 ** snappedUnit.exponent;
+  }
+  const targetNewUnits = TARGETS.find((t4) => t4 > adjustedValue);
+  const targetOrigUnits = targetNewUnits * 10 ** snappedUnit.exponent;
+  return [targetOrigUnits, targetNewUnits, snappedUnit.symbol];
+}
 const fs$1$1 = `#define SHADER_NAME xr-layer-fragment-shader
 
 precision highp float;
@@ -171289,26 +171350,27 @@ const OverviewLayer = class extends CompositeLayer {
 OverviewLayer.layerName = "OverviewLayer";
 OverviewLayer.defaultProps = defaultProps$3;
 function getPosition$1(boundingBox, position2, length2) {
-  const viewLength = boundingBox[2][0] - boundingBox[0][0];
+  const viewWidth2 = boundingBox[2][0] - boundingBox[0][0];
+  const viewHeight2 = boundingBox[2][1] - boundingBox[0][1];
   switch (position2) {
     case "bottom-right": {
-      const yCoord = boundingBox[2][1] - (boundingBox[2][1] - boundingBox[0][1]) * length2;
-      const xLeftCoord = boundingBox[2][0] - viewLength * length2;
+      const yCoord = boundingBox[2][1] - viewHeight2 * length2;
+      const xLeftCoord = boundingBox[2][0] - viewWidth2 * length2;
       return [yCoord, xLeftCoord];
     }
     case "top-right": {
-      const yCoord = (boundingBox[2][1] - boundingBox[0][1]) * length2;
-      const xLeftCoord = boundingBox[2][0] - viewLength * length2;
+      const yCoord = boundingBox[0][1] + viewHeight2 * length2;
+      const xLeftCoord = boundingBox[2][0] - viewWidth2 * length2;
       return [yCoord, xLeftCoord];
     }
     case "top-left": {
-      const yCoord = (boundingBox[2][1] - boundingBox[0][1]) * length2;
-      const xLeftCoord = viewLength * length2;
+      const yCoord = boundingBox[0][1] + viewHeight2 * length2;
+      const xLeftCoord = boundingBox[0][0] + viewWidth2 * length2;
       return [yCoord, xLeftCoord];
     }
     case "bottom-left": {
-      const yCoord = boundingBox[2][1] - (boundingBox[2][1] - boundingBox[0][1]) * length2;
-      const xLeftCoord = viewLength * length2;
+      const yCoord = boundingBox[2][1] - viewHeight2 * length2;
+      const xLeftCoord = boundingBox[0][0] + viewWidth2 * length2;
       return [yCoord, xLeftCoord];
     }
     default: {
@@ -171326,11 +171388,12 @@ const defaultProps$2 = {
   unit: { type: "string", value: "", compare: true },
   size: { type: "number", value: 1, compare: true },
   position: { type: "string", value: "bottom-right", compare: true },
-  length: { type: "number", value: 0.085, compare: true }
+  length: { type: "number", value: 0.085, compare: true },
+  snap: { type: "boolean", value: false, compare: true }
 };
 const ScaleBarLayer = class extends CompositeLayer {
   renderLayers() {
-    const { id: id2, unit: unit2, size: size2, position: position2, viewState, length: length2 } = this.props;
+    const { id: id2, unit: unit2, size: size2, position: position2, viewState, length: length2, snap } = this.props;
     const boundingBox = makeBoundingBox(viewState);
     const { zoom: zoom2 } = viewState;
     const viewLength = boundingBox[2][0] - boundingBox[0][0];
@@ -171339,15 +171402,27 @@ const ScaleBarLayer = class extends CompositeLayer {
       2 ** (-zoom2 + 1.5),
       (boundingBox[2][1] - boundingBox[0][1]) * 7e-3
     );
-    const numUnits = barLength * size2;
+    let adjustedBarLength = barLength;
+    let displayNumber = (barLength * size2).toPrecision(5);
+    let displayUnit = unit2;
+    if (snap) {
+      const meterSize = sizeToMeters(size2, unit2);
+      const numUnits = barLength * meterSize;
+      const [snappedOrigUnits, snappedNewUnits, snappedUnitPrefix] = snapValue(numUnits);
+      adjustedBarLength = snappedOrigUnits / meterSize;
+      displayNumber = snappedNewUnits;
+      displayUnit = `${snappedUnitPrefix}m`;
+    }
     const [yCoord, xLeftCoord] = getPosition$1(boundingBox, position2, length2);
+    const xRightCoord = xLeftCoord + barLength;
+    const isLeft = position2.endsWith("-left");
     const lengthBar = new LineLayer({
       id: `scale-bar-length-${id2}`,
       coordinateSystem: COORDINATE_SYSTEM.CARTESIAN,
       data: [
         [
-          [xLeftCoord, yCoord],
-          [xLeftCoord + barLength, yCoord]
+          [isLeft ? xLeftCoord : xRightCoord - adjustedBarLength, yCoord],
+          [isLeft ? xLeftCoord + adjustedBarLength : xRightCoord, yCoord]
         ]
       ],
       getSourcePosition: (d) => d[0],
@@ -171360,8 +171435,14 @@ const ScaleBarLayer = class extends CompositeLayer {
       coordinateSystem: COORDINATE_SYSTEM.CARTESIAN,
       data: [
         [
-          [xLeftCoord, yCoord - barHeight],
-          [xLeftCoord, yCoord + barHeight]
+          [
+            isLeft ? xLeftCoord : xRightCoord - adjustedBarLength,
+            yCoord - barHeight
+          ],
+          [
+            isLeft ? xLeftCoord : xRightCoord - adjustedBarLength,
+            yCoord + barHeight
+          ]
         ]
       ],
       getSourcePosition: (d) => d[0],
@@ -171374,8 +171455,14 @@ const ScaleBarLayer = class extends CompositeLayer {
       coordinateSystem: COORDINATE_SYSTEM.CARTESIAN,
       data: [
         [
-          [xLeftCoord + barLength, yCoord - barHeight],
-          [xLeftCoord + barLength, yCoord + barHeight]
+          [
+            isLeft ? xLeftCoord + adjustedBarLength : xRightCoord,
+            yCoord - barHeight
+          ],
+          [
+            isLeft ? xLeftCoord + adjustedBarLength : xRightCoord,
+            yCoord + barHeight
+          ]
         ]
       ],
       getSourcePosition: (d) => d[0],
@@ -171388,8 +171475,11 @@ const ScaleBarLayer = class extends CompositeLayer {
       coordinateSystem: COORDINATE_SYSTEM.CARTESIAN,
       data: [
         {
-          text: numUnits.toPrecision(5) + unit2,
-          position: [xLeftCoord + barLength * 0.5, yCoord + barHeight * 4]
+          text: `${displayNumber}${displayUnit}`,
+          position: [
+            isLeft ? xLeftCoord + barLength * 0.5 : xRightCoord - barLength * 0.5,
+            yCoord + barHeight * 4
+          ]
         }
       ],
       getColor: [220, 220, 220, 255],
@@ -171398,7 +171488,7 @@ const ScaleBarLayer = class extends CompositeLayer {
       sizeUnits: "meters",
       sizeScale: 2 ** -zoom2,
       characterSet: [
-        ...unit2.split(""),
+        ...displayUnit.split(""),
         ...range$5(10).map((i2) => String(i2)),
         ".",
         "e",
@@ -192514,6 +192604,7 @@ let Spatial$1 = class Spatial extends AbstractSpatialOrScatterplot {
           id: "scalebar-layer",
           unit: unit2,
           size: size2,
+          snap: true,
           viewState: { ...viewState, width: width2, height: height2 }
         });
       }
@@ -193711,6 +193802,7 @@ class Spatial2 extends AbstractSpatialOrScatterplot {
       id: "scalebar-layer",
       unit: "um",
       size: 1,
+      snap: true,
       viewState: { ...viewState, width: width2, height: height2 }
     });
   }
@@ -203667,7 +203759,7 @@ const HIGLASS_BUNDLE_VERSION = "1.11.13";
 const HIGLASS_CSS_URL = `https://unpkg.com/${HIGLASS_PKG_NAME}@${HIGLASS_BUNDLE_VERSION}/dist/hglib.css`;
 register({ dataFetcher: ZarrMultivecDataFetcher, config: ZarrMultivecDataFetcher.config }, { pluginType: "dataFetcher" });
 const LazyHiGlassComponent = React__default.lazy(async () => {
-  const { HiGlassComponent } = await import("./hglib-40512a35.js").then((n3) => n3.h);
+  const { HiGlassComponent } = await import("./hglib-1bae5754.js").then((n3) => n3.h);
   return { default: HiGlassComponent };
 });
 const HG_SIZE = 800;

package/dist/index.js

@@ -1,4 +1,4 @@
-import { f, P, h, d, V, z } from "./index-f32678b1.js";
+import { f, P, h, d, V, z } from "./index-f665a5d4.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{jpeg-9980f30b.js → jpeg-b55e77c5.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-f32678b1.js";
+import { B as BaseDecoder } from "./index-f665a5d4.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{lerc-38105022.js → lerc-2523b21e.js}

@@ -1,5 +1,5 @@
 import { i as inflate_1 } from "./pako.esm-68f84e2a.js";
-import { g as getDefaultExportFromCjs, B as BaseDecoder, L as LercParameters, a as LercAddCompression } from "./index-f32678b1.js";
+import { g as getDefaultExportFromCjs, B as BaseDecoder, L as LercParameters, a as LercAddCompression } from "./index-f665a5d4.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{lzw-39de0b59.js → lzw-b35f334d.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-f32678b1.js";
+import { B as BaseDecoder } from "./index-f665a5d4.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{packbits-85aa5ade.js → packbits-6e275aa4.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-f32678b1.js";
+import { B as BaseDecoder } from "./index-f665a5d4.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{raw-7ca3593c.js → raw-8dc223b5.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-f32678b1.js";
+import { B as BaseDecoder } from "./index-f665a5d4.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/dist/{webimage-73569cb7.js → webimage-917679ff.js}

@@ -1,4 +1,4 @@
-import { B as BaseDecoder } from "./index-f32678b1.js";
+import { B as BaseDecoder } from "./index-f665a5d4.js";
 import "react";
 import "@vitessce/vit-s";
 import "react-dom";

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vitessce/all",
-  "version": "3.2.1",
+  "version": "3.2.2",
   "author": "Gehlenborg Lab",
   "homepage": "http://vitessce.io",
   "repository": {
@@ -18,27 +18,27 @@
   "dependencies": {
     "@material-ui/core": "~4.12.3",
     "zod": "^3.21.4",
-    "@vitessce/constants-internal": "3.2.1",
-    "@vitessce/csv": "3.2.1",
-    "@vitessce/description": "3.2.1",
-    "@vitessce/feature-list": "3.2.1",
-    "@vitessce/genomic-profiles": "3.2.1",
-    "@vitessce/heatmap": "3.2.1",
-    "@vitessce/json": "3.2.1",
-    "@vitessce/layer-controller": "3.2.1",
-    "@vitessce/layer-controller-beta": "3.2.1",
-    "@vitessce/obs-sets-manager": "3.2.1",
-    "@vitessce/ome-tiff": "3.2.1",
-    "@vitessce/plugins": "3.2.1",
-    "@vitessce/scatterplot-embedding": "3.2.1",
-    "@vitessce/scatterplot-gating": "3.2.1",
-    "@vitessce/schemas": "3.2.1",
-    "@vitessce/spatial": "3.2.1",
-    "@vitessce/spatial-beta": "3.2.1",
-    "@vitessce/statistical-plots": "3.2.1",
-    "@vitessce/status": "3.2.1",
-    "@vitessce/vit-s": "3.2.1",
-    "@vitessce/zarr": "3.2.1"
+    "@vitessce/constants-internal": "3.2.2",
+    "@vitessce/description": "3.2.2",
+    "@vitessce/csv": "3.2.2",
+    "@vitessce/genomic-profiles": "3.2.2",
+    "@vitessce/feature-list": "3.2.2",
+    "@vitessce/json": "3.2.2",
+    "@vitessce/heatmap": "3.2.2",
+    "@vitessce/layer-controller": "3.2.2",
+    "@vitessce/layer-controller-beta": "3.2.2",
+    "@vitessce/obs-sets-manager": "3.2.2",
+    "@vitessce/ome-tiff": "3.2.2",
+    "@vitessce/plugins": "3.2.2",
+    "@vitessce/scatterplot-embedding": "3.2.2",
+    "@vitessce/scatterplot-gating": "3.2.2",
+    "@vitessce/schemas": "3.2.2",
+    "@vitessce/spatial": "3.2.2",
+    "@vitessce/statistical-plots": "3.2.2",
+    "@vitessce/spatial-beta": "3.2.2",
+    "@vitessce/vit-s": "3.2.2",
+    "@vitessce/status": "3.2.2",
+    "@vitessce/zarr": "3.2.2"
   },
   "devDependencies": {
     "@types/react": "^18.0.28",