@vitessce/all 3.1.3 → 3.2.0

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Files changed (18) hide show
  1. package/dist/{deflate-e164f5b4.js → deflate-6b735acc.js} +1 -1
  2. package/dist/{hglib-27190533.js → hglib-2b8cd9d8.js} +1 -1
  3. package/dist/{index-61ee101c.js → index-d4cd1fef.js} +6296 -894
  4. package/dist/index.js +1 -1
  5. package/dist/{jpeg-eaa82c98.js → jpeg-3b40fe93.js} +1 -1
  6. package/dist/{lerc-0c45509f.js → lerc-e0d6f9e6.js} +1 -1
  7. package/dist/{lzw-8aa1e0b3.js → lzw-2b4715b3.js} +1 -1
  8. package/dist/{packbits-ad4b66a3.js → packbits-494352d8.js} +1 -1
  9. package/dist/{raw-cb4a4ae9.js → raw-ed9deb25.js} +1 -1
  10. package/dist/{webimage-3d222f28.js → webimage-f9e0ebc3.js} +1 -1
  11. package/dist-tsc/base-plugins.d.ts +38 -2
  12. package/dist-tsc/base-plugins.d.ts.map +1 -1
  13. package/dist-tsc/base-plugins.js +56 -7
  14. package/dist-tsc/joint-file-types.d.ts.map +1 -1
  15. package/dist-tsc/joint-file-types.js +41 -0
  16. package/package.json +22 -20
  17. package/src/base-plugins.ts +61 -4
  18. package/src/joint-file-types.ts +42 -0
package/src/joint-file-types.ts CHANGED
@@ -8,6 +8,12 @@ type BaseFileDef = {
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  coordinationValues: Record<string, string>;
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  };
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+ const expectedCoordinationTypes = [
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+ 'obsType', 'featureType', 'featureValueType',
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+ 'featureLabelsType', 'obsLabelsType',
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+ 'embeddingType',
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+ ];
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+
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  export function expandAnndataZarr(fileDef: z.infer<typeof latestFileDefSchema>) {
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  const baseFileDef: BaseFileDef = {
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  url: fileDef.url,
@@ -19,6 +25,12 @@ export function expandAnndataZarr(fileDef: z.infer<typeof latestFileDefSchema>)
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  featureValueType: fileDef.coordinationValues?.featureValueType || 'expression',
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  },
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  };
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+ const extraCoordinationValues: Record<string, any> = {};
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+ Object.entries(baseFileDef.coordinationValues).forEach(([key, value]) => {
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+ if (!expectedCoordinationTypes.includes(key)) {
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+ extraCoordinationValues[key] = value;
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+ }
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+ });
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  const { options = {} } = fileDef;
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  return [
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  // obsFeatureMatrix
@@ -27,6 +39,7 @@ export function expandAnndataZarr(fileDef: z.infer<typeof latestFileDefSchema>)
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  fileType: FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR,
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  options: options.obsFeatureMatrix,
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  coordinationValues: {
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+ ...extraCoordinationValues,
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  obsType: baseFileDef.coordinationValues.obsType,
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  featureType: baseFileDef.coordinationValues.featureType,
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  featureValueType: baseFileDef.coordinationValues.featureValueType,
@@ -38,6 +51,27 @@ export function expandAnndataZarr(fileDef: z.infer<typeof latestFileDefSchema>)
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  fileType: FileType.OBS_SETS_ANNDATA_ZARR,
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  options: options.obsSets,
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  coordinationValues: {
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+ ...extraCoordinationValues,
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+ obsType: baseFileDef.coordinationValues.obsType,
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+ },
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+ }] : []),
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+ // obsSpots
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+ ...(options.obsSpots ? [{
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+ ...baseFileDef,
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+ fileType: FileType.OBS_SPOTS_ANNDATA_ZARR,
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+ options: options.obsSpots,
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+ coordinationValues: {
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+ ...extraCoordinationValues,
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+ obsType: baseFileDef.coordinationValues.obsType,
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+ },
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+ }] : []),
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+ // obsPoints
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+ ...(options.obsPoints ? [{
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+ ...baseFileDef,
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+ fileType: FileType.OBS_POINTS_ANNDATA_ZARR,
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+ options: options.obsPoints,
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+ coordinationValues: {
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+ ...extraCoordinationValues,
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  obsType: baseFileDef.coordinationValues.obsType,
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  },
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  }] : []),
@@ -47,6 +81,7 @@ export function expandAnndataZarr(fileDef: z.infer<typeof latestFileDefSchema>)
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  fileType: FileType.OBS_LOCATIONS_ANNDATA_ZARR,
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  options: options.obsLocations,
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  coordinationValues: {
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+ ...extraCoordinationValues,
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  obsType: baseFileDef.coordinationValues.obsType,
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  },
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  }] : []),
@@ -56,6 +91,7 @@ export function expandAnndataZarr(fileDef: z.infer<typeof latestFileDefSchema>)
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  fileType: FileType.OBS_SEGMENTATIONS_ANNDATA_ZARR,
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  options: options.obsSegmentations,
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  coordinationValues: {
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+ ...extraCoordinationValues,
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  obsType: baseFileDef.coordinationValues.obsType,
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  },
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  }] : []),
@@ -71,6 +107,7 @@ export function expandAnndataZarr(fileDef: z.infer<typeof latestFileDefSchema>)
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  dims: oe.dims,
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  },
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  coordinationValues: {
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+ ...extraCoordinationValues,
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  obsType: baseFileDef.coordinationValues.obsType,
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  // Move embedding type property out of options and into coordinationValues.
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  embeddingType: oe.embeddingType,
@@ -81,6 +118,7 @@ export function expandAnndataZarr(fileDef: z.infer<typeof latestFileDefSchema>)
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  fileType: FileType.OBS_EMBEDDING_ANNDATA_ZARR,
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  options: options.obsEmbedding,
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  coordinationValues: {
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+ ...extraCoordinationValues,
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  obsType: baseFileDef.coordinationValues.obsType,
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  embeddingType: baseFileDef.coordinationValues.embeddingType,
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  },
@@ -97,6 +135,7 @@ export function expandAnndataZarr(fileDef: z.infer<typeof latestFileDefSchema>)
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  path: ol.path,
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  },
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  coordinationValues: {
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+ ...extraCoordinationValues,
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  obsType: baseFileDef.coordinationValues.obsType,
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  // Move obsLabels type property out of options and into coordinationValues.
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  obsLabelsType: ol.obsLabelsType,
@@ -107,6 +146,7 @@ export function expandAnndataZarr(fileDef: z.infer<typeof latestFileDefSchema>)
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  fileType: FileType.OBS_LABELS_ANNDATA_ZARR,
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  options: options.obsLabels,
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  coordinationValues: {
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+ ...extraCoordinationValues,
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  obsType: baseFileDef.coordinationValues.obsType,
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  obsLabelsType: baseFileDef.coordinationValues.obsLabelsType,
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  },
@@ -123,6 +163,7 @@ export function expandAnndataZarr(fileDef: z.infer<typeof latestFileDefSchema>)
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  path: fl.path,
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  },
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  coordinationValues: {
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+ ...extraCoordinationValues,
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  featureType: baseFileDef.coordinationValues.featureType,
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  // Move featureLabels type property out of options and into coordinationValues.
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  featureLabelsType: fl.featureLabelsType,
@@ -133,6 +174,7 @@ export function expandAnndataZarr(fileDef: z.infer<typeof latestFileDefSchema>)
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  fileType: FileType.FEATURE_LABELS_ANNDATA_ZARR,
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  options: options.featureLabels,
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  coordinationValues: {
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+ ...extraCoordinationValues,
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  featureType: baseFileDef.coordinationValues.featureType,
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  featureLabelsType: baseFileDef.coordinationValues.featureLabelsType,
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  },