@vitessce/all 2.0.3-beta.0 → 3.0.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/deflate-f57b3163.js +13 -0
- package/dist/hglib-1422f224.js +138925 -0
- package/dist/index-3f1c1764.js +258272 -0
- package/dist/index.js +12 -2
- package/dist/jpeg-e740c9a5.js +840 -0
- package/dist/lerc-01e6c4d8.js +2006 -0
- package/dist/lzw-865bd058.js +128 -0
- package/dist/packbits-d4191efd.js +30 -0
- package/dist/pako.esm-68f84e2a.js +4022 -0
- package/dist/raw-3c693341.js +12 -0
- package/dist/webimage-83da2258.js +32 -0
- package/dist-tsc/Vitessce.d.ts +2 -0
- package/dist-tsc/Vitessce.d.ts.map +1 -0
- package/dist-tsc/Vitessce.js +41 -0
- package/dist-tsc/base-plugins.d.ts +854 -0
- package/dist-tsc/base-plugins.d.ts.map +1 -0
- package/dist-tsc/base-plugins.js +191 -0
- package/dist-tsc/index.d.ts +4 -0
- package/dist-tsc/index.d.ts.map +1 -0
- package/dist-tsc/index.js +3 -0
- package/dist-tsc/joint-file-types-legacy.d.ts +226 -0
- package/dist-tsc/joint-file-types-legacy.d.ts.map +1 -0
- package/dist-tsc/joint-file-types-legacy.js +266 -0
- package/dist-tsc/joint-file-types-legacy.test.d.ts +2 -0
- package/dist-tsc/joint-file-types-legacy.test.d.ts.map +1 -0
- package/dist-tsc/joint-file-types-legacy.test.js +401 -0
- package/dist-tsc/joint-file-types.d.ts +4 -0
- package/dist-tsc/joint-file-types.d.ts.map +1 -0
- package/dist-tsc/joint-file-types.js +127 -0
- package/dist-tsc/joint-file-types.test.d.ts +2 -0
- package/dist-tsc/joint-file-types.test.d.ts.map +1 -0
- package/dist-tsc/joint-file-types.test.js +128 -0
- package/dist-tsc/latest-config-schema.test.d.ts +2 -0
- package/dist-tsc/latest-config-schema.test.d.ts.map +1 -0
- package/dist-tsc/latest-config-schema.test.js +19 -0
- package/package.json +39 -21
- package/src/Vitessce.tsx +74 -0
- package/src/base-plugins.ts +362 -0
- package/src/index.ts +8 -0
- package/src/joint-file-types-legacy.test.ts +413 -0
- package/src/joint-file-types-legacy.ts +284 -0
- package/src/joint-file-types.test.ts +132 -0
- package/src/joint-file-types.ts +142 -0
- package/src/latest-config-schema.test.ts +26 -0
- package/dist/setup.js +0 -96
@@ -0,0 +1,362 @@
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/* eslint-disable max-len */
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import type { ComponentType } from 'react';
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import {
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FileType,
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DataType,
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ViewType,
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CoordinationType,
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COMPONENT_COORDINATION_TYPES,
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} from '@vitessce/constants-internal';
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import {
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PluginFileType,
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PluginJointFileType,
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PluginViewType,
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PluginCoordinationType,
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} from '@vitessce/plugins';
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import type {
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DataLoader,
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DataSource,
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} from '@vitessce/plugins';
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import {
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z,
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obsEmbeddingCsvSchema,
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obsSetsCsvSchema,
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obsLocationsCsvSchema,
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obsLabelsCsvSchema,
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featureLabelsCsvSchema,
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obsSetsAnndataSchema,
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obsEmbeddingAnndataSchema,
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obsLocationsAnndataSchema,
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obsLabelsAnndataSchema,
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obsFeatureMatrixAnndataSchema,
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obsSegmentationsAnndataSchema,
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featureLabelsAnndataSchema,
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rasterJsonSchema,
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anndataZarrSchema,
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anndataCellsZarrSchema,
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anndataCellSetsZarrSchema,
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anndataExpressionMatrixZarrSchema,
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cellsJsonSchema,
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imageOmeZarrSchema,
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imageOmeTiffSchema,
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obsSetPath,
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rgbArray,
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obsSetsSchema,
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imageLayerObj,
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cellsLayerObj,
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neighborhoodsLayerObj,
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moleculesLayerObj,
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} from '@vitessce/schemas';
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// Register view type plugins
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import { DescriptionSubscriber } from '@vitessce/description';
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import { ObsSetsManagerSubscriber } from '@vitessce/obs-sets-manager';
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import { EmbeddingScatterplotSubscriber } from '@vitessce/scatterplot-embedding';
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import { GatingSubscriber } from '@vitessce/scatterplot-gating';
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import { SpatialSubscriber } from '@vitessce/spatial';
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import { HeatmapSubscriber } from '@vitessce/heatmap';
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import { FeatureListSubscriber } from '@vitessce/feature-list';
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import { LayerControllerSubscriber } from '@vitessce/layer-controller';
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import { StatusSubscriber } from '@vitessce/status';
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import { HiGlassSubscriber, GenomicProfilesSubscriber } from '@vitessce/genomic-profiles';
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import {
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CellSetExpressionPlotSubscriber,
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CellSetSizesPlotSubscriber,
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ExpressionHistogramSubscriber,
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} from '@vitessce/statistical-plots';
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// Register file type plugins
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import {
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// CSV
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CsvSource,
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ObsSetsCsvLoader,
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ObsEmbeddingCsvLoader,
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ObsLocationsCsvLoader,
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ObsLabelsCsvLoader,
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ObsFeatureMatrixCsvLoader,
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FeatureLabelsCsvLoader,
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} from '@vitessce/csv';
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import {
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// JSON
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JsonSource,
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JsonLoader,
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ObsSegmentationsJsonLoader,
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ObsSetsJsonLoader,
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// Legacy
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RasterJsonAsImageLoader,
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RasterJsonAsObsSegmentationsLoader,
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ClustersJsonAsObsFeatureMatrixLoader,
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GenesJsonAsObsFeatureMatrixLoader,
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CellsJsonAsObsLabelsLoader,
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CellsJsonAsObsEmbeddingLoader,
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CellsJsonAsObsLocationsLoader,
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CellsJsonAsObsSegmentationsLoader,
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MoleculesJsonAsObsLocationsLoader,
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MoleculesJsonAsObsLabelsLoader,
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} from '@vitessce/json';
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import {
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// AnnData
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AnnDataSource,
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ObsFeatureMatrixAnndataLoader,
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ObsEmbeddingAnndataLoader,
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ObsLocationsAnndataLoader,
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ObsSegmentationsAnndataLoader,
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ObsSetsAnndataLoader,
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ObsLabelsAnndataLoader,
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FeatureLabelsAnndataLoader,
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// MuData
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MuDataSource,
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// OME
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OmeZarrLoader,
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// Legacy
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ZarrDataSource,
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MatrixZarrAsObsFeatureMatrixLoader,
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GenomicProfilesZarrLoader,
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} from '@vitessce/zarr';
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import {
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OmeTiffAsObsSegmentationsLoader,
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OmeTiffLoader,
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OmeTiffSource,
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} from '@vitessce/ome-tiff';
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// Joint file types
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import {
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expandAnndataZarr,
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} from './joint-file-types.js';
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import {
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expandAnndataCellSetsZarr,
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expandAnndataCellsZarr,
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expandAnndataExpressionMatrixZarr,
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expandCellSetsJson,
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expandCellsJson,
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expandClustersJson,
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expandExpressionMatrixZarr,
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expandGenesJson,
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expandMoleculesJson,
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expandRasterJson,
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expandRasterOmeZarr,
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} from './joint-file-types-legacy.js';
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// Helper function to use COMPONENT_COORDINATION_TYPES.
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function makeViewType(name: string, component: any) {
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return new PluginViewType(name, component as ComponentType, COMPONENT_COORDINATION_TYPES[name]);
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}
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function makeFileType<T1 extends DataLoader, T2 extends DataSource>(name: string, dataType: string, dataLoaderClass: any, dataSourceClass: any, optionsSchema: z.ZodTypeAny) {
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return new PluginFileType(name, dataType, dataLoaderClass as T1, dataSourceClass as T2, optionsSchema);
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}
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export const baseViewTypes = [
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makeViewType(ViewType.DESCRIPTION, DescriptionSubscriber),
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makeViewType(ViewType.OBS_SETS, ObsSetsManagerSubscriber),
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makeViewType(ViewType.SCATTERPLOT, EmbeddingScatterplotSubscriber),
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makeViewType(ViewType.GATING, GatingSubscriber),
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makeViewType(ViewType.SPATIAL, SpatialSubscriber),
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makeViewType(ViewType.HEATMAP, HeatmapSubscriber),
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makeViewType(ViewType.FEATURE_LIST, FeatureListSubscriber),
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makeViewType(ViewType.LAYER_CONTROLLER, LayerControllerSubscriber),
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makeViewType(ViewType.STATUS, StatusSubscriber),
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makeViewType(ViewType.OBS_SET_FEATURE_VALUE_DISTRIBUTION, CellSetExpressionPlotSubscriber),
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makeViewType(ViewType.OBS_SET_SIZES, CellSetSizesPlotSubscriber),
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makeViewType(ViewType.FEATURE_VALUE_HISTOGRAM, ExpressionHistogramSubscriber),
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makeViewType('higlass', HiGlassSubscriber),
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makeViewType(ViewType.GENOMIC_PROFILES, GenomicProfilesSubscriber),
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];
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export const baseFileTypes = [
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// All CSV file types
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makeFileType(FileType.OBS_SETS_CSV, DataType.OBS_SETS, ObsSetsCsvLoader, CsvSource, obsSetsCsvSchema),
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makeFileType(FileType.OBS_EMBEDDING_CSV, DataType.OBS_EMBEDDING, ObsEmbeddingCsvLoader, CsvSource, obsEmbeddingCsvSchema),
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makeFileType(FileType.OBS_LOCATIONS_CSV, DataType.OBS_LOCATIONS, ObsLocationsCsvLoader, CsvSource, obsLocationsCsvSchema),
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makeFileType(FileType.OBS_LABELS_CSV, DataType.OBS_LABELS, ObsLabelsCsvLoader, CsvSource, obsLabelsCsvSchema),
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makeFileType(FileType.OBS_FEATURE_MATRIX_CSV, DataType.OBS_FEATURE_MATRIX, ObsFeatureMatrixCsvLoader, CsvSource, z.null()),
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makeFileType(FileType.FEATURE_LABELS_CSV, DataType.FEATURE_LABELS, FeatureLabelsCsvLoader, CsvSource, featureLabelsCsvSchema),
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// All JSON file types
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makeFileType(FileType.OBS_SEGMENTATIONS_JSON, DataType.OBS_SEGMENTATIONS, ObsSegmentationsJsonLoader, JsonSource, z.null()),
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makeFileType(FileType.OBS_SETS_JSON, DataType.OBS_SETS, ObsSetsJsonLoader, JsonSource, z.null()),
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// All AnnData file types
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makeFileType(FileType.OBS_SETS_ANNDATA_ZARR, DataType.OBS_SETS, ObsSetsAnndataLoader, AnnDataSource, obsSetsAnndataSchema),
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makeFileType(FileType.OBS_EMBEDDING_ANNDATA_ZARR, DataType.OBS_EMBEDDING, ObsEmbeddingAnndataLoader, AnnDataSource, obsEmbeddingAnndataSchema),
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makeFileType(FileType.OBS_LOCATIONS_ANNDATA_ZARR, DataType.OBS_LOCATIONS, ObsLocationsAnndataLoader, AnnDataSource, obsLocationsAnndataSchema),
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makeFileType(FileType.OBS_LABELS_ANNDATA_ZARR, DataType.OBS_LABELS, ObsLabelsAnndataLoader, AnnDataSource, obsLabelsAnndataSchema),
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makeFileType(FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR, DataType.OBS_FEATURE_MATRIX, ObsFeatureMatrixAnndataLoader, AnnDataSource, obsFeatureMatrixAnndataSchema),
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makeFileType(FileType.OBS_SEGMENTATIONS_ANNDATA_ZARR, DataType.OBS_SEGMENTATIONS, ObsSegmentationsAnndataLoader, AnnDataSource, obsSegmentationsAnndataSchema),
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makeFileType(FileType.FEATURE_LABELS_ANNDATA_ZARR, DataType.FEATURE_LABELS, FeatureLabelsAnndataLoader, AnnDataSource, featureLabelsAnndataSchema),
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// All MuData file types
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makeFileType(FileType.OBS_SETS_MUDATA_ZARR, DataType.OBS_SETS, ObsSetsAnndataLoader, MuDataSource, obsSetsAnndataSchema),
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makeFileType(FileType.OBS_EMBEDDING_MUDATA_ZARR, DataType.OBS_EMBEDDING, ObsEmbeddingAnndataLoader, MuDataSource, obsEmbeddingAnndataSchema),
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makeFileType(FileType.OBS_LOCATIONS_MUDATA_ZARR, DataType.OBS_LOCATIONS, ObsLocationsAnndataLoader, MuDataSource, obsLocationsAnndataSchema),
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makeFileType(FileType.OBS_LABELS_MUDATA_ZARR, DataType.OBS_LABELS, ObsLabelsAnndataLoader, MuDataSource, obsLabelsAnndataSchema),
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makeFileType(FileType.OBS_FEATURE_MATRIX_MUDATA_ZARR, DataType.OBS_FEATURE_MATRIX, ObsFeatureMatrixAnndataLoader, MuDataSource, obsFeatureMatrixAnndataSchema),
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makeFileType(FileType.OBS_SEGMENTATIONS_MUDATA_ZARR, DataType.OBS_SEGMENTATIONS, ObsSegmentationsAnndataLoader, MuDataSource, obsSegmentationsAnndataSchema),
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makeFileType(FileType.FEATURE_LABELS_MUDATA_ZARR, DataType.FEATURE_LABELS, FeatureLabelsAnndataLoader, MuDataSource, featureLabelsAnndataSchema),
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// All OME file types
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makeFileType(FileType.IMAGE_OME_ZARR, DataType.IMAGE, OmeZarrLoader, ZarrDataSource, imageOmeZarrSchema),
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makeFileType(FileType.IMAGE_OME_TIFF, DataType.IMAGE, OmeTiffLoader, OmeTiffSource, imageOmeTiffSchema),
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makeFileType(FileType.OBS_SEGMENTATIONS_OME_TIFF, DataType.OBS_SEGMENTATIONS, OmeTiffAsObsSegmentationsLoader, OmeTiffSource, imageOmeZarrSchema),
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// All legacy file types
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makeFileType(FileType.OBS_FEATURE_MATRIX_EXPRESSION_MATRIX_ZARR, DataType.OBS_FEATURE_MATRIX, MatrixZarrAsObsFeatureMatrixLoader, ZarrDataSource, z.null()),
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makeFileType(FileType.IMAGE_RASTER_JSON, DataType.IMAGE, RasterJsonAsImageLoader, JsonSource, rasterJsonSchema),
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makeFileType(FileType.OBS_SEGMENTATIONS_RASTER_JSON, DataType.OBS_SEGMENTATIONS, RasterJsonAsObsSegmentationsLoader, JsonSource, rasterJsonSchema),
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makeFileType(FileType.OBS_SETS_CELL_SETS_JSON, DataType.OBS_SETS, ObsSetsJsonLoader, JsonSource, z.null()),
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makeFileType(FileType.OBS_FEATURE_MATRIX_CLUSTERS_JSON, DataType.OBS_FEATURE_MATRIX, ClustersJsonAsObsFeatureMatrixLoader, JsonSource, z.null()),
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makeFileType(FileType.OBS_FEATURE_MATRIX_GENES_JSON, DataType.OBS_FEATURE_MATRIX, GenesJsonAsObsFeatureMatrixLoader, JsonSource, z.null()),
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makeFileType(FileType.OBS_LABELS_CELLS_JSON, DataType.OBS_LABELS, CellsJsonAsObsLabelsLoader, JsonSource, z.null()),
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makeFileType(FileType.OBS_EMBEDDING_CELLS_JSON, DataType.OBS_EMBEDDING, CellsJsonAsObsEmbeddingLoader, JsonSource, z.null()),
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makeFileType(FileType.OBS_LOCATIONS_CELLS_JSON, DataType.OBS_LOCATIONS, CellsJsonAsObsLocationsLoader, JsonSource, z.null()),
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makeFileType(FileType.OBS_SEGMENTATIONS_CELLS_JSON, DataType.OBS_SEGMENTATIONS, CellsJsonAsObsSegmentationsLoader, JsonSource, z.null()),
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makeFileType(FileType.OBS_LOCATIONS_MOLECULES_JSON, DataType.OBS_LOCATIONS, MoleculesJsonAsObsLocationsLoader, JsonSource, z.null()),
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makeFileType(FileType.OBS_LABELS_MOLECULES_JSON, DataType.OBS_LABELS, MoleculesJsonAsObsLabelsLoader, JsonSource, z.null()),
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makeFileType(FileType.NEIGHBORHOODS_JSON, DataType.NEIGHBORHOODS, JsonLoader, JsonSource, z.null()),
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makeFileType(FileType.GENOMIC_PROFILES_ZARR, DataType.GENOMIC_PROFILES, GenomicProfilesZarrLoader, ZarrDataSource, z.null()),
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];
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export const baseJointFileTypes = [
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new PluginJointFileType(FileType.ANNDATA_ZARR, expandAnndataZarr, anndataZarrSchema),
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// For legacy file types:
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new PluginJointFileType(FileType.ANNDATA_CELLS_ZARR, expandAnndataCellsZarr, anndataCellsZarrSchema),
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new PluginJointFileType(FileType.ANNDATA_CELL_SETS_ZARR, expandAnndataCellSetsZarr, anndataCellSetsZarrSchema),
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new PluginJointFileType(FileType.ANNDATA_EXPRESSION_MATRIX_ZARR, expandAnndataExpressionMatrixZarr, anndataExpressionMatrixZarrSchema),
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new PluginJointFileType(FileType.EXPRESSION_MATRIX_ZARR, expandExpressionMatrixZarr, z.null()),
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new PluginJointFileType(FileType.RASTER_JSON, expandRasterJson, rasterJsonSchema),
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new PluginJointFileType(FileType.RASTER_OME_ZARR, expandRasterOmeZarr, z.null()),
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new PluginJointFileType(FileType.CELL_SETS_JSON, expandCellSetsJson, z.null()),
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new PluginJointFileType(FileType.CLUSTERS_JSON, expandClustersJson, z.null()),
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new PluginJointFileType(FileType.GENES_JSON, expandGenesJson, z.null()),
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new PluginJointFileType(FileType.CELLS_JSON, expandCellsJson, cellsJsonSchema),
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new PluginJointFileType(FileType.MOLECULES_JSON, expandMoleculesJson, z.null()),
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];
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// TODO: should these schemas be imported from a common location in package/ rather than here in packages/main/?
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// That would allow view implementations to depend on them for type checking and their default values.
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export const baseCoordinationTypes = [
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new PluginCoordinationType(CoordinationType.DATASET, null, z.string().nullable()),
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new PluginCoordinationType(CoordinationType.OBS_TYPE, 'cell', z.string()),
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new PluginCoordinationType(CoordinationType.FEATURE_TYPE, 'gene', z.string()),
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new PluginCoordinationType(CoordinationType.FEATURE_VALUE_TYPE, 'expression', z.string()),
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new PluginCoordinationType(CoordinationType.OBS_LABELS_TYPE, null, z.string().nullable()),
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new PluginCoordinationType(CoordinationType.EMBEDDING_ZOOM, null, z.number().nullable()),
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new PluginCoordinationType(CoordinationType.EMBEDDING_ROTATION, 0, z.number().nullable()),
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new PluginCoordinationType(CoordinationType.EMBEDDING_TARGET_X, null, z.number().nullable()),
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new PluginCoordinationType(CoordinationType.EMBEDDING_TARGET_Y, null, z.number().nullable()),
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|
+
new PluginCoordinationType(CoordinationType.EMBEDDING_TARGET_Z, 0, z.number().nullable()),
|
243
|
+
new PluginCoordinationType(CoordinationType.EMBEDDING_TYPE, null, z.string().nullable()),
|
244
|
+
new PluginCoordinationType(
|
245
|
+
CoordinationType.EMBEDDING_OBS_SET_POLYGONS_VISIBLE,
|
246
|
+
false,
|
247
|
+
z.boolean(),
|
248
|
+
),
|
249
|
+
new PluginCoordinationType(CoordinationType.EMBEDDING_OBS_SET_LABELS_VISIBLE, false, z.boolean()),
|
250
|
+
new PluginCoordinationType(CoordinationType.EMBEDDING_OBS_SET_LABEL_SIZE, 14, z.number()),
|
251
|
+
new PluginCoordinationType(CoordinationType.EMBEDDING_OBS_RADIUS, 1, z.number()),
|
252
|
+
new PluginCoordinationType(CoordinationType.EMBEDDING_OBS_OPACITY, 1, z.number()),
|
253
|
+
new PluginCoordinationType(CoordinationType.EMBEDDING_OBS_RADIUS_MODE, 'auto', z.enum(['manual', 'auto'])),
|
254
|
+
new PluginCoordinationType(CoordinationType.EMBEDDING_OBS_OPACITY_MODE, 'auto', z.enum(['manual', 'auto'])),
|
255
|
+
new PluginCoordinationType(CoordinationType.SPATIAL_ZOOM, null, z.number().nullable()),
|
256
|
+
new PluginCoordinationType(CoordinationType.SPATIAL_ROTATION, 0, z.number().nullable()),
|
257
|
+
new PluginCoordinationType(CoordinationType.SPATIAL_TARGET_X, null, z.number().nullable()),
|
258
|
+
new PluginCoordinationType(CoordinationType.SPATIAL_TARGET_Y, null, z.number().nullable()),
|
259
|
+
new PluginCoordinationType(CoordinationType.SPATIAL_TARGET_Z, null, z.number().nullable()),
|
260
|
+
new PluginCoordinationType(CoordinationType.SPATIAL_ROTATION_X, null, z.number().nullable()),
|
261
|
+
new PluginCoordinationType(CoordinationType.SPATIAL_ROTATION_Y, null, z.number().nullable()),
|
262
|
+
new PluginCoordinationType(CoordinationType.SPATIAL_ROTATION_Z, null, z.number().nullable()),
|
263
|
+
new PluginCoordinationType(CoordinationType.SPATIAL_ROTATION_ORBIT, 0, z.number().nullable()),
|
264
|
+
new PluginCoordinationType(CoordinationType.SPATIAL_ORBIT_AXIS, 'Y', z.string().nullable()),
|
265
|
+
new PluginCoordinationType(CoordinationType.SPATIAL_AXIS_FIXED, false, z.boolean().nullable()),
|
266
|
+
new PluginCoordinationType(CoordinationType.SPATIAL_IMAGE_LAYER, null, imageLayerObj.nullable()),
|
267
|
+
new PluginCoordinationType(
|
268
|
+
CoordinationType.SPATIAL_SEGMENTATION_LAYER,
|
269
|
+
null,
|
270
|
+
z.union([
|
271
|
+
cellsLayerObj, imageLayerObj,
|
272
|
+
]).nullable(),
|
273
|
+
),
|
274
|
+
new PluginCoordinationType(
|
275
|
+
CoordinationType.SPATIAL_NEIGHBORHOOD_LAYER,
|
276
|
+
null,
|
277
|
+
neighborhoodsLayerObj.nullable(),
|
278
|
+
),
|
279
|
+
new PluginCoordinationType(
|
280
|
+
CoordinationType.SPATIAL_POINT_LAYER,
|
281
|
+
null,
|
282
|
+
moleculesLayerObj.nullable(),
|
283
|
+
),
|
284
|
+
new PluginCoordinationType(CoordinationType.HEATMAP_ZOOM_X, 0, z.number()),
|
285
|
+
new PluginCoordinationType(CoordinationType.HEATMAP_ZOOM_Y, 0, z.number()),
|
286
|
+
new PluginCoordinationType(CoordinationType.HEATMAP_TARGET_X, 0, z.number()),
|
287
|
+
new PluginCoordinationType(CoordinationType.HEATMAP_TARGET_Y, 0, z.number()),
|
288
|
+
new PluginCoordinationType(CoordinationType.OBS_FILTER, null, z.array(z.string()).nullable()),
|
289
|
+
new PluginCoordinationType(CoordinationType.OBS_HIGHLIGHT, null, z.string().nullable()),
|
290
|
+
new PluginCoordinationType(
|
291
|
+
CoordinationType.OBS_SET_SELECTION,
|
292
|
+
null,
|
293
|
+
z.array(obsSetPath).nullable(),
|
294
|
+
),
|
295
|
+
new PluginCoordinationType(
|
296
|
+
CoordinationType.OBS_SET_EXPANSION,
|
297
|
+
null,
|
298
|
+
z.array(obsSetPath).nullable(),
|
299
|
+
),
|
300
|
+
new PluginCoordinationType(CoordinationType.OBS_SET_HIGHLIGHT, null, obsSetPath.nullable()),
|
301
|
+
new PluginCoordinationType(
|
302
|
+
CoordinationType.OBS_SET_COLOR,
|
303
|
+
null,
|
304
|
+
z.array(z.object({
|
305
|
+
path: obsSetPath,
|
306
|
+
color: rgbArray,
|
307
|
+
})).nullable(),
|
308
|
+
),
|
309
|
+
new PluginCoordinationType(
|
310
|
+
CoordinationType.OBS_COLOR_ENCODING,
|
311
|
+
'cellSetSelection',
|
312
|
+
z.enum(['geneSelection', 'cellSetSelection']),
|
313
|
+
),
|
314
|
+
new PluginCoordinationType(CoordinationType.FEATURE_FILTER, null, z.array(z.string()).nullable()),
|
315
|
+
new PluginCoordinationType(CoordinationType.FEATURE_HIGHLIGHT, null, z.string().nullable()),
|
316
|
+
new PluginCoordinationType(
|
317
|
+
CoordinationType.FEATURE_SELECTION,
|
318
|
+
null,
|
319
|
+
z.array(z.string()).nullable(),
|
320
|
+
),
|
321
|
+
new PluginCoordinationType(
|
322
|
+
CoordinationType.FEATURE_VALUE_TRANSFORM,
|
323
|
+
null,
|
324
|
+
z.enum(['log1p', 'arcsinh']).nullable(),
|
325
|
+
),
|
326
|
+
new PluginCoordinationType(
|
327
|
+
CoordinationType.FEATURE_VALUE_TRANSFORM_COEFFICIENT,
|
328
|
+
1,
|
329
|
+
z.number(),
|
330
|
+
),
|
331
|
+
new PluginCoordinationType(
|
332
|
+
CoordinationType.TOOLTIPS_VISIBLE,
|
333
|
+
true,
|
334
|
+
z.boolean(),
|
335
|
+
),
|
336
|
+
new PluginCoordinationType(
|
337
|
+
CoordinationType.FEATURE_VALUE_COLORMAP,
|
338
|
+
'plasma',
|
339
|
+
z.string().nullable(),
|
340
|
+
),
|
341
|
+
new PluginCoordinationType(
|
342
|
+
CoordinationType.FEATURE_VALUE_COLORMAP_RANGE,
|
343
|
+
[0.0, 1.0],
|
344
|
+
z.array(z.number()).length(2),
|
345
|
+
),
|
346
|
+
new PluginCoordinationType(
|
347
|
+
CoordinationType.GATING_FEATURE_SELECTION_X,
|
348
|
+
null,
|
349
|
+
z.string().nullable(),
|
350
|
+
),
|
351
|
+
new PluginCoordinationType(
|
352
|
+
CoordinationType.GATING_FEATURE_SELECTION_Y,
|
353
|
+
null,
|
354
|
+
z.string().nullable(),
|
355
|
+
),
|
356
|
+
new PluginCoordinationType(CoordinationType.GENOMIC_ZOOM_X, 0, z.number()),
|
357
|
+
new PluginCoordinationType(CoordinationType.GENOMIC_ZOOM_Y, 0, z.number()),
|
358
|
+
new PluginCoordinationType(CoordinationType.GENOMIC_TARGET_X, 1549999999.5, z.number()),
|
359
|
+
new PluginCoordinationType(CoordinationType.GENOMIC_TARGET_Y, 1549999999.5, z.number()),
|
360
|
+
new PluginCoordinationType(CoordinationType.ADDITIONAL_OBS_SETS, null, obsSetsSchema.nullable()),
|
361
|
+
new PluginCoordinationType(CoordinationType.MOLECULE_HIGHLIGHT, null, z.string().nullable()),
|
362
|
+
];
|