@vitessce/all 2.0.3-beta.0 → 2.0.3

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (16) hide show
  1. package/dist/deflate.8ace1ac4.mjs +13 -0
  2. package/dist/hglib.1f1ea875.mjs +130303 -0
  3. package/dist/index.7dac8670.mjs +244127 -0
  4. package/dist/index.mjs +11 -0
  5. package/dist/jpeg.c8011e3a.mjs +840 -0
  6. package/dist/lerc.ccda5eb2.mjs +1935 -0
  7. package/dist/lzw.39876143.mjs +128 -0
  8. package/dist/packbits.9e95d117.mjs +30 -0
  9. package/dist/pako.esm.4b234125.mjs +3940 -0
  10. package/dist/raw.0279d74b.mjs +12 -0
  11. package/dist/webimage.5ac7ce95.mjs +32 -0
  12. package/{dist → dist-tsc}/index.js +0 -0
  13. package/package.json +23 -21
  14. package/src/index.js +7 -0
  15. package/src/setup.js +143 -0
  16. package/dist/setup.js +0 -96
package/dist/raw.0279d74b.mjs ADDED
@@ -0,0 +1,12 @@
1
+ import { B as BaseDecoder } from "./index.7dac8670.mjs";
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+ import "react";
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+ import "@vitessce/vit-s";
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+ import "react-dom";
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+ class RawDecoder extends BaseDecoder {
6
+ decodeBlock(buffer) {
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+ return buffer;
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+ }
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+ }
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+ export {
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+ RawDecoder as default
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+ };
package/dist/webimage.5ac7ce95.mjs ADDED
@@ -0,0 +1,32 @@
1
+ import { B as BaseDecoder } from "./index.7dac8670.mjs";
2
+ import "react";
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+ import "@vitessce/vit-s";
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+ import "react-dom";
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+ class WebImageDecoder extends BaseDecoder {
6
+ constructor() {
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+ super();
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+ if (typeof createImageBitmap === "undefined") {
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+ throw new Error("Cannot decode WebImage as `createImageBitmap` is not available");
10
+ } else if (typeof document === "undefined" && typeof OffscreenCanvas === "undefined") {
11
+ throw new Error("Cannot decode WebImage as neither `document` nor `OffscreenCanvas` is not available");
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+ }
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+ }
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+ async decode(fileDirectory, buffer) {
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+ const blob = new Blob([buffer]);
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+ const imageBitmap = await createImageBitmap(blob);
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+ let canvas;
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+ if (typeof document !== "undefined") {
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+ canvas = document.createElement("canvas");
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+ canvas.width = imageBitmap.width;
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+ canvas.height = imageBitmap.height;
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+ } else {
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+ canvas = new OffscreenCanvas(imageBitmap.width, imageBitmap.height);
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+ }
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+ const ctx = canvas.getContext("2d");
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+ ctx.drawImage(imageBitmap, 0, 0);
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+ return ctx.getImageData(0, 0, imageBitmap.width, imageBitmap.height).data.buffer;
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+ }
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+ }
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+ export {
31
+ WebImageDecoder as default
32
+ };
package/{dist → dist-tsc}/index.js RENAMED
File without changes
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@vitessce/all",
3
- "version": "2.0.3-beta.0",
3
+ "version": "2.0.3",
4
4
  "author": "Gehlenborg Lab",
5
5
  "homepage": "http://vitessce.io",
6
6
  "repository": {
@@ -8,28 +8,29 @@
8
8
  "url": "git+https://github.com/vitessce/vitessce.git"
9
9
  },
10
10
  "license": "MIT",
11
- "main": "dist/index.js",
11
+ "main": "dist/index.mjs",
12
12
  "files": [
13
- "dist"
13
+ "dist",
14
+ "src"
14
15
  ],
15
16
  "dependencies": {
16
17
  "@material-ui/core": "~4.12.3",
17
- "@vitessce/constants-internal": "2.0.3-beta.0",
18
- "@vitessce/feature-list": "2.0.3-beta.0",
19
- "@vitessce/genomic-profiles": "2.0.3-beta.0",
20
- "@vitessce/heatmap": "2.0.3-beta.0",
21
- "@vitessce/csv": "2.0.3-beta.0",
22
- "@vitessce/layer-controller": "2.0.3-beta.0",
23
- "@vitessce/json": "2.0.3-beta.0",
24
- "@vitessce/description": "2.0.3-beta.0",
25
- "@vitessce/scatterplot-embedding": "2.0.3-beta.0",
26
- "@vitessce/scatterplot-gating": "2.0.3-beta.0",
27
- "@vitessce/obs-sets-manager": "2.0.3-beta.0",
28
- "@vitessce/statistical-plots": "2.0.3-beta.0",
29
- "@vitessce/status": "2.0.3-beta.0",
30
- "@vitessce/spatial": "2.0.3-beta.0",
31
- "@vitessce/zarr": "2.0.3-beta.0",
32
- "@vitessce/vit-s": "2.0.3-beta.0"
18
+ "@vitessce/constants-internal": "2.0.3",
19
+ "@vitessce/csv": "2.0.3",
20
+ "@vitessce/description": "2.0.3",
21
+ "@vitessce/feature-list": "2.0.3",
22
+ "@vitessce/genomic-profiles": "2.0.3",
23
+ "@vitessce/heatmap": "2.0.3",
24
+ "@vitessce/json": "2.0.3",
25
+ "@vitessce/layer-controller": "2.0.3",
26
+ "@vitessce/obs-sets-manager": "2.0.3",
27
+ "@vitessce/scatterplot-embedding": "2.0.3",
28
+ "@vitessce/scatterplot-gating": "2.0.3",
29
+ "@vitessce/spatial": "2.0.3",
30
+ "@vitessce/statistical-plots": "2.0.3",
31
+ "@vitessce/status": "2.0.3",
32
+ "@vitessce/vit-s": "2.0.3",
33
+ "@vitessce/zarr": "2.0.3"
33
34
  },
34
35
  "devDependencies": {
35
36
  "react": "^18.0.0"
@@ -38,7 +39,8 @@
38
39
  "react": "^16.8.0 || ^17.0.0 || ^18.0.0"
39
40
  },
40
41
  "scripts": {
41
- "start": "tsc --watch",
42
- "build": "tsc"
42
+ "start": "pnpm -C ../../../ run start-tsc",
43
+ "build": "pnpm -C ../../../ run build-tsc",
44
+ "bundle": "pnpm exec vite build -c ../../../scripts/vite.config.js"
43
45
  }
44
46
  }
package/src/index.js ADDED
@@ -0,0 +1,7 @@
1
+ export { Vitessce } from './setup';
2
+ export {
3
+ registerPluginFileType,
4
+ registerPluginViewType,
5
+ registerPluginCoordinationType,
6
+ registerPluginJointFileType,
7
+ } from '@vitessce/vit-s';
package/src/setup.js ADDED
@@ -0,0 +1,143 @@
1
+ /* eslint-disable max-len */
2
+ import { useState, useLayoutEffect } from 'react';
3
+ import { VitS, registerPluginFileType } from '@vitessce/vit-s';
4
+
5
+ // Register view type plugins
6
+ import { register as registerDescription } from '@vitessce/description';
7
+ import { register as registerObsSetsManager } from '@vitessce/obs-sets-manager';
8
+ import { register as registerScatterplotEmbedding } from '@vitessce/scatterplot-embedding';
9
+ import { register as registerScatterplotGating } from '@vitessce/scatterplot-gating';
10
+ import { register as registerSpatial } from '@vitessce/spatial';
11
+ import { register as registerHeatmap } from '@vitessce/heatmap';
12
+ import { register as registerFeatureList } from '@vitessce/feature-list';
13
+ import { register as registerLayerController } from '@vitessce/layer-controller';
14
+ import { register as registerStatus } from '@vitessce/status';
15
+ import { registerCellSetExpression, registerCellSetSizes, registerExpressionHistogram } from '@vitessce/statistical-plots';
16
+ import { registerHiglass, registerGenomicProfiles } from '@vitessce/genomic-profiles';
17
+
18
+ // Register file type plugins
19
+ import {
20
+ // CSV
21
+ CsvSource,
22
+ ObsSetsCsvLoader,
23
+ ObsEmbeddingCsvLoader,
24
+ ObsLocationsCsvLoader,
25
+ ObsLabelsCsvLoader,
26
+ ObsFeatureMatrixCsvLoader,
27
+ FeatureLabelsCsvLoader,
28
+ } from '@vitessce/csv';
29
+ import {
30
+ // JSON
31
+ JsonSource,
32
+ JsonLoader,
33
+ ObsSegmentationsJsonLoader,
34
+ ObsSetsJsonLoader,
35
+ // Legacy
36
+ RasterJsonAsImageLoader,
37
+ RasterJsonAsObsSegmentationsLoader,
38
+ ClustersJsonAsObsFeatureMatrixLoader,
39
+ GenesJsonAsObsFeatureMatrixLoader,
40
+ CellsJsonAsObsLabelsLoader,
41
+ CellsJsonAsObsEmbeddingLoader,
42
+ CellsJsonAsObsLocationsLoader,
43
+ CellsJsonAsObsSegmentationsLoader,
44
+ MoleculesJsonAsObsLocationsLoader,
45
+ MoleculesJsonAsObsLabelsLoader,
46
+ } from '@vitessce/json';
47
+ import {
48
+ // AnnData
49
+ AnnDataSource,
50
+ ObsFeatureMatrixAnndataLoader,
51
+ ObsEmbeddingAnndataLoader,
52
+ ObsLocationsAnndataLoader,
53
+ ObsSegmentationsAnndataLoader,
54
+ ObsSetsAnndataLoader,
55
+ ObsLabelsAnndataLoader,
56
+ FeatureLabelsAnndataLoader,
57
+ // MuData
58
+ MuDataSource,
59
+ // OME
60
+ OmeZarrLoader,
61
+ // Legacy
62
+ ZarrDataSource,
63
+ MatrixZarrAsObsFeatureMatrixLoader,
64
+ GenomicProfilesZarrLoader,
65
+ } from '@vitessce/zarr';
66
+ import { FileType, DataType } from '@vitessce/constants-internal';
67
+
68
+ function setup() {
69
+ // View types
70
+ registerDescription();
71
+ registerObsSetsManager();
72
+ registerScatterplotEmbedding();
73
+ registerScatterplotGating();
74
+ registerSpatial();
75
+ registerHeatmap();
76
+ registerFeatureList();
77
+ registerLayerController();
78
+ registerStatus();
79
+ // Statistical plots
80
+ registerCellSetExpression();
81
+ registerCellSetSizes();
82
+ registerExpressionHistogram();
83
+ // Higlass
84
+ registerHiglass();
85
+ registerGenomicProfiles();
86
+
87
+ // File types
88
+ // All CSV file types
89
+ registerPluginFileType(FileType.OBS_SETS_CSV, DataType.OBS_SETS, ObsSetsCsvLoader, CsvSource);
90
+ registerPluginFileType(FileType.OBS_EMBEDDING_CSV, DataType.OBS_EMBEDDING, ObsEmbeddingCsvLoader, CsvSource);
91
+ registerPluginFileType(FileType.OBS_LOCATIONS_CSV, DataType.OBS_LOCATIONS, ObsLocationsCsvLoader, CsvSource);
92
+ registerPluginFileType(FileType.OBS_LABELS_CSV, DataType.OBS_LABELS, ObsLabelsCsvLoader, CsvSource);
93
+ registerPluginFileType(FileType.OBS_FEATURE_MATRIX_CSV, DataType.OBS_FEATURE_MATRIX, ObsFeatureMatrixCsvLoader, CsvSource);
94
+ registerPluginFileType(FileType.FEATURE_LABELS_CSV, DataType.FEATURE_LABELS, FeatureLabelsCsvLoader, CsvSource);
95
+ // All JSON file types
96
+ registerPluginFileType(FileType.OBS_SEGMENTATIONS_JSON, DataType.OBS_SEGMENTATIONS, ObsSegmentationsJsonLoader, JsonSource);
97
+ registerPluginFileType(FileType.OBS_SETS_JSON, DataType.OBS_SETS, ObsSetsJsonLoader, JsonSource);
98
+ // All AnnData file types
99
+ registerPluginFileType(FileType.OBS_SETS_ANNDATA_ZARR, DataType.OBS_SETS, ObsSetsAnndataLoader, AnnDataSource);
100
+ registerPluginFileType(FileType.OBS_EMBEDDING_ANNDATA_ZARR, DataType.OBS_EMBEDDING, ObsEmbeddingAnndataLoader, AnnDataSource);
101
+ registerPluginFileType(FileType.OBS_LOCATIONS_ANNDATA_ZARR, DataType.OBS_LOCATIONS, ObsLocationsAnndataLoader, AnnDataSource);
102
+ registerPluginFileType(FileType.OBS_LABELS_ANNDATA_ZARR, DataType.OBS_LABELS, ObsLabelsAnndataLoader, AnnDataSource);
103
+ registerPluginFileType(FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR, DataType.OBS_FEATURE_MATRIX, ObsFeatureMatrixAnndataLoader, AnnDataSource);
104
+ registerPluginFileType(FileType.OBS_SEGMENTATIONS_ANNDATA_ZARR, DataType.OBS_SEGMENTATIONS, ObsSegmentationsAnndataLoader, AnnDataSource);
105
+ registerPluginFileType(FileType.FEATURE_LABELS_ANNDATA_ZARR, DataType.FEATURE_LABELS, FeatureLabelsAnndataLoader, AnnDataSource);
106
+ // All MuData file types
107
+ registerPluginFileType(FileType.OBS_SETS_MUDATA_ZARR, DataType.OBS_SETS, ObsSetsAnndataLoader, MuDataSource);
108
+ registerPluginFileType(FileType.OBS_EMBEDDING_MUDATA_ZARR, DataType.OBS_EMBEDDING, ObsEmbeddingAnndataLoader, MuDataSource);
109
+ registerPluginFileType(FileType.OBS_LOCATIONS_MUDATA_ZARR, DataType.OBS_LOCATIONS, ObsLocationsAnndataLoader, MuDataSource);
110
+ registerPluginFileType(FileType.OBS_LABELS_MUDATA_ZARR, DataType.OBS_LABELS, ObsLabelsAnndataLoader, MuDataSource);
111
+ registerPluginFileType(FileType.OBS_FEATURE_MATRIX_MUDATA_ZARR, DataType.OBS_FEATURE_MATRIX, ObsFeatureMatrixAnndataLoader, MuDataSource);
112
+ registerPluginFileType(FileType.OBS_SEGMENTATIONS_MUDATA_ZARR, DataType.OBS_SEGMENTATIONS, ObsSegmentationsAnndataLoader, MuDataSource);
113
+ registerPluginFileType(FileType.FEATURE_LABELS_MUDATA_ZARR, DataType.FEATURE_LABELS, FeatureLabelsAnndataLoader, MuDataSource);
114
+ // All OME file types
115
+ registerPluginFileType(FileType.IMAGE_OME_ZARR, DataType.IMAGE, OmeZarrLoader, ZarrDataSource);
116
+
117
+ // All legacy file types
118
+ registerPluginFileType(FileType.OBS_FEATURE_MATRIX_EXPRESSION_MATRIX_ZARR, DataType.OBS_FEATURE_MATRIX, MatrixZarrAsObsFeatureMatrixLoader, ZarrDataSource);
119
+ registerPluginFileType(FileType.IMAGE_RASTER_JSON, DataType.IMAGE, RasterJsonAsImageLoader, JsonSource);
120
+ registerPluginFileType(FileType.OBS_SEGMENTATIONS_RASTER_JSON, DataType.OBS_SEGMENTATIONS, RasterJsonAsObsSegmentationsLoader, JsonSource);
121
+ registerPluginFileType(FileType.OBS_SETS_CELL_SETS_JSON, DataType.OBS_SETS, ObsSetsJsonLoader, JsonSource);
122
+ registerPluginFileType(FileType.OBS_FEATURE_MATRIX_CLUSTERS_JSON, DataType.OBS_FEATURE_MATRIX, ClustersJsonAsObsFeatureMatrixLoader, JsonSource);
123
+ registerPluginFileType(FileType.OBS_FEATURE_MATRIX_GENES_JSON, DataType.OBS_FEATURE_MATRIX, GenesJsonAsObsFeatureMatrixLoader, JsonSource);
124
+ registerPluginFileType(FileType.OBS_LABELS_CELLS_JSON, DataType.OBS_LABELS, CellsJsonAsObsLabelsLoader, JsonSource);
125
+ registerPluginFileType(FileType.OBS_EMBEDDING_CELLS_JSON, DataType.OBS_EMBEDDING, CellsJsonAsObsEmbeddingLoader, JsonSource);
126
+ registerPluginFileType(FileType.OBS_LOCATIONS_CELLS_JSON, DataType.OBS_LOCATIONS, CellsJsonAsObsLocationsLoader, JsonSource);
127
+ registerPluginFileType(FileType.OBS_SEGMENTATIONS_CELLS_JSON, DataType.OBS_SEGMENTATIONS, CellsJsonAsObsSegmentationsLoader, JsonSource);
128
+ registerPluginFileType(FileType.OBS_LOCATIONS_MOLECULES_JSON, DataType.OBS_LOCATIONS, MoleculesJsonAsObsLocationsLoader, JsonSource);
129
+ registerPluginFileType(FileType.OBS_LABELS_MOLECULES_JSON, DataType.OBS_LABELS, MoleculesJsonAsObsLabelsLoader, JsonSource);
130
+ registerPluginFileType(FileType.NEIGHBORHOODS_JSON, DataType.NEIGHBORHOODS, JsonLoader, JsonSource);
131
+ registerPluginFileType(FileType.GENOMIC_PROFILES_ZARR, DataType.GENOMIC_PROFILES, GenomicProfilesZarrLoader, ZarrDataSource);
132
+ }
133
+
134
+ export function Vitessce(props) {
135
+ const [ready, setReady] = useState(false);
136
+ useLayoutEffect(() => {
137
+ setup();
138
+ setReady(true);
139
+ }, []);
140
+ return (ready ? (
141
+ <VitS {...props} />
142
+ ) : null);
143
+ }
package/dist/setup.js DELETED
@@ -1,96 +0,0 @@
1
- import { jsx as _jsx } from "react/jsx-runtime";
2
- /* eslint-disable max-len */
3
- import { useState, useLayoutEffect } from 'react';
4
- import { VitS, registerPluginFileType } from '@vitessce/vit-s';
5
- // Register view type plugins
6
- import { register as registerDescription } from '@vitessce/description';
7
- import { register as registerObsSetsManager } from '@vitessce/obs-sets-manager';
8
- import { register as registerScatterplotEmbedding } from '@vitessce/scatterplot-embedding';
9
- import { register as registerScatterplotGating } from '@vitessce/scatterplot-gating';
10
- import { register as registerSpatial } from '@vitessce/spatial';
11
- import { register as registerHeatmap } from '@vitessce/heatmap';
12
- import { register as registerFeatureList } from '@vitessce/feature-list';
13
- import { register as registerLayerController } from '@vitessce/layer-controller';
14
- import { register as registerStatus } from '@vitessce/status';
15
- import { registerCellSetExpression, registerCellSetSizes, registerExpressionHistogram } from '@vitessce/statistical-plots';
16
- import { registerHiglass, registerGenomicProfiles } from '@vitessce/genomic-profiles';
17
- // Register file type plugins
18
- import {
19
- // CSV
20
- CsvSource, ObsSetsCsvLoader, ObsEmbeddingCsvLoader, ObsLocationsCsvLoader, ObsLabelsCsvLoader, ObsFeatureMatrixCsvLoader, FeatureLabelsCsvLoader, } from '@vitessce/csv';
21
- import {
22
- // JSON
23
- JsonSource, JsonLoader, ObsSegmentationsJsonLoader, ObsSetsJsonLoader,
24
- // Legacy
25
- RasterJsonAsImageLoader, RasterJsonAsObsSegmentationsLoader, ClustersJsonAsObsFeatureMatrixLoader, GenesJsonAsObsFeatureMatrixLoader, CellsJsonAsObsLabelsLoader, CellsJsonAsObsEmbeddingLoader, CellsJsonAsObsLocationsLoader, CellsJsonAsObsSegmentationsLoader, MoleculesJsonAsObsLocationsLoader, MoleculesJsonAsObsLabelsLoader, } from '@vitessce/json';
26
- import {
27
- // AnnData
28
- AnnDataSource, ObsFeatureMatrixAnndataLoader, ObsEmbeddingAnndataLoader, ObsLocationsAnndataLoader, ObsSegmentationsAnndataLoader, ObsSetsAnndataLoader, ObsLabelsAnndataLoader, FeatureLabelsAnndataLoader,
29
- // OME
30
- OmeZarrLoader,
31
- // Legacy
32
- ZarrDataSource, MatrixZarrAsObsFeatureMatrixLoader, GenomicProfilesZarrLoader, } from '@vitessce/zarr';
33
- import { FileType, DataType } from '@vitessce/constants-internal';
34
- function setup() {
35
- // View types
36
- registerDescription();
37
- registerObsSetsManager();
38
- registerScatterplotEmbedding();
39
- registerScatterplotGating();
40
- registerSpatial();
41
- registerHeatmap();
42
- registerFeatureList();
43
- registerLayerController();
44
- registerStatus();
45
- // Statistical plots
46
- registerCellSetExpression();
47
- registerCellSetSizes();
48
- registerExpressionHistogram();
49
- // Higlass
50
- registerHiglass();
51
- registerGenomicProfiles();
52
- // File types
53
- // All CSV file types
54
- registerPluginFileType(FileType.OBS_SETS_CSV, DataType.OBS_SETS, ObsSetsCsvLoader, CsvSource);
55
- registerPluginFileType(FileType.OBS_EMBEDDING_CSV, DataType.OBS_EMBEDDING, ObsEmbeddingCsvLoader, CsvSource);
56
- registerPluginFileType(FileType.OBS_LOCATIONS_CSV, DataType.OBS_LOCATIONS, ObsLocationsCsvLoader, CsvSource);
57
- registerPluginFileType(FileType.OBS_LABELS_CSV, DataType.OBS_LABELS, ObsLabelsCsvLoader, CsvSource);
58
- registerPluginFileType(FileType.OBS_FEATURE_MATRIX_CSV, DataType.OBS_FEATURE_MATRIX, ObsFeatureMatrixCsvLoader, CsvSource);
59
- registerPluginFileType(FileType.FEATURE_LABELS_CSV, DataType.FEATURE_LABELS, FeatureLabelsCsvLoader, CsvSource);
60
- // All JSON file types
61
- registerPluginFileType(FileType.OBS_SEGMENTATIONS_JSON, DataType.OBS_SEGMENTATIONS, ObsSegmentationsJsonLoader, JsonSource);
62
- registerPluginFileType(FileType.OBS_SETS_JSON, DataType.OBS_SETS, ObsSetsJsonLoader, JsonSource);
63
- // All AnnData file types
64
- registerPluginFileType(FileType.OBS_SETS_ANNDATA_ZARR, DataType.OBS_SETS, ObsSetsAnndataLoader, AnnDataSource);
65
- registerPluginFileType(FileType.OBS_EMBEDDING_ANNDATA_ZARR, DataType.OBS_EMBEDDING, ObsEmbeddingAnndataLoader, AnnDataSource);
66
- registerPluginFileType(FileType.OBS_LOCATIONS_ANNDATA_ZARR, DataType.OBS_LOCATIONS, ObsLocationsAnndataLoader, AnnDataSource);
67
- registerPluginFileType(FileType.OBS_LABELS_ANNDATA_ZARR, DataType.OBS_LABELS, ObsLabelsAnndataLoader, AnnDataSource);
68
- registerPluginFileType(FileType.OBS_FEATURE_MATRIX_ANNDATA_ZARR, DataType.OBS_FEATURE_MATRIX, ObsFeatureMatrixAnndataLoader, AnnDataSource);
69
- registerPluginFileType(FileType.OBS_SEGMENTATIONS_ANNDATA_ZARR, DataType.OBS_SEGMENTATIONS, ObsSegmentationsAnndataLoader, AnnDataSource);
70
- registerPluginFileType(FileType.FEATURE_LABELS_ANNDATA_ZARR, DataType.FEATURE_LABELS, FeatureLabelsAnndataLoader, AnnDataSource);
71
- // All OME file types
72
- registerPluginFileType(FileType.IMAGE_OME_ZARR, DataType.IMAGE, OmeZarrLoader, ZarrDataSource);
73
- // All legacy file types
74
- registerPluginFileType(FileType.OBS_FEATURE_MATRIX_EXPRESSION_MATRIX_ZARR, DataType.OBS_FEATURE_MATRIX, MatrixZarrAsObsFeatureMatrixLoader, ZarrDataSource);
75
- registerPluginFileType(FileType.IMAGE_RASTER_JSON, DataType.IMAGE, RasterJsonAsImageLoader, JsonSource);
76
- registerPluginFileType(FileType.OBS_SEGMENTATIONS_RASTER_JSON, DataType.OBS_SEGMENTATIONS, RasterJsonAsObsSegmentationsLoader, JsonSource);
77
- registerPluginFileType(FileType.OBS_SETS_CELL_SETS_JSON, DataType.OBS_SETS, ObsSetsJsonLoader, JsonSource);
78
- registerPluginFileType(FileType.OBS_FEATURE_MATRIX_CLUSTERS_JSON, DataType.OBS_FEATURE_MATRIX, ClustersJsonAsObsFeatureMatrixLoader, JsonSource);
79
- registerPluginFileType(FileType.OBS_FEATURE_MATRIX_GENES_JSON, DataType.OBS_FEATURE_MATRIX, GenesJsonAsObsFeatureMatrixLoader, JsonSource);
80
- registerPluginFileType(FileType.OBS_LABELS_CELLS_JSON, DataType.OBS_LABELS, CellsJsonAsObsLabelsLoader, JsonSource);
81
- registerPluginFileType(FileType.OBS_EMBEDDING_CELLS_JSON, DataType.OBS_EMBEDDING, CellsJsonAsObsEmbeddingLoader, JsonSource);
82
- registerPluginFileType(FileType.OBS_LOCATIONS_CELLS_JSON, DataType.OBS_LOCATIONS, CellsJsonAsObsLocationsLoader, JsonSource);
83
- registerPluginFileType(FileType.OBS_SEGMENTATIONS_CELLS_JSON, DataType.OBS_SEGMENTATIONS, CellsJsonAsObsSegmentationsLoader, JsonSource);
84
- registerPluginFileType(FileType.OBS_LOCATIONS_MOLECULES_JSON, DataType.OBS_LOCATIONS, MoleculesJsonAsObsLocationsLoader, JsonSource);
85
- registerPluginFileType(FileType.OBS_LABELS_MOLECULES_JSON, DataType.OBS_LABELS, MoleculesJsonAsObsLabelsLoader, JsonSource);
86
- registerPluginFileType(FileType.NEIGHBORHOODS_JSON, DataType.NEIGHBORHOODS, JsonLoader, JsonSource);
87
- registerPluginFileType(FileType.GENOMIC_PROFILES_ZARR, DataType.GENOMIC_PROFILES, GenomicProfilesZarrLoader, ZarrDataSource);
88
- }
89
- export function Vitessce(props) {
90
- const [ready, setReady] = useState(false);
91
- useLayoutEffect(() => {
92
- setup();
93
- setReady(true);
94
- }, []);
95
- return (ready ? (_jsx(VitS, { ...props })) : null);
96
- }