@vionwilliams/agent-os 1.0.0-alpha.26 → 1.0.0-alpha.28

package/dist/cli.js

@@ -3297,8 +3297,18 @@ var init_debugFilter = __esm(() => {
 // src/utils/envUtils.ts
 import { homedir } from "os";
 import { join } from "path";
+function applyAgentOSEnvAliases() {
+  for (const [agentOSKey, legacyKey] of Object.entries(AGENT_OS_ENV_ALIASES)) {
+    if (process.env[agentOSKey] !== undefined) {
+      process.env[legacyKey] = process.env[agentOSKey];
+    }
+  }
+}
+function getEnvWithLegacyFallback(agentOSKey, legacyKey) {
+  return process.env[agentOSKey] ?? process.env[legacyKey];
+}
 function getTeamsDir() {
-  return join(getClaudeConfigHomeDir(), "teams");
+  return join(getAgentOSConfigHomeDir(), "teams");
 }
 function hasNodeOption(flag) {
   const nodeOptions = process.env.NODE_OPTIONS;
@@ -3326,7 +3336,7 @@ function isEnvDefinedFalsy(envVar) {
   return ["0", "false", "no", "off"].includes(normalizedValue);
 }
 function isBareMode() {
-  return isEnvTruthy(process.env.CLAUDE_CODE_SIMPLE) || process.argv.includes("--bare");
+  return isEnvTruthy(getEnvWithLegacyFallback("AGENT_OS_SIMPLE", "CLAUDE_CODE_SIMPLE")) || process.argv.includes("--bare");
 }
 function parseEnvVars(rawEnvArgs) {
   const parsedEnv = {};
@@ -3348,7 +3358,7 @@ function getDefaultVertexRegion() {
   return process.env.CLOUD_ML_REGION || "us-east5";
 }
 function shouldMaintainProjectWorkingDir() {
-  return isEnvTruthy(process.env.CLAUDE_BASH_MAINTAIN_PROJECT_WORKING_DIR);
+  return isEnvTruthy(getEnvWithLegacyFallback("AGENT_OS_BASH_MAINTAIN_PROJECT_WORKING_DIR", "CLAUDE_BASH_MAINTAIN_PROJECT_WORKING_DIR"));
 }
 function isRunningOnHomespace() {
   return process.env.USER_TYPE === "ant" && isEnvTruthy(process.env.COO_RUNNING_ON_HOMESPACE);
@@ -3362,12 +3372,26 @@ function getVertexRegionForModel(model) {
   }
   return getDefaultVertexRegion();
 }
-var getClaudeConfigHomeDir, VERTEX_REGION_OVERRIDES;
+var AGENT_OS_ENV_ALIASES, getAgentOSConfigHomeDir, getClaudeConfigHomeDir, VERTEX_REGION_OVERRIDES;
 var init_envUtils = __esm(() => {
   init_memoize();
-  getClaudeConfigHomeDir = memoize_default(() => {
+  AGENT_OS_ENV_ALIASES = {
+    AGENT_OS_USE_BEDROCK: "CLAUDE_CODE_USE_BEDROCK",
+    AGENT_OS_SKIP_BEDROCK_AUTH: "CLAUDE_CODE_SKIP_BEDROCK_AUTH",
+    AGENT_OS_USE_VERTEX: "CLAUDE_CODE_USE_VERTEX",
+    AGENT_OS_SKIP_VERTEX_AUTH: "CLAUDE_CODE_SKIP_VERTEX_AUTH",
+    AGENT_OS_USE_FOUNDRY: "CLAUDE_CODE_USE_FOUNDRY",
+    AGENT_OS_SKIP_FOUNDRY_AUTH: "CLAUDE_CODE_SKIP_FOUNDRY_AUTH",
+    AGENT_OS_SIMPLE: "CLAUDE_CODE_SIMPLE",
+    AGENT_OS_MAX_OUTPUT_TOKENS: "CLAUDE_CODE_MAX_OUTPUT_TOKENS",
+    AGENT_OS_EFFORT_LEVEL: "CLAUDE_CODE_EFFORT_LEVEL",
+    AGENT_OS_BASH_MAINTAIN_PROJECT_WORKING_DIR: "CLAUDE_BASH_MAINTAIN_PROJECT_WORKING_DIR"
+  };
+  applyAgentOSEnvAliases();
+  getAgentOSConfigHomeDir = memoize_default(() => {
     return (process.env.AGENT_OS_CONFIG_DIR ?? process.env.CLAUDE_CONFIG_DIR ?? join(homedir(), ".agent-os")).normalize("NFC");
   }, () => `${process.env.AGENT_OS_CONFIG_DIR ?? ""}::${process.env.CLAUDE_CONFIG_DIR ?? ""}`);
+  getClaudeConfigHomeDir = getAgentOSConfigHomeDir;
   VERTEX_REGION_OVERRIDES = [
     ["claude-haiku-4-5", "VERTEX_REGION_CLAUDE_HAIKU_4_5"],
     ["claude-3-5-haiku", "VERTEX_REGION_CLAUDE_3_5_HAIKU"],
@@ -93314,7 +93338,7 @@ var init_system = __esm(() => {
     AGENT_SDK_CLAUDE_CODE_PRESET_PREFIX,
     AGENT_SDK_PREFIX
   ];
-  AGENT_OS_VERSION = typeof MACRO !== "undefined" ? "1.0.0-alpha.26" : "dev";
+  AGENT_OS_VERSION = typeof MACRO !== "undefined" ? "1.0.0-alpha.28" : "dev";
   CLI_SYSPROMPT_PREFIXES = new Set(CLI_SYSPROMPT_PREFIX_VALUES);
 });
 
@@ -93758,7 +93782,7 @@ function getClaudeCodeUserAgent() {
 }
 var AGENT_OS_VERSION2;
 var init_userAgent = __esm(() => {
-  AGENT_OS_VERSION2 = typeof MACRO !== "undefined" ? "1.0.0-alpha.26" : "dev";
+  AGENT_OS_VERSION2 = typeof MACRO !== "undefined" ? "1.0.0-alpha.28" : "dev";
 });
 
 // src/utils/http.ts
@@ -93839,7 +93863,7 @@ var init_http2 = __esm(() => {
   init_auth();
   init_userAgent();
   init_workloadContext();
-  AGENT_OS_VERSION3 = typeof MACRO !== "undefined" ? "1.0.0-alpha.26" : "dev";
+  AGENT_OS_VERSION3 = typeof MACRO !== "undefined" ? "1.0.0-alpha.28" : "dev";
 });
 
 // src/services/api/router/userProviders.ts
@@ -207177,7 +207201,7 @@ var init_sessionStorage = __esm(() => {
   init_settings2();
   init_slowOperations();
   init_uuid();
-  VERSION4 = typeof MACRO !== "undefined" ? "1.0.0-alpha.26" : "unknown";
+  VERSION4 = typeof MACRO !== "undefined" ? "1.0.0-alpha.28" : "unknown";
   MAX_TOMBSTONE_REWRITE_BYTES = 50 * 1024 * 1024;
   SKIP_FIRST_PROMPT_PATTERN = /^(?:\s*<[a-z][\w-]*[\s>]|\[Request interrupted by user[^\]]*\])/;
   EPHEMERAL_PROGRESS_TYPES = new Set([
@@ -207307,7 +207331,7 @@ function Feedback({
       platform: env3.platform,
       gitRepo: envInfo.isGit,
       terminal: env3.terminal,
-      version: "1.0.0-alpha.26",
+      version: "1.0.0-alpha.28",
       transcript: normalizeMessagesForAPI(messages),
       errors: sanitizedErrors,
       lastApiRequest: getLastAPIRequest(),
@@ -207491,7 +207515,7 @@ function Feedback({
                       ", ",
                       env3.terminal,
                       ", v",
-                      "1.0.0-alpha.26"
+                      "1.0.0-alpha.28"
                     ]
                   })
                 ]
@@ -207597,7 +207621,7 @@ ${sanitizedDescription}
 ` + `**Environment Info**
 ` + `- Platform: ${env3.platform}
 ` + `- Terminal: ${env3.terminal}
-` + `- Version: ${"1.0.0-alpha.26"}
+` + `- Version: ${"1.0.0-alpha.28"}
 ` + `- Feedback ID: ${feedbackId}
 ` + `
 **Errors**
@@ -259439,7 +259463,7 @@ var init_loadAgentsDir = __esm(() => {
   }));
   AgentsJsonSchema = lazySchema(() => exports_external.record(exports_external.string(), AgentJsonSchema()));
   getAgentDefinitionsWithOverrides = memoize_default(async (cwd2) => {
-    if (isEnvTruthy(process.env.CLAUDE_CODE_SIMPLE)) {
+    if (isBareMode()) {
       const builtInAgents = getBuiltInAgents();
       return {
         activeAgents: builtInAgents,
@@ -259982,8 +260006,8 @@ var init_toolAnalytics = __esm(() => {
   init_agentContext();
   init_slowOperations();
   init_teammate();
-  AGENT_OS_VERSION4 = typeof MACRO !== "undefined" ? "1.0.0-alpha.26" : "dev";
-  AGENT_OS_BUILD_TIME = typeof MACRO !== "undefined" ? "2026-05-22T09:53:25Z" : undefined;
+  AGENT_OS_VERSION4 = typeof MACRO !== "undefined" ? "1.0.0-alpha.28" : "dev";
+  AGENT_OS_BUILD_TIME = typeof MACRO !== "undefined" ? "2026-05-25T15:42:31Z" : undefined;
   BUILTIN_MCP_SERVER_NAMES = new Set([]);
   TOOL_INPUT_MAX_JSON_CHARS = 4 * 1024;
   FILE_COMMANDS = new Set([
@@ -270169,14 +270193,8 @@ function getProjectSkillsPath() {
 function getProjectSkillsPathForRoot(root2) {
   return join64(root2, ".agent-os", "skills");
 }
-function getLegacyProjectSkillsPathForRoot(root2) {
-  return join64(root2, ".claude", "skills");
-}
 function getAdditionalSkillsPaths(root2) {
-  return [
-    getProjectSkillsPathForRoot(root2),
-    getLegacyProjectSkillsPathForRoot(root2)
-  ];
+  return [getProjectSkillsPathForRoot(root2)];
 }
 function getContainingProjectSkillsRoot(filePath, cwd2) {
   const relativePath = relative8(cwd2, filePath);
@@ -270188,7 +270206,7 @@ function getContainingProjectSkillsRoot(filePath, cwd2) {
     const configDir = parts[i4];
     const skillsDir = parts[i4 + 1];
     const skillName = parts[i4 + 2];
-    if ((configDir === ".agent-os" || configDir === ".claude") && skillsDir === "skills" && skillName) {
+    if (configDir === ".agent-os" && skillsDir === "skills" && skillName) {
       return join64(cwd2, ...parts.slice(0, i4 + 2));
     }
   }
@@ -270197,11 +270215,11 @@ function getContainingProjectSkillsRoot(filePath, cwd2) {
 function getSkillsPath(source, dir) {
   switch (source) {
     case "policySettings":
-      return join64(getManagedFilePath(), ".claude", dir);
+      return join64(getManagedFilePath(), dir);
     case "userSettings":
-      return join64(getClaudeConfigHomeDir(), dir);
+      return join64(getAgentOSConfigHomeDir(), dir);
     case "projectSettings":
-      return dir === "skills" ? getProjectSkillsPath() : `.claude/${dir}`;
+      return dir === "skills" ? getProjectSkillsPath() : join64(".agent-os", dir);
     case "plugin":
       return "plugin";
     default:
@@ -270530,10 +270548,7 @@ async function discoverSkillDirsForPaths(filePaths, cwd2) {
     }
     let currentDir = dirname27(filePath);
     while (currentDir.startsWith(resolvedCwd + pathSep)) {
-      const skillDirs = [
-        getProjectSkillsPathForRoot(currentDir),
-        getLegacyProjectSkillsPathForRoot(currentDir)
-      ];
+      const skillDirs = [getProjectSkillsPathForRoot(currentDir)];
       for (const skillDir of skillDirs) {
         if (dynamicSkillDirs.has(skillDir)) {
           continue;
@@ -270643,8 +270658,8 @@ var init_loadSkillsDir = __esm(() => {
   init_types3();
   import_ignore3 = __toESM(require_ignore(), 1);
   getSkillDirCommands = memoize_default(async (cwd2) => {
-    const userSkillsDir = join64(getClaudeConfigHomeDir(), "skills");
-    const managedSkillsDir = join64(getManagedFilePath(), ".claude", "skills");
+    const userSkillsDir = join64(getAgentOSConfigHomeDir(), "skills");
+    const managedSkillsDir = getSkillsPath("policySettings", "skills");
     const projectSkillsDirs = getProjectDirsUpToHome("skills", cwd2);
     logForDebugging(`Loading skills from: managed=${managedSkillsDir}, user=${userSkillsDir}, project=[${projectSkillsDirs.join(", ")}]`);
     const additionalDirs = getAdditionalDirectoriesForClaudeMd();
@@ -270663,7 +270678,7 @@ var init_loadSkillsDir = __esm(() => {
       userSkills,
       projectSkillsNested,
       additionalSkillsNested,
-      legacyCommands
+      commandSkills
     ] = await Promise.all([
       isEnvTruthy(process.env.CLAUDE_CODE_DISABLE_POLICY_SKILLS) ? Promise.resolve([]) : loadSkillsFromSkillsDir(managedSkillsDir, "policySettings"),
       isSettingSourceEnabled("userSettings") && !skillsLocked ? loadSkillsFromSkillsDir(userSkillsDir, "userSettings") : Promise.resolve([]),
@@ -270676,7 +270691,7 @@ var init_loadSkillsDir = __esm(() => {
       ...userSkills,
       ...projectSkillsNested.flat(),
       ...additionalSkillsNested.flat(),
-      ...legacyCommands
+      ...commandSkills
     ];
     const fileIds = await Promise.all(allSkillsWithPaths.map(({ skill, filePath }) => skill.type === "prompt" ? getFileIdentity(filePath) : Promise.resolve(null)));
     const seenFileIds = new Map;
@@ -270718,7 +270733,7 @@ var init_loadSkillsDir = __esm(() => {
     if (newConditionalSkills.length > 0) {
       logForDebugging(`[skills] ${newConditionalSkills.length} conditional skills stored (activated when matching files are touched)`);
     }
-    logForDebugging(`Loaded ${deduplicatedSkills.length} unique skills (${unconditionalSkills.length} unconditional, ${newConditionalSkills.length} conditional, managed: ${managedSkills.length}, user: ${userSkills.length}, project: ${projectSkillsNested.flat().length}, additional: ${additionalSkillsNested.flat().length}, legacy commands: ${legacyCommands.length})`);
+    logForDebugging(`Loaded ${deduplicatedSkills.length} unique skills (${unconditionalSkills.length} unconditional, ${newConditionalSkills.length} conditional, managed: ${managedSkills.length}, user: ${userSkills.length}, project: ${projectSkillsNested.flat().length}, additional: ${additionalSkillsNested.flat().length}, commands: ${commandSkills.length})`);
     return unconditionalSkills;
   });
   dynamicSkillDirs = new Set;
@@ -274630,7 +274645,7 @@ function getInstallationEnv() {
   return;
 }
 function getClaudeCodeVersion() {
-  return "1.0.0-alpha.26";
+  return "1.0.0-alpha.28";
 }
 async function getInstalledVSCodeExtensionVersion(command) {
   const { stdout } = await execFileNoThrow(command, ["--list-extensions", "--show-versions"], {
@@ -297348,7 +297363,7 @@ async function setupSdkMcpClients(sdkMcpConfigs, sendMcpMessage) {
     const client = new Client({
       name: "claude-code",
       title: "Agent-OS",
-      version: "1.0.0-alpha.26",
+      version: "1.0.0-alpha.28",
       description: "Anthropic's agentic coding tool",
       websiteUrl: PRODUCT_URL
     }, {
@@ -297701,7 +297716,7 @@ var init_client4 = __esm(() => {
       const client = new Client({
         name: "claude-code",
         title: "Agent-OS",
-        version: "1.0.0-alpha.26",
+        version: "1.0.0-alpha.28",
         description: "Anthropic's agentic coding tool",
         websiteUrl: PRODUCT_URL
       }, {
@@ -385153,7 +385168,7 @@ function resolveProjectRoot(cwd2) {
   return findGitRoot(base2) ?? base2;
 }
 function projectAgentsDir(cwd2) {
-  return path18.join(resolveProjectRoot(cwd2), ".claude", "agents");
+  return path18.join(resolveProjectRoot(cwd2), ".agent-os", "agents");
 }
 function projectAgentPath(agentType, cwd2) {
   return path18.join(projectAgentsDir(cwd2), `${agentType}.md`);
@@ -385310,7 +385325,7 @@ async function syncStudioAgent(agentType, cwd2, eventType) {
   const activeAgents = getActiveAgentsFromList(allAgents);
   const synced = syncAgentProfilesFromDefinitions(activeAgents, {
     markMissingAsDeprecated: true,
-    deprecationSourcePathPrefix: path18.join(projectRoot, ".claude", "agents")
+    deprecationSourcePathPrefix: path18.join(projectRoot, ".agent-os", "agents")
   });
   const profile = getAgentProfileByType(agentType);
   if (!profile) {
@@ -416583,7 +416598,7 @@ function getInvokedBinary() {
 async function getDoctorDiagnostic() {
   return {
     installationType: "package-manager",
-    version: "1.0.0-alpha.26",
+    version: "1.0.0-alpha.28",
     installationPath: process.argv[1] ?? "",
     invokedBinary: getInvokedBinary(),
     configInstallMethod: "not set",
@@ -416988,7 +417003,7 @@ function buildPrimarySection() {
   });
   return [{
     label: "Version",
-    value: "1.0.0-alpha.26"
+    value: "1.0.0-alpha.28"
   }, {
     label: "Session name",
     value: nameValue
@@ -420631,7 +420646,7 @@ function Config({
         }
       })
     }) : showSubmenu === "ChannelDowngrade" ? /* @__PURE__ */ jsx_runtime170.jsx(ChannelDowngradeDialog, {
-      currentVersion: "1.0.0-alpha.26",
+      currentVersion: "1.0.0-alpha.28",
       onChoice: (choice) => {
         setShowSubmenu(null);
         setTabsHidden(false);
@@ -420643,7 +420658,7 @@ function Config({
           autoUpdatesChannel: "stable"
         };
         if (choice === "stay") {
-          newSettings.minimumVersion = "1.0.0-alpha.26";
+          newSettings.minimumVersion = "1.0.0-alpha.28";
         }
         updateSettingsForSource("userSettings", newSettings);
         setSettingsData((prev_27) => ({
@@ -428634,7 +428649,7 @@ function HelpV2(t0) {
   let t6;
   if ($3[31] !== tabs) {
     t6 = /* @__PURE__ */ jsx_runtime196.jsx(Tabs, {
-      title: `Agent-OS v${"1.0.0-alpha.26"}`,
+      title: `Agent-OS v${"1.0.0-alpha.28"}`,
       color: "professionalBlue",
       defaultTab: "general",
       children: tabs
@@ -431762,7 +431777,7 @@ var init_user = __esm(() => {
       deviceId,
       sessionId: getSessionId(),
       email: getEmail(),
-      appVersion: "1.0.0-alpha.26",
+      appVersion: "1.0.0-alpha.28",
       platform: getHostPlatformForAnalytics(),
       organizationUuid,
       accountUuid,
@@ -452013,7 +452028,7 @@ function getAllReleaseNotes(changelogContent = getStoredChangelogFromMemory()) {
     return [];
   }
 }
-async function checkForReleaseNotes(lastSeenVersion, currentVersion = "1.0.0-alpha.26") {
+async function checkForReleaseNotes(lastSeenVersion, currentVersion = "1.0.0-alpha.28") {
   if (process.env.USER_TYPE === "ant") {
     const changelog = "";
     if (changelog) {
@@ -452040,7 +452055,7 @@ async function checkForReleaseNotes(lastSeenVersion, currentVersion = "1.0.0-alp
     releaseNotes
   };
 }
-function checkForReleaseNotesSync(lastSeenVersion, currentVersion = "1.0.0-alpha.26") {
+function checkForReleaseNotesSync(lastSeenVersion, currentVersion = "1.0.0-alpha.28") {
   if (process.env.USER_TYPE === "ant") {
     const changelog = "";
     if (changelog) {
@@ -453167,7 +453182,7 @@ function getRecentActivitySync() {
   return cachedActivity;
 }
 function getLogoDisplayData() {
-  const version2 = process.env.DEMO_VERSION ?? "1.0.0-alpha.26";
+  const version2 = process.env.DEMO_VERSION ?? "1.0.0-alpha.28";
   const serverUrl = getDirectConnectServerUrl();
   const displayPath = process.env.DEMO_VERSION ? "/code/claude" : getDisplayPath(getCwd());
   const cwd2 = serverUrl ? `${displayPath} in ${serverUrl.replace(/^https?:\/\//, "")}` : displayPath;
@@ -454382,7 +454397,7 @@ function LogoV2() {
   if ($3[2] === Symbol.for("react.memo_cache_sentinel")) {
     t2 = () => {
       const currentConfig = getGlobalConfig();
-      if (currentConfig.lastReleaseNotesSeen === "1.0.0-alpha.26") {
+      if (currentConfig.lastReleaseNotesSeen === "1.0.0-alpha.28") {
         return;
       }
       saveGlobalConfig(_temp328);
@@ -455048,12 +455063,12 @@ function AgentOsPoster() {
   });
 }
 function _temp328(current) {
-  if (current.lastReleaseNotesSeen === "1.0.0-alpha.26") {
+  if (current.lastReleaseNotesSeen === "1.0.0-alpha.28") {
     return current;
   }
   return {
     ...current,
-    lastReleaseNotesSeen: "1.0.0-alpha.26"
+    lastReleaseNotesSeen: "1.0.0-alpha.28"
   };
 }
 function _temp245(s_0) {
@@ -475457,7 +475472,7 @@ var init_agentDisplay = __esm(() => {
 var AGENT_PATHS;
 var init_types20 = __esm(() => {
   AGENT_PATHS = {
-    FOLDER_NAME: ".claude",
+    FOLDER_NAME: ".agent-os",
     AGENTS_DIR: "agents"
   };
 });
@@ -475491,7 +475506,7 @@ function getAgentDirectoryPath(location) {
     case "flagSettings":
       throw new Error(`Cannot get directory path for ${location} agents`);
     case "userSettings":
-      return join129(getClaudeConfigHomeDir(), AGENT_PATHS.AGENTS_DIR);
+      return join129(getAgentOSConfigHomeDir(), AGENT_PATHS.AGENTS_DIR);
     case "projectSettings":
       return join129(getCwd(), AGENT_PATHS.FOLDER_NAME, AGENT_PATHS.AGENTS_DIR);
     case "policySettings":
@@ -481630,7 +481645,7 @@ async function captureMemoryDiagnostics(trigger, dumpNumber = 0) {
     smapsRollup,
     platform: process.platform,
     nodeVersion: process.version,
-    ccVersion: "1.0.0-alpha.26"
+    ccVersion: "1.0.0-alpha.28"
   };
 }
 async function performHeapDump(trigger = "manual", dumpNumber = 0) {
@@ -482203,7 +482218,7 @@ var init_bridge_kick = __esm(() => {
 var call58 = async () => {
   return {
     type: "text",
-    value: `${"1.0.0-alpha.26"} (built ${"2026-05-22T09:53:25Z"})`
+    value: `${"1.0.0-alpha.28"} (built ${"2026-05-25T15:42:31Z"})`
   };
 }, version2, version_default;
 var init_version = __esm(() => {
@@ -491695,7 +491710,7 @@ function generateHtmlReport(data, insights) {
 </html>`;
 }
 function buildExportData(data, insights, facets, remoteStats) {
-  const version3 = typeof MACRO !== "undefined" ? "1.0.0-alpha.26" : "unknown";
+  const version3 = typeof MACRO !== "undefined" ? "1.0.0-alpha.28" : "unknown";
   const remote_hosts_collected = remoteStats?.hosts.filter((h3) => h3.sessionCount > 0).map((h3) => h3.name);
   const facets_summary = {
     total: facets.size,
@@ -508970,13 +508985,10 @@ import { lstat as lstat4, readdir as readdir27, readFile as readFile49, realpath
 import { homedir as homedir33 } from "os";
 import { dirname as dirname59, join as join143, resolve as resolve46, sep as sep33 } from "path";
 function getProjectConfigSubdirCandidates(root3, subdir) {
-  if (subdir === "skills") {
-    return [
-      join143(root3, ".agent-os", subdir),
-      join143(root3, ".claude", subdir)
-    ];
+  if (subdir === "agents" || subdir === "skills" || subdir === "commands") {
+    return [join143(root3, ".agent-os", subdir)];
   }
-  return [join143(root3, ".claude", subdir)];
+  return [join143(root3, ".agent-os", subdir), join143(root3, ".claude", subdir)];
 }
 function extractDescriptionFromMarkdown(content, defaultDescription = "Custom item") {
   const lines2 = content.split(`
@@ -509188,7 +509200,7 @@ async function loadMarkdownFiles(dir) {
   }));
   return results.filter((_) => _ !== null);
 }
-var CLAUDE_CONFIG_DIRECTORIES, loadMarkdownFilesForSubdir;
+var AGENT_OS_CONFIG_DIRECTORIES, CLAUDE_CONFIG_DIRECTORIES, loadMarkdownFilesForSubdir;
 var init_markdownConfigLoader = __esm(() => {
   init_memoize();
   init_state();
@@ -509203,7 +509215,7 @@ var init_markdownConfigLoader = __esm(() => {
   init_constants2();
   init_managedPath();
   init_pluginOnlyPolicy();
-  CLAUDE_CONFIG_DIRECTORIES = [
+  AGENT_OS_CONFIG_DIRECTORIES = [
     "commands",
     "agents",
     "output-styles",
@@ -509211,10 +509223,11 @@ var init_markdownConfigLoader = __esm(() => {
     "workflows",
     ...[]
   ];
+  CLAUDE_CONFIG_DIRECTORIES = AGENT_OS_CONFIG_DIRECTORIES;
   loadMarkdownFilesForSubdir = memoize_default(async function(subdir, cwd2) {
     const searchStartTime = Date.now();
-    const userDir = join143(getClaudeConfigHomeDir(), subdir);
-    const managedDir = join143(getManagedFilePath(), ".claude", subdir);
+    const userDir = join143(getAgentOSConfigHomeDir(), subdir);
+    const managedDir = subdir === "agents" || subdir === "skills" || subdir === "commands" ? join143(getManagedFilePath(), subdir) : join143(getManagedFilePath(), ".claude", subdir);
     const projectDirs = getProjectDirsUpToHome(subdir, cwd2);
     const gitRoot = findGitRoot(cwd2);
     const canonicalRoot = findCanonicalGitRoot(cwd2);
@@ -516027,7 +516040,7 @@ var init_filesystem = __esm(() => {
   });
   getBundledSkillsRoot = memoize_default(function getBundledSkillsRoot2() {
     const nonce = randomBytes18(16).toString("hex");
-    return join146(getClaudeTempDir(), "bundled-skills", "1.0.0-alpha.26", nonce);
+    return join146(getClaudeTempDir(), "bundled-skills", "1.0.0-alpha.28", nonce);
   });
   getResolvedWorkingDirPaths = memoize_default(getPathsForPermissionCheck);
 });
@@ -521957,7 +521970,7 @@ function computeFingerprintFromMessages(messages) {
 }
 var AGENT_OS_VERSION5, FINGERPRINT_SALT = "59cf53e54c78";
 var init_fingerprint = __esm(() => {
-  AGENT_OS_VERSION5 = typeof MACRO !== "undefined" ? "1.0.0-alpha.26" : "dev";
+  AGENT_OS_VERSION5 = typeof MACRO !== "undefined" ? "1.0.0-alpha.28" : "dev";
 });
 
 // src/services/compact/apiMicrocompact.ts
@@ -523711,7 +523724,7 @@ async function sideQuery(opts) {
     betas.push(STRUCTURED_OUTPUTS_BETA_HEADER);
   }
   const messageText = extractFirstUserMessageText(messages);
-  const fingerprint = computeFingerprint(messageText, "1.0.0-alpha.26");
+  const fingerprint = computeFingerprint(messageText, "1.0.0-alpha.28");
   const attributionHeader = getAttributionHeader(fingerprint);
   const systemBlocks = [
     attributionHeader ? { type: "text", text: attributionHeader } : null,
@@ -525630,7 +525643,7 @@ function appendToLog(path24, message) {
     cwd: getFsImplementation().cwd(),
     userType: process.env.USER_TYPE,
     sessionId: getSessionId(),
-    version: "1.0.0-alpha.26"
+    version: "1.0.0-alpha.28"
   };
   getLogWriter(path24).write(messageWithTimestamp);
 }
@@ -528608,7 +528621,7 @@ function getTelemetryAttributes() {
     attributes["session.id"] = sessionId;
   }
   if (shouldIncludeAttribute("OTEL_METRICS_INCLUDE_VERSION")) {
-    attributes["app.version"] = "1.0.0-alpha.26";
+    attributes["app.version"] = "1.0.0-alpha.28";
   }
   if (envDynamic.terminal) {
     attributes["terminal.type"] = envDynamic.terminal;
@@ -538752,7 +538765,7 @@ function buildSystemInitMessage(inputs) {
     slash_commands: inputs.commands.filter((c5) => c5.userInvocable !== false).map((c5) => c5.name),
     apiKeySource: getAnthropicApiKeyWithSource().source,
     betas: getSdkBetas(),
-    claude_code_version: "1.0.0-alpha.26",
+    claude_code_version: "1.0.0-alpha.28",
     output_style: outputStyle2,
     agents: inputs.agents.map((agent) => agent.agentType),
     skills: inputs.skills.filter((s2) => s2.userInvocable !== false).map((skill) => skill.name),
@@ -561221,7 +561234,7 @@ function buildStatusLineCommandInput(permissionMode, exceeds200kTokens, settings
       project_dir: getOriginalCwd(),
       added_dirs: addedDirs
     },
-    version: "1.0.0-alpha.26",
+    version: "1.0.0-alpha.28",
     output_style: {
       name: outputStyleName
     },
@@ -570751,10 +570764,7 @@ async function getWatchablePaths() {
     } catch {}
   }
   for (const dir of getAdditionalDirectoriesForClaudeMd()) {
-    for (const additionalSkillsPath of [
-      platformPath2.join(dir, ".agent-os", "skills"),
-      platformPath2.join(dir, ".claude", "skills")
-    ]) {
+    for (const additionalSkillsPath of [platformPath2.join(dir, ".agent-os", "skills")]) {
       try {
         await fs11.stat(additionalSkillsPath);
         paths2.push(additionalSkillsPath);
@@ -584577,7 +584587,7 @@ function WelcomeV2() {
             dimColor: true,
             children: [
               "v",
-              "1.0.0-alpha.26",
+              "1.0.0-alpha.28",
               " "
             ]
           })
@@ -584777,7 +584787,7 @@ function WelcomeV2() {
           dimColor: true,
           children: [
             "v",
-            "1.0.0-alpha.26",
+            "1.0.0-alpha.28",
             " "
           ]
         })
@@ -585003,7 +585013,7 @@ function AppleTerminalWelcomeV2(t0) {
         dimColor: true,
         children: [
           "v",
-          "1.0.0-alpha.26",
+          "1.0.0-alpha.28",
           " "
         ]
       });
@@ -585257,7 +585267,7 @@ function AppleTerminalWelcomeV2(t0) {
       dimColor: true,
       children: [
         "v",
-        "1.0.0-alpha.26",
+        "1.0.0-alpha.28",
         " "
       ]
     });
@@ -586723,7 +586733,7 @@ function completeOnboarding() {
   saveGlobalConfig((current) => ({
     ...current,
     hasCompletedOnboarding: true,
-    lastOnboardingVersion: "1.0.0-alpha.26"
+    lastOnboardingVersion: "1.0.0-alpha.28"
   }));
 }
 function showDialog(root3, renderer) {
@@ -595186,8 +595196,8 @@ async function getEnvLessBridgeConfig() {
 }
 async function checkEnvLessBridgeMinVersion() {
   const cfg = await getEnvLessBridgeConfig();
-  if (cfg.min_version && lt("1.0.0-alpha.26", cfg.min_version)) {
-    return `Your version of Agent-OS (${"1.0.0-alpha.26"}) is too old for Remote Control.
+  if (cfg.min_version && lt("1.0.0-alpha.28", cfg.min_version)) {
+    return `Your version of Agent-OS (${"1.0.0-alpha.28"}) is too old for Remote Control.
 Version ${cfg.min_version} or higher is required. Run \`agent-os update\` to update.`;
   }
   return null;
@@ -595660,7 +595670,7 @@ async function initBridgeCore(params) {
   const rawApi = createBridgeApiClient({
     baseUrl,
     getAccessToken,
-    runnerVersion: "1.0.0-alpha.26",
+    runnerVersion: "1.0.0-alpha.28",
     onDebug: logForDebugging,
     onAuth401,
     getTrustedDeviceToken
@@ -601339,7 +601349,7 @@ async function startMCPServer(cwd3, debug2, verbose) {
   setCwd(cwd3);
   const server = new Server({
     name: "claude/tengu",
-    version: "1.0.0-alpha.26"
+    version: "1.0.0-alpha.28"
   }, {
     capabilities: {
       tools: {}
@@ -606850,7 +606860,7 @@ ${customInstructions}` : customInstructions;
       }
     }
     logForDiagnosticsNoPII("info", "started", {
-      version: "1.0.0-alpha.26",
+      version: "1.0.0-alpha.28",
       is_native_binary: isInBundledMode()
     });
     registerCleanup(async () => {
@@ -607642,7 +607652,7 @@ Usage: agent-os --remote "your task description"`, () => gracefulShutdown(1));
         pendingHookMessages
       }, renderAndRun);
     }
-  }).version("1.0.0-alpha.26 (Agent-OS)", "-v, --version", "Output the version number");
+  }).version("1.0.0-alpha.28 (Agent-OS)", "-v, --version", "Output the version number");
   program2.option("-w, --worktree [name]", "Create a new git worktree for this session (optionally specify a name)");
   program2.option("--tmux", "Create a tmux session for the worktree (requires --worktree). Uses iTerm2 native panes when available; use --tmux=classic for traditional tmux.");
   if (canUserConfigureAdvisor()) {
@@ -609480,7 +609490,7 @@ if (false) {}
 async function main2() {
   const args = process.argv.slice(2);
   if (args.length === 1 && (args[0] === "--version" || args[0] === "-v" || args[0] === "-V")) {
-    console.log(`${"1.0.0-alpha.26"} (Agent-OS)`);
+    console.log(`${"1.0.0-alpha.28"} (Agent-OS)`);
     return;
   }
   const {

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@vionwilliams/agent-os",
-  "version": "1.0.0-alpha.26",
+  "version": "1.0.0-alpha.28",
   "description": "Agent-OS — 智能任务通用工作系统：多模型路由、意图编排、多智能体协调、DataHub 与可编程面板。",
   "type": "module",
   "private": false,