@vinaes/succ 1.3.31 → 1.5.37

package/dist/mcp/tools/graph.js

@@ -2,111 +2,97 @@
  * MCP Knowledge Graph tools
  *
  * - succ_link: Create/manage memory links (knowledge graph)
- * - succ_explore: Explore connected memories
  */
 import { z } from 'zod';
 import { createMemoryLink, deleteMemoryLink, getMemoryWithLinks, findConnectedMemories, autoLinkSimilarMemories, getGraphStats, getMemoryById, LINK_RELATIONS, closeDb, } from '../../lib/storage/index.js';
-import { projectPathParam, applyProjectPath } from '../helpers.js';
+import { invalidateGraphCache, shortestPath, whyRelated, getArticulationPoints, computePageRank, computeBetweennessCentrality, detectLouvainCommunities, } from '../../lib/graph/graphology-bridge.js';
+import { logWarn } from '../../lib/fault-logger.js';
+import { projectPathParam, applyProjectPath, createToolResponse, createErrorResponse, } from '../helpers.js';
 export function registerGraphTools(server) {
     // Tool: succ_link - Create/manage memory links (knowledge graph)
-    server.tool('succ_link', 'Create or manage links between memories to build a knowledge graph. Links help track relationships between decisions, learnings, and context.', {
-        action: z
-            .enum([
-            'create',
-            'delete',
-            'show',
-            'graph',
-            'auto',
-            'enrich',
-            'proximity',
-            'communities',
-            'centrality',
-            'export',
-            'cleanup',
-        ])
-            .describe('Action: create (new link), delete (remove link), show (memory with links), graph (stats), auto (auto-link similar), enrich (LLM classify relations), proximity (co-occurrence links), communities (detect clusters), centrality (compute scores), export (Obsidian/JSON graph export), cleanup (prune weak links, enrich, connect orphans, rebuild communities + centrality)'),
-        source_id: z.number().optional().describe('Source memory ID (for create/delete/show)'),
-        target_id: z.number().optional().describe('Target memory ID (for create/delete)'),
-        relation: z
-            .enum(LINK_RELATIONS)
-            .optional()
-            .describe('Relation type: related, caused_by, leads_to, similar_to, contradicts, implements, supersedes, references'),
-        threshold: z
-            .number()
-            .optional()
-            .describe('Similarity threshold for auto-linking (default: 0.75)'),
-        project_path: projectPathParam,
-    }, async ({ action, source_id, target_id, relation, threshold, project_path }) => {
-        await applyProjectPath(project_path);
+    server.registerTool('succ_link', {
+        description: 'Create or manage links between memories to build a knowledge graph. Links help track relationships between decisions, learnings, and context.\n\nExamples:\n- Link memories: succ_link(action="create", source_id=1, target_id=2, relation="caused_by")\n- View connections: succ_link(action="show", source_id=42)\n- Auto-link similar: succ_link(action="auto", threshold=0.8)\n- Full maintenance: succ_link(action="cleanup")\n- Explore connections: succ_link(action="explore", source_id=42, depth=3)',
+        inputSchema: {
+            action: z
+                .enum([
+                'create',
+                'delete',
+                'show',
+                'graph',
+                'auto',
+                'enrich',
+                'proximity',
+                'communities',
+                'centrality',
+                'export',
+                'cleanup',
+                'explore',
+                'shortest_path',
+                'why_related',
+                'critical_nodes',
+                'pagerank',
+                'summarize',
+                'co_change',
+                'bridge',
+            ])
+                .describe('Action: create, delete, show, graph, auto, enrich, proximity, communities, centrality, export, cleanup, explore, shortest_path, why_related, critical_nodes, pagerank, summarize (GraphRAG community summaries), co_change (git co-change analysis), bridge (auto-create code↔knowledge edges, or find memories for a code path via file_path)'),
+            source_id: z.number().optional().describe('Source memory ID (for create/delete/show)'),
+            target_id: z.number().optional().describe('Target memory ID (for create/delete)'),
+            relation: z
+                .enum(LINK_RELATIONS)
+                .optional()
+                .describe('Relation type: related, caused_by, leads_to, similar_to, contradicts, implements, supersedes, references'),
+            threshold: z
+                .number()
+                .optional()
+                .describe('Similarity threshold for auto-linking (default: 0.75)'),
+            depth: z
+                .number()
+                .optional()
+                .default(2)
+                .describe('Max traversal depth (for explore, default: 2)'),
+            memory_id: z.number().optional().describe('Alias for source_id (for explore)'),
+            file_path: z.string().optional().describe('File path (for co_change or bridge actions)'),
+            project_path: projectPathParam,
+        },
+        annotations: {
+            readOnlyHint: false,
+            destructiveHint: true,
+            idempotentHint: false,
+            openWorldHint: false,
+        },
+    }, async ({ action, source_id, target_id, relation, threshold, depth, memory_id, file_path, project_path, }) => {
         try {
+            await applyProjectPath(project_path);
+            const trimmedFilePath = file_path?.trim() || undefined;
             switch (action) {
                 case 'create': {
-                    if (!source_id || !target_id) {
-                        return {
-                            content: [
-                                {
-                                    type: 'text',
-                                    text: 'Both source_id and target_id are required to create a link.',
-                                },
-                            ],
-                        };
+                    if (source_id == null || target_id == null) {
+                        return createToolResponse('Both source_id and target_id are required to create a link.');
                     }
                     const result = await createMemoryLink(source_id, target_id, relation || 'related');
-                    return {
-                        content: [
-                            {
-                                type: 'text',
-                                text: result.created
-                                    ? `Created link: memory #${source_id} --[${relation || 'related'}]--> memory #${target_id}`
-                                    : `Link already exists (id: ${result.id})`,
-                            },
-                        ],
-                    };
+                    invalidateGraphCache();
+                    return createToolResponse(result.created
+                        ? `Created link: memory #${source_id} --[${relation || 'related'}]--> memory #${target_id}`
+                        : `Link already exists (id: ${result.id})`);
                 }
                 case 'delete': {
-                    if (!source_id || !target_id) {
-                        return {
-                            content: [
-                                {
-                                    type: 'text',
-                                    text: 'Both source_id and target_id are required to delete a link.',
-                                },
-                            ],
-                        };
+                    if (source_id == null || target_id == null) {
+                        return createToolResponse('Both source_id and target_id are required to delete a link.');
                     }
                     const deleted = await deleteMemoryLink(source_id, target_id, relation);
-                    return {
-                        content: [
-                            {
-                                type: 'text',
-                                text: deleted
-                                    ? `Deleted link between memory #${source_id} and #${target_id}`
-                                    : 'No matching link found.',
-                            },
-                        ],
-                    };
+                    invalidateGraphCache();
+                    return createToolResponse(deleted
+                        ? `Deleted link between memory #${source_id} and #${target_id}`
+                        : 'No matching link found.');
                 }
                 case 'show': {
-                    if (!source_id) {
-                        return {
-                            content: [
-                                {
-                                    type: 'text',
-                                    text: 'source_id is required to show a memory with its links.',
-                                },
-                            ],
-                        };
+                    if (source_id == null) {
+                        return createToolResponse('source_id is required to show a memory with its links.');
                     }
                     const memory = await getMemoryWithLinks(source_id);
                     if (!memory) {
-                        return {
-                            content: [
-                                {
-                                    type: 'text',
-                                    text: `Memory #${source_id} not found.`,
-                                },
-                            ],
-                        };
+                        return createToolResponse(`Memory #${source_id} not found.`);
                     }
                     const outLinks = memory.outgoing_links.length > 0
                         ? memory.outgoing_links
@@ -129,9 +115,7 @@ ${outLinks}
 
 Incoming links:
 ${inLinks}`;
-                    return {
-                        content: [{ type: 'text', text }],
-                    };
+                    return createToolResponse(text);
                 }
                 case 'graph': {
                     const stats = await getGraphStats();
@@ -147,187 +131,195 @@ Isolated (no links): ${stats.isolated_memories}
 
 Links by relation:
 ${relationStats}`;
-                    return {
-                        content: [{ type: 'text', text }],
-                    };
+                    return createToolResponse(text);
                 }
                 case 'auto': {
                     const th = threshold || 0.75;
                     const created = await autoLinkSimilarMemories(th, 3);
-                    return {
-                        content: [
-                            {
-                                type: 'text',
-                                text: `Auto-linked similar memories (threshold: ${th}). Created ${created} new links.`,
-                            },
-                        ],
-                    };
+                    invalidateGraphCache();
+                    return createToolResponse(`Auto-linked similar memories (threshold: ${th}). Created ${created} new links.`);
                 }
                 case 'enrich': {
                     const { enrichExistingLinks } = await import('../../lib/graph/llm-relations.js');
                     const result = await enrichExistingLinks({ batchSize: 5 });
-                    return {
-                        content: [
-                            {
-                                type: 'text',
-                                text: `LLM relation enrichment: ${result.enriched} enriched, ${result.failed} failed, ${result.skipped} skipped.`,
-                            },
-                        ],
-                    };
+                    invalidateGraphCache();
+                    return createToolResponse(`LLM relation enrichment: ${result.enriched} enriched, ${result.failed} failed, ${result.skipped} skipped.`);
                 }
                 case 'proximity': {
                     const { createProximityLinks } = await import('../../lib/graph/contextual-proximity.js');
                     const result = await createProximityLinks({ minCooccurrence: 2 });
-                    return {
-                        content: [
-                            {
-                                type: 'text',
-                                text: `Contextual proximity: ${result.created} links created, ${result.skipped} skipped (${result.total_pairs} pairs found).`,
-                            },
-                        ],
-                    };
+                    invalidateGraphCache();
+                    return createToolResponse(`Contextual proximity: ${result.created} links created, ${result.skipped} skipped (${result.total_pairs} pairs found).`);
                 }
                 case 'communities': {
-                    const { detectCommunities } = await import('../../lib/graph/community-detection.js');
-                    const result = await detectCommunities();
+                    const result = await detectLouvainCommunities();
                     const summary = result.communities
                         .map((c) => `  Community ${c.id}: ${c.size} members`)
                         .join('\n');
-                    return {
-                        content: [
-                            {
-                                type: 'text',
-                                text: `Detected ${result.communities.length} communities, ${result.isolated} isolated nodes.\n${summary}`,
-                            },
-                        ],
-                    };
+                    return createToolResponse(`Louvain community detection: ${result.communities.length} communities, ${result.isolated} isolated nodes (modularity: ${result.modularity.toFixed(4)}).\n${summary}`);
                 }
                 case 'centrality': {
+                    const prScores = await computePageRank();
+                    const bcScores = await computeBetweennessCentrality();
+                    // Also update the storage-level centrality cache
                     const { updateCentralityCache } = await import('../../lib/graph/centrality.js');
-                    const result = await updateCentralityCache();
-                    return {
-                        content: [
-                            {
-                                type: 'text',
-                                text: `Updated centrality scores for ${result.updated} memories.`,
-                            },
-                        ],
-                    };
+                    const cacheResult = await updateCentralityCache();
+                    // Show top 10 by PageRank
+                    const top10 = [...prScores.entries()]
+                        .sort(([, a], [, b]) => b - a)
+                        .slice(0, 10)
+                        .map(([id, pr]) => {
+                        const bc = bcScores.get(id) ?? 0;
+                        return `  #${id}: PageRank=${pr.toFixed(6)}, Betweenness=${bc.toFixed(6)}`;
+                    })
+                        .join('\n');
+                    return createToolResponse(`Centrality scores computed for ${prScores.size} memories (cache updated: ${cacheResult.updated}).\n\nTop 10 by PageRank:\n${top10 || '  (no nodes)'}`);
                 }
                 case 'export': {
                     const { exportGraphSilent } = await import('../../lib/graph-export.js');
                     const result = await exportGraphSilent('obsidian');
                     if (result.memoriesExported === 0) {
-                        return {
-                            content: [{ type: 'text', text: 'No memories to export.' }],
-                        };
+                        return createToolResponse('No memories to export.');
                     }
-                    return {
-                        content: [
-                            {
-                                type: 'text',
-                                text: `Exported ${result.memoriesExported} memories and ${result.linksExported} links to Obsidian brain vault.`,
-                            },
-                        ],
-                    };
+                    return createToolResponse(`Exported ${result.memoriesExported} memories and ${result.linksExported} links to Obsidian brain vault.`);
                 }
                 case 'cleanup': {
                     const { graphCleanup } = await import('../../lib/graph/cleanup.js');
                     const result = await graphCleanup({
                         pruneThreshold: threshold,
                     });
-                    return {
-                        content: [
-                            {
-                                type: 'text',
-                                text: `Graph cleanup complete:\n  Pruned: ${result.pruned}\n  Enriched: ${result.enriched}\n  Orphans connected: ${result.orphansConnected}\n  Communities: ${result.communitiesDetected}\n  Centrality updated: ${result.centralityUpdated}`,
-                            },
-                        ],
-                    };
+                    invalidateGraphCache();
+                    return createToolResponse(`Graph cleanup complete:\n  Pruned: ${result.pruned}\n  Enriched: ${result.enriched}\n  Orphans connected: ${result.orphansConnected}\n  Communities: ${result.communitiesDetected}\n  Centrality updated: ${result.centralityUpdated}`);
                 }
-                default:
-                    return {
-                        content: [
-                            {
-                                type: 'text',
-                                text: 'Unknown action. Use: create, delete, show, graph, auto, enrich, proximity, communities, centrality, export, or cleanup.',
-                            },
-                        ],
-                    };
-            }
-        }
-        catch (error) {
-            return {
-                content: [
-                    {
-                        type: 'text',
-                        text: `Error: ${error.message}`,
-                    },
-                ],
-                isError: true,
-            };
-        }
-        finally {
-            closeDb();
-        }
-    });
-    // Tool: succ_explore - Explore connected memories
-    server.tool('succ_explore', 'Explore the knowledge graph starting from a memory. Find connected memories through links.', {
-        memory_id: z.number().describe('Starting memory ID'),
-        depth: z.number().optional().default(2).describe('Max traversal depth (default: 2)'),
-        project_path: projectPathParam,
-    }, async ({ memory_id, depth, project_path }) => {
-        await applyProjectPath(project_path);
-        try {
-            const connected = await findConnectedMemories(memory_id, depth);
-            if (connected.length === 0) {
-                const memory = await getMemoryById(memory_id);
-                if (!memory) {
-                    return {
-                        content: [
-                            {
-                                type: 'text',
-                                text: `Memory #${memory_id} not found.`,
-                            },
-                        ],
-                    };
-                }
-                return {
-                    content: [
-                        {
-                            type: 'text',
-                            text: `Memory #${memory_id} has no connections within ${depth} hops.\n\nContent: ${memory.content.substring(0, 200)}...`,
-                        },
-                    ],
-                };
-            }
-            const formatted = connected
-                .map(({ memory, depth: d, path: memPath }) => {
-                const pathStr = memPath.map((id) => `#${id}`).join(' → ');
-                return `[Depth ${d}] Memory #${memory.id} (${pathStr})
+                case 'explore': {
+                    const startId = source_id || memory_id;
+                    if (!startId) {
+                        return createToolResponse('source_id (or memory_id) is required for explore.');
+                    }
+                    const connected = await findConnectedMemories(startId, depth);
+                    if (connected.length === 0) {
+                        const memory = await getMemoryById(startId);
+                        if (!memory) {
+                            return createToolResponse(`Memory #${startId} not found.`);
+                        }
+                        return createToolResponse(`Memory #${startId} has no connections within ${depth} hops.\n\nContent: ${memory.content.substring(0, 200)}...`);
+                    }
+                    const formatted = connected
+                        .map(({ memory, depth: d, path: memPath }) => {
+                        const pathStr = memPath.map((id) => `#${id}`).join(' → ');
+                        return `[Depth ${d}] Memory #${memory.id} (${pathStr})
   ${memory.content.substring(0, 150)}${memory.content.length > 150 ? '...' : ''}
   Tags: ${memory.tags.join(', ') || '(none)'}`;
-            })
-                .join('\n\n');
-            return {
-                content: [
-                    {
-                        type: 'text',
-                        text: `Found ${connected.length} connected memories from #${memory_id} (max depth: ${depth}):\n\n${formatted}`,
-                    },
-                ],
-            };
+                    })
+                        .join('\n\n');
+                    return createToolResponse(`Found ${connected.length} connected memories from #${startId} (max depth: ${depth}):\n\n${formatted}`);
+                }
+                case 'shortest_path': {
+                    if (source_id == null || target_id == null) {
+                        return createToolResponse('Both source_id and target_id are required for shortest_path.');
+                    }
+                    const spResult = await shortestPath(source_id, target_id);
+                    if (!spResult) {
+                        return createToolResponse(`No path found between memory #${source_id} and #${target_id}.`);
+                    }
+                    const pathStr = spResult.path.map((id) => `#${id}`).join(' → ');
+                    return createToolResponse(`Shortest path (${spResult.path.length - 1} hops, weight: ${spResult.weight.toFixed(2)}):\n${pathStr}`);
+                }
+                case 'why_related': {
+                    if (source_id == null || target_id == null) {
+                        return createToolResponse('Both source_id and target_id are required for why_related.');
+                    }
+                    const wrResult = await whyRelated(source_id, target_id);
+                    if (!wrResult) {
+                        return createToolResponse(`One or both memories (#${source_id}, #${target_id}) not found in graph.`);
+                    }
+                    if (!wrResult.connected) {
+                        return createToolResponse(`Memories #${source_id} and #${target_id} are not connected in the knowledge graph.`);
+                    }
+                    const chain = wrResult.path
+                        .map((step, i) => {
+                        if (i < wrResult.path.length - 1) {
+                            return `#${step.memoryId} --[${step.relation || 'related'}]-->`;
+                        }
+                        return `#${step.memoryId}`;
+                    })
+                        .join(' ');
+                    return createToolResponse(`Relationship chain (${wrResult.path.length - 1} hops, distance ${wrResult.distance.toFixed(2)}):\n${chain}`);
+                }
+                case 'critical_nodes': {
+                    const points = await getArticulationPoints();
+                    if (points.length === 0) {
+                        return createToolResponse('No articulation points found. The graph has no single points of failure.');
+                    }
+                    // Enrich with memory content snippets
+                    const enriched = await Promise.all(points.slice(0, 20).map(async (id) => {
+                        const mem = await getMemoryById(id);
+                        const snippet = mem ? mem.content.substring(0, 100) : '(unknown)';
+                        return `  #${id}: ${snippet}${mem && mem.content.length > 100 ? '...' : ''}`;
+                    }));
+                    return createToolResponse(`Found ${points.length} critical nodes (articulation points):\n${enriched.join('\n')}${points.length > 20 ? `\n  ... and ${points.length - 20} more` : ''}`);
+                }
+                case 'pagerank': {
+                    const prMap = await computePageRank();
+                    if (prMap.size === 0) {
+                        return createToolResponse('No nodes in graph.');
+                    }
+                    const topN = 15;
+                    const sorted = [...prMap.entries()].sort(([, a], [, b]) => b - a).slice(0, topN);
+                    const lines = await Promise.all(sorted.map(async ([id, score]) => {
+                        const mem = await getMemoryById(id);
+                        const snippet = mem ? mem.content.substring(0, 80) : '(unknown)';
+                        return `  #${id} (${score.toFixed(6)}): ${snippet}${mem && mem.content.length > 80 ? '...' : ''}`;
+                    }));
+                    return createToolResponse(`PageRank — Top ${Math.min(topN, sorted.length)} of ${prMap.size} memories:\n${lines.join('\n')}`);
+                }
+                case 'summarize': {
+                    const { generateCommunitySummaries } = await import('../../lib/graph/community-summaries.js');
+                    const summResult = await generateCommunitySummaries();
+                    invalidateGraphCache();
+                    return createToolResponse(`Community summaries: ${summResult.summariesCreated} created, ${summResult.summariesFailed} failed, ${summResult.oldSummariesRemoved} old summaries removed (${summResult.communitiesProcessed} communities processed).`);
+                }
+                case 'co_change': {
+                    const { getCoChangesForFile, analyzeCoChanges } = await import('../../lib/git/co-change.js');
+                    if (trimmedFilePath) {
+                        const result = await getCoChangesForFile(trimmedFilePath);
+                        if (result.cochanges.length === 0) {
+                            return createToolResponse(`No co-change patterns found for "${trimmedFilePath}". The file may have few commits or mostly changes alone.`);
+                        }
+                        const lines = result.cochanges.map((c) => `  ${c.path} (${c.count} times, score: ${c.score.toFixed(2)})`);
+                        return createToolResponse(`Co-change analysis for "${trimmedFilePath}":\n\nFiles that frequently change together:\n${lines.join('\n')}`);
+                    }
+                    // No file_path — show overall top co-change pairs
+                    const result = await analyzeCoChanges();
+                    const topPairs = result.pairs.slice(0, 15);
+                    const lines = topPairs.map((p) => `  ${p.fileA} ↔ ${p.fileB} (${p.count} times, score: ${p.score.toFixed(2)})`);
+                    return createToolResponse(`Git co-change analysis (${result.totalCommits} commits, ${result.totalFiles} files):\n\nTop co-change pairs:\n${lines.join('\n') || '  (no co-change patterns found)'}`);
+                }
+                case 'bridge': {
+                    const { findMemoriesForCode, autoBridgeRecentMemories } = await import('../../lib/graph/bridge-edges.js');
+                    if (trimmedFilePath) {
+                        // Find memories linked to a specific code path
+                        const results = await findMemoriesForCode(trimmedFilePath);
+                        if (results.length === 0) {
+                            return createToolResponse(`No memories found referencing "${trimmedFilePath}".`);
+                        }
+                        const lines = results.map((r) => `  #${r.memoryId} [${r.relation}] (score: ${r.score.toFixed(3)}): ${r.content.substring(0, 120)}${r.content.length > 120 ? '...' : ''}`);
+                        return createToolResponse(`Memories referencing "${trimmedFilePath}":\n\n${lines.join('\n')}`);
+                    }
+                    // No trimmedFilePath — run auto-bridge scan
+                    const result = await autoBridgeRecentMemories();
+                    invalidateGraphCache();
+                    return createToolResponse(`Bridge edge scan: ${result.created} edges created, ${result.skipped} skipped, ${result.errors} errors.`);
+                }
+                default:
+                    return createToolResponse('Unknown action. Use: create, delete, show, graph, auto, enrich, proximity, communities, centrality, export, cleanup, explore, shortest_path, why_related, critical_nodes, pagerank, summarize, co_change, or bridge.');
+            }
         }
         catch (error) {
-            return {
-                content: [
-                    {
-                        type: 'text',
-                        text: `Error exploring: ${error.message}`,
-                    },
-                ],
-                isError: true,
-            };
+            logWarn('graph', `Graph tool error in action=${action}`, {
+                error: error instanceof Error ? error.message : String(error),
+            });
+            return createErrorResponse(`Error: ${error instanceof Error ? error.message : String(error)}`);
         }
         finally {
             closeDb();

package/dist/mcp/tools/graph.js.map

@@ -1 +1 @@
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package/dist/mcp/tools/indexing.d.ts

@@ -1,11 +1,5 @@
 /**
- * MCP Indexing tools
- *
- * - succ_index_file: Index a single documentation file
- * - succ_analyze_file: Analyze a source file and generate documentation
- * - succ_index_code_file: Index a single source code file
- * - succ_reindex: Detect and fix stale/deleted index entries
- * - succ_symbols: Extract AST symbols from a source file
+ * MCP Indexing tool — succ_index with actions: doc, code, analyze, refresh, symbols, scan
  */
 import { McpServer } from '@modelcontextprotocol/sdk/server/mcp.js';
 export declare function registerIndexingTools(server: McpServer): void;

package/dist/mcp/tools/indexing.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"indexing.d.ts","sourceRoot":"","sources":["../../../src/mcp/tools/indexing.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AAKpE,wBAAgB,qBAAqB,CAAC,MAAM,EAAE,SAAS,QA2TtD"}
+{"version":3,"file":"indexing.d.ts","sourceRoot":"","sources":["../../../src/mcp/tools/indexing.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,SAAS,EAAE,MAAM,yCAAyC,CAAC;AAUpE,wBAAgB,qBAAqB,CAAC,MAAM,EAAE,SAAS,QA4OtD"}