@vigolium/piolium 0.0.1

package/skills/sarif-parsing/resources/sarif_helpers.py

@@ -0,0 +1,331 @@
+"""
+SARIF Parsing Helper Functions
+
+Reusable utilities for working with SARIF files.
+No external dependencies beyond standard library.
+"""
+
+import hashlib
+import json
+from collections import defaultdict
+from collections.abc import Iterator
+from dataclasses import dataclass, field
+from pathlib import Path
+from typing import Any
+from urllib.parse import unquote
+
+
+@dataclass
+class Finding:
+    """Structured representation of a SARIF result."""
+
+    rule_id: str
+    level: str
+    message: str
+    file_path: str | None = None
+    start_line: int | None = None
+    end_line: int | None = None
+    start_column: int | None = None
+    end_column: int | None = None
+    fingerprint: str | None = None
+    tool_name: str | None = None
+    rule_name: str | None = None
+    raw: dict = field(default_factory=dict, repr=False)
+
+
+def load_sarif(path: str | Path) -> dict:
+    """Load and parse a SARIF file."""
+    with open(path) as f:
+        return json.load(f)
+
+
+def save_sarif(sarif: dict, path: str | Path, indent: int = 2) -> None:
+    """Save SARIF data to file."""
+    with open(path, "w") as f:
+        json.dump(sarif, f, indent=indent)
+
+
+def validate_version(sarif: dict) -> bool:
+    """Check if SARIF version is 2.1.0."""
+    return sarif.get("version") == "2.1.0"
+
+
+def normalize_path(uri: str, base_path: str = "") -> str:
+    """Normalize SARIF artifact URI to consistent path."""
+    if not uri:
+        return ""
+
+    # Remove file:// prefix
+    if uri.startswith("file://"):
+        uri = uri[7:]
+
+    # URL decode
+    uri = unquote(uri)
+
+    # Handle relative paths
+    if base_path and not Path(uri).is_absolute():
+        uri = str(Path(base_path) / uri)
+
+    return str(Path(uri))
+
+
+def safe_get(data: dict, *keys, default: Any = None) -> Any:
+    """Safely navigate nested dict structure."""
+    for key in keys:
+        if isinstance(data, dict):
+            data = data.get(key, {})
+        elif isinstance(data, list) and isinstance(key, int):
+            data = data[key] if 0 <= key < len(data) else {}
+        else:
+            return default
+    return data if data != {} else default
+
+
+def extract_location(result: dict) -> tuple[str | None, int | None, int | None]:
+    """Extract file path, start line, and end line from result."""
+    loc = safe_get(result, "locations", 0, default={})
+    phys = loc.get("physicalLocation", {})
+    region = phys.get("region", {})
+
+    file_path = safe_get(phys, "artifactLocation", "uri")
+    start_line = region.get("startLine")
+    end_line = region.get("endLine")
+
+    return file_path, start_line, end_line
+
+
+def iter_results(sarif: dict) -> Iterator[tuple[dict, dict]]:
+    """Iterate over all results with their run context."""
+    for run in sarif.get("runs", []):
+        for result in run.get("results", []):
+            yield result, run
+
+
+def extract_findings(sarif: dict) -> list[Finding]:
+    """Extract all findings as structured objects."""
+    findings = []
+
+    for result, run in iter_results(sarif):
+        tool_name = safe_get(run, "tool", "driver", "name")
+        file_path, start_line, end_line = extract_location(result)
+
+        loc = safe_get(result, "locations", 0, default={})
+        phys = loc.get("physicalLocation", {})
+        region = phys.get("region", {})
+
+        # Get fingerprint
+        fp = None
+        if result.get("partialFingerprints"):
+            fp = next(iter(result["partialFingerprints"].values()), None)
+        elif result.get("fingerprints"):
+            fp = next(iter(result["fingerprints"].values()), None)
+
+        findings.append(
+            Finding(
+                rule_id=result.get("ruleId", "unknown"),
+                level=result.get("level", "warning"),
+                message=safe_get(result, "message", "text", default=""),
+                file_path=file_path,
+                start_line=start_line,
+                end_line=end_line,
+                start_column=region.get("startColumn"),
+                end_column=region.get("endColumn"),
+                fingerprint=fp,
+                tool_name=tool_name,
+                raw=result,
+            )
+        )
+
+    return findings
+
+
+def filter_by_level(findings: list[Finding], *levels: str) -> list[Finding]:
+    """Filter findings by severity level(s)."""
+    return [f for f in findings if f.level in levels]
+
+
+def filter_by_file(findings: list[Finding], pattern: str) -> list[Finding]:
+    """Filter findings by file path pattern (substring match)."""
+    return [f for f in findings if f.file_path and pattern in f.file_path]
+
+
+def filter_by_rule(findings: list[Finding], *rule_ids: str) -> list[Finding]:
+    """Filter findings by rule ID(s)."""
+    return [f for f in findings if f.rule_id in rule_ids]
+
+
+def sort_by_severity(findings: list[Finding], reverse: bool = False) -> list[Finding]:
+    """Sort findings by severity (error > warning > note > none)."""
+    severity_order = {"error": 0, "warning": 1, "note": 2, "none": 3}
+    return sorted(findings, key=lambda f: severity_order.get(f.level, 99), reverse=reverse)
+
+
+def group_by_file(findings: list[Finding]) -> dict[str, list[Finding]]:
+    """Group findings by file path."""
+    grouped = defaultdict(list)
+    for f in findings:
+        key = f.file_path or "unknown"
+        grouped[key].append(f)
+    return dict(grouped)
+
+
+def group_by_rule(findings: list[Finding]) -> dict[str, list[Finding]]:
+    """Group findings by rule ID."""
+    grouped = defaultdict(list)
+    for f in findings:
+        grouped[f.rule_id].append(f)
+    return dict(grouped)
+
+
+def count_by_level(findings: list[Finding]) -> dict[str, int]:
+    """Count findings by severity level."""
+    counts = defaultdict(int)
+    for f in findings:
+        counts[f.level] += 1
+    return dict(counts)
+
+
+def count_by_rule(findings: list[Finding]) -> dict[str, int]:
+    """Count findings by rule ID."""
+    counts = defaultdict(int)
+    for f in findings:
+        counts[f.rule_id] += 1
+    return dict(counts)
+
+
+def compute_fingerprint(result: dict, include_message: bool = True) -> str:
+    """Compute stable fingerprint from result data."""
+    components = [result.get("ruleId", "")]
+
+    file_path, start_line, _ = extract_location(result)
+    if file_path:
+        # Use only filename, not full path (more stable across environments)
+        components.append(Path(file_path).name)
+    if start_line:
+        components.append(str(start_line))
+    if include_message:
+        msg = safe_get(result, "message", "text", default="")
+        # First 50 chars of message for stability
+        components.append(msg[:50])
+
+    return hashlib.sha256("|".join(components).encode()).hexdigest()[:16]
+
+
+def deduplicate(findings: list[Finding]) -> list[Finding]:
+    """Remove duplicate findings based on fingerprints."""
+    seen = set()
+    unique = []
+
+    for f in findings:
+        key = f.fingerprint or compute_fingerprint(f.raw)
+        if key not in seen:
+            seen.add(key)
+            unique.append(f)
+
+    return unique
+
+
+def merge_sarif_files(*paths: str | Path) -> dict:
+    """Merge multiple SARIF files into one."""
+    merged = {
+        "version": "2.1.0",
+        "$schema": "https://json.schemastore.org/sarif-2.1.0.json",
+        "runs": [],
+    }
+
+    for path in paths:
+        sarif = load_sarif(path)
+        merged["runs"].extend(sarif.get("runs", []))
+
+    return merged
+
+
+def diff_findings(
+    baseline: list[Finding], current: list[Finding]
+) -> tuple[list[Finding], list[Finding], list[Finding]]:
+    """
+    Compare two sets of findings.
+
+    Returns:
+        - new: findings in current but not baseline
+        - fixed: findings in baseline but not current
+        - unchanged: findings in both
+    """
+    baseline_fps = {f.fingerprint or compute_fingerprint(f.raw) for f in baseline}
+    current_fps = {f.fingerprint or compute_fingerprint(f.raw) for f in current}
+
+    new = [f for f in current if (f.fingerprint or compute_fingerprint(f.raw)) not in baseline_fps]
+    fixed = [
+        f for f in baseline if (f.fingerprint or compute_fingerprint(f.raw)) not in current_fps
+    ]
+    unchanged = [
+        f for f in current if (f.fingerprint or compute_fingerprint(f.raw)) in baseline_fps
+    ]
+
+    return new, fixed, unchanged
+
+
+def get_rules(sarif: dict) -> dict[str, dict]:
+    """Extract rule definitions from SARIF file."""
+    rules = {}
+    for run in sarif.get("runs", []):
+        for rule in safe_get(run, "tool", "driver", "rules", default=[]):
+            rules[rule.get("id", "")] = rule
+    return rules
+
+
+def to_csv_rows(findings: list[Finding]) -> list[list[str]]:
+    """Convert findings to CSV-ready rows."""
+    rows = [["rule_id", "level", "file", "line", "message"]]
+    for f in findings:
+        rows.append(
+            [
+                f.rule_id,
+                f.level,
+                f.file_path or "",
+                str(f.start_line or ""),
+                f.message.replace("\n", " ")[:200],
+            ]
+        )
+    return rows
+
+
+def summary(findings: list[Finding]) -> dict:
+    """Generate summary statistics for findings."""
+    return {
+        "total": len(findings),
+        "by_level": count_by_level(findings),
+        "by_rule": count_by_rule(findings),
+        "files_affected": len(set(f.file_path for f in findings if f.file_path)),
+        "rules_triggered": len(set(f.rule_id for f in findings)),
+    }
+
+
+# Example usage
+if __name__ == "__main__":
+    import sys
+
+    if len(sys.argv) < 2:
+        print("Usage: python sarif_helpers.py <sarif_file>")
+        sys.exit(1)
+
+    sarif = load_sarif(sys.argv[1])
+
+    if not validate_version(sarif):
+        print("Warning: SARIF version is not 2.1.0")
+
+    findings = extract_findings(sarif)
+    findings = sort_by_severity(findings)
+
+    print("\nSummary:")
+    stats = summary(findings)
+    print(f"  Total findings: {stats['total']}")
+    print(f"  Files affected: {stats['files_affected']}")
+    print(f"  Rules triggered: {stats['rules_triggered']}")
+    print("\nBy severity:")
+    for level, count in stats["by_level"].items():
+        print(f"  {level}: {count}")
+
+    print("\nTop 5 rules:")
+    for rule, count in sorted(stats["by_rule"].items(), key=lambda x: -x[1])[:5]:
+        print(f"  {rule}: {count}")

package/skills/security-threat-model/LICENSE.txt

@@ -0,0 +1,201 @@
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package/skills/security-threat-model/SKILL.md

@@ -0,0 +1,81 @@
+---
+name: "security-threat-model"
+description: "Repository-grounded threat modeling that enumerates trust boundaries, assets, attacker capabilities, abuse paths, and mitigations, and writes a concise Markdown threat model. Trigger only when the user explicitly asks to threat model a codebase or path, enumerate threats/abuse paths, or perform AppSec threat modeling. Do not trigger for general architecture summaries, code review, or non-security design work."
+---
+
+# Threat Model Source Code Repo
+
+Deliver an actionable AppSec-grade threat model that is specific to the repository or a project path, not a generic checklist. Anchor every architectural claim to evidence in the repo and keep assumptions explicit. Prioritizing realistic attacker goals and concrete impacts over generic checklists.
+
+## Quick start
+
+1) Collect (or infer) inputs:
+- Repo root path and any in-scope paths.
+- Intended usage, deployment model, internet exposure, and auth expectations (if known).
+- Any existing repository summary or architecture spec.
+- Use prompts in `references/prompt-template.md` to generate a repository summary.
+- Follow the required output contract in `references/prompt-template.md`. Use it verbatim when possible.
+
+## Workflow
+
+### 1) Scope and extract the system model
+- Identify primary components, data stores, and external integrations from the repo summary.
+- Identify how the system runs (server, CLI, library, worker) and its entrypoints.
+- Separate runtime behavior from CI/build/dev tooling and from tests/examples.
+- Map the in-scope locations to those components and exclude out-of-scope items explicitly.
+- Do not claim components, flows, or controls without evidence.
+
+### 2) Derive boundaries, assets, and entry points
+- Enumerate trust boundaries as concrete edges between components, noting protocol, auth, encryption, validation, and rate limiting.
+- List assets that drive risk (data, credentials, models, config, compute resources, audit logs).
+- Identify entry points (endpoints, upload surfaces, parsers/decoders, job triggers, admin tooling, logging/error sinks).
+
+### 3) Calibrate assets and attacker capabilities
+- List the assets that drive risk (credentials, PII, integrity-critical state, availability-critical components, build artifacts).
+- Describe realistic attacker capabilities based on exposure and intended usage.
+- Explicitly note non-capabilities to avoid inflated severity.
+
+
+### 4) Enumerate threats as abuse paths
+- Prefer attacker goals that map to assets and boundaries (exfiltration, privilege escalation, integrity compromise, denial of service).
+- Classify each threat and tie it to impacted assets.
+- Keep the number of threats small but high quality.
+
+### 5) Prioritize with explicit likelihood and impact reasoning
+- Use qualitative likelihood and impact (low/medium/high) with short justifications.
+- Set overall priority (critical/high/medium/low) using likelihood x impact, adjusted for existing controls.
+- State which assumptions most influence the ranking.
+
+### 6) Validate service context and assumptions with the user
+- Summarize key assumptions that materially affect threat ranking or scope, then ask the user to confirm or correct them.
+- Ask 1–3 targeted questions to resolve missing context (service owner and environment, scale/users, deployment model, authn/authz, internet exposure, data sensitivity, multi-tenancy).
+- Pause and wait for user feedback before producing the final report.
+- If the user declines or can’t answer, state which assumptions remain and how they influence priority.
+
+### 7) Recommend mitigations and focus paths
+- Distinguish existing mitigations (with evidence) from recommended mitigations.
+- Tie mitigations to concrete locations (component, boundary, or entry point) and control types (authZ checks, input validation, schema enforcement, sandboxing, rate limits, secrets isolation, audit logging).
+- Prefer specific implementation hints over generic advice (e.g., "enforce schema at gateway for upload payloads" vs "validate inputs").
+- Base recommendations on validated user context; if assumptions remain unresolved, mark recommendations as conditional.
+
+### 8) Run a quality check before finalizing
+- Confirm all discovered entrypoints are covered.
+- Confirm each trust boundary is represented in threats.
+- Confirm runtime vs CI/dev separation.
+- Confirm user clarifications (or explicit non-responses) are reflected.
+- Confirm assumptions and open questions are explicit.
+- Confirm that the format of the report matches closely the required output format defined in prompt template: `references/prompt-template.md`
+- Write the final Markdown to a file named `<repo-or-dir-name>-threat-model.md` (use the basename of the repo root, or the in-scope directory if you were asked to model a subpath).
+
+
+## Risk prioritization guidance (illustrative, not exhaustive)
+- High: pre-auth RCE, auth bypass, cross-tenant access, sensitive data exfiltration, key or token theft, model or config integrity compromise, sandbox escape.
+- Medium: targeted DoS of critical components, partial data exposure, rate-limit bypass with measurable impact, log/metrics poisoning that affects detection.
+- Low: low-sensitivity info leaks, noisy DoS with easy mitigation, issues requiring unlikely preconditions.
+
+## References
+
+- Output contract and full prompt template: `references/prompt-template.md`
+- Optional controls/asset list: `references/security-controls-and-assets.md`
+
+Only load the reference files you need. Keep the final result concise, grounded, and reviewable.

package/skills/security-threat-model/agents/openai.yaml

@@ -0,0 +1,4 @@
+interface:
+  display_name: "Security Threat Model"
+  short_description: "Repo-grounded threat modeling and abuse-path analysis"
+  default_prompt: "Create a repository-grounded threat model for this codebase with prioritized abuse paths and mitigations."