@vibe-agent-toolkit/resources 0.1.37 → 0.1.39-rc.1

package/dist/link-validator.js

@@ -14,9 +14,24 @@
  * - Ignored files CAN link to non-ignored files (no error)
  * - External resources (outside project) skip git-ignore checks
  */
+import fs from 'node:fs/promises';
 import path from 'node:path';
-import { isGitIgnored, verifyCaseSensitiveFilename, safePath, } from '@vibe-agent-toolkit/utils';
-import { isWithinProject, resolveLocalHref, splitHrefAnchor } from './utils.js';
+import { createRegistryIssue } from '@vibe-agent-toolkit/agent-schema';
+import { isGitIgnored, verifyCaseSensitiveFilename, } from '@vibe-agent-toolkit/utils';
+import { isWithinProject, issueLocation, resolveLocalHref } from './utils.js';
+/**
+ * Build the common `createRegistryIssue` extras for a link issue: relative
+ * location, the problematic href, the line (only when defined — required for
+ * exactOptionalPropertyTypes), and an optional suggestion.
+ */
+function linkExtras(link, sourceFilePath, projectRoot, suggestion) {
+    return {
+        location: issueLocation(sourceFilePath, projectRoot),
+        link: link.href,
+        ...(link.line !== undefined && { line: link.line }),
+        ...(suggestion !== undefined && { suggestion }),
+    };
+}
 /**
  * Validate a single link in a markdown resource.
  *
@@ -42,7 +57,7 @@ export async function validateLink(link, sourceFilePath, headingsByFile, options
         case 'local_file':
             return await validateLocalFileLink(link, sourceFilePath, headingsByFile, options);
         case 'anchor':
-            return await validateAnchorLink(link, sourceFilePath, headingsByFile);
+            return await validateAnchorLink(link, sourceFilePath, headingsByFile, options?.projectRoot);
         case 'external':
             // External URLs are not validated - don't report them
             return null;
@@ -50,13 +65,7 @@ export async function validateLink(link, sourceFilePath, headingsByFile, options
             // Email links are valid by default
             return null;
         case 'unknown':
-            return {
-                resourcePath: sourceFilePath,
-                line: link.line,
-                type: 'unknown_link',
-                link: link.href,
-                message: 'Unknown link type',
-            };
+            return createRegistryIssue('LINK_UNKNOWN', 'Unknown link type', linkExtras(link, sourceFilePath, options?.projectRoot));
         default: {
             // TypeScript exhaustiveness check
             const _exhaustive = link.type;
@@ -64,78 +73,83 @@ export async function validateLink(link, sourceFilePath, headingsByFile, options
         }
     }
 }
+/**
+ * Convert a resolution failure kind to a broken_file ValidationIssue. Returns
+ * null for `resolved` (caller continues) and `anchor_only` (defensive no-op —
+ * the parser classifies anchor-only hrefs as 'anchor', not 'local_file').
+ */
+export function resolutionFailureIssue(resolved, link, sourceFilePath, projectRoot) {
+    if (resolved.kind === 'absolute_no_root') {
+        return createRegistryIssue('LINK_BROKEN_FILE', `Absolute-path link "${link.href}" requires a configured projectRoot; ` +
+            `none was provided. Configure vibe-agent-toolkit.config.yaml or run ` +
+            `from within a git repository.`, linkExtras(link, sourceFilePath, projectRoot, 'Rewrite as a source-relative link, or run from a directory with a config or git ancestor.'));
+    }
+    if (resolved.kind === 'absolute_escapes_root') {
+        return createRegistryIssue('LINK_BROKEN_FILE', `Absolute-path link "${link.href}" escapes the project root via path traversal.`, linkExtras(link, sourceFilePath, projectRoot, ''));
+    }
+    return null;
+}
+/**
+ * Convert a non-existent file result into a broken_file ValidationIssue.
+ * Returns null when the file exists.
+ */
+export function fileExistenceIssue(fileResult, link, sourceFilePath, projectRoot) {
+    if (fileResult.exists)
+        return null;
+    if (fileResult.actualName) {
+        const expectedName = path.basename(fileResult.resolvedPath);
+        return createRegistryIssue('LINK_BROKEN_FILE', `File found but case mismatch: expected "${expectedName}" but found "${fileResult.actualName}". This will fail on case-sensitive filesystems (Linux). Update the link to match the actual filename.`, linkExtras(link, sourceFilePath, projectRoot, `Use "${fileResult.actualName}" instead of "${expectedName}"`));
+    }
+    return createRegistryIssue('LINK_BROKEN_FILE', `File not found: ${fileResult.resolvedPath}`, linkExtras(link, sourceFilePath, projectRoot, ''));
+}
+/**
+ * Check git-ignore safety: a non-ignored source file must not link to a
+ * gitignored target. Returns a ValidationIssue when this rule is violated,
+ * null otherwise (including when checks are disabled or out of scope).
+ */
+export function gitIgnoreSafetyIssue(link, sourceFilePath, resolvedTarget, options) {
+    if (options?.skipGitIgnoreCheck === true ||
+        options?.projectRoot === undefined ||
+        !isWithinProject(resolvedTarget, options.projectRoot)) {
+        return null;
+    }
+    // Prefer the O(1) active-set lookup on the shared GitTracker (no spawn).
+    // isIgnoredByActiveSet falls back internally to isIgnored for paths outside
+    // the project root, so this is safe for the rare out-of-project case.
+    // When no tracker is threaded in, fall back to isGitIgnored (one-off spawn).
+    const sourceIsIgnored = options.gitTracker
+        ? options.gitTracker.isIgnoredByActiveSet(sourceFilePath)
+        : isGitIgnored(sourceFilePath, options.projectRoot);
+    const targetIsIgnored = options.gitTracker
+        ? options.gitTracker.isIgnoredByActiveSet(resolvedTarget)
+        : isGitIgnored(resolvedTarget, options.projectRoot);
+    if (sourceIsIgnored || !targetIsIgnored)
+        return null;
+    return createRegistryIssue('LINK_TO_GITIGNORED', `Non-ignored file links to gitignored file: ${resolvedTarget}. Gitignored files are local-only and will not exist in the repository. Remove this link or unignore the target file.`, linkExtras(link, sourceFilePath, options.projectRoot, ''));
+}
 /**
  * Validate a local file link (with optional anchor).
  */
 async function validateLocalFileLink(link, sourceFilePath, headingsByFile, options) {
-    // Extract file path and anchor from href
-    const [filePath, anchor] = splitHrefAnchor(link.href);
-    // Validate the file exists
-    const fileResult = await validateLocalFile(filePath, sourceFilePath);
-    if (!fileResult.exists) {
-        // Check if it's a case mismatch
-        if (fileResult.actualName) {
-            const expectedName = path.basename(fileResult.resolvedPath);
-            return {
-                resourcePath: sourceFilePath,
-                line: link.line,
-                type: 'broken_file',
-                link: link.href,
-                message: `File found but case mismatch: expected "${expectedName}" but found "${fileResult.actualName}". This will fail on case-sensitive filesystems (Linux). Update the link to match the actual filename.`,
-                suggestion: `Use "${fileResult.actualName}" instead of "${expectedName}"`,
-            };
-        }
-        return {
-            resourcePath: sourceFilePath,
-            line: link.line,
-            type: 'broken_file',
-            link: link.href,
-            message: `File not found: ${fileResult.resolvedPath}`,
-            suggestion: '',
-        };
+    const resolved = resolveLocalHref(link.href, sourceFilePath, options?.projectRoot);
+    if (resolved.kind !== 'resolved') {
+        // anchor_only → null no-op; absolute_no_root / absolute_escapes_root → broken_file.
+        return resolutionFailureIssue(resolved, link, sourceFilePath, options?.projectRoot);
     }
-    // Check git-ignore safety (Phase 3)
-    // Only check if:
-    // 1. skipGitIgnoreCheck is NOT true
-    // 2. projectRoot is provided
-    // 3. target is within project (skip for external resources)
-    if (options?.skipGitIgnoreCheck !== true &&
-        options?.projectRoot !== undefined &&
-        isWithinProject(fileResult.resolvedPath, options.projectRoot)) {
-        // Prefer the O(1) active-set lookup on the shared GitTracker (no spawn).
-        // isIgnoredByActiveSet falls back internally to isIgnored for paths outside
-        // the project root, so this is safe for the rare out-of-project case.
-        // When no tracker is threaded in, fall back to isGitIgnored (one-off spawn).
-        const sourceIsIgnored = options.gitTracker
-            ? options.gitTracker.isIgnoredByActiveSet(sourceFilePath)
-            : isGitIgnored(sourceFilePath, options.projectRoot);
-        const targetIsIgnored = options.gitTracker
-            ? options.gitTracker.isIgnoredByActiveSet(fileResult.resolvedPath)
-            : isGitIgnored(fileResult.resolvedPath, options.projectRoot);
-        // Error ONLY if: source is NOT ignored AND target IS ignored
-        if (!sourceIsIgnored && targetIsIgnored) {
-            return {
-                resourcePath: sourceFilePath,
-                line: link.line,
-                type: 'link_to_gitignored',
-                link: link.href,
-                message: `Non-ignored file links to gitignored file: ${fileResult.resolvedPath}. Gitignored files are local-only and will not exist in the repository. Remove this link or unignore the target file.`,
-                suggestion: '',
-            };
-        }
+    const fileResult = await validateResolvedFile(resolved.resolvedPath);
+    const notFound = fileExistenceIssue(fileResult, link, sourceFilePath, options?.projectRoot);
+    if (notFound)
+        return notFound;
+    if (fileResult.isDirectory) {
+        return createRegistryIssue('LINK_BROKEN_FILE', `Link target is a directory: ${fileResult.resolvedPath}`, linkExtras(link, sourceFilePath, options?.projectRoot, 'Link to a file inside the directory (e.g., README.md or index.md), or fix the link to point at the intended file.'));
     }
-    // If there's an anchor, validate it too
-    if (anchor) {
-        const anchorValid = await validateAnchor(anchor, fileResult.resolvedPath, headingsByFile);
+    const gitIgnoreIssue = gitIgnoreSafetyIssue(link, sourceFilePath, fileResult.resolvedPath, options);
+    if (gitIgnoreIssue)
+        return gitIgnoreIssue;
+    if (resolved.anchor) {
+        const anchorValid = await validateAnchor(resolved.anchor, fileResult.resolvedPath, headingsByFile);
         if (!anchorValid) {
-            return {
-                resourcePath: sourceFilePath,
-                line: link.line,
-                type: 'broken_anchor',
-                link: link.href,
-                message: `Anchor not found: #${anchor} in ${fileResult.resolvedPath}`,
-                suggestion: '',
-            };
+            return createRegistryIssue('LINK_BROKEN_ANCHOR', `Anchor not found: #${resolved.anchor} in ${fileResult.resolvedPath}`, linkExtras(link, sourceFilePath, options?.projectRoot, ''));
         }
     }
     return null;
@@ -143,50 +157,39 @@ async function validateLocalFileLink(link, sourceFilePath, headingsByFile, optio
 /**
  * Validate an anchor link (within current file).
  */
-async function validateAnchorLink(link, sourceFilePath, headingsByFile) {
+async function validateAnchorLink(link, sourceFilePath, headingsByFile, projectRoot) {
     // Extract anchor (strip leading #)
     const anchor = link.href.startsWith('#') ? link.href.slice(1) : link.href;
     // Validate anchor exists in current file
     const isValid = await validateAnchor(anchor, sourceFilePath, headingsByFile);
     if (!isValid) {
-        return {
-            resourcePath: sourceFilePath,
-            line: link.line,
-            type: 'broken_anchor',
-            link: link.href,
-            message: `Anchor not found: ${link.href}`,
-            suggestion: '',
-        };
+        return createRegistryIssue('LINK_BROKEN_ANCHOR', `Anchor not found: ${link.href}`, linkExtras(link, sourceFilePath, projectRoot, ''));
     }
     return null;
 }
 /**
- * Validate that a local file exists with the correct case.
- *
- * @param href - The href to the file (relative or absolute)
- * @param sourceFilePath - Absolute path to the source file
- * @returns Object with exists flag, resolved absolute path, and optional case mismatch info
+ * Verify that the resolved filesystem path exists with the correct case.
  *
- * @example
- * ```typescript
- * const result = await validateLocalFile('./docs/guide.md', '/project/README.md');
- * if (result.exists) {
- *   console.log('File exists at:', result.resolvedPath);
- * } else if (result.actualName) {
- *   console.log('Case mismatch:', result.actualName);
- * }
- * ```
+ * @param resolvedPath - Absolute filesystem path produced by {@link resolveLocalHref}.
+ * @returns Object with exists flag, the path, and optional case-mismatch info.
  */
-async function validateLocalFile(href, sourceFilePath) {
-    // Resolve href to filesystem path (decode percent-encoding, resolve relative to source)
-    const resolved = resolveLocalHref(href, sourceFilePath);
-    const resolvedPath = resolved?.resolvedPath ?? safePath.resolve(path.dirname(sourceFilePath), href);
-    // Check if file exists with correct case
+async function validateResolvedFile(resolvedPath) {
     const verification = await verifyCaseSensitiveFilename(resolvedPath);
-    // Build result with optional actualName (only include if present)
+    let isDirectory = false;
+    if (verification.exists) {
+        try {
+            // eslint-disable-next-line security/detect-non-literal-fs-filename -- resolvedPath validated by verifyCaseSensitiveFilename
+            const stats = await fs.stat(resolvedPath);
+            isDirectory = stats.isDirectory();
+        }
+        catch {
+            // Stat failed after verifyCaseSensitiveFilename said exists — treat as file.
+        }
+    }
     const result = {
         exists: verification.exists,
         resolvedPath,
+        isDirectory,
     };
     if (verification.actualName) {
         result.actualName = verification.actualName;

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package/dist/multi-schema-validator.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"multi-schema-validator.d.ts","sourceRoot":"","sources":["../src/multi-schema-validator.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AASH,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,6BAA6B,CAAC;AAClE,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,gCAAgC,CAAC;AACtE,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,sBAAsB,CAAC;AAuB5D;;;;;;;;;;;;GAYG;AACH,wBAAsB,8BAA8B,CAClD,WAAW,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,GAAG,SAAS,EAChD,OAAO,EAAE,eAAe,EAAE,EAC1B,YAAY,EAAE,MAAM,EACpB,IAAI,EAAE,cAAc,EACpB,WAAW,CAAC,EAAE,MAAM,GACnB,OAAO,CAAC,eAAe,EAAE,CAAC,CA2C5B;AAED;;;;;GAKG;AACH,wBAAgB,eAAe,CAAC,OAAO,EAAE,eAAe,EAAE,GAAG,OAAO,CAEnE;AAED;;;;;GAKG;AACH,wBAAgB,kBAAkB,CAAC,OAAO,EAAE,eAAe,EAAE,GAAG,eAAe,EAAE,CAQhF"}

package/dist/multi-schema-validator.js

@@ -10,8 +10,10 @@
  */
 import { promises as fs } from 'node:fs';
 import path from 'node:path';
+import { createRegistryIssue } from '@vibe-agent-toolkit/agent-schema';
 import { safePath } from '@vibe-agent-toolkit/utils';
 import { validateFrontmatter } from './frontmatter-validator.js';
+import { issueLocation } from './utils.js';
 /**
  * Load a JSON Schema from a file path
  *
@@ -49,7 +51,7 @@ export async function validateFrontmatterMultiSchema(frontmatter, schemas, resou
             // Load schema
             const schema = await loadSchema(schemaRef.schema, projectRoot);
             // Validate frontmatter
-            const issues = validateFrontmatter(frontmatter, schema, resourcePath, mode);
+            const issues = validateFrontmatter(frontmatter, schema, resourcePath, mode, undefined, projectRoot);
             // Update schema reference with results
             const result = {
                 ...schemaRef,
@@ -69,13 +71,9 @@ export async function validateFrontmatterMultiSchema(frontmatter, schemas, resou
                 ...schemaRef,
                 applied: true,
                 valid: false,
-                errors: [{
-                        resourcePath,
-                        line: 1,
-                        type: 'frontmatter_schema_error',
-                        link: '',
-                        message: `Failed to load or validate schema ${schemaRef.schema}: ${message}`,
-                    }],
+                errors: [
+                    createRegistryIssue('FRONTMATTER_SCHEMA_ERROR', `Failed to load or validate schema ${schemaRef.schema}: ${message}`, { location: issueLocation(resourcePath, projectRoot), line: 1 }),
+                ],
             });
         }
     }

package/dist/multi-schema-validator.js.map

@@ -1 +1 @@
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+{"version":3,"file":"multi-schema-validator.js","sourceRoot":"","sources":["../src/multi-schema-validator.ts"],"names":[],"mappings":"AAAA;;;;;;;;;GASG;AAEH,OAAO,EAAE,QAAQ,IAAI,EAAE,EAAE,MAAM,SAAS,CAAC;AACzC,OAAO,IAAI,MAAM,WAAW,CAAC;AAE7B,OAAO,EAAE,mBAAmB,EAAE,MAAM,kCAAkC,CAAC;AACvE,OAAO,EAAE,QAAQ,EAAE,MAAM,2BAA2B,CAAC;AAErD,OAAO,EAAE,mBAAmB,EAAE,MAAM,4BAA4B,CAAC;AAIjE,OAAO,EAAE,aAAa,EAAE,MAAM,YAAY,CAAC;AAE3C;;;;;;GAMG;AACH,KAAK,UAAU,UAAU,CAAC,UAAkB,EAAE,WAAoB;IAChE,IAAI,YAAY,GAAG,UAAU,CAAC;IAE9B,6DAA6D;IAC7D,IAAI,CAAC,IAAI,CAAC,UAAU,CAAC,UAAU,CAAC,IAAI,WAAW,EAAE,CAAC;QAChD,YAAY,GAAG,QAAQ,CAAC,IAAI,CAAC,WAAW,EAAE,UAAU,CAAC,CAAC;IACxD,CAAC;IAED,mEAAmE;IACnE,MAAM,OAAO,GAAG,MAAM,EAAE,CAAC,QAAQ,CAAC,YAAY,EAAE,OAAO,CAAC,CAAC;IACzD,OAAO,IAAI,CAAC,KAAK,CAAC,OAAO,CAAW,CAAC;AACvC,CAAC;AAED;;;;;;;;;;;;GAYG;AACH,MAAM,CAAC,KAAK,UAAU,8BAA8B,CAClD,WAAgD,EAChD,OAA0B,EAC1B,YAAoB,EACpB,IAAoB,EACpB,WAAoB;IAEpB,MAAM,OAAO,GAAsB,EAAE,CAAC;IAEtC,KAAK,MAAM,SAAS,IAAI,OAAO,EAAE,CAAC;QAChC,IAAI,CAAC;YACH,cAAc;YACd,MAAM,MAAM,GAAG,MAAM,UAAU,CAAC,SAAS,CAAC,MAAM,EAAE,WAAW,CAAC,CAAC;YAE/D,uBAAuB;YACvB,MAAM,MAAM,GAAG,mBAAmB,CAAC,WAAW,EAAE,MAAM,EAAE,YAAY,EAAE,IAAI,EAAE,SAAS,EAAE,WAAW,CAAC,CAAC;YAEpG,uCAAuC;YACvC,MAAM,MAAM,GAAoB;gBAC9B,GAAG,SAAS;gBACZ,OAAO,EAAE,IAAI;gBACb,KAAK,EAAE,MAAM,CAAC,MAAM,KAAK,CAAC;aAC3B,CAAC;YAEF,gEAAgE;YAChE,IAAI,MAAM,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;gBACtB,MAAM,CAAC,MAAM,GAAG,MAAM,CAAC;YACzB,CAAC;YAED,OAAO,CAAC,IAAI,CAAC,MAAM,CAAC,CAAC;QACvB,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,sCAAsC;YACtC,MAAM,OAAO,GAAG,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;YACvE,OAAO,CAAC,IAAI,CAAC;gBACX,GAAG,SAAS;gBACZ,OAAO,EAAE,IAAI;gBACb,KAAK,EAAE,KAAK;gBACZ,MAAM,EAAE;oBACN,mBAAmB,CACjB,0BAA0B,EAC1B,qCAAqC,SAAS,CAAC,MAAM,KAAK,OAAO,EAAE,EACnE,EAAE,QAAQ,EAAE,aAAa,CAAC,YAAY,EAAE,WAAW,CAAC,EAAE,IAAI,EAAE,CAAC,EAAE,CAChE;iBACF;aACF,CAAC,CAAC;QACL,CAAC;IACH,CAAC;IAED,OAAO,OAAO,CAAC;AACjB,CAAC;AAED;;;;;GAKG;AACH,MAAM,UAAU,eAAe,CAAC,OAA0B;IACxD,OAAO,OAAO,CAAC,IAAI,CAAC,CAAC,GAAG,EAAE,EAAE,CAAC,GAAG,CAAC,KAAK,KAAK,KAAK,CAAC,CAAC;AACpD,CAAC;AAED;;;;;GAKG;AACH,MAAM,UAAU,kBAAkB,CAAC,OAA0B;IAC3D,MAAM,SAAS,GAAsB,EAAE,CAAC;IACxC,KAAK,MAAM,GAAG,IAAI,OAAO,EAAE,CAAC;QAC1B,IAAI,GAAG,CAAC,MAAM,EAAE,CAAC;YACf,SAAS,CAAC,IAAI,CAAC,GAAG,GAAG,CAAC,MAAM,CAAC,CAAC;QAChC,CAAC;IACH,CAAC;IACD,OAAO,SAAS,CAAC;AACnB,CAAC"}

package/dist/resource-registry.d.ts

@@ -7,6 +7,7 @@
  * - Link resolution (setting resolvedId for local_file links)
  * - Query capabilities (by path, ID, or glob pattern)
  */
+import { type ValidationConfig } from '@vibe-agent-toolkit/agent-schema';
 import { type GitTracker } from '@vibe-agent-toolkit/utils';
 import type { ResourceCollectionInterface } from './resource-collection-interface.js';
 import type { SHA256 } from './schemas/checksum.js';
@@ -53,6 +54,13 @@ export interface ValidateOptions {
     checkExternalUrls?: boolean;
     /** Disable cache for external URL checks (default: false) */
     noCache?: boolean;
+    /**
+     * Validation framework config (severity overrides + per-code allow entries).
+     * Applied INSIDE validate() via runValidationFramework — the library, not the
+     * CLI, resolves severity and drops ignored issues. Defaults to `{}` (no
+     * overrides: every issue keeps its registry default severity).
+     */
+    validationConfig?: ValidationConfig;
 }
 /**
  * Statistics about resources in the registry.
@@ -331,10 +339,10 @@ export declare class ResourceRegistry implements ResourceCollectionInterface {
      */
     private convertValidationResultsToIssues;
     /**
-     * Determine issue type based on validation error.
+     * Determine the registry issue code based on the external-URL validation error.
      * @private
      */
-    private determineExternalUrlIssueType;
+    private determineExternalUrlIssueCode;
     /**
      * Resolve links between resources in the registry.
      *

package/dist/resource-registry.d.ts.map

@@ -1 +1 @@
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package/dist/resource-registry.js

@@ -8,6 +8,7 @@
  * - Query capabilities (by path, ID, or glob pattern)
  */
 import path from 'node:path';
+import { createRegistryIssue, runValidationFramework } from '@vibe-agent-toolkit/agent-schema';
 import { crawlDirectory, normalizedTmpdir, resolveAssetReference, safePath, toForwardSlash } from '@vibe-agent-toolkit/utils';
 import { calculateChecksum } from './checksum.js';
 import { getCollectionsForFile } from './collection-matcher.js';
@@ -16,7 +17,7 @@ import { validateFrontmatterLinks, } from './frontmatter-link-validator.js';
 import { validateFrontmatter } from './frontmatter-validator.js';
 import { parseMarkdown } from './link-parser.js';
 import { validateLink } from './link-validator.js';
-import { matchesGlobPattern, splitHrefAnchor } from './utils.js';
+import { issueLocation, matchesGlobPattern, splitHrefAnchor } from './utils.js';
 /**
  * Resource registry for managing collections of markdown resources.
  *
@@ -284,13 +285,7 @@ export class ResourceRegistry {
         const issues = [];
         for (const resource of this.resourcesByPath.values()) {
             if (resource.frontmatterError) {
-                issues.push({
-                    resourcePath: resource.filePath,
-                    line: 1,
-                    type: 'frontmatter_invalid_yaml',
-                    link: '',
-                    message: `Invalid YAML syntax in frontmatter: ${resource.frontmatterError}`,
-                });
+                issues.push(createRegistryIssue('FRONTMATTER_INVALID_YAML', `Invalid YAML syntax in frontmatter: ${resource.frontmatterError}`, { location: issueLocation(resource.filePath, this.baseDir), line: 1 }));
             }
         }
         return issues;
@@ -326,7 +321,7 @@ export class ResourceRegistry {
     validateAllFrontmatter(schema, mode = 'strict') {
         const issues = [];
         for (const resource of this.resourcesByPath.values()) {
-            const frontmatterIssues = validateFrontmatter(resource.frontmatter, schema, resource.filePath, mode);
+            const frontmatterIssues = validateFrontmatter(resource.frontmatter, schema, resource.filePath, mode, undefined, this.baseDir);
             issues.push(...frontmatterIssues);
         }
         return issues;
@@ -388,7 +383,7 @@ export class ResourceRegistry {
             // Determine validation mode (default to permissive)
             const mode = validation.mode ?? 'permissive';
             // Validate frontmatter against JSON Schema
-            const issues = validateFrontmatter(resource.frontmatter, schema, resource.filePath, mode, schemaPath);
+            const issues = validateFrontmatter(resource.frontmatter, schema, resource.filePath, mode, schemaPath, this.baseDir);
             // New: walk URI-family frontmatter values. Default-on; explicit `false` disables.
             if (validation.checkFrontmatterLinks !== false && resource.frontmatter) {
                 const linkOptions = this.baseDir === undefined
@@ -410,13 +405,9 @@ export class ResourceRegistry {
         catch (error) {
             // Handle missing or invalid schema files gracefully
             const errorMessage = error instanceof Error ? error.message : String(error);
-            return [{
-                    resourcePath: resource.filePath,
-                    line: 1,
-                    type: 'frontmatter_schema_error',
-                    link: '',
-                    message: `Failed to load or parse frontmatter schema '${validation.frontmatterSchema}': ${errorMessage}`,
-                }];
+            return [
+                createRegistryIssue('FRONTMATTER_SCHEMA_ERROR', `Failed to load or parse frontmatter schema '${validation.frontmatterSchema}': ${errorMessage}`, { location: issueLocation(resource.filePath, this.baseDir), line: 1 }),
+            ];
         }
     }
     /**
@@ -476,8 +467,11 @@ export class ResourceRegistry {
             const externalUrlIssues = await this.validateExternalUrls(options.noCache ?? false);
             issues.push(...externalUrlIssues);
         }
-        // Count issues (all are errors now)
-        const errorCount = issues.length;
+        // Resolve severity + apply allow-filter INSIDE the library (not the CLI).
+        // `emitted` = post-allow-filter, severity-resolved, with `ignore`d dropped.
+        const framework = runValidationFramework(issues, options?.validationConfig ?? {});
+        const emitted = framework.emitted;
+        const errorCount = emitted.length;
         // Count links by type
         const linksByType = {};
         for (const resource of this.resourcesByPath.values()) {
@@ -490,9 +484,10 @@ export class ResourceRegistry {
             totalResources: this.resourcesByPath.size,
             totalLinks: [...this.resourcesByPath.values()].reduce((sum, r) => sum + r.links.length, 0),
             linksByType,
-            issues,
+            issues: emitted,
             errorCount,
             passed: errorCount === 0,
+            hasErrors: framework.hasErrors,
             durationMs,
             timestamp: new Date(),
         };
@@ -577,33 +572,31 @@ export class ResourceRegistry {
             if (!locations) {
                 continue;
             }
-            const issueType = this.determineExternalUrlIssueType(result.statusCode, result.error);
+            const issueCode = this.determineExternalUrlIssueCode(result.statusCode, result.error);
             const errorMessage = result.error ?? `HTTP ${result.statusCode}`;
             for (const location of locations) {
-                issues.push({
-                    resourcePath: location.resourcePath,
-                    line: location.line,
-                    type: issueType,
+                issues.push(createRegistryIssue(issueCode, `External URL failed: ${errorMessage}`, {
+                    location: issueLocation(location.resourcePath, this.baseDir),
                     link: result.url,
-                    message: `External URL failed: ${errorMessage}`,
-                });
+                    ...(location.line !== undefined && { line: location.line }),
+                }));
             }
         }
         return issues;
     }
     /**
-     * Determine issue type based on validation error.
+     * Determine the registry issue code based on the external-URL validation error.
      * @private
      */
-    determineExternalUrlIssueType(statusCode, error) {
+    determineExternalUrlIssueCode(statusCode, error) {
         if (statusCode === 0) {
             const errorLower = error?.toString().toLowerCase();
             if (errorLower?.includes('timeout')) {
-                return 'external_url_timeout';
+                return 'EXTERNAL_URL_TIMEOUT';
             }
-            return 'external_url_error';
+            return 'EXTERNAL_URL_ERROR';
         }
-        return 'external_url_dead';
+        return 'EXTERNAL_URL_DEAD';
     }
     /**
      * Resolve links between resources in the registry.