@vibe-agent-toolkit/cli 0.2.0-rc.7 → 0.2.0-rc.9

package/dist/commands/verify.js

@@ -15,10 +15,9 @@
  * Both sets are config-gated, and both are announced on startup.
  */
 import { existsSync, statSync } from 'node:fs';
-import { basename } from 'node:path';
-import { computeTreeCopiedSkillLocations, detectPackagedAgentInstructionFiles, explicitFilesConfigDests, } from '@vibe-agent-toolkit/agent-skills';
+import { detectPackagedAgentInstructionFiles, explicitFilesConfigDests, indexPluginLocalSkills, } from '@vibe-agent-toolkit/agent-skills';
 import { calculateValidationStatus, countBySeverity, } from '@vibe-agent-toolkit/schema';
-import { safePath, toForwardSlash } from '@vibe-agent-toolkit/utils';
+import { isPathAbsentError, safePath, toForwardSlash } from '@vibe-agent-toolkit/utils';
 import { Command } from 'commander';
 import { handleCommandError } from '../utils/command-error.js';
 import { loadConfig } from '../utils/config-loader.js';
@@ -27,13 +26,13 @@ import { resolveIssueSeverity } from '../utils/issue-severity.js';
 import { writeYamlOutput } from '../utils/output.js';
 import { requireProjectRoot } from '../utils/project-root-policy.js';
 import { nothingCheckedFinding, runIntegrityFinding } from '../utils/run-integrity.js';
-import { mergeSkillPackagingConfig } from '../utils/skill-packaging-config.js';
+import { isSkillPublished, mergeSkillPackagingConfig, pluginLocalSkillConfigEntry, publishScope } from '../utils/skill-packaging-config.js';
 import { runMarketplaceValidatePhase } from './claude/marketplace/validate.js';
 import { runConsistencyChecks, } from './consistency-check.js';
 import { addRetiredOnlyOption, aggregatePhaseStatus, applyPhaseSelection, createPhaseContext, decidePhaseSelection, exitCodeForPhases, rejectRetiredOnly, runPhase, } from './phase-utils.js';
 import { rejectPositionalArguments } from './positional-args.js';
 import { runResourcesValidatePhase } from './resources/validate.js';
-import { discoverSkillsFromConfig } from './skills/skill-discovery.js';
+import { discoverSkillsFromConfig, readPluginLocalSkillNames } from './skills/skill-discovery.js';
 import { runSkillsValidatePhase } from './skills/validate.js';
 /**
  * Measured full-run duration on the 90-skill / 1,041-document adopter, cited by
@@ -102,6 +101,15 @@ Output:
     a pass: a run that found none of the build (dist/ not built, or a
     skills.include glob that matched nothing) or only part of it (a bundle
     deleted, a skill added since the last build) is not a verdict on what ships.
+    A skill whose merged config says publish: false is IN-PLACE — never
+    bundled by 'vat build', so no pool bundle is expected for it (a stale one
+    in dist/skills is still inspected); bundlesInPlace counts them, and a run
+    whose every discovered skill is in place passes with nothing to inspect. A
+    plugin-local skill (a git-tracked skill dir under a plugin's skills/) is
+    never in place: it is expected in its plugin tree whatever publish says,
+    and never counted in bundlesInPlace. Declare
+    skills.defaults.publish: false for a project that builds with --only claude
+    and uses its other skills from the repo.
   Progress and validation errors → stderr (streamed live)
 
   By default each delegated phase reports a per-asset summary plus the assets
@@ -143,20 +151,25 @@ function filesOf(entry) {
     return entry.packaging.files ?? [];
 }
 /**
- * Whether `dir` is a directory — `false` for a file, for nothing, and for a
- * path the process cannot stat. All three are "no bundle here": a bundle is a
- * tree, and a regular FILE sitting where one should be passed `existsSync`,
- * was counted as built, and the packaged-content crawl then threw `Base path is
- * not a directory: /abs/…` out of the whole command — exit 2, no document, an
- * absolute path on stderr — where the missing-bundle lane names it at exit 1.
+ * Whether `dir` is a directory — `false` for a file and for nothing. Both are
+ * "no bundle here": a bundle is a tree, and a regular FILE sitting where one
+ * should be passed `existsSync`, was counted as built, and the packaged-content
+ * crawl then threw `Base path is not a directory: /abs/…` out of the whole
+ * command — exit 2, no document, an absolute path on stderr — where the
+ * missing-bundle lane names it at exit 1.
+ *
+ * A path the process cannot stat is NOT "no bundle here" and throws: reading a
+ * refused `dist/skills/x` as missing would name it under `missing` with a
+ * remedy ("run vat build") that cannot help.
  */
 function isDirectory(dir) {
     try {
-        // eslint-disable-next-line security/detect-non-literal-fs-filename -- outputDir is resolved from config, not user input
         return statSync(dir).isDirectory();
     }
-    catch {
-        return false;
+    catch (error) {
+        if (isPathAbsentError(error))
+            return false;
+        throw error;
     }
 }
 /**
@@ -221,6 +234,11 @@ function addCheckCandidate(outputs, seen, cwd, candidate, expected) {
  * crawls the whole project, `vat verify` already needs the same list for its
  * consistency phase, and an optional parameter here would let a call site quietly
  * re-crawl (or, worse, skip discovery and reinstate the blindness above).
+ * `pluginLocal` is required for the same reason: listing plugin-local skills crawls
+ * every plugin, and `vat verify` builds that index ONCE for all three in-process phases.
+ * `pluginLocalNames` — every location's declared name, read once per run by
+ * `readPluginLocalSkillNames` — is required too: without it a plugin-local skill's config
+ * would be looked up by something other than the name the plugin build packaged it under.
  *
  * The merge goes through {@link mergeSkillPackagingConfig} — the ONE helper every
  * lane uses — so `vat verify` and `vat build` cannot disagree about a skill's
@@ -228,46 +246,55 @@ function addCheckCandidate(outputs, seen, cwd, candidate, expected) {
  * unread is what made `severity.PACKAGED_AGENT_INSTRUCTION_FILE: ignore` a no-op in
  * this command.
  */
-function collectBuiltSkillOutputs(cwd, discovered) {
-    const outputs = { built: [], expected: 0, missing: [] };
-    try {
-        const config = loadConfig(cwd);
-        if (!config)
-            return outputs;
-        const skillsConfig = config.skills;
-        const defaults = skillsConfig?.defaults;
-        // Dedup guard: key = `skillName\0outputDir`
-        const seen = new Set();
-        // --- Pool skills: candidate dir is dist/skills/<fsName> ---
-        // Expected only when discovered: `vat skills build` builds every discovered
-        // skill and nothing else (see BuiltSkillOutputs.expected).
-        const discoveredNames = new Set(discovered.map((skill) => skill.name));
-        const poolNames = new Set([...discoveredNames, ...Object.keys(skillsConfig?.config ?? {})]);
-        for (const skillName of poolNames) {
-            const perSkill = skillsConfig?.config?.[skillName];
-            const outputDir = safePath.resolve(cwd, 'dist', 'skills', skillNameToFsPath(skillName));
-            addCheckCandidate(outputs, seen, cwd, { skillName, outputDir, packaging: mergeSkillPackagingConfig(defaults, perSkill) }, discoveredNames.has(skillName));
-        }
-        // --- Tree-copy skills: candidate dirs are plugin output skill dirs ---
-        // Always expected: every location here is a plugin-local skill the claude
-        // build phase packages into the plugin tree.
-        for (const loc of computeTreeCopiedSkillLocations(config, cwd)) {
-            // Per-skill config is keyed by the skill's declared NAME. `skillDirPath` is a
-            // path (`group/nested-skill` for a nested skill), so try its trailing segment
-            // too — the spelling that matches for every skill whose dir is named after it.
-            const dirLeaf = basename(loc.skillDirPath);
-            const perSkill = (skillsConfig?.config?.[loc.skillDirPath] ?? skillsConfig?.config?.[dirLeaf]);
-            addCheckCandidate(outputs, seen, cwd, {
-                skillName: loc.skillDirPath,
-                outputDir: loc.skillOutputDir,
-                packaging: mergeSkillPackagingConfig(defaults, perSkill),
-            }, true);
-        }
+function collectBuiltSkillOutputs(cwd, discovered, pluginLocal, pluginLocalNames) {
+    const outputs = { built: [], expected: 0, inPlace: 0, missing: [] };
+    // No `try`, deliberately. The config was already loaded by the command (see
+    // `loadConfigTolerant`) and the in-process phases run only when it loaded, so
+    // `loadConfig` here answers from cache. The `catch { return outputs }` that
+    // used to wrap this whole body could only ever absorb a DEFECT — and it
+    // absorbed it into an empty candidate list, which every phase below then
+    // verified against: zero bundles, zero findings, exit 0.
+    const config = loadConfig(cwd);
+    if (!config)
         return outputs;
+    const skillsConfig = config.skills;
+    const defaults = skillsConfig?.defaults;
+    // Dedup guard: key = `skillName\0outputDir`
+    const seen = new Set();
+    const packagingOf = (skillName) => mergeSkillPackagingConfig(defaults, skillsConfig?.config?.[skillName]);
+    // A plugin-local skill is never in place, whatever `publish` says: its plugin copy
+    // is expected below. Counted per discovered SKILL, not per name — a repo-only skill
+    // may share its declared name with a plugin-local one.
+    outputs.inPlace = discovered.filter((skill) => publishScope(skill, packagingOf(skill.name), pluginLocal) === 'in-place').length;
+    // --- Pool skills: candidate dir is dist/skills/<fsName> ---
+    // Expected only when discovered AND published (see BuiltSkillOutputs.expected).
+    // An in-place skill's stale bundle in dist/ is still inspected, just not demanded.
+    const discoveredNames = new Set(discovered.map((skill) => skill.name));
+    const poolNames = new Set([...discoveredNames, ...Object.keys(skillsConfig?.config ?? {})]);
+    for (const skillName of poolNames) {
+        const outputDir = safePath.resolve(cwd, 'dist', 'skills', skillNameToFsPath(skillName));
+        const packaging = packagingOf(skillName);
+        addCheckCandidate(outputs, seen, cwd, { skillName, outputDir, packaging }, discoveredNames.has(skillName) && isSkillPublished(packaging));
     }
-    catch {
-        return { built: [], expected: 0, missing: [] };
+    // --- Tree-copy skills: candidate dirs are plugin output skill dirs ---
+    // Always expected, whatever `publish` says: every location here is a
+    // plugin-local skill the claude build phase packages into the plugin tree —
+    // `publish` scopes the pool only (see `isSkillPublished`).
+    // Per-skill config goes through `pluginLocalSkillConfigEntry` — the plugin build's own
+    // lookup — under the declared name the build reads (`pluginLocalNames`).
+    for (const loc of pluginLocal.locations) {
+        const declaredName = pluginLocalNames.get(safePath.resolve(loc.skillSourceDir));
+        if (declaredName === undefined) {
+            throw new Error(`vat verify defect: no declared name was read for the plugin-local skill at ${loc.skillSourceDir}`);
+        }
+        const perSkill = pluginLocalSkillConfigEntry(skillsConfig?.config, { skillName: declaredName, skillDirPath: loc.skillDirPath });
+        addCheckCandidate(outputs, seen, cwd, {
+            skillName: loc.skillDirPath,
+            outputDir: loc.skillOutputDir,
+            packaging: mergeSkillPackagingConfig(defaults, perSkill),
+        }, true);
     }
+    return outputs;
 }
 /**
  * Check that all dest paths from the merged files config exist in the built output.
@@ -277,11 +304,13 @@ function collectBuiltSkillOutputs(cwd, discovered) {
  *
  * @param discovered - The skills this run discovered from `skills.include`. See
  *   {@link collectBuiltSkillOutputs} for why it is required rather than optional.
+ * @param pluginLocal - The run's plugin-local index — required for the same reason.
+ * @param pluginLocalNames - The declared name of every location in `pluginLocal` — required for the same reason.
  * @returns One result per (skill, outputDir) pair where dests are absent.
  */
-export function checkFilesConfigDests(cwd, discovered) {
+export function checkFilesConfigDests(cwd, discovered, pluginLocal, pluginLocalNames) {
     const results = [];
-    for (const check of collectBuiltSkillOutputs(cwd, discovered).built) {
+    for (const check of collectBuiltSkillOutputs(cwd, discovered, pluginLocal, pluginLocalNames).built) {
         const { skillName, outputDir } = check;
         const mergedFiles = filesOf(check);
         if (mergedFiles.length === 0)
@@ -289,7 +318,6 @@ export function checkFilesConfigDests(cwd, discovered) {
         const missing = [];
         for (const entry of mergedFiles) {
             const destPath = safePath.resolve(outputDir, entry.dest);
-            // eslint-disable-next-line security/detect-non-literal-fs-filename -- destPath resolved from config
             if (!existsSync(destPath)) {
                 missing.push(entry.dest);
             }
@@ -343,10 +371,12 @@ export function checkFilesConfigDests(cwd, discovered) {
  *
  * @param discovered - The skills this run discovered from `skills.include`. See
  *   {@link collectBuiltSkillOutputs} for why it is required rather than optional.
+ * @param pluginLocal - The run's plugin-local index — required for the same reason.
+ * @param pluginLocalNames - The declared name of every location in `pluginLocal` — required for the same reason.
  */
-export function checkPackagedAgentInstructionFiles(cwd, discovered) {
+export function checkPackagedAgentInstructionFiles(cwd, discovered, pluginLocal, pluginLocalNames) {
     const issues = [];
-    const outputs = collectBuiltSkillOutputs(cwd, discovered);
+    const outputs = collectBuiltSkillOutputs(cwd, discovered, pluginLocal, pluginLocalNames);
     for (const check of outputs.built) {
         const raw = detectPackagedAgentInstructionFiles(check.outputDir, cwd, explicitFilesConfigDests(filesOf(check)));
         issues.push(...resolveIssueSeverity(raw, check.packaging.validation));
@@ -354,6 +384,7 @@ export function checkPackagedAgentInstructionFiles(cwd, discovered) {
     return {
         bundlesInspected: outputs.built.length,
         bundlesExpected: outputs.expected,
+        bundlesInPlace: outputs.inPlace,
         bundlesMissing: outputs.missing,
         issues,
     };
@@ -603,6 +634,9 @@ function missingBundlesFinding(crawl) {
  * `success` beside `bundlesInspected: 1`. The crawl now also carries what it
  * should have found, and the document publishes both counts.
  *
+ * One zero IS a verdict: nothing expected because every discovered skill is in
+ * place (`bundlesInPlace > 0`). Zero discovered skills stays refused.
+ *
  * Derived here, in the one function that produces this phase's document, and
  * not in the command body, so no path through the orchestrator can publish
  * `status: success` beside `bundlesInspected: 0` or beside a non-empty
@@ -616,11 +650,12 @@ function missingBundlesFinding(crawl) {
  * Pure, and exported so the refusal is pinned without a project on disk.
  */
 export function buildPackagedContentPhase(crawl) {
-    const { bundlesInspected, bundlesExpected, bundlesMissing, issues: found } = crawl;
+    const { bundlesInspected, bundlesExpected, bundlesInPlace, bundlesMissing, issues: found } = crawl;
     const missing = missingBundlesFinding(crawl);
+    const accountedFor = bundlesExpected === 0 ? bundlesInspected + bundlesInPlace : bundlesInspected;
     const issues = [
         ...missing,
-        ...nothingCheckedFinding(bundlesInspected, [...missing, ...found], () => 'The packaged-content phase inspected 0 built skill bundles, so this phase is not a'
+        ...nothingCheckedFinding(accountedFor, [...missing, ...found], () => 'The packaged-content phase inspected 0 built skill bundles, so this phase is not a'
             + ' verdict: nothing was crawled for files that must not ship, and the document reads'
             + ' the same as a run over clean bundles. Either `vat build` has not run (or wrote'
             + ' somewhere other than dist/), or `skills.include` in vibe-agent-toolkit.config.yaml'
@@ -634,6 +669,7 @@ export function buildPackagedContentPhase(crawl) {
         // The denominator, beside the counts it qualifies — and what it should have been.
         bundlesInspected,
         bundlesExpected,
+        bundlesInPlace,
         bundlesMissing,
         issueCounts: countBySeverity(issues),
         issues: issues.map(toPublishedIssue),
@@ -674,13 +710,18 @@ function asValidationIssues(issues) {
  * document is the artifact of record, and stderr should render exactly what it
  * carries, not a parallel computation that can drift from it.
  */
-export function runPackagedContentPhase(projectRoot, discoveredSkills, logger) {
-    const crawl = checkPackagedAgentInstructionFiles(projectRoot, discoveredSkills);
-    const phase = buildPackagedContentPhase(crawl);
+export function runPackagedContentPhase(projectRoot, discoveredSkills, pluginLocal, pluginLocalNames, logger) {
+    const phase = buildPackagedContentPhase(checkPackagedAgentInstructionFiles(projectRoot, discoveredSkills, pluginLocal, pluginLocalNames));
+    reportPackagedContentPhase(phase, logger);
+    return phase;
+}
+export function reportPackagedContentPhase(phase, logger) {
     if (phase.issues.length > 0) {
         reportPackagedContentIssues(asValidationIssues(phase.issues), logger);
     }
-    return phase;
+    else if (phase.bundlesExpected === 0 && phase.bundlesInspected === 0) {
+        logger.info(`\n▶ Phase: ${PACKAGED_CONTENT} — nothing to inspect: all ${phase.bundlesInPlace} discovered skill(s) are in place (publish: false)`);
+    }
 }
 /**
  * Run the in-process consistency check phase and record its outcome.
@@ -694,7 +735,7 @@ export function runPackagedContentPhase(projectRoot, discoveredSkills, logger) {
  * and the packaged-content and files-config-dests phases need the same list. One
  * crawl per run, one answer to "which skills does this project have".
  */
-function runConsistencyPhase(logger, phaseResults, config, projectRoot, discoveredSkills) {
+function runConsistencyPhase(logger, phaseResults, config, projectRoot, discoveredSkills, pluginLocal) {
     if (!config?.skills) {
         // Nothing to cross-reference, so nothing to report: a run without a
         // `skills:` block is a genuine no-op, and {@link selectInProcessVerifyPhases}
@@ -708,7 +749,7 @@ function runConsistencyPhase(logger, phaseResults, config, projectRoot, discover
         // defensively (and narrows `config.skills` for the call below).
         return;
     }
-    const consistencyResult = runConsistencyChecks([...discoveredSkills], config, projectRoot);
+    const consistencyResult = runConsistencyChecks([...discoveredSkills], config, projectRoot, pluginLocal);
     const issues = consistencyResult.issues;
     if (issues.length > 0) {
         reportConsistencyIssues(issues, logger);
@@ -722,6 +763,55 @@ function runConsistencyPhase(logger, phaseResults, config, projectRoot, discover
     };
     phaseResults.push(result);
 }
+/**
+ * The in-process half of `vat verify`: `files-config-dests`, `packaged-content` and
+ * `consistency`, each where `inProcess` names it.
+ */
+async function runInProcessPhases(run) {
+    const { inProcess, config, projectRoot, logger, phaseResults } = run;
+    // ONE discovery for the whole in-process half of the run. Every phase below
+    // asks the same question — "which skills does this project have" — and each
+    // answer used to be a different one: `consistency` crawled, while
+    // `files-config-dests` and `packaged-content` read `skills.config` keys and
+    // were therefore blind to every skill discovered by a glob.
+    // `'refuse'`: a verify over a population it could not see is the
+    // green-without-checking shape this command exists to refuse. The throw
+    // lands in the command's catch → `handleCommandError`, exit 2, with the
+    // crawl's own root-relative sentence.
+    const discoveredSkills = await discoverSkillsFromConfig(run.skills, projectRoot, 'refuse');
+    // ONE plugin-local index likewise: listing it crawls every plugin, and every phase
+    // below asks it (in-place vs plugin-only, plugin-tree bundles, plugin assignment).
+    const pluginLocal = indexPluginLocalSkills(config, projectRoot);
+    // …and the declared name of each plugin-local skill, which keys its config exactly as
+    // the plugin build keyed it.
+    const pluginLocalNames = await readPluginLocalSkillNames(pluginLocal);
+    // Post-build files config check: verify all dest paths exist in built output
+    if (inProcess.includes(FILES_CONFIG_DESTS)) {
+        const filesDestResults = checkFilesConfigDests(projectRoot, discoveredSkills, pluginLocal, pluginLocalNames);
+        if (filesDestResults.length > 0) {
+            reportFilesDestErrors(filesDestResults, logger);
+            phaseResults.push({
+                name: FILES_CONFIG_DESTS,
+                status: 'error',
+                issueCounts: { errors: filesDestResults.length, warnings: 0, info: 0 },
+            });
+        }
+    }
+    // Packaged-content check: crawl each built skill bundle for repo-internal
+    // agent-instruction files. Publishes its findings INTO the document rather
+    // than only logging them — a file that must not ship has to be visible in
+    // `issueCounts`, or a CI consumer reads a clean report for a bundle carrying
+    // one. Warnings do not fail the run; the exit code still comes from errors.
+    // The zero-bundle refusal is derived inside the builder and logged from the
+    // built phase, so stderr, the document and the exit code carry one list.
+    if (inProcess.includes(PACKAGED_CONTENT)) {
+        phaseResults.push(runPackagedContentPhase(projectRoot, discoveredSkills, pluginLocal, pluginLocalNames, logger));
+    }
+    // Consistency check: cross-reference discovered skills vs package.json and plugin assignments
+    if (inProcess.includes('consistency')) {
+        runConsistencyPhase(logger, phaseResults, config, projectRoot, discoveredSkills, pluginLocal);
+    }
+}
 async function verifyTopLevelCommand(options, command) {
     // First, and before requireProjectRoot: `vat verify dist/skills/demo` used to
     // be accepted, have its path discarded, run wide over the whole project and
@@ -731,13 +821,15 @@ async function verifyTopLevelCommand(options, command) {
     // with "no vibe-agent-toolkit.config.yaml found" would diagnose the wrong
     // problem for anyone running the old invocation outside a project.
     rejectRetiredOnly(options.only, COMMAND_NAME, VERIFY_FULL_RUN_SECONDS);
-    // Spec §7: `vat verify` requires a projectRoot.
-    const projectRoot = requireProjectRoot(process.cwd(), COMMAND_NAME);
     const { logger, startTime } = createPhaseContext(options.debug);
     try {
         // Inside the try, deliberately: phase selection used to throw from out here
         // (on an unroutable `--only`), so the user got a raw Node stack trace and
-        // zero bytes of the structured document a scripted caller parses.
+        // zero bytes of the structured document a scripted caller parses — and so
+        // did "no project here", at Node's default exit 1, which the contract reads
+        // as FINDINGS.
+        // Spec §7: `vat verify` requires a projectRoot.
+        const projectRoot = requireProjectRoot(process.cwd(), COMMAND_NAME);
         const { config, error: configError } = loadConfigTolerant(projectRoot);
         const phases = applyPhaseSelection(selectVerifyPhases(config, configError, options.verbose), logger, startTime);
         // Announced from the same list the in-process gates below read, so the
@@ -752,43 +844,8 @@ async function verifyTopLevelCommand(options, command) {
             // running reports into one unreadable channel.
             phaseResults.push(await runPhase(phase));
         }
-        // ONE discovery for the whole in-process half of the run. Every phase below
-        // asks the same question — "which skills does this project have" — and each
-        // answer used to be a different one: `consistency` crawled, while
-        // `files-config-dests` and `packaged-content` read `skills.config` keys and
-        // were therefore blind to every skill discovered by a glob.
-        // `'refuse'`: a verify over a population it could not see is the
-        // green-without-checking shape this command exists to refuse. The throw
-        // lands in the command's catch → `handleCommandError`, exit 2, with the
-        // crawl's own root-relative sentence.
-        const discoveredSkills = inProcess.length > 0 && config?.skills
-            ? await discoverSkillsFromConfig(config.skills, projectRoot, 'refuse')
-            : [];
-        // Post-build files config check: verify all dest paths exist in built output
-        if (inProcess.includes(FILES_CONFIG_DESTS)) {
-            const filesDestResults = checkFilesConfigDests(projectRoot, discoveredSkills);
-            if (filesDestResults.length > 0) {
-                reportFilesDestErrors(filesDestResults, logger);
-                phaseResults.push({
-                    name: FILES_CONFIG_DESTS,
-                    status: 'error',
-                    issueCounts: { errors: filesDestResults.length, warnings: 0, info: 0 },
-                });
-            }
-        }
-        // Packaged-content check: crawl each built skill bundle for repo-internal
-        // agent-instruction files. Publishes its findings INTO the document rather
-        // than only logging them — a file that must not ship has to be visible in
-        // `issueCounts`, or a CI consumer reads a clean report for a bundle carrying
-        // one. Warnings do not fail the run; the exit code still comes from errors.
-        // The zero-bundle refusal is derived inside the builder and logged from the
-        // built phase, so stderr, the document and the exit code carry one list.
-        if (inProcess.includes(PACKAGED_CONTENT)) {
-            phaseResults.push(runPackagedContentPhase(projectRoot, discoveredSkills, logger));
-        }
-        // Consistency check: cross-reference discovered skills vs package.json and plugin assignments
-        if (inProcess.includes('consistency')) {
-            runConsistencyPhase(logger, phaseResults, config, projectRoot, discoveredSkills);
+        if (inProcess.length > 0 && config?.skills) {
+            await runInProcessPhases({ inProcess, config, skills: config.skills, projectRoot, logger, phaseResults });
         }
         const duration = Date.now() - startTime;
         // Worst-wins across phases, with `system-error` outranking `error`: a phase

package/dist/commands/verify.js.map

@@ -1 +1 @@
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package/dist/index.d.ts

@@ -8,5 +8,4 @@ export { version, getVersionString, type VersionContext } from './version.js';
 export { createLogger, type Logger, type LoggerOptions } from './utils/logger.js';
 export { writeYamlOutput, writeTestFormatError, writeStdoutSync, } from './utils/output.js';
 export { loadConfig } from './utils/config-loader.js';
-export { ProjectConfigSchema, type ProjectConfig, type ResourcesConfig, type CollectionConfig as ResourceCollection, } from '@vibe-agent-toolkit/resources';
 //# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAGH,OAAO,EAAE,OAAO,EAAE,gBAAgB,EAAE,KAAK,cAAc,EAAE,MAAM,cAAc,CAAC;AAG9E,OAAO,EAAE,YAAY,EAAE,KAAK,MAAM,EAAE,KAAK,aAAa,EAAE,MAAM,mBAAmB,CAAC;AAOlF,OAAO,EACL,eAAe,EACf,oBAAoB,EACpB,eAAe,GAChB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AACtD,OAAO,EACL,mBAAmB,EACnB,KAAK,aAAa,EAClB,KAAK,eAAe,EACpB,KAAK,gBAAgB,IAAI,kBAAkB,GAC5C,MAAM,+BAA+B,CAAC"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAGH,OAAO,EAAE,OAAO,EAAE,gBAAgB,EAAE,KAAK,cAAc,EAAE,MAAM,cAAc,CAAC;AAG9E,OAAO,EAAE,YAAY,EAAE,KAAK,MAAM,EAAE,KAAK,aAAa,EAAE,MAAM,mBAAmB,CAAC;AAOlF,OAAO,EACL,eAAe,EACf,oBAAoB,EACpB,eAAe,GAChB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC"}

package/dist/index.js

@@ -16,5 +16,9 @@ export { createLogger } from './utils/logger.js';
 // it here.
 export { writeYamlOutput, writeTestFormatError, writeStdoutSync, } from './utils/output.js';
 export { loadConfig } from './utils/config-loader.js';
-export { ProjectConfigSchema, } from '@vibe-agent-toolkit/resources';
+// `ProjectConfigSchema`, `ProjectConfig`, `ResourcesConfig` and `CollectionConfig`
+// are `@vibe-agent-toolkit/resources`' API and are imported from there. They were
+// re-exported here (one under an alias) — the exact "re-export types for
+// convenience" the pre-1.0 policy forbids, on the one barrel adopters import
+// for programmatic use.
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,4CAA4C;AAC5C,OAAO,EAAE,OAAO,EAAE,gBAAgB,EAAuB,MAAM,cAAc,CAAC;AAE9E,mCAAmC;AACnC,OAAO,EAAE,YAAY,EAAmC,MAAM,mBAAmB,CAAC;AAClF,+EAA+E;AAC/E,iFAAiF;AACjF,gFAAgF;AAChF,+EAA+E;AAC/E,iFAAiF;AACjF,WAAW;AACX,OAAO,EACL,eAAe,EACf,oBAAoB,EACpB,eAAe,GAChB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AACtD,OAAO,EACL,mBAAmB,GAIpB,MAAM,+BAA+B,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,4CAA4C;AAC5C,OAAO,EAAE,OAAO,EAAE,gBAAgB,EAAuB,MAAM,cAAc,CAAC;AAE9E,mCAAmC;AACnC,OAAO,EAAE,YAAY,EAAmC,MAAM,mBAAmB,CAAC;AAClF,+EAA+E;AAC/E,iFAAiF;AACjF,gFAAgF;AAChF,+EAA+E;AAC/E,iFAAiF;AACjF,WAAW;AACX,OAAO,EACL,eAAe,EACf,oBAAoB,EACpB,eAAe,GAChB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AACtD,mFAAmF;AACnF,kFAAkF;AAClF,yEAAyE;AACzE,6EAA6E;AAC7E,wBAAwB"}

package/dist/report-schemas.d.ts

@@ -0,0 +1,45 @@
+/**
+ * Every structured document a `vat` command publishes, and what shape it has.
+ *
+ * 🔑 **Zero committed schemas described any CLI output document** — 31 schema
+ * artifacts shipped and none was a report — so an adopter's `jq` recipe, CI
+ * adapter or SARIF exporter was written against an example in a doc, or
+ * against a run. This registry is the one list; `scripts/generate-json-schemas.ts`
+ * writes `schemas/<name>.json` from it, `test/report-schemas.test.ts` pins the
+ * emitted files against a fresh render and walks the Commander tree to prove
+ * every command that offers `--format json` (or `--yaml`) is listed here.
+ *
+ * ## Three kinds of entry, and the ratchet between them
+ *
+ * - `report` — the document IS the shared envelope (`Report<T>` from
+ *   `@vibe-agent-toolkit/schema`): `status`, a REQUIRED `examined`,
+ *   `findings`, `summary`, `data`. The schema is emitted and pinned.
+ * - `external` — the document's shape is owned by someone else (an Anthropic
+ *   Admin API object passed through, a specification's own artifact). Never
+ *   renamed to the envelope; listed so the walk knows it was considered.
+ * - `legacy` — a VAT-owned shape not yet migrated to the envelope. Each carries
+ *   the reason. ⛔ **This list may only SHRINK.** An entry leaves when its
+ *   command publishes the envelope (and gains a `report` entry with a schema);
+ *   a new command is never added here — it publishes the envelope from day one.
+ */
+import type { ZodTypeAny } from 'zod';
+/** A command whose structured document is the shared envelope, with its emitted schema. */
+export interface ReportEntry {
+    readonly kind: 'report';
+    /** The command as typed after `vat`, e.g. `okf validate`. */
+    readonly command: string;
+    /** Basename of `schemas/<name>.json`. */
+    readonly name: string;
+    readonly schema: ZodTypeAny;
+}
+/** A command whose document shape belongs to someone else, or has not been migrated yet. */
+export interface UnmigratedEntry {
+    readonly kind: 'external' | 'legacy';
+    /** The command as typed after `vat`; a trailing ` *` covers a whole group. */
+    readonly command: string;
+    /** Who owns the shape, or what the migration is waiting on. */
+    readonly reason: string;
+}
+export type ReportSchemaEntry = ReportEntry | UnmigratedEntry;
+export declare const REPORT_SCHEMAS: readonly ReportSchemaEntry[];
+//# sourceMappingURL=report-schemas.d.ts.map

package/dist/report-schemas.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"report-schemas.d.ts","sourceRoot":"","sources":["../src/report-schemas.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;;;;;;;GAuBG;AAEH,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,KAAK,CAAC;AAOtC,2FAA2F;AAC3F,MAAM,WAAW,WAAW;IAC1B,QAAQ,CAAC,IAAI,EAAE,QAAQ,CAAC;IACxB,6DAA6D;IAC7D,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;IACzB,yCAAyC;IACzC,QAAQ,CAAC,IAAI,EAAE,MAAM,CAAC;IACtB,QAAQ,CAAC,MAAM,EAAE,UAAU,CAAC;CAC7B;AAED,4FAA4F;AAC5F,MAAM,WAAW,eAAe;IAC9B,QAAQ,CAAC,IAAI,EAAE,UAAU,GAAG,QAAQ,CAAC;IACrC,8EAA8E;IAC9E,QAAQ,CAAC,OAAO,EAAE,MAAM,CAAC;IACzB,+DAA+D;IAC/D,QAAQ,CAAC,MAAM,EAAE,MAAM,CAAC;CACzB;AAED,MAAM,MAAM,iBAAiB,GAAG,WAAW,GAAG,eAAe,CAAC;AAE9D,eAAO,MAAM,cAAc,EAAE,SAAS,iBAAiB,EAwEtD,CAAC"}