@vibe-agent-toolkit/cli 0.2.0-rc.7 → 0.2.0-rc.8

package/dist/commands/skills/source-resolvers.d.ts

@@ -36,4 +36,19 @@ export interface ResolvedNpmSource {
  * Caller must clean up all entries in tempDirs when finished.
  */
 export declare function resolveNpmOrTarballSource(source: string): Promise<ResolvedNpmSource>;
+/**
+ * Remove the temp directories a resolved source left behind.
+ *
+ * Best-effort by design — the command's answer is already out, and a temp
+ * directory that will not go (an `EBUSY` on Windows, a handle a scanner still
+ * holds) must not turn a finished install into a failed one. But best-effort
+ * is not silent: a directory left behind is named, so the operator can remove
+ * what this run could not. `force: true` already tolerates one that is gone.
+ *
+ * @param tempDirs - What {@link resolveNpmOrTarballSource} minted
+ * @param logger - Where a directory that stays is reported
+ */
+export declare function removeResolvedTempDirs(tempDirs: readonly string[], logger: {
+    warn: (message: string) => void;
+}): Promise<void>;
 //# sourceMappingURL=source-resolvers.d.ts.map

package/dist/commands/skills/source-resolvers.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"source-resolvers.d.ts","sourceRoot":"","sources":["../../../src/commands/skills/source-resolvers.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAUH;;GAEG;AACH,wBAAgB,oBAAoB,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAM5D;AAED;;;;;;GAMG;AACH,wBAAsB,oBAAoB,CACxC,WAAW,EAAE,MAAM,GAClB,OAAO,CAAC;IAAE,OAAO,EAAE,MAAM,CAAC;IAAC,UAAU,EAAE,MAAM,CAAA;CAAE,CAAC,CAclD;AAED;;;GAGG;AACH,wBAAgB,yBAAyB,CAAC,UAAU,EAAE,MAAM,GAAG,MAAM,CAUpE;AAED,MAAM,WAAW,iBAAiB;IAChC,8EAA8E;IAC9E,SAAS,EAAE,MAAM,CAAC;IAClB,8CAA8C;IAC9C,QAAQ,EAAE,MAAM,EAAE,CAAC;CACpB;AAED;;;;GAIG;AACH,wBAAsB,yBAAyB,CAC7C,MAAM,EAAE,MAAM,GACb,OAAO,CAAC,iBAAiB,CAAC,CAmB5B"}
+{"version":3,"file":"source-resolvers.d.ts","sourceRoot":"","sources":["../../../src/commands/skills/source-resolvers.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAUH;;GAEG;AACH,wBAAgB,oBAAoB,CAAC,MAAM,EAAE,MAAM,GAAG,OAAO,CAM5D;AAED;;;;;;GAMG;AACH,wBAAsB,oBAAoB,CACxC,WAAW,EAAE,MAAM,GAClB,OAAO,CAAC;IAAE,OAAO,EAAE,MAAM,CAAC;IAAC,UAAU,EAAE,MAAM,CAAA;CAAE,CAAC,CAalD;AAED;;;GAGG;AACH,wBAAgB,yBAAyB,CAAC,UAAU,EAAE,MAAM,GAAG,MAAM,CASpE;AAED,MAAM,WAAW,iBAAiB;IAChC,8EAA8E;IAC9E,SAAS,EAAE,MAAM,CAAC;IAClB,8CAA8C;IAC9C,QAAQ,EAAE,MAAM,EAAE,CAAC;CACpB;AAED;;;;GAIG;AACH,wBAAsB,yBAAyB,CAC7C,MAAM,EAAE,MAAM,GACb,OAAO,CAAC,iBAAiB,CAAC,CAmB5B;AAED;;;;;;;;;;;GAWG;AACH,wBAAsB,sBAAsB,CAC1C,QAAQ,EAAE,SAAS,MAAM,EAAE,EAC3B,MAAM,EAAE;IAAE,IAAI,EAAE,CAAC,OAAO,EAAE,MAAM,KAAK,IAAI,CAAA;CAAE,GAC1C,OAAO,CAAC,IAAI,CAAC,CASf"}

package/dist/commands/skills/source-resolvers.js

@@ -5,8 +5,8 @@
  * Callers are responsible for cleaning up temp directories after use.
  */
 import { existsSync } from 'node:fs';
-import { mkdtemp } from 'node:fs/promises';
-import { mkdirSyncReal, normalizedTmpdir, safePath } from '@vibe-agent-toolkit/utils';
+import { mkdtemp, rm } from 'node:fs/promises';
+import { mkdirSyncReal, normalizedTmpdir, safePath, toForwardSlash } from '@vibe-agent-toolkit/utils';
 import * as tar from 'tar';
 import { downloadNpmPackage } from '../claude/plugin/helpers.js';
 /**
@@ -29,7 +29,6 @@ export async function extractTarballToTemp(tarballPath) {
     mkdirSyncReal(tempDir, { recursive: true });
     await tar.extract({ file: tarballPath, cwd: tempDir });
     const packageDir = safePath.join(tempDir, 'package');
-    // eslint-disable-next-line security/detect-non-literal-fs-filename -- temp path we just created
     if (!existsSync(packageDir)) {
         throw new Error(`Tarball does not contain a package/ directory: ${tarballPath}`);
     }
@@ -41,7 +40,6 @@ export async function extractTarballToTemp(tarballPath) {
  */
 export function findSkillsDirInNpmPackage(packageDir) {
     const distSkills = safePath.join(packageDir, 'dist', 'skills');
-    // eslint-disable-next-line security/detect-non-literal-fs-filename -- temp path
     if (existsSync(distSkills)) {
         return distSkills;
     }
@@ -70,4 +68,27 @@ export async function resolveNpmOrTarballSource(source) {
         tempDirs: [tempDir],
     };
 }
+/**
+ * Remove the temp directories a resolved source left behind.
+ *
+ * Best-effort by design — the command's answer is already out, and a temp
+ * directory that will not go (an `EBUSY` on Windows, a handle a scanner still
+ * holds) must not turn a finished install into a failed one. But best-effort
+ * is not silent: a directory left behind is named, so the operator can remove
+ * what this run could not. `force: true` already tolerates one that is gone.
+ *
+ * @param tempDirs - What {@link resolveNpmOrTarballSource} minted
+ * @param logger - Where a directory that stays is reported
+ */
+export async function removeResolvedTempDirs(tempDirs, logger) {
+    for (const dir of tempDirs) {
+        try {
+            await rm(dir, { recursive: true, force: true });
+        }
+        catch (error) {
+            const reason = error instanceof Error ? error.message : String(error);
+            logger.warn(`Could not remove temp directory ${toForwardSlash(dir)}: ${reason}`);
+        }
+    }
+}
 //# sourceMappingURL=source-resolvers.js.map

package/dist/commands/skills/source-resolvers.js.map

@@ -1 +1 @@
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+{"version":3,"file":"source-resolvers.js","sourceRoot":"","sources":["../../../src/commands/skills/source-resolvers.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,OAAO,EAAE,UAAU,EAAE,MAAM,SAAS,CAAC;AACrC,OAAO,EAAE,OAAO,EAAE,EAAE,EAAE,MAAM,kBAAkB,CAAC;AAE/C,OAAO,EAAE,aAAa,EAAE,gBAAgB,EAAE,QAAQ,EAAE,cAAc,EAAE,MAAM,2BAA2B,CAAC;AACtG,OAAO,KAAK,GAAG,MAAM,KAAK,CAAC;AAE3B,OAAO,EAAE,kBAAkB,EAAE,MAAM,6BAA6B,CAAC;AAEjE;;GAEG;AACH,MAAM,UAAU,oBAAoB,CAAC,MAAc;IACjD,OAAO,CACL,MAAM,CAAC,UAAU,CAAC,MAAM,CAAC;QACzB,MAAM,CAAC,QAAQ,CAAC,MAAM,CAAC;QACvB,MAAM,CAAC,QAAQ,CAAC,SAAS,CAAC,CAC3B,CAAC;AACJ,CAAC;AAED;;;;;;GAMG;AACH,MAAM,CAAC,KAAK,UAAU,oBAAoB,CACxC,WAAmB;IAEnB,MAAM,OAAO,GAAG,MAAM,OAAO,CAC3B,QAAQ,CAAC,IAAI,CAAC,gBAAgB,EAAE,EAAE,iBAAiB,CAAC,CACrD,CAAC;IACF,aAAa,CAAC,OAAO,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IAC5C,MAAM,GAAG,CAAC,OAAO,CAAC,EAAE,IAAI,EAAE,WAAW,EAAE,GAAG,EAAE,OAAO,EAAE,CAAC,CAAC;IACvD,MAAM,UAAU,GAAG,QAAQ,CAAC,IAAI,CAAC,OAAO,EAAE,SAAS,CAAC,CAAC;IACrD,IAAI,CAAC,UAAU,CAAC,UAAU,CAAC,EAAE,CAAC;QAC5B,MAAM,IAAI,KAAK,CACb,kDAAkD,WAAW,EAAE,CAChE,CAAC;IACJ,CAAC;IACD,OAAO,EAAE,OAAO,EAAE,UAAU,EAAE,CAAC;AACjC,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,yBAAyB,CAAC,UAAkB;IAC1D,MAAM,UAAU,GAAG,QAAQ,CAAC,IAAI,CAAC,UAAU,EAAE,MAAM,EAAE,QAAQ,CAAC,CAAC;IAC/D,IAAI,UAAU,CAAC,UAAU,CAAC,EAAE,CAAC;QAC3B,OAAO,UAAU,CAAC;IACpB,CAAC;IACD,MAAM,IAAI,KAAK,CACb,8CAA8C,UAAU,IAAI;QAC1D,gDAAgD,CACnD,CAAC;AACJ,CAAC;AASD;;;;GAIG;AACH,MAAM,CAAC,KAAK,UAAU,yBAAyB,CAC7C,MAAc;IAEd,IAAI,MAAM,CAAC,UAAU,CAAC,MAAM,CAAC,EAAE,CAAC;QAC9B,MAAM,OAAO,GAAG,MAAM,OAAO,CAC3B,QAAQ,CAAC,IAAI,CAAC,gBAAgB,EAAE,EAAE,iBAAiB,CAAC,CACrD,CAAC;QACF,aAAa,CAAC,OAAO,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;QAC5C,MAAM,UAAU,GAAG,kBAAkB,CAAC,MAAM,EAAE,OAAO,CAAC,CAAC;QACvD,OAAO;YACL,SAAS,EAAE,yBAAyB,CAAC,UAAU,CAAC;YAChD,QAAQ,EAAE,CAAC,OAAO,CAAC;SACpB,CAAC;IACJ,CAAC;IAED,+BAA+B;IAC/B,MAAM,EAAE,OAAO,EAAE,UAAU,EAAE,GAAG,MAAM,oBAAoB,CAAC,MAAM,CAAC,CAAC;IACnE,OAAO;QACL,SAAS,EAAE,yBAAyB,CAAC,UAAU,CAAC;QAChD,QAAQ,EAAE,CAAC,OAAO,CAAC;KACpB,CAAC;AACJ,CAAC;AAED;;;;;;;;;;;GAWG;AACH,MAAM,CAAC,KAAK,UAAU,sBAAsB,CAC1C,QAA2B,EAC3B,MAA2C;IAE3C,KAAK,MAAM,GAAG,IAAI,QAAQ,EAAE,CAAC;QAC3B,IAAI,CAAC;YACH,MAAM,EAAE,CAAC,GAAG,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,KAAK,EAAE,IAAI,EAAE,CAAC,CAAC;QAClD,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACf,MAAM,MAAM,GAAG,KAAK,YAAY,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,KAAK,CAAC,CAAC;YACtE,MAAM,CAAC,IAAI,CAAC,mCAAmC,cAAc,CAAC,GAAG,CAAC,KAAK,MAAM,EAAE,CAAC,CAAC;QACnF,CAAC;IACH,CAAC;AACH,CAAC"}

package/dist/commands/validate.d.ts

@@ -20,7 +20,7 @@
  * would couple `vat validate` to a prior `vat build` and overlap `vat verify`.
  * Keeping it build-free makes `vat validate` safe for pre-commit / CI-before-
  * build. If a single "validate the whole shippable thing" command is later
- * wanted, fold the marketplace phase in here (mirror verify.ts) — see #128.
+ * wanted, fold the marketplace phase in here (mirror verify.ts).
  */
 import { type ProjectConfig } from '@vibe-agent-toolkit/resources';
 import { Command } from 'commander';

package/dist/commands/validate.js

@@ -20,7 +20,7 @@
  * would couple `vat validate` to a prior `vat build` and overlap `vat verify`.
  * Keeping it build-free makes `vat validate` safe for pre-commit / CI-before-
  * build. If a single "validate the whole shippable thing" command is later
- * wanted, fold the marketplace phase in here (mirror verify.ts) — see #128.
+ * wanted, fold the marketplace phase in here (mirror verify.ts).
  */
 import { Command } from 'commander';
 import { handleCommandError } from '../utils/command-error.js';
@@ -39,8 +39,8 @@ const VALIDATE_VOCABULARY = {
     verb: 'validate',
     validNames: VALID_SURFACES,
     noop: {
-        // A bare run with nothing configured is a clean no-op (exit 0, per issue
-        // #128's "doesn't check what it doesn't know about") — but silent success
+        // A bare run with nothing configured is a clean no-op (exit 0: the command
+        // doesn't check what it doesn't know about) — but silent success
         // on stdout alone is indistinguishable, to anyone watching only the exit
         // code, from a run that actually validated something. Warn on stderr so a
         // config typo (e.g. `recources:`) doesn't masquerade as "all good."
@@ -160,12 +160,14 @@ async function validateTopLevelCommand(options, command) {
     // with "no vibe-agent-toolkit.config.yaml found" would diagnose the wrong
     // problem for anyone running the old invocation outside a project.
     rejectRetiredOnly(options.only, COMMAND_NAME, VALIDATE_FULL_RUN_SECONDS);
-    // requireProjectRoot returns the discovered root; read config from there so a
-    // subdirectory invocation doesn't load an empty config and falsely pass.
-    const projectRoot = requireProjectRoot(process.cwd(), COMMAND_NAME);
     const logger = createLogger(options.debug ? { debug: true } : {});
     const startTime = Date.now();
     try {
+        // Inside the try: outside it, "no project here" was an unhandled rejection,
+        // Node's default exit 1 — which the exit-code contract reads as FINDINGS.
+        // requireProjectRoot returns the discovered root; read config from there so a
+        // subdirectory invocation doesn't load an empty config and falsely pass.
+        const projectRoot = requireProjectRoot(process.cwd(), COMMAND_NAME);
         const phases = applyPhaseSelection(selectValidateSurfaces(loadConfig(projectRoot), options.verbose === true), logger, startTime);
         logger.info(`✅ vat validate (surfaces: ${phases.map((p) => p.name).join(' → ')})`);
         const phaseResults = [];

package/dist/commands/validate.js.map

@@ -1 +1 @@
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package/dist/commands/verify.d.ts

@@ -18,7 +18,6 @@ import type { ProjectConfig } from '@vibe-agent-toolkit/resources';
 import { type SeverityCounts, type ValidationIssue } from '@vibe-agent-toolkit/schema';
 import { Command } from 'commander';
 import type { createLogger } from '../utils/logger.js';
-import { type ConsistencyIssueSeverity } from './consistency-check.js';
 import { type PhaseResult, type PhaseSelection } from './phase-utils.js';
 import type { DiscoveredSkill } from './skills/command-helpers.js';
 export interface VerifyCommandOptions {
@@ -105,6 +104,8 @@ export interface PackagedContentCrawl {
     bundlesInspected: number;
     /** Bundles `vat build` produces for this run's discovered skills — what the denominator should be. */
     bundlesExpected: number;
+    /** Discovered skills declared `publish: false` — used in place, so no bundle is expected for them. */
+    bundlesInPlace: number;
     /** Expected bundles absent from disk, as `cwd`-relative paths. Non-empty means the phase is not a verdict. */
     bundlesMissing: string[];
     issues: ValidationIssue[];
@@ -139,7 +140,7 @@ export declare function selectVerifyPhases(config: ProjectConfig | undefined, co
 export declare function formatVerifyAnnouncement(delegatedPhaseNames: readonly string[], config: ProjectConfig | undefined): string;
 /** An in-process phase's finding as it appears in the archived YAML. */
 interface PublishedIssue {
-    severity: ValidationIssue['severity'] | ConsistencyIssueSeverity;
+    severity: ValidationIssue['severity'];
     code: string;
     message: string;
     fix: string;
@@ -181,6 +182,7 @@ interface FindingsPhaseResult extends PhaseResult {
 export interface PackagedContentPhaseResult extends FindingsPhaseResult {
     bundlesInspected: number;
     bundlesExpected: number;
+    bundlesInPlace: number;
     bundlesMissing: string[];
 }
 /**
@@ -198,6 +200,9 @@ export interface PackagedContentPhaseResult extends FindingsPhaseResult {
  * `success` beside `bundlesInspected: 1`. The crawl now also carries what it
  * should have found, and the document publishes both counts.
  *
+ * One zero IS a verdict: nothing expected because every discovered skill is in
+ * place (`bundlesInPlace > 0`). Zero discovered skills stays refused.
+ *
  * Derived here, in the one function that produces this phase's document, and
  * not in the command body, so no path through the orchestrator can publish
  * `status: success` beside `bundlesInspected: 0` or beside a non-empty
@@ -231,5 +236,6 @@ export declare function buildPackagedContentPhase(crawl: PackagedContentCrawl):
  * carries, not a parallel computation that can drift from it.
  */
 export declare function runPackagedContentPhase(projectRoot: string, discoveredSkills: readonly DiscoveredSkill[], logger: ReturnType<typeof createLogger>): PackagedContentPhaseResult;
+export declare function reportPackagedContentPhase(phase: PackagedContentPhaseResult, logger: ReturnType<typeof createLogger>): void;
 export {};
 //# sourceMappingURL=verify.d.ts.map

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package/dist/commands/verify.js

@@ -18,7 +18,7 @@ import { existsSync, statSync } from 'node:fs';
 import { basename } from 'node:path';
 import { computeTreeCopiedSkillLocations, detectPackagedAgentInstructionFiles, explicitFilesConfigDests, } from '@vibe-agent-toolkit/agent-skills';
 import { calculateValidationStatus, countBySeverity, } from '@vibe-agent-toolkit/schema';
-import { safePath, toForwardSlash } from '@vibe-agent-toolkit/utils';
+import { isPathAbsentError, safePath, toForwardSlash } from '@vibe-agent-toolkit/utils';
 import { Command } from 'commander';
 import { handleCommandError } from '../utils/command-error.js';
 import { loadConfig } from '../utils/config-loader.js';
@@ -27,7 +27,7 @@ import { resolveIssueSeverity } from '../utils/issue-severity.js';
 import { writeYamlOutput } from '../utils/output.js';
 import { requireProjectRoot } from '../utils/project-root-policy.js';
 import { nothingCheckedFinding, runIntegrityFinding } from '../utils/run-integrity.js';
-import { mergeSkillPackagingConfig } from '../utils/skill-packaging-config.js';
+import { isSkillPublished, mergeSkillPackagingConfig } from '../utils/skill-packaging-config.js';
 import { runMarketplaceValidatePhase } from './claude/marketplace/validate.js';
 import { runConsistencyChecks, } from './consistency-check.js';
 import { addRetiredOnlyOption, aggregatePhaseStatus, applyPhaseSelection, createPhaseContext, decidePhaseSelection, exitCodeForPhases, rejectRetiredOnly, runPhase, } from './phase-utils.js';
@@ -102,6 +102,12 @@ Output:
     a pass: a run that found none of the build (dist/ not built, or a
     skills.include glob that matched nothing) or only part of it (a bundle
     deleted, a skill added since the last build) is not a verdict on what ships.
+    A skill whose merged config says publish: false is IN-PLACE — never
+    bundled by 'vat build', so no pool bundle is expected for it (a stale one
+    in dist/skills is still inspected); bundlesInPlace counts them, and a run
+    whose every discovered skill is in place passes with nothing to inspect. A
+    plugin-local skill is expected in its plugin tree regardless. Declare skills.defaults.publish: false for a project
+    that builds with --only claude and uses its other skills from the repo.
   Progress and validation errors → stderr (streamed live)
 
   By default each delegated phase reports a per-asset summary plus the assets
@@ -143,20 +149,25 @@ function filesOf(entry) {
     return entry.packaging.files ?? [];
 }
 /**
- * Whether `dir` is a directory — `false` for a file, for nothing, and for a
- * path the process cannot stat. All three are "no bundle here": a bundle is a
- * tree, and a regular FILE sitting where one should be passed `existsSync`,
- * was counted as built, and the packaged-content crawl then threw `Base path is
- * not a directory: /abs/…` out of the whole command — exit 2, no document, an
- * absolute path on stderr — where the missing-bundle lane names it at exit 1.
+ * Whether `dir` is a directory — `false` for a file and for nothing. Both are
+ * "no bundle here": a bundle is a tree, and a regular FILE sitting where one
+ * should be passed `existsSync`, was counted as built, and the packaged-content
+ * crawl then threw `Base path is not a directory: /abs/…` out of the whole
+ * command — exit 2, no document, an absolute path on stderr — where the
+ * missing-bundle lane names it at exit 1.
+ *
+ * A path the process cannot stat is NOT "no bundle here" and throws: reading a
+ * refused `dist/skills/x` as missing would name it under `missing` with a
+ * remedy ("run vat build") that cannot help.
  */
 function isDirectory(dir) {
     try {
-        // eslint-disable-next-line security/detect-non-literal-fs-filename -- outputDir is resolved from config, not user input
         return statSync(dir).isDirectory();
     }
-    catch {
-        return false;
+    catch (error) {
+        if (isPathAbsentError(error))
+            return false;
+        throw error;
     }
 }
 /**
@@ -229,45 +240,52 @@ function addCheckCandidate(outputs, seen, cwd, candidate, expected) {
  * this command.
  */
 function collectBuiltSkillOutputs(cwd, discovered) {
-    const outputs = { built: [], expected: 0, missing: [] };
-    try {
-        const config = loadConfig(cwd);
-        if (!config)
-            return outputs;
-        const skillsConfig = config.skills;
-        const defaults = skillsConfig?.defaults;
-        // Dedup guard: key = `skillName\0outputDir`
-        const seen = new Set();
-        // --- Pool skills: candidate dir is dist/skills/<fsName> ---
-        // Expected only when discovered: `vat skills build` builds every discovered
-        // skill and nothing else (see BuiltSkillOutputs.expected).
-        const discoveredNames = new Set(discovered.map((skill) => skill.name));
-        const poolNames = new Set([...discoveredNames, ...Object.keys(skillsConfig?.config ?? {})]);
-        for (const skillName of poolNames) {
-            const perSkill = skillsConfig?.config?.[skillName];
-            const outputDir = safePath.resolve(cwd, 'dist', 'skills', skillNameToFsPath(skillName));
-            addCheckCandidate(outputs, seen, cwd, { skillName, outputDir, packaging: mergeSkillPackagingConfig(defaults, perSkill) }, discoveredNames.has(skillName));
-        }
-        // --- Tree-copy skills: candidate dirs are plugin output skill dirs ---
-        // Always expected: every location here is a plugin-local skill the claude
-        // build phase packages into the plugin tree.
-        for (const loc of computeTreeCopiedSkillLocations(config, cwd)) {
-            // Per-skill config is keyed by the skill's declared NAME. `skillDirPath` is a
-            // path (`group/nested-skill` for a nested skill), so try its trailing segment
-            // too — the spelling that matches for every skill whose dir is named after it.
-            const dirLeaf = basename(loc.skillDirPath);
-            const perSkill = (skillsConfig?.config?.[loc.skillDirPath] ?? skillsConfig?.config?.[dirLeaf]);
-            addCheckCandidate(outputs, seen, cwd, {
-                skillName: loc.skillDirPath,
-                outputDir: loc.skillOutputDir,
-                packaging: mergeSkillPackagingConfig(defaults, perSkill),
-            }, true);
-        }
+    const outputs = { built: [], expected: 0, inPlace: 0, missing: [] };
+    // No `try`, deliberately. The config was already loaded by the command (see
+    // `loadConfigTolerant`) and the in-process phases run only when it loaded, so
+    // `loadConfig` here answers from cache. The `catch { return outputs }` that
+    // used to wrap this whole body could only ever absorb a DEFECT — and it
+    // absorbed it into an empty candidate list, which every phase below then
+    // verified against: zero bundles, zero findings, exit 0.
+    const config = loadConfig(cwd);
+    if (!config)
         return outputs;
+    const skillsConfig = config.skills;
+    const defaults = skillsConfig?.defaults;
+    // Dedup guard: key = `skillName\0outputDir`
+    const seen = new Set();
+    // --- Pool skills: candidate dir is dist/skills/<fsName> ---
+    // Expected only when discovered AND published (see BuiltSkillOutputs.expected).
+    // An in-place skill's stale bundle in dist/ is still inspected, just not demanded.
+    const discoveredNames = new Set(discovered.map((skill) => skill.name));
+    const poolNames = new Set([...discoveredNames, ...Object.keys(skillsConfig?.config ?? {})]);
+    for (const skillName of poolNames) {
+        const perSkill = skillsConfig?.config?.[skillName];
+        const outputDir = safePath.resolve(cwd, 'dist', 'skills', skillNameToFsPath(skillName));
+        const packaging = mergeSkillPackagingConfig(defaults, perSkill);
+        const discoveredSkill = discoveredNames.has(skillName);
+        const published = isSkillPublished(packaging);
+        if (discoveredSkill && !published)
+            outputs.inPlace += 1;
+        addCheckCandidate(outputs, seen, cwd, { skillName, outputDir, packaging }, discoveredSkill && published);
     }
-    catch {
-        return { built: [], expected: 0, missing: [] };
+    // --- Tree-copy skills: candidate dirs are plugin output skill dirs ---
+    // Always expected, whatever `publish` says: every location here is a
+    // plugin-local skill the claude build phase packages into the plugin tree —
+    // `publish` scopes the pool only (see `isSkillPublished`).
+    for (const loc of computeTreeCopiedSkillLocations(config, cwd)) {
+        // Per-skill config is keyed by the skill's declared NAME. `skillDirPath` is a
+        // path (`group/nested-skill` for a nested skill), so try its trailing segment
+        // too — the spelling that matches for every skill whose dir is named after it.
+        const dirLeaf = basename(loc.skillDirPath);
+        const perSkill = (skillsConfig?.config?.[loc.skillDirPath] ?? skillsConfig?.config?.[dirLeaf]);
+        addCheckCandidate(outputs, seen, cwd, {
+            skillName: loc.skillDirPath,
+            outputDir: loc.skillOutputDir,
+            packaging: mergeSkillPackagingConfig(defaults, perSkill),
+        }, true);
     }
+    return outputs;
 }
 /**
  * Check that all dest paths from the merged files config exist in the built output.
@@ -289,7 +307,6 @@ export function checkFilesConfigDests(cwd, discovered) {
         const missing = [];
         for (const entry of mergedFiles) {
             const destPath = safePath.resolve(outputDir, entry.dest);
-            // eslint-disable-next-line security/detect-non-literal-fs-filename -- destPath resolved from config
             if (!existsSync(destPath)) {
                 missing.push(entry.dest);
             }
@@ -354,6 +371,7 @@ export function checkPackagedAgentInstructionFiles(cwd, discovered) {
     return {
         bundlesInspected: outputs.built.length,
         bundlesExpected: outputs.expected,
+        bundlesInPlace: outputs.inPlace,
         bundlesMissing: outputs.missing,
         issues,
     };
@@ -603,6 +621,9 @@ function missingBundlesFinding(crawl) {
  * `success` beside `bundlesInspected: 1`. The crawl now also carries what it
  * should have found, and the document publishes both counts.
  *
+ * One zero IS a verdict: nothing expected because every discovered skill is in
+ * place (`bundlesInPlace > 0`). Zero discovered skills stays refused.
+ *
  * Derived here, in the one function that produces this phase's document, and
  * not in the command body, so no path through the orchestrator can publish
  * `status: success` beside `bundlesInspected: 0` or beside a non-empty
@@ -616,11 +637,12 @@ function missingBundlesFinding(crawl) {
  * Pure, and exported so the refusal is pinned without a project on disk.
  */
 export function buildPackagedContentPhase(crawl) {
-    const { bundlesInspected, bundlesExpected, bundlesMissing, issues: found } = crawl;
+    const { bundlesInspected, bundlesExpected, bundlesInPlace, bundlesMissing, issues: found } = crawl;
     const missing = missingBundlesFinding(crawl);
+    const accountedFor = bundlesExpected === 0 ? bundlesInspected + bundlesInPlace : bundlesInspected;
     const issues = [
         ...missing,
-        ...nothingCheckedFinding(bundlesInspected, [...missing, ...found], () => 'The packaged-content phase inspected 0 built skill bundles, so this phase is not a'
+        ...nothingCheckedFinding(accountedFor, [...missing, ...found], () => 'The packaged-content phase inspected 0 built skill bundles, so this phase is not a'
             + ' verdict: nothing was crawled for files that must not ship, and the document reads'
             + ' the same as a run over clean bundles. Either `vat build` has not run (or wrote'
             + ' somewhere other than dist/), or `skills.include` in vibe-agent-toolkit.config.yaml'
@@ -634,6 +656,7 @@ export function buildPackagedContentPhase(crawl) {
         // The denominator, beside the counts it qualifies — and what it should have been.
         bundlesInspected,
         bundlesExpected,
+        bundlesInPlace,
         bundlesMissing,
         issueCounts: countBySeverity(issues),
         issues: issues.map(toPublishedIssue),
@@ -675,12 +698,17 @@ function asValidationIssues(issues) {
  * carries, not a parallel computation that can drift from it.
  */
 export function runPackagedContentPhase(projectRoot, discoveredSkills, logger) {
-    const crawl = checkPackagedAgentInstructionFiles(projectRoot, discoveredSkills);
-    const phase = buildPackagedContentPhase(crawl);
+    const phase = buildPackagedContentPhase(checkPackagedAgentInstructionFiles(projectRoot, discoveredSkills));
+    reportPackagedContentPhase(phase, logger);
+    return phase;
+}
+export function reportPackagedContentPhase(phase, logger) {
     if (phase.issues.length > 0) {
         reportPackagedContentIssues(asValidationIssues(phase.issues), logger);
     }
-    return phase;
+    else if (phase.bundlesExpected === 0 && phase.bundlesInspected === 0) {
+        logger.info(`\n▶ Phase: ${PACKAGED_CONTENT} — nothing to inspect: all ${phase.bundlesInPlace} discovered skill(s) are in place (publish: false)`);
+    }
 }
 /**
  * Run the in-process consistency check phase and record its outcome.
@@ -731,13 +759,15 @@ async function verifyTopLevelCommand(options, command) {
     // with "no vibe-agent-toolkit.config.yaml found" would diagnose the wrong
     // problem for anyone running the old invocation outside a project.
     rejectRetiredOnly(options.only, COMMAND_NAME, VERIFY_FULL_RUN_SECONDS);
-    // Spec §7: `vat verify` requires a projectRoot.
-    const projectRoot = requireProjectRoot(process.cwd(), COMMAND_NAME);
     const { logger, startTime } = createPhaseContext(options.debug);
     try {
         // Inside the try, deliberately: phase selection used to throw from out here
         // (on an unroutable `--only`), so the user got a raw Node stack trace and
-        // zero bytes of the structured document a scripted caller parses.
+        // zero bytes of the structured document a scripted caller parses — and so
+        // did "no project here", at Node's default exit 1, which the contract reads
+        // as FINDINGS.
+        // Spec §7: `vat verify` requires a projectRoot.
+        const projectRoot = requireProjectRoot(process.cwd(), COMMAND_NAME);
         const { config, error: configError } = loadConfigTolerant(projectRoot);
         const phases = applyPhaseSelection(selectVerifyPhases(config, configError, options.verbose), logger, startTime);
         // Announced from the same list the in-process gates below read, so the

package/dist/commands/verify.js.map

@@ -1 +1 @@
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package/dist/index.d.ts

@@ -8,5 +8,4 @@ export { version, getVersionString, type VersionContext } from './version.js';
 export { createLogger, type Logger, type LoggerOptions } from './utils/logger.js';
 export { writeYamlOutput, writeTestFormatError, writeStdoutSync, } from './utils/output.js';
 export { loadConfig } from './utils/config-loader.js';
-export { ProjectConfigSchema, type ProjectConfig, type ResourcesConfig, type CollectionConfig as ResourceCollection, } from '@vibe-agent-toolkit/resources';
 //# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAGH,OAAO,EAAE,OAAO,EAAE,gBAAgB,EAAE,KAAK,cAAc,EAAE,MAAM,cAAc,CAAC;AAG9E,OAAO,EAAE,YAAY,EAAE,KAAK,MAAM,EAAE,KAAK,aAAa,EAAE,MAAM,mBAAmB,CAAC;AAOlF,OAAO,EACL,eAAe,EACf,oBAAoB,EACpB,eAAe,GAChB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC"}

package/dist/index.js

@@ -16,5 +16,9 @@ export { createLogger } from './utils/logger.js';
 // it here.
 export { writeYamlOutput, writeTestFormatError, writeStdoutSync, } from './utils/output.js';
 export { loadConfig } from './utils/config-loader.js';
-export { ProjectConfigSchema, } from '@vibe-agent-toolkit/resources';
+// `ProjectConfigSchema`, `ProjectConfig`, `ResourcesConfig` and `CollectionConfig`
+// are `@vibe-agent-toolkit/resources`' API and are imported from there. They were
+// re-exported here (one under an alias) — the exact "re-export types for
+// convenience" the pre-1.0 policy forbids, on the one barrel adopters import
+// for programmatic use.
 //# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AAAA;;;;;GAKG;AAEH,4CAA4C;AAC5C,OAAO,EAAE,OAAO,EAAE,gBAAgB,EAAuB,MAAM,cAAc,CAAC;AAE9E,mCAAmC;AACnC,OAAO,EAAE,YAAY,EAAmC,MAAM,mBAAmB,CAAC;AAClF,+EAA+E;AAC/E,iFAAiF;AACjF,gFAAgF;AAChF,+EAA+E;AAC/E,iFAAiF;AACjF,WAAW;AACX,OAAO,EACL,eAAe,EACf,oBAAoB,EACpB,eAAe,GAChB,MAAM,mBAAmB,CAAC;AAC3B,OAAO,EAAE,UAAU,EAAE,MAAM,0BAA0B,CAAC;AACtD,mFAAmF;AACnF,kFAAkF;AAClF,yEAAyE;AACzE,6EAA6E;AAC7E,wBAAwB"}