@vibe-agent-toolkit/cli 0.2.0-rc.1 → 0.2.0-rc.10

package/dist/commands/consistency-check.js

@@ -5,47 +5,37 @@
  * Config.yaml discovery is the SOURCE OF TRUTH for what skills exist.
  * package.json is a SUSPECT being validated, never an input for truth.
  */
-import { readFileSync, existsSync } from 'node:fs';
-import { getPluginSourceDir } from '@vibe-agent-toolkit/agent-skills';
-import { safeExecResult, safePath, toForwardSlash } from '@vibe-agent-toolkit/utils';
+import { existsSync } from 'node:fs';
+import { basename, dirname } from 'node:path';
+import { safePath } from '@vibe-agent-toolkit/utils';
+import { runGit } from '@vibe-agent-toolkit/utils/git';
+import { readPackageJsonOrAbsent } from '../utils/package-json.js';
+import { isSkillPublished, mergeSkillPackagingConfig, publishScope } from '../utils/skill-packaging-config.js';
 // ---------------------------------------------------------------------------
 // Helpers
 // ---------------------------------------------------------------------------
 /**
- * Determine whether a skill is published.
- * `publish` defaults to `true` when not set in skills.config.
+ * A skill's MERGED packaging config — `skills.defaults` under `skills.config.<name>` —
+ * so `skills.defaults.publish` counts here exactly as it does in `vat build` and
+ * `vat verify`. The per-name reader this replaces looked at `skills.config.<name>` alone.
  */
-export function isSkillPublished(skillName, config) {
-    const perSkill = config.skills?.config?.[skillName];
-    // Default to true when publish is not explicitly set
-    if (perSkill?.publish === undefined) {
-        return true;
-    }
-    return perSkill.publish;
+function packagingOf(skillName, config) {
+    return mergeSkillPackagingConfig(config.skills?.defaults, config.skills?.config?.[skillName]);
 }
 /**
  * Read the `vat.skills` array from `package.json` at the given project root.
  * Returns `undefined` when no `package.json` or no `vat.skills` field exists.
  */
 export function readVatSkillsFromPackageJson(projectRoot) {
-    const pkgPath = safePath.join(projectRoot, 'package.json');
-    // eslint-disable-next-line security/detect-non-literal-fs-filename -- pkgPath derived from projectRoot parameter
-    if (!existsSync(pkgPath)) {
-        return undefined;
-    }
-    try {
-        // eslint-disable-next-line security/detect-non-literal-fs-filename -- pkgPath derived from projectRoot parameter
-        const raw = readFileSync(pkgPath, 'utf-8');
-        const pkg = JSON.parse(raw);
-        const vat = pkg['vat'];
-        if (!vat || !Array.isArray(vat['skills'])) {
-            return undefined;
-        }
-        return vat['skills'];
-    }
-    catch {
+    // Absent manifest, or one with no `vat.skills`: nothing declared. A manifest
+    // that is there and cannot be read is NOT "nothing declared" — it used to be,
+    // and the cross-check then verified nothing and said so nowhere.
+    const pkg = readPackageJsonOrAbsent(safePath.join(projectRoot, 'package.json'));
+    const vat = pkg?.['vat'];
+    if (!vat || !Array.isArray(vat['skills'])) {
         return undefined;
     }
+    return vat['skills'];
 }
 /**
  * Match a skill name against a simple glob selector.
@@ -99,42 +89,32 @@ function addMatchingSkills(assigned, pluginSkills, publishedSkillNames) {
     }
 }
 /**
- * Resolve which published skills are assigned to at least one plugin.
+ * Resolve which skills are assigned to at least one plugin.
  *
  * Assignment is additive per plugin:
- * - **Pool path**: `plugin.skills` glob selectors matched against published skill names.
- * - **Source tree-copy path**: any discovered published skill whose `sourcePath` lives
- *   under `<getPluginSourceDir(projectRoot, plugin)>/skills/` is considered assigned,
- *   matched by physical location rather than name selectors.
+ * - **Pool path**: `plugin.skills` glob selectors matched against PUBLISHED skill
+ *   names — a `publish: false` skill is not in the pool, so no selector reaches it.
+ * - **Plugin-local path**: any discovered skill the plugin build packages — its
+ *   `SKILL.md` directory is a location in `pluginLocal` (`indexPluginLocalSkills`:
+ *   git-tracked skill dirs under a plugin's `skills/`) — is assigned by location,
+ *   INDEPENDENT of `publish`: it ships with its plugin either way. A skill merely
+ *   sitting there untracked is not: the plugin build does not ship it.
  *
- * Returns the set of published skill names assigned to at least one plugin.
+ * Returns the set of skill names assigned to at least one plugin.
  */
-export function resolveAssignedSkills(config, discoveredSkills, projectRoot) {
-    const assigned = new Set();
+export function resolveAssignedSkills(config, discoveredSkills, pluginLocal) {
+    const assigned = new Set(discoveredSkills.filter((s) => pluginLocal.locationOf(s.sourcePath) !== undefined).map((s) => s.name));
     const marketplaces = config.claude?.marketplaces;
     if (!marketplaces) {
         return assigned;
     }
     // Compute published names once for pool-selector matching
     const publishedNames = discoveredSkills
-        .filter((s) => isSkillPublished(s.name, config))
+        .filter((s) => isSkillPublished(packagingOf(s.name, config)))
         .map((s) => s.name);
     for (const marketplace of Object.values(marketplaces)) {
         for (const plugin of marketplace.plugins) {
-            // Pool path: existing glob selector matching (unchanged)
             addMatchingSkills(assigned, plugin.skills, publishedNames);
-            // Source tree-copy path: match by physical location under <pluginSourceDir>/skills/
-            // Use a trailing slash to enforce a path-separator boundary and avoid false matches
-            // against sibling directories with a common prefix (e.g. /skills vs /skills-extra).
-            const srcSkillsDir = safePath.join(getPluginSourceDir(projectRoot, plugin), 'skills');
-            const srcSkillsPrefix = `${srcSkillsDir}/`;
-            for (const skill of discoveredSkills) {
-                if (!isSkillPublished(skill.name, config))
-                    continue;
-                if (toForwardSlash(skill.sourcePath).startsWith(srcSkillsPrefix)) {
-                    assigned.add(skill.name);
-                }
-            }
         }
     }
     return assigned;
@@ -214,42 +194,100 @@ function checkUnpublishedSkillInPackageJson(unpublishedNames, vatSkills) {
     }
     return issues;
 }
-function checkPublishedSkillNotInPlugin(publishedNames, config, assignedSkills) {
+/**
+ * The fix for a published skill no plugin ships — saying what is TRUE of this skill.
+ * A skill under a plugin's `skills/` that the plugin build does not package gets the
+ * reason ({@link PluginSkillExclusion}): untracked (`git add` it) or nested inside
+ * another skill's directory (where `git add` changes nothing). Any other skill gets the
+ * two config remedies alone — a "git add" hint on a skill nowhere near a plugin is noise.
+ */
+function notInPluginFix(skill, exclusion, context) {
+    const { name } = skill;
+    const configRemedies = `add "${name}" to a plugin's skills array in vibe-agent-toolkit.config.yaml: claude.marketplaces.<marketplace>.plugins[].skills, or opt out of publishing by setting publish: false in vibe-agent-toolkit.config.yaml: skills.config.${name}.publish: false`;
+    const rel = (dir) => safePath.relative(context.projectRoot, dir);
+    if (exclusion?.kind === 'untracked') {
+        return `"${name}" sits under plugin "${exclusion.pluginName}"'s skills/ directory, but git does not track it, so that plugin's build does not ship it: git add ${rel(exclusion.skillSourceDir)}. Otherwise, ${configRemedies}.`;
+    }
+    if (exclusion?.kind === 'nested') {
+        const { outer } = exclusion;
+        const outerName = context.discovered.find((candidate) => safePath.resolve(dirname(candidate.sourcePath)) === safePath.resolve(outer.skillSourceDir))?.name ?? basename(outer.skillSourceDir);
+        return `"${name}" is nested inside skill "${outerName}" (${rel(outer.skillSourceDir)}) under plugin "${outer.pluginName}"'s skills/ directory, and the plugin build ships only the outermost skill directory, so "${name}" is never packaged as a skill of its own. Move it to its own directory under skills/, or ${configRemedies}.`;
+    }
+    return `Either ${configRemedies}`;
+}
+function checkPublishedSkillNotInPlugin(publishedSkills, config, assignedSkills, context) {
     if (!config.claude?.marketplaces) {
         return [];
     }
-    const issues = [];
-    for (const name of publishedNames) {
-        if (!assignedSkills.has(name)) {
-            issues.push({
-                severity: 'error',
-                code: 'PUBLISHED_SKILL_NOT_IN_PLUGIN',
-                message: `Skill "${name}" is published but not assigned to any plugin in claude.marketplaces.`,
-                fix: `Either add "${name}" to a plugin's skills array in vibe-agent-toolkit.config.yaml: claude.marketplaces.<marketplace>.plugins[].skills, or opt out of publishing by setting publish: false in vibe-agent-toolkit.config.yaml: skills.config.${name}.publish: false`,
-            });
+    return publishedSkills.filter((skill) => !assignedSkills.has(skill.name)).map((skill) => ({
+        severity: 'error',
+        code: 'PUBLISHED_SKILL_NOT_IN_PLUGIN',
+        message: `Skill "${skill.name}" is published but not assigned to any plugin in claude.marketplaces.`,
+        fix: notInPluginFix(skill, context.pluginLocal.exclusionOf(skill.sourcePath), context),
+    }));
+}
+/** The key of a plugin as listed in one marketplace. */
+function pluginKey(marketplaceName, pluginName) {
+    return `${marketplaceName}\0${pluginName}`;
+}
+/** Every discovered skill's name, under each plugin (per marketplace listing) whose build ships it. */
+function pluginLocalNamesByPlugin(discoveredSkills, pluginLocal) {
+    const byPlugin = new Map();
+    for (const skill of discoveredSkills) {
+        for (const loc of pluginLocal.locationsOf(skill.sourcePath)) {
+            const key = pluginKey(loc.marketplaceName, loc.pluginName);
+            byPlugin.set(key, (byPlugin.get(key) ?? new Set()).add(skill.name));
         }
     }
-    return issues;
+    return byPlugin;
 }
 /**
- * Check a single plugin's skill selectors against discovered skill names.
+ * A selector matching no skill that ships FOR THIS PLUGIN selects nothing: the claude
+ * phase picks from `dist/skills`, which carries only published skills, so the plugin
+ * would silently ship without them. Such a match is either in-place (used from the repo)
+ * or `publish: false` and plugin-local to ANOTHER plugin — which ships it, and only it.
  */
-function checkPluginSelectors(pluginSkills, pluginName, marketplaceName, discoveredNames) {
+function checkPluginSelectors(pluginSkills, pluginName, marketplaceName, names) {
     const issues = [];
+    const where = `vibe-agent-toolkit.config.yaml: claude.marketplaces.${marketplaceName}.plugins (plugin "${pluginName}")`;
+    const localHere = names.pluginLocalByPlugin.get(pluginKey(marketplaceName, pluginName)) ?? new Set();
+    const code = 'PLUGIN_REFERENCES_UNKNOWN_SKILL';
+    const subject = (selector) => `Plugin "${pluginName}" in marketplace "${marketplaceName}" references skill selector "${selector}"`;
     for (const selector of pluginSkills) {
-        const matchesAny = [...discoveredNames].some((name) => matchesSimpleGlob(name, selector));
-        if (!matchesAny) {
+        const matching = [...names.discovered].filter((name) => matchesSimpleGlob(name, selector));
+        if (matching.length === 0) {
             issues.push({
                 severity: 'error',
-                code: 'PLUGIN_REFERENCES_UNKNOWN_SKILL',
-                message: `Plugin "${pluginName}" in marketplace "${marketplaceName}" references skill selector "${selector}" which matches no discovered skill.`,
-                fix: `Check for typos in vibe-agent-toolkit.config.yaml: claude.marketplaces.${marketplaceName}.plugins (plugin "${pluginName}"). The selector must match at least one discovered SKILL.md name.`,
+                code,
+                message: `${subject(selector)} which matches no discovered skill.`,
+                fix: `Check for typos in ${where}. The selector must match at least one discovered SKILL.md name.`,
+            });
+        }
+        else if (!matching.some((name) => names.published.has(name) || localHere.has(name))) {
+            const owners = otherOwners(matching, names.pluginLocalByPlugin).map((owner) => JSON.stringify(owner)).join(', ');
+            const matches = owners === ''
+                ? 'which matches only in-place skills (publish: false) — never built into dist/skills'
+                : `which matches only publish: false skills plugin-local to ${owners} — shipped by that plugin alone, never built into dist/skills`;
+            issues.push({
+                severity: 'error',
+                code,
+                message: `${subject(selector)}, ${matches}, so the plugin would ship without them.`,
+                fix: `Set skills.config.<name>.publish: true for the skill(s) this plugin ships, or remove the selector from ${where}.`,
             });
         }
     }
     return issues;
 }
-function checkPluginReferencesUnknownSkill(discoveredNames, config) {
+/** The plugins (by name, sorted, unique) whose build ships any of `names`. */
+function otherOwners(names, pluginLocalByPlugin) {
+    const owners = new Set();
+    for (const [key, local] of pluginLocalByPlugin) {
+        if (names.some((name) => local.has(name)))
+            owners.add(key.slice(key.indexOf('\0') + 1));
+    }
+    return [...owners].sort((a, b) => a.localeCompare(b));
+}
+function checkPluginReferencesUnknownSkill(names, config) {
     const marketplaces = config.claude?.marketplaces;
     if (!marketplaces) {
         return [];
@@ -260,41 +298,34 @@ function checkPluginReferencesUnknownSkill(discoveredNames, config) {
             if (plugin.skills === '*') {
                 continue;
             }
-            issues.push(...checkPluginSelectors(plugin.skills, plugin.name, marketplaceName, discoveredNames));
+            issues.push(...checkPluginSelectors(plugin.skills, plugin.name, marketplaceName, names));
         }
     }
     return issues;
 }
-function checkSkillUnpublished(unpublishedNames) {
-    return unpublishedNames.map((name) => ({
+/**
+ * One info per IN-PLACE skill (`publishScope` says `in-place`). A plugin-only skill is
+ * not passed here: it still ships with its plugin, so "in-place" would be a false
+ * statement about it.
+ */
+function checkSkillUnpublished(inPlaceNames) {
+    return inPlaceNames.map((name) => ({
         severity: 'info',
         code: 'SKILL_UNPUBLISHED',
-        message: `Skill "${name}" is marked publish: false — not distributed.`,
-        fix: `To publish this skill, remove the publish: false setting in vibe-agent-toolkit.config.yaml: skills.config.${name}.publish.`,
+        message: `Skill "${name}" is publish: false — an in-place skill: validated at source, never bundled into dist/skills, never expected by vat verify.`,
+        fix: `To distribute this skill through the pool, set publish: true in vibe-agent-toolkit.config.yaml: skills.config.${name}.publish (or drop the false under skills.defaults).`,
     }));
 }
 /**
  * Read the `files` array from a package's `package.json`.
- * Returns an empty array when the file is absent, unreadable, or has no `files` field.
+ * Returns an empty array when the file is absent or has no `files` field. A
+ * manifest that is there and cannot be read throws — an empty allowlist is a
+ * finding ("vendor/ is not shipped"), and it must not be minted by a parse error.
  */
 function readPackageJsonFilesAllowlist(packageDir) {
-    const pkgPath = safePath.join(packageDir, 'package.json');
-    // eslint-disable-next-line security/detect-non-literal-fs-filename -- pkgPath derived from trusted packageDir parameter
-    if (!existsSync(pkgPath)) {
-        return [];
-    }
-    try {
-        // eslint-disable-next-line security/detect-non-literal-fs-filename -- pkgPath derived from trusted packageDir parameter
-        const raw = readFileSync(pkgPath, 'utf-8');
-        const pkg = JSON.parse(raw);
-        if (!Array.isArray(pkg['files'])) {
-            return [];
-        }
-        return pkg['files'];
-    }
-    catch {
-        return [];
-    }
+    const pkg = readPackageJsonOrAbsent(safePath.join(packageDir, 'package.json'));
+    const files = pkg?.['files'];
+    return Array.isArray(files) ? files : [];
 }
 /**
  * Check vendored skill-creator licensing artifacts for the agent-skills package.
@@ -311,7 +342,6 @@ function readPackageJsonFilesAllowlist(packageDir) {
  */
 function checkVendoredLicensing(projectRoot) {
     const agentSkillsDir = safePath.join(projectRoot, 'packages/agent-skills');
-    // eslint-disable-next-line security/detect-non-literal-fs-filename -- agentSkillsDir derived from trusted projectRoot
     if (!existsSync(agentSkillsDir)) {
         return []; // not in this monorepo — skip
     }
@@ -344,12 +374,10 @@ export function assertVendoredLicensingShipped(packageDir, filesAllowlist) {
     const licensePath = safePath.join(packageDir, 'vendor/skill-creator/LICENSE.txt');
     const attributionPath = safePath.join(packageDir, 'vendor/skill-creator/ATTRIBUTION.md');
     // (1) LICENSE.txt present on disk
-    // eslint-disable-next-line security/detect-non-literal-fs-filename -- packageDir is a trusted project root parameter
     if (!existsSync(licensePath)) {
         problems.push('vendor/skill-creator/LICENSE.txt is missing — Apache-2.0 requires distributing the license with the code. Add the LICENSE.txt from the upstream skill-creator repository.');
     }
     // (2) ATTRIBUTION.md present on disk
-    // eslint-disable-next-line security/detect-non-literal-fs-filename -- packageDir is a trusted project root parameter
     if (!existsSync(attributionPath)) {
         problems.push('vendor/skill-creator/ATTRIBUTION.md is missing — attribution file must document the upstream source, pinned commit, and Apache-2.0 §4(b) modifications list.');
     }
@@ -359,11 +387,10 @@ export function assertVendoredLicensingShipped(packageDir, filesAllowlist) {
         problems.push('"vendor/" is not listed in the package.json files allowlist — vendored LICENSE.txt and ATTRIBUTION.md will not ship in the npm tarball. Add "vendor/" to the files array in package.json.');
     }
     // (4) LICENSE.txt not gitignored (best-effort; skip if git is unavailable)
-    // eslint-disable-next-line security/detect-non-literal-fs-filename -- licensePath is derived from trusted packageDir parameter
     if (existsSync(licensePath)) {
-        const gitResult = safeExecResult('git', ['check-ignore', '--quiet', licensePath], { cwd: packageDir, encoding: 'utf8' });
+        const gitResult = runGit(['check-ignore', '--quiet', licensePath], { cwd: packageDir });
         // git check-ignore exits 0 if the path IS ignored, 1 if not ignored, error(-1) if git unavailable
-        if (gitResult.success) {
+        if (gitResult.ok) {
             problems.push('vendor/skill-creator/LICENSE.txt is gitignored — the LICENSE.txt must be committed so it ships with the package. Remove the gitignore rule covering this path.');
         }
     }
@@ -378,26 +405,45 @@ export function assertVendoredLicensingShipped(packageDir, filesAllowlist) {
  * @param discoveredSkills - Skills found via config.yaml glob discovery (source of truth)
  * @param config - Parsed project configuration
  * @param projectRoot - Project root directory (for reading package.json)
+ * @param pluginLocal - The run's plugin-local index (`indexPluginLocalSkills(config, projectRoot)`).
+ *   Required, so the one index `vat verify` builds per run serves every phase: an optional
+ *   parameter would let a call site quietly crawl every plugin again.
  * @returns Consistency check result with issues and summary
  */
-export function runConsistencyChecks(discoveredSkills, config, projectRoot) {
+export function runConsistencyChecks(discoveredSkills, config, projectRoot, pluginLocal) {
     const discoveredNames = new Set(discoveredSkills.map((s) => s.name));
-    const publishedNames = [];
+    // Classified per discovered SKILL (by its source directory), not per name: a
+    // repo-only skill may share its declared name with a plugin-local one.
+    const publishedSkills = [];
     const unpublishedNames = [];
+    const inPlaceNames = [];
     for (const s of discoveredSkills) {
-        (isSkillPublished(s.name, config) ? publishedNames : unpublishedNames).push(s.name);
-    }
+        const scope = publishScope(s, packagingOf(s.name, config), pluginLocal);
+        if (scope === 'pool')
+            publishedSkills.push(s);
+        else
+            unpublishedNames.push(s.name);
+        if (scope === 'in-place')
+            inPlaceNames.push(s.name);
+    }
+    const publishedNames = publishedSkills.map((s) => s.name);
     const vatSkills = readVatSkillsFromPackageJson(projectRoot);
-    const assignedSkills = resolveAssignedSkills(config, discoveredSkills, projectRoot);
+    const assignedSkills = resolveAssignedSkills(config, discoveredSkills, pluginLocal);
+    const selectorNames = {
+        discovered: discoveredNames,
+        published: new Set(publishedNames),
+        pluginLocalByPlugin: pluginLocalNamesByPlugin(discoveredSkills, pluginLocal),
+    };
+    const fixContext = { projectRoot, discovered: discoveredSkills, pluginLocal };
     // Run checks in specified order
     const issues = [
         ...checkConfigReferencesUnknownSkill(discoveredNames, config),
         ...checkPublishedSkillNotInPackageJson(publishedNames, vatSkills),
         ...checkPackageJsonListsUnknownSkill(discoveredNames, vatSkills),
         ...checkUnpublishedSkillInPackageJson(unpublishedNames, vatSkills),
-        ...checkPublishedSkillNotInPlugin(publishedNames, config, assignedSkills),
-        ...checkPluginReferencesUnknownSkill(discoveredNames, config),
-        ...checkSkillUnpublished(unpublishedNames),
+        ...checkPublishedSkillNotInPlugin(publishedSkills, config, assignedSkills, fixContext),
+        ...checkPluginReferencesUnknownSkill(selectorNames, config),
+        ...checkSkillUnpublished(inPlaceNames),
         ...checkVendoredLicensing(projectRoot),
     ];
     return {

package/dist/commands/consistency-check.js.map

@@ -1 +1 @@
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package/dist/commands/corpus/index.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/commands/corpus/index.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAIpC,wBAAgB,mBAAmB,IAAI,OAAO,CA0D7C"}
+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../../../src/commands/corpus/index.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAIpC,wBAAgB,mBAAmB,IAAI,OAAO,CA6D7C"}

package/dist/commands/corpus/index.js

@@ -37,6 +37,9 @@ Output:
   <--out>/<UTC-date>-<vat-short-sha>/
     summary.yaml          # index: per-plugin status + totals
     <name>-audit.yaml     # full audit output per plugin
+                          #   results: one entry per audited file; issues: run-level
+                          #   findings. An audit over 0 files is audit.status: error
+                          #   with one RESOURCE_CHECK_BROKEN, never a clean row.
     <name>-review.md      # full skill-review output (only with --with-review)
 
 Exit codes:

package/dist/commands/corpus/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/commands/corpus/index.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAEpC,OAAO,EAAE,iBAAiB,EAA0B,MAAM,WAAW,CAAC;AAEtE,MAAM,UAAU,mBAAmB;IACjC,MAAM,MAAM,GAAG,IAAI,OAAO,CAAC,QAAQ,CAAC,CAAC;IAErC,MAAM;SACH,WAAW,CAAC,uFAAuF,CAAC;SACpG,WAAW,CAAC,KAAK,CAAC,CAAC;IAEtB,MAAM;SACH,OAAO,CAAC,kBAAkB,CAAC;SAC3B,WAAW,CAAC,qEAAqE,CAAC;SAClF,QAAQ,CAAC,aAAa,EAAE,+CAA+C,CAAC;SACxE,cAAc,CAAC,aAAa,EAAE,wEAAwE,CAAC;SACvG,MAAM,CAAC,eAAe,EAAE,uEAAuE,CAAC;SAChG,MAAM,CAAC,SAAS,EAAE,mDAAmD,CAAC;SACtE,MAAM,CAAC,KAAK,WAA0B,QAA4B;QACjE,MAAM,iBAAiB,CAAC,QAAQ,EAAE,IAAI,CAAC,eAAe,EAAuB,CAAC,CAAC;IACjF,CAAC,CAAC;SACD,WAAW,CACV,OAAO,EACP;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAmCL,CACI,CAAC;IAEJ,OAAO,MAAM,CAAC;AAChB,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/commands/corpus/index.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAEpC,OAAO,EAAE,iBAAiB,EAA0B,MAAM,WAAW,CAAC;AAEtE,MAAM,UAAU,mBAAmB;IACjC,MAAM,MAAM,GAAG,IAAI,OAAO,CAAC,QAAQ,CAAC,CAAC;IAErC,MAAM;SACH,WAAW,CAAC,uFAAuF,CAAC;SACpG,WAAW,CAAC,KAAK,CAAC,CAAC;IAEtB,MAAM;SACH,OAAO,CAAC,kBAAkB,CAAC;SAC3B,WAAW,CAAC,qEAAqE,CAAC;SAClF,QAAQ,CAAC,aAAa,EAAE,+CAA+C,CAAC;SACxE,cAAc,CAAC,aAAa,EAAE,wEAAwE,CAAC;SACvG,MAAM,CAAC,eAAe,EAAE,uEAAuE,CAAC;SAChG,MAAM,CAAC,SAAS,EAAE,mDAAmD,CAAC;SACtE,MAAM,CAAC,KAAK,WAA0B,QAA4B;QACjE,MAAM,iBAAiB,CAAC,QAAQ,EAAE,IAAI,CAAC,eAAe,EAAuB,CAAC,CAAC;IACjF,CAAC,CAAC;SACD,WAAW,CACV,OAAO,EACP;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAsCL,CACI,CAAC;IAEJ,OAAO,MAAM,CAAC;AAChB,CAAC"}

package/dist/commands/corpus/report.d.ts

@@ -7,7 +7,7 @@
  * per-plugin rows so callers can pass raw rows and let this module
  * compute aggregates.
  */
-import type { SeverityCounts } from '@vibe-agent-toolkit/agent-schema';
+import type { SeverityCounts } from '@vibe-agent-toolkit/schema';
 export type AuditStatus = 'success' | 'warning' | 'error' | 'unloadable';
 export type ReviewStatus = 'ok' | 'error' | 'skipped';
 /**
@@ -54,7 +54,6 @@ export interface PluginRow {
     review: ReviewOutcome;
 }
 export interface RunReport {
-    schema_version: 1;
     generated_at: string;
     vat_version: string;
     vat_commit: string;

package/dist/commands/corpus/report.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"report.d.ts","sourceRoot":"","sources":["../../../src/commands/corpus/report.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAIH,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,4BAA4B,CAAC;AAIjE,MAAM,MAAM,WAAW,GAAG,SAAS,GAAG,SAAS,GAAG,OAAO,GAAG,YAAY,CAAC;AACzE,MAAM,MAAM,YAAY,GAAG,IAAI,GAAG,OAAO,GAAG,SAAS,CAAC;AAEtD;;;;;;GAMG;AACH,MAAM,WAAW,YAAa,SAAQ,cAAc;IAClD,aAAa,EAAE,MAAM,CAAC;CACvB;AAED,MAAM,WAAW,YAAY;IAC3B,MAAM,EAAE,WAAW,CAAC;IACpB,WAAW,EAAE,MAAM,CAAC;IACpB,OAAO,CAAC,EAAE,YAAY,CAAC;IACvB,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAED;;;;;GAKG;AACH,MAAM,WAAW,aAAa;IAC5B,QAAQ,EAAE,MAAM,CAAC;IACjB,MAAM,EAAE,MAAM,CAAC;IACf,cAAc,EAAE,MAAM,CAAC;CACxB;AAED,MAAM,WAAW,aAAa;IAC5B,MAAM,EAAE,YAAY,CAAC;IACrB,WAAW,EAAE,MAAM,CAAC;IACpB,OAAO,CAAC,EAAE,aAAa,CAAC;IACxB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,KAAK,CAAC,EAAE,MAAM,CAAC;CAChB;AAED,MAAM,WAAW,SAAS;IACxB,MAAM,EAAE,MAAM,CAAC;IACf,IAAI,EAAE,MAAM,CAAC;IACb,kBAAkB,EAAE,OAAO,CAAC;IAC5B,KAAK,EAAE,YAAY,CAAC;IACpB,MAAM,EAAE,aAAa,CAAC;CACvB;AAED,MAAM,WAAW,SAAS;IACxB,YAAY,EAAE,MAAM,CAAC;IACrB,WAAW,EAAE,MAAM,CAAC;IACpB,UAAU,EAAE,MAAM,CAAC;IACnB,SAAS,EAAE,MAAM,CAAC;IAClB,KAAK,EAAE;QAAE,WAAW,EAAE,OAAO,CAAC;QAAC,KAAK,EAAE,OAAO,CAAA;KAAE,CAAC;IAChD,OAAO,EAAE,SAAS,EAAE,CAAC;CACtB;AAED,MAAM,WAAW,SAAS;IACxB,OAAO,EAAE,MAAM,CAAC;IAChB,WAAW,EAAE,MAAM,CAAC;IACpB,aAAa,EAAE,MAAM,CAAC;IACtB,WAAW,EAAE,MAAM,CAAC;IACpB,UAAU,EAAE,MAAM,CAAC;IACnB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,YAAY,CAAC,EAAE,MAAM,CAAC;CACvB;AAED;;GAEG;AACH,wBAAgB,aAAa,CAAC,MAAM,EAAE,SAAS,GAAG,SAAS,CAmC1D;AAED;;;GAGG;AACH,wBAAgB,gBAAgB,CAAC,MAAM,EAAE,SAAS,GAAG,MAAM,CAG1D;AAED;;;;;GAKG;AACH,wBAAsB,cAAc,CAAC,MAAM,EAAE,SAAS,EAAE,MAAM,EAAE,MAAM,GAAG,OAAO,CAAC,MAAM,CAAC,CAoBvF"}

package/dist/commands/corpus/report.js

@@ -63,11 +63,10 @@ export function runDirectoryName(report) {
  */
 export async function writeRunReport(report, outDir) {
     const runDir = safePath.join(outDir, runDirectoryName(report));
-    // eslint-disable-next-line local/no-fs-mkdirSync, security/detect-non-literal-fs-filename -- the corpus output dir is caller-supplied; mkdir-recursive is the right call here
+    // eslint-disable-next-line local/no-fs-mkdirSync -- the corpus output dir is caller-supplied; mkdir-recursive is the right call here
     mkdirSync(runDir, { recursive: true });
     const totals = computeTotals(report);
     const dump = {
-        schema_version: report.schema_version,
         generated_at: report.generated_at,
         vat_version: report.vat_version,
         vat_commit: report.vat_commit,
@@ -77,7 +76,6 @@ export async function writeRunReport(report, outDir) {
         totals,
     };
     const summaryPath = safePath.join(runDir, 'summary.yaml');
-    // eslint-disable-next-line security/detect-non-literal-fs-filename -- summaryPath composed under our run dir
     writeFileSync(summaryPath, yaml.stringify(dump, { lineWidth: 0, aliasDuplicateObjects: false }), 'utf-8');
     return runDir;
 }

package/dist/commands/corpus/report.js.map

@@ -1 +1 @@
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+{"version":3,"file":"report.js","sourceRoot":"","sources":["../../../src/commands/corpus/report.ts"],"names":[],"mappings":"AAAA;;;;;;;;GAQG;AAEH,OAAO,EAAE,SAAS,EAAE,aAAa,EAAE,MAAM,SAAS,CAAC;AAGnD,OAAO,EAAE,QAAQ,EAAE,MAAM,2BAA2B,CAAC;AACrD,OAAO,KAAK,IAAI,MAAM,MAAM,CAAC;AAwE7B;;GAEG;AACH,MAAM,UAAU,aAAa,CAAC,MAAiB;IAC7C,MAAM,MAAM,GAAc;QACxB,OAAO,EAAE,MAAM,CAAC,OAAO,CAAC,MAAM;QAC9B,WAAW,EAAE,CAAC;QACd,aAAa,EAAE,CAAC;QAChB,WAAW,EAAE,CAAC;QACd,UAAU,EAAE,CAAC;KACd,CAAC;IAEF,KAAK,MAAM,GAAG,IAAI,MAAM,CAAC,OAAO,EAAE,CAAC;QACjC,QAAQ,GAAG,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC;YACzB,KAAK,SAAS,CAAC,CAAC,CAAC;gBACf,MAAM,CAAC,WAAW,IAAI,CAAC,CAAC;gBACxB,MAAM;YACR,CAAC;YACD,KAAK,SAAS,CAAC,CAAC,CAAC;gBACf,MAAM,CAAC,aAAa,IAAI,CAAC,CAAC;gBAC1B,MAAM;YACR,CAAC;YACD,KAAK,OAAO,CAAC,CAAC,CAAC;gBACb,MAAM,CAAC,WAAW,IAAI,CAAC,CAAC;gBACxB,MAAM;YACR,CAAC;YACD,KAAK,YAAY,CAAC,CAAC,CAAC;gBAClB,MAAM,CAAC,UAAU,IAAI,CAAC,CAAC;gBACvB,MAAM;YACR,CAAC;QACH,CAAC;IACH,CAAC;IAED,IAAI,MAAM,CAAC,KAAK,CAAC,WAAW,EAAE,CAAC;QAC7B,MAAM,CAAC,QAAQ,GAAG,MAAM,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,MAAM,CAAC,MAAM,KAAK,SAAS,CAAC,CAAC,MAAM,CAAC;QACrF,MAAM,CAAC,YAAY,GAAG,MAAM,CAAC,OAAO,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,MAAM,CAAC,MAAM,KAAK,OAAO,CAAC,CAAC,MAAM,CAAC;IAAE,CAAC;IAE5F,OAAO,MAAM,CAAC;AAChB,CAAC;AAED;;;GAGG;AACH,MAAM,UAAU,gBAAgB,CAAC,MAAiB;IAChD,MAAM,QAAQ,GAAG,MAAM,CAAC,YAAY,CAAC,KAAK,CAAC,CAAC,EAAE,EAAE,CAAC,CAAC,CAAC,eAAe;IAClE,OAAO,GAAG,QAAQ,IAAI,MAAM,CAAC,UAAU,EAAE,CAAC;AAC5C,CAAC;AAED;;;;;GAKG;AACH,MAAM,CAAC,KAAK,UAAU,cAAc,CAAC,MAAiB,EAAE,MAAc;IACpE,MAAM,MAAM,GAAG,QAAQ,CAAC,IAAI,CAAC,MAAM,EAAE,gBAAgB,CAAC,MAAM,CAAC,CAAC,CAAC;IAC/D,qIAAqI;IACrI,SAAS,CAAC,MAAM,EAAE,EAAE,SAAS,EAAE,IAAI,EAAE,CAAC,CAAC;IAEvC,MAAM,MAAM,GAAG,aAAa,CAAC,MAAM,CAAC,CAAC;IACrC,MAAM,IAAI,GAAG;QACX,YAAY,EAAE,MAAM,CAAC,YAAY;QACjC,WAAW,EAAE,MAAM,CAAC,WAAW;QAC/B,UAAU,EAAE,MAAM,CAAC,UAAU;QAC7B,SAAS,EAAE,MAAM,CAAC,SAAS;QAC3B,KAAK,EAAE,MAAM,CAAC,KAAK;QACnB,OAAO,EAAE,MAAM,CAAC,OAAO;QACvB,MAAM;KACP,CAAC;IAEF,MAAM,WAAW,GAAG,QAAQ,CAAC,IAAI,CAAC,MAAM,EAAE,cAAc,CAAC,CAAC;IAC1D,aAAa,CAAC,WAAW,EAAE,IAAI,CAAC,SAAS,CAAC,IAAI,EAAE,EAAE,SAAS,EAAE,CAAC,EAAE,qBAAqB,EAAE,KAAK,EAAE,CAAC,EAAE,OAAO,CAAC,CAAC;IAE1G,OAAO,MAAM,CAAC;AAChB,CAAC"}

package/dist/commands/corpus/runner.d.ts

@@ -10,13 +10,55 @@
  * URL handling clones via Layer 1's `withClonedRepo` helper. Validation
  * overlay (Task 5) is added on top of this base.
  */
-import type { PluginRow, ReviewOutcome } from './report.js';
+import type { ValidationResult } from '@vibe-agent-toolkit/agent-skills';
+import { type ValidationIssue } from '@vibe-agent-toolkit/schema';
+import type { DirectoryRefusal } from '@vibe-agent-toolkit/utils/crawl';
+import type { AuditOutcome, PluginRow, ReviewOutcome } from './report.js';
 import type { PluginEntry } from './seed.js';
 export interface RunnerOptions {
     runDir: string;
     withReview: boolean;
     debug: boolean;
 }
+/** The per-plugin audit document: one result per file, plus the run-level findings that belong to none. */
+export interface AuditDocument {
+    results: readonly ValidationResult[];
+    /** Present only when non-empty, so a clean run's document keeps its shape. */
+    issues?: readonly ValidationIssue[];
+}
+/**
+ * Derive one plugin's audit row and its document from the per-file results.
+ *
+ * 🚨 **An audit over zero files is an ERROR, not "an empty tree audits
+ * cleanly".** `summarizeRun` over zero results gives `files_scanned: 0` and
+ * zero findings, and zero findings is `success` — so a source that resolved to
+ * a tree with nothing to audit (a wrong subdirectory, a clone whose default
+ * branch holds no skill, an excluded tree) wrote the same `summary.yaml` row as
+ * a clean plugin. The review lane on the identical fixture already answered
+ * `error` ("No SKILL.md files found"); this is the same question one lane
+ * over, and it now gets the same answer, through the shared mechanism in
+ * `run-integrity.ts`: one non-overridable `RESOURCE_CHECK_BROKEN` at `error`,
+ * counted in the row's `errors` and `findings_emitted`, carried in the document
+ * under `issues` beside the (empty) per-file results.
+ *
+ * `unloadable` is deliberately NOT the status here. Unloadable means the audit
+ * could not run — a missing path, a failed clone. This audit ran, and found no
+ * file to run over; the difference is the difference between "no verdict
+ * possible" and "this verdict is vacuous", and `computeTotals` counts them
+ * apart.
+ *
+ * Pure, and exported for that reason: the runner's loop clones, writes and
+ * catches, and the refusal has to be pinned without any of that.
+ *
+ * @param results - One validation result per audited file
+ * @param durationMs - The row's measured duration
+ * @param outputPath - Where the document is written, relative to the run dir
+ * @returns The row's audit outcome and the document to write for it
+ */
+export declare function buildAuditOutcome(results: readonly ValidationResult[], durationMs: number, outputPath: string): {
+    audit: AuditOutcome;
+    document: AuditDocument;
+};
 /**
  * Run audit + optional review against one plugin entry.
  */
@@ -26,6 +68,21 @@ export interface SkillReviewSection {
     ok: boolean;
     body: string;
 }
+/**
+ * One failed section per directory the review scan could not list.
+ *
+ * The review lane's population is what `scan` enumerates; a directory it could
+ * not enter is a set of skills that were never reviewed, and a review.md that
+ * omits them reads as one that covered the plugin. Filing the gap on the
+ * existing per-skill channel — `ok: false`, keyed by the directory — is what
+ * makes `buildReviewOutcome` grade the run `error` and the aggregate name the
+ * subtree, without inventing a second channel the report would have to learn.
+ *
+ * @param unreadable - What `ScanSummary.unreadable` carried
+ * @param scanPath - The plugin root every section is keyed relative to
+ * @returns Sections in the order the refusals were met
+ */
+export declare function unlistedDirectorySections(unreadable: readonly DirectoryRefusal[], scanPath: string): SkillReviewSection[];
 /**
  * Derive one plugin's `ReviewOutcome` from its per-skill sections.
  *

package/dist/commands/corpus/runner.d.ts.map

@@ -1 +1 @@
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