@vibe-agent-toolkit/cli 0.1.37 → 0.1.39-rc.1

package/dist/commands/resources/index.js

@@ -40,6 +40,12 @@ Output Fields:
   collections: Per-collection resource counts (resourceCount)
   files: (only with --verbose) Array with per-file details
 
+Requirements:
+  projectRoot: optional (falls back to cwd with a warning)
+  config:      optional (uses defaults if absent)
+
+  See docs/concepts/roots-and-config.md for terminology.
+
 Examples:
   $ vat resources scan docs/                    # Scan all *.md under docs/
   $ vat resources scan --verbose                # Include full file details
@@ -99,7 +105,7 @@ Output Fields (success):
 
 Output Fields (failure):
   status, filesScanned, filesWithErrors, errorsFound, durationSecs
-  errorSummary: Count of each error type (broken_file, broken_anchor, etc.)
+  errorSummary: Count of each issue code (LINK_BROKEN_FILE, LINK_BROKEN_ANCHOR, etc.)
   collections: Per-collection stats including filesWithErrors, errorCount
   errors: Detailed errors grouped by file
 
@@ -112,6 +118,9 @@ Validation Checks:
 External URL Validation:
   By default, external URLs are NOT validated (for speed).
   Use --check-external-urls to enable HTTP checking of external links.
+  External-URL findings (EXTERNAL_URL_DEAD/TIMEOUT/ERROR) are configurable
+  warnings — they do NOT fail the build by default. Promote them to errors
+  or silence them via resources.validation.severity in your config.
   Results are cached in system temp directory (24h alive, 1h dead).
   Cache is shared across all projects (URLs are universal).
   Use --no-cache to force fresh checks (ignores cache).
@@ -153,6 +162,12 @@ Frontmatter Validation:
 Exit Codes:
   0 - Success  |  1 - Validation errors  |  2 - System error
 
+Requirements:
+  projectRoot: optional (falls back to cwd with a warning)
+  config:      optional (uses defaults if absent)
+
+  See docs/concepts/roots-and-config.md for terminology.
+
 Examples:
 
   Mode 1: Quick directory scan (no collections)

package/dist/commands/resources/index.js.map

@@ -1 +1 @@
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+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../../src/commands/resources/index.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAEpC,OAAO,EAAE,WAAW,EAAE,MAAM,WAAW,CAAC;AACxC,OAAO,EAAE,eAAe,EAAE,MAAM,eAAe,CAAC;AAEhD,MAAM,UAAU,sBAAsB;IACpC,MAAM,SAAS,GAAG,IAAI,OAAO,CAAC,WAAW,CAAC,CAAC;IAE3C,SAAS;SACN,WAAW,CAAC,oEAAoE,CAAC;SACjF,WAAW,CAAC,KAAK,CAAC,CAAC,uDAAuD;SAC1E,WAAW,CACV,OAAO,EACP;;;;;;CAML,CACI,CAAC;IAEJ,SAAS;SACN,OAAO,CAAC,aAAa,CAAC;SACtB,WAAW,CAAC,0CAA0C,CAAC;SACvD,MAAM,CAAC,SAAS,EAAE,sBAAsB,CAAC;SACzC,MAAM,CAAC,WAAW,EAAE,kCAAkC,CAAC;SACvD,MAAM,CAAC,mBAAmB,EAAE,yBAAyB,CAAC;SACtD,MAAM,CAAC,WAAW,CAAC;SACnB,WAAW,CACV,OAAO,EACP;;;;;;;;;;;;;;;;;;;;;;;;;;;CA2BL,CACI,CAAC;IAEJ,SAAS;SACN,OAAO,CAAC,iBAAiB,CAAC;SAC1B,WAAW,CAAC,uDAAuD,CAAC;SACpE,MAAM,CAAC,SAAS,EAAE,sBAAsB,CAAC;SACzC,MAAM,CAAC,6BAA6B,EAAE,gEAAgE,CAAC;SACvG,MAAM,CAAC,0BAA0B,EAAE,6DAA6D,EAAE,QAAQ,CAAC;SAC3G,MAAM,CAAC,mBAAmB,EAAE,8CAA8C,EAAE,MAAM,CAAC;SACnF,MAAM,CAAC,mBAAmB,EAAE,yBAAyB,CAAC;SACtD,MAAM,CAAC,uBAAuB,EAAE,yDAAyD,CAAC;SAC1F,MAAM,CAAC,YAAY,EAAE,iEAAiE,CAAC;SACvF,MAAM,CAAC,8BAA8B,EAAE,0FAA0F,CAAC;SAClI,MAAM,CAAC,eAAe,CAAC;SACvB,WAAW,CACV,OAAO,EACP;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;CAoIL,CACI,CAAC;IAEJ,OAAO,SAAS,CAAC;AACnB,CAAC;AAED,OAAO,EAAE,wBAAwB,EAAE,MAAM,WAAW,CAAC"}

package/dist/commands/resources/scan.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"scan.d.ts","sourceRoot":"","sources":["../../../src/commands/resources/scan.ts"],"names":[],"mappings":"AAAA;;GAEG;AASH,UAAU,WAAW;IACnB,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAED,wBAAsB,WAAW,CAC/B,OAAO,EAAE,MAAM,GAAG,SAAS,EAC3B,OAAO,EAAE,WAAW,GACnB,OAAO,CAAC,IAAI,CAAC,CAkFf"}
+{"version":3,"file":"scan.d.ts","sourceRoot":"","sources":["../../../src/commands/resources/scan.ts"],"names":[],"mappings":"AAAA;;GAEG;AAUH,UAAU,WAAW;IACnB,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,UAAU,CAAC,EAAE,MAAM,CAAC;CACrB;AAED,wBAAsB,WAAW,CAC/B,OAAO,EAAE,MAAM,GAAG,SAAS,EAC3B,OAAO,EAAE,WAAW,GACnB,OAAO,CAAC,IAAI,CAAC,CAqFf"}

package/dist/commands/resources/scan.js

@@ -4,14 +4,17 @@
 import { formatDurationSecs } from '../../utils/duration.js';
 import { createLogger } from '../../utils/logger.js';
 import { writeYamlOutput } from '../../utils/output.js';
+import { projectRootOrLoudCwd } from '../../utils/project-root-policy.js';
 import { loadResourcesWithConfig } from '../../utils/resource-loader.js';
 import { handleCommandError } from './command-helpers.js';
 export async function scanCommand(pathArg, options) {
     const logger = createLogger({ debug: options.debug ?? false });
     const startTime = Date.now();
     try {
+        // Resolve projectRoot at the CLI boundary (spec §5/§7 — loud-cwd policy).
+        const projectRoot = projectRootOrLoudCwd(pathArg ?? process.cwd(), logger);
         // Load resources with config support
-        const { registry } = await loadResourcesWithConfig(pathArg, logger);
+        const { registry } = await loadResourcesWithConfig(pathArg, projectRoot, logger);
         // Get all resources (filtered by collection if specified)
         let allResources = registry.getAllResources();
         if (options.collection) {

package/dist/commands/resources/scan.js.map

@@ -1 +1 @@
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+{"version":3,"file":"scan.js","sourceRoot":"","sources":["../../../src/commands/resources/scan.ts"],"names":[],"mappings":"AAAA;;GAEG;AAEH,OAAO,EAAE,kBAAkB,EAAE,MAAM,yBAAyB,CAAC;AAC7D,OAAO,EAAE,YAAY,EAAE,MAAM,uBAAuB,CAAC;AACrD,OAAO,EAAE,eAAe,EAAE,MAAM,uBAAuB,CAAC;AACxD,OAAO,EAAE,oBAAoB,EAAE,MAAM,oCAAoC,CAAC;AAC1E,OAAO,EAAE,uBAAuB,EAAE,MAAM,gCAAgC,CAAC;AAEzE,OAAO,EAAE,kBAAkB,EAAE,MAAM,sBAAsB,CAAC;AAQ1D,MAAM,CAAC,KAAK,UAAU,WAAW,CAC/B,OAA2B,EAC3B,OAAoB;IAEpB,MAAM,MAAM,GAAG,YAAY,CAAC,EAAE,KAAK,EAAE,OAAO,CAAC,KAAK,IAAI,KAAK,EAAE,CAAC,CAAC;IAC/D,MAAM,SAAS,GAAG,IAAI,CAAC,GAAG,EAAE,CAAC;IAE7B,IAAI,CAAC;QACH,0EAA0E;QAC1E,MAAM,WAAW,GAAG,oBAAoB,CAAC,OAAO,IAAI,OAAO,CAAC,GAAG,EAAE,EAAE,MAAM,CAAC,CAAC;QAE3E,qCAAqC;QACrC,MAAM,EAAE,QAAQ,EAAE,GAAG,MAAM,uBAAuB,CAAC,OAAO,EAAE,WAAW,EAAE,MAAM,CAAC,CAAC;QAEjF,0DAA0D;QAC1D,IAAI,YAAY,GAAG,QAAQ,CAAC,eAAe,EAAE,CAAC;QAC9C,IAAI,OAAO,CAAC,UAAU,EAAE,CAAC;YACvB,MAAM,EAAE,UAAU,EAAE,GAAG,OAAO,CAAC;YAC/B,YAAY,GAAG,YAAY,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE;gBACrC,OAAO,UAAU,CAAC,CAAC,CAAC,CAAC,CAAC,WAAW,EAAE,QAAQ,CAAC,UAAU,CAAC,IAAI,KAAK,CAAC,CAAC,CAAC,KAAK,CAAC;YAC3E,CAAC,CAAC,CAAC;QACL,CAAC;QAED,0CAA0C;QAC1C,MAAM,UAAU,GAAG,YAAY,CAAC,MAAM,CAAC,CAAC,GAAG,EAAE,CAAC,EAAE,EAAE,CAAC,GAAG,GAAG,CAAC,CAAC,KAAK,CAAC,MAAM,EAAE,CAAC,CAAC,CAAC;QAC5E,MAAM,QAAQ,GAAG,IAAI,CAAC,GAAG,EAAE,GAAG,SAAS,CAAC;QAIxC,MAAM,aAAa,GAAG,CAAC,QAA+B,EAAU,EAAE;YAChE,IAAI,KAAK,GAAG,QAAQ,CAAC,MAAM,CAAC;YAC5B,KAAK,MAAM,OAAO,IAAI,QAAQ,EAAE,CAAC;gBAC/B,IAAI,OAAO,CAAC,QAAQ,EAAE,CAAC;oBACrB,KAAK,IAAI,aAAa,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAC;gBAC3C,CAAC;YACH,CAAC;YACD,OAAO,KAAK,CAAC;QACf,CAAC,CAAC;QAEF,MAAM,aAAa,GAAG,YAAY,CAAC,MAAM,CACvC,CAAC,GAAG,EAAE,QAAQ,EAAE,EAAE,CAAC,GAAG,GAAG,aAAa,CAAC,QAAQ,CAAC,QAAQ,CAAC,EACzD,CAAC,CACF,CAAC;QAEF,2CAA2C;QAC3C,IAAI,iBAAwE,CAAC;QAC7E,IAAI,OAAO,CAAC,UAAU,EAAE,CAAC;YACvB,0DAA0D;YAC1D,iBAAiB,GAAG,EAAE,CAAC,OAAO,CAAC,UAAU,CAAC,EAAE,EAAE,aAAa,EAAE,YAAY,CAAC,MAAM,EAAE,EAAE,CAAC;QACvF,CAAC;aAAM,CAAC;YACN,uBAAuB;YACvB,MAAM,eAAe,GAAG,QAAQ,CAAC,kBAAkB,EAAE,CAAC;YACtD,iBAAiB,GAAG,eAAe;gBACjC,CAAC,CAAC,MAAM,CAAC,WAAW,CAChB,MAAM,CAAC,OAAO,CAAC,eAAe,CAAC,WAAW,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAE,EAAE,IAAI,CAAC,EAAE,EAAE,CAAC;oBAC9D,EAAE;oBACF,EAAE,aAAa,EAAE,IAAI,CAAC,aAAa,EAAE;iBACtC,CAAC,CACH;gBACH,CAAC,CAAC,SAAS,CAAC;QAChB,CAAC;QAED,yBAAyB;QACzB,MAAM,UAAU,GAA4B;YAC1C,MAAM,EAAE,SAAS;YACjB,YAAY,EAAE,YAAY,CAAC,MAAM;YACjC,UAAU,EAAE,UAAU;YACtB,YAAY,EAAE,aAAa;YAC3B,YAAY,EAAE,kBAAkB,CAAC,QAAQ,CAAC;YAC1C,GAAG,CAAC,iBAAiB,CAAC,CAAC,CAAC,EAAE,WAAW,EAAE,iBAAiB,EAAE,CAAC,CAAC,CAAC,EAAE,CAAC;SACjE,CAAC;QAEF,wCAAwC;QACxC,IAAI,OAAO,CAAC,OAAO,EAAE,CAAC;YACpB,UAAU,CAAC,OAAO,CAAC,GAAG,YAAY,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAE,CAAC,CAAC;gBAClD,IAAI,EAAE,QAAQ,CAAC,QAAQ;gBACvB,KAAK,EAAE,QAAQ,CAAC,KAAK,CAAC,MAAM;gBAC5B,OAAO,EAAE,aAAa,CAAC,QAAQ,CAAC,QAAQ,CAAC;gBACzC,QAAQ,EAAE,QAAQ,CAAC,QAAQ;aAC5B,CAAC,CAAC,CAAC;QACN,CAAC;QAED,eAAe,CAAC,UAAU,CAAC,CAAC;QAE5B,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;IAClB,CAAC;IAAC,OAAO,KAAK,EAAE,CAAC;QACf,kBAAkB,CAAC,KAAK,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,CAAC,CAAC;IACvD,CAAC;AACH,CAAC"}

package/dist/commands/resources/validate.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"validate.d.ts","sourceRoot":"","sources":["../../../src/commands/resources/validate.ts"],"names":[],"mappings":"AAAA;;GAEG;AA+FH;;GAEG;AACH,KAAK,YAAY,GAAG,MAAM,GAAG,MAAM,GAAG,MAAM,CAAC;AA6M7C,UAAU,eAAe;IACvB,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,iBAAiB,CAAC,EAAE,MAAM,CAAC;IAC3B,cAAc,CAAC,EAAE,QAAQ,GAAG,YAAY,CAAC;IACzC,MAAM,CAAC,EAAE,YAAY,CAAC;IACtB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,iBAAiB,CAAC,EAAE,OAAO,CAAC;IAC5B,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,qBAAqB,CAAC,EAAE,OAAO,CAAC;CACjC;AAiBD,wBAAsB,eAAe,CACnC,OAAO,EAAE,MAAM,GAAG,SAAS,EAC3B,OAAO,EAAE,eAAe,GACvB,OAAO,CAAC,IAAI,CAAC,CAwHf"}
+{"version":3,"file":"validate.d.ts","sourceRoot":"","sources":["../../../src/commands/resources/validate.ts"],"names":[],"mappings":"AAAA;;GAEG;AAiHH;;GAEG;AACH,KAAK,YAAY,GAAG,MAAM,GAAG,MAAM,GAAG,MAAM,CAAC;AAsR7C,UAAU,eAAe;IACvB,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,iBAAiB,CAAC,EAAE,MAAM,CAAC;IAC3B,cAAc,CAAC,EAAE,QAAQ,GAAG,YAAY,CAAC;IACzC,MAAM,CAAC,EAAE,YAAY,CAAC;IACtB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,iBAAiB,CAAC,EAAE,OAAO,CAAC;IAC5B,OAAO,CAAC,EAAE,OAAO,CAAC;IAClB,qBAAqB,CAAC,EAAE,OAAO,CAAC;CACjC;AAiBD,wBAAsB,eAAe,CACnC,OAAO,EAAE,MAAM,GAAG,SAAS,EAC3B,OAAO,EAAE,eAAe,GACvB,OAAO,CAAC,IAAI,CAAC,CAmFf"}

package/dist/commands/resources/validate.js

@@ -3,11 +3,12 @@
  */
 import { readFile } from 'node:fs/promises';
 import * as path from 'node:path';
-import { resolveAssetReference } from '@vibe-agent-toolkit/utils';
-import * as yaml from 'js-yaml';
+import { resolveAssetReference, safePath } from '@vibe-agent-toolkit/utils';
+import * as yaml from 'yaml';
 import { formatDurationSecs } from '../../utils/duration.js';
 import { createLogger } from '../../utils/logger.js';
 import { writeTestFormatError } from '../../utils/output.js';
+import { projectRootOrLoudCwd } from '../../utils/project-root-policy.js';
 import { loadResourcesWithConfig } from '../../utils/resource-loader.js';
 import { handleCommandError } from './command-helpers.js';
 async function loadSchema(schemaPath) {
@@ -19,8 +20,7 @@ async function loadSchema(schemaPath) {
         return JSON.parse(content);
     }
     else if (ext === '.yaml' || ext === '.yml') {
-        // CORE_SCHEMA: YAML 1.2 spec — see link-parser.ts for rationale.
-        const parsed = yaml.load(content, { schema: yaml.CORE_SCHEMA });
+        const parsed = yaml.parse(content);
         if (typeof parsed === 'object' && parsed !== null && !Array.isArray(parsed)) {
             return parsed;
         }
@@ -38,7 +38,7 @@ function writeStructuredOutput(data, format) {
         console.log(JSON.stringify(data, null, 2));
     }
     else {
-        console.log(yaml.dump(data, { indent: 2, lineWidth: -1 }));
+        console.log(yaml.stringify(data, { indent: 2, lineWidth: 0, aliasDuplicateObjects: false }));
     }
 }
 /**
@@ -47,25 +47,19 @@ function writeStructuredOutput(data, format) {
 function groupErrorsByFile(errors) {
     const fileMap = new Map();
     for (const error of errors) {
+        const entry = {
+            line: error.line,
+            column: error.column,
+            code: error.code,
+            severity: error.severity,
+            message: error.message,
+        };
         const existing = fileMap.get(error.file);
         if (existing) {
-            existing.errors.push({
-                line: error.line,
-                column: error.column,
-                type: error.type,
-                message: error.message,
-            });
+            existing.errors.push(entry);
         }
         else {
-            fileMap.set(error.file, {
-                file: error.file,
-                errors: [{
-                        line: error.line,
-                        column: error.column,
-                        type: error.type,
-                        message: error.message,
-                    }],
-            });
+            fileMap.set(error.file, { file: error.file, errors: [entry] });
         }
     }
     return [...fileMap.values()];
@@ -80,36 +74,48 @@ function logGitTrackerStats(gitTracker, logger) {
     }
 }
 /**
- * Output validation failure results.
+ * Merge per-collection error stats into the base collection stats for output.
+ */
+function buildCollectionsWithErrors(collectionStats, collectionErrorStats) {
+    const collectionsWithErrors = {};
+    if (!collectionStats) {
+        return collectionsWithErrors;
+    }
+    for (const [id, baseStat] of Object.entries(collectionStats.collections)) {
+        const errorStat = collectionErrorStats.get(id);
+        collectionsWithErrors[id] = {
+            ...baseStat,
+            ...(errorStat ? {
+                filesWithErrors: errorStat.filesWithErrors,
+                errorCount: errorStat.errorCount,
+            } : {}),
+        };
+    }
+    return collectionsWithErrors;
+}
+/**
+ * Output validation results when one or more issues fired.
+ *
+ * Surfaces ALL severity-resolved issues (errors AND warnings/info) so users see
+ * them, but the `failed` flag — derived from the library's `hasErrors` — controls
+ * the reported `status`. The caller, not this function, owns the exit code.
  */
-function outputFailure(errorData, outputFormat, context, registry) {
+function outputIssues(issueData, outputFormat, context, registry, failed) {
     if (outputFormat === 'text') {
-        // Text format: test-format errors to stderr
-        for (const error of errorData) {
-            writeTestFormatError(error.file, error.line, error.column, error.message);
+        // Text format: test-format issues to stderr
+        for (const issue of issueData) {
+            writeTestFormatError(issue.file, issue.line, issue.column, issue.message);
         }
     }
     else {
-        // Calculate error summary
-        const summary = buildErrorSummary(errorData, registry);
+        // Calculate issue summary (keyed by code)
+        const summary = buildErrorSummary(issueData, registry);
         // Build collection stats with error info
-        const collectionsWithErrors = {};
-        if (context.collectionStats) {
-            for (const [id, baseStat] of Object.entries(context.collectionStats.collections)) {
-                const errorStat = summary.collectionErrorStats.get(id);
-                collectionsWithErrors[id] = {
-                    ...baseStat,
-                    ...(errorStat ? {
-                        filesWithErrors: errorStat.filesWithErrors,
-                        errorCount: errorStat.errorCount,
-                    } : {}),
-                };
-            }
-        }
-        // Group errors by file
-        const groupedErrors = groupErrorsByFile(errorData);
+        const collectionsWithErrors = buildCollectionsWithErrors(context.collectionStats, summary.collectionErrorStats);
+        // Group issues by file
+        const groupedErrors = groupErrorsByFile(issueData);
         const outputData = {
-            status: 'failed',
+            status: failed ? 'failed' : 'success',
             filesScanned: context.stats.totalResources,
             filesWithErrors: summary.filesWithErrors,
             errorsFound: context.errorCount,
@@ -158,22 +164,23 @@ function outputSuccess(outputFormat, context) {
  * - Unique files with errors
  * - Per-collection error statistics
  *
- * @param issues - Validation issues from registry (using ErrorData format with file instead of resourcePath)
- * @param registry - Resource registry for collection lookups
+ * @param issues - Flattened validation issues (relative `file`, absolute `absPath`, `code`)
+ * @param registry - Resource registry for collection lookups (keyed by ABSOLUTE path)
  * @returns Error summary statistics
  */
 function buildErrorSummary(issues, registry) {
-    // 1. Count by error type
+    // 1. Count by code
     const errorSummary = {};
     for (const issue of issues) {
-        errorSummary[issue.type] = (errorSummary[issue.type] ?? 0) + 1;
+        errorSummary[issue.code] = (errorSummary[issue.code] ?? 0) + 1;
     }
     // 2. Count unique files with errors
     const filesWithErrorsSet = new Set(issues.map(i => i.file));
-    // 3. Map files to collections and count errors per collection
+    // 3. Map files to collections and count errors per collection.
+    //    registry.getResource keys on the ABSOLUTE path, so look up via absPath.
     const collectionErrors = new Map();
     for (const issue of issues) {
-        const resource = registry.getResource(issue.file);
+        const resource = registry.getResource(issue.absPath);
         const collections = resource?.collections;
         if (collections) {
             for (const collectionId of collections) {
@@ -201,6 +208,49 @@ function buildErrorSummary(issues, registry) {
         collectionErrorStats: collectionStats,
     };
 }
+/**
+ * Restrict issues and stats to a single collection.
+ *
+ * Issue locations are RELATIVE to projectRoot, but `resource.filePath` is
+ * ABSOLUTE — convert the collection's resource paths to the same relative basis
+ * before comparing, so the filter actually matches.
+ */
+function filterByCollection(registry, validationResult, collection, projectRoot) {
+    const collectionResources = registry
+        .getAllResources()
+        .filter(r => r.collections?.includes(collection) ?? false);
+    const collectionPaths = new Set(collectionResources.map(r => safePath.relative(projectRoot, r.filePath)));
+    const filteredIssues = validationResult.issues.filter(issue => issue.location !== undefined && collectionPaths.has(issue.location));
+    const totalLinks = collectionResources.reduce((sum, r) => sum + r.links.length, 0);
+    return {
+        filteredIssues,
+        filteredStats: {
+            totalResources: collectionResources.length,
+            totalLinks,
+            linksByType: validationResult.linksByType, // Keep all link types
+        },
+    };
+}
+/**
+ * Flatten severity-resolved issues for display.
+ *
+ * `file` is RELATIVE to projectRoot (matches `issue.location`, used for display);
+ * `absPath` is ABSOLUTE (for registry/collection lookups via getResource).
+ */
+function flattenIssuesForDisplay(issues, projectRoot) {
+    return issues.map(issue => {
+        const file = issue.location ?? '';
+        return {
+            file,
+            absPath: file ? safePath.resolve(projectRoot, file) : '',
+            line: issue.line ?? 1,
+            column: 1,
+            code: issue.code,
+            severity: issue.severity,
+            message: issue.message,
+        };
+    });
+}
 /**
  * Apply the --no-check-frontmatter-links CLI flag to the loaded config.
  *
@@ -220,8 +270,10 @@ export async function validateCommand(pathArg, options) {
     const logger = createLogger(options.debug ? { debug: true } : {});
     const startTime = Date.now();
     try {
+        // Resolve projectRoot at the CLI boundary (spec §5/§7 — loud-cwd policy).
+        const projectRoot = projectRootOrLoudCwd(pathArg ?? process.cwd(), logger);
         // Load resources with config support (includes GitTracker initialization)
-        const { registry, config, gitTracker } = await loadResourcesWithConfig(pathArg, logger);
+        const { registry, config, gitTracker } = await loadResourcesWithConfig(pathArg, projectRoot, logger);
         // CLI flag: --no-check-frontmatter-links disables the check for every collection.
         // Commander represents the negated form as options.checkFrontmatterLinks === false.
         if (options.checkFrontmatterLinks === false) {
@@ -240,84 +292,77 @@ export async function validateCommand(pathArg, options) {
             validationMode,
             checkExternalUrls: options.checkExternalUrls ?? false,
             noCache: options.noCache ?? false,
+            // Thread the project's resources.validation config in. The CLI does NOT
+            // resolve severity itself — ResourceRegistry.validate() runs the framework.
+            validationConfig: config?.resources?.validation ?? {},
         });
         // Filter by collection if specified
-        let filteredIssues = validationResult.issues;
-        let filteredStats;
-        if (options.collection) {
-            // Get resources in the specified collection
-            const { collection } = options;
-            const collectionResources = registry
-                .getAllResources()
-                .filter(r => (collection ? r.collections?.includes(collection) ?? false : false));
-            const collectionPaths = new Set(collectionResources.map(r => r.filePath));
-            // Only show issues from files in this collection
-            filteredIssues = validationResult.issues.filter(issue => collectionPaths.has(issue.resourcePath));
-            // Calculate filtered stats
-            const totalLinks = collectionResources.reduce((sum, r) => sum + r.links.length, 0);
-            filteredStats = {
-                totalResources: collectionResources.length,
-                totalLinks,
-                linksByType: validationResult.linksByType, // Keep all link types
-            };
-        }
-        else {
-            filteredStats = registry.getStats();
-        }
+        const { filteredIssues, filteredStats } = options.collection
+            ? filterByCollection(registry, validationResult, options.collection, projectRoot)
+            : { filteredIssues: validationResult.issues, filteredStats: registry.getStats() };
         const duration = Date.now() - startTime;
         // Build validation metadata
         const validationMetadata = {
             validationMode,
             ...(options.frontmatterSchema ? { frontmatterSchema: options.frontmatterSchema } : {}),
         };
-        // Get collection stats (filtered if collection specified)
-        let collectionStats = registry.getCollectionStats();
-        if (options.collection && collectionStats) {
-            // Only show the specified collection
-            const collectionStat = collectionStats.collections[options.collection];
-            if (collectionStat) {
-                collectionStats = {
-                    totalCollections: 1,
-                    resourcesInCollections: collectionStat.resourceCount,
-                    collections: { [options.collection]: collectionStat },
-                };
-            }
-        }
-        // Filter out external_url issues (informational only, not actual errors)
-        const actualErrors = filteredIssues.filter(issue => issue.type !== 'external_url');
-        const hasErrors = actualErrors.length > 0;
-        // Determine output format (default: yaml)
-        const outputFormat = options.format ?? 'yaml';
-        if (hasErrors) {
-            // Failure path
-            const errorData = actualErrors.map(issue => ({
-                file: issue.resourcePath,
-                line: issue.line ?? 1,
-                column: 1,
-                type: issue.type,
-                message: issue.message,
-            }));
-            const context = {
-                stats: filteredStats,
-                errorCount: validationResult.errorCount,
-                validationMetadata,
-                collectionStats,
-                duration,
-            };
-            outputFailure(errorData, outputFormat, context, registry);
-            logGitTrackerStats(gitTracker, logger);
-            process.exit(1);
-        }
-        else {
-            // Success path
-            const context = { stats: filteredStats, validationMetadata, collectionStats, duration };
-            outputSuccess(outputFormat, context);
-            logGitTrackerStats(gitTracker, logger);
-            process.exit(0);
-        }
+        // Get collection stats (narrowed to the requested collection, if any).
+        const collectionStats = narrowCollectionStats(registry.getCollectionStats(), options.collection);
+        // The library already severity-resolved every issue (allow-filtered, ignored
+        // dropped) and decided pass/fail. The CLI is a dumb orchestrator: the failure
+        // decision is exactly the framework's severity-based `hasErrors`. Warning- and
+        // info-severity issues are surfaced below but DO NOT flip the exit code.
+        const { hasErrors } = validationResult;
+        // Flatten issues for display (relative `file` + absolute `absPath`).
+        const issueData = flattenIssuesForDisplay(filteredIssues, projectRoot);
+        // The count shown to the user as "errors" counts only error-severity issues.
+        const errorSeverityCount = issueData.filter(i => i.severity === 'error').length;
+        const context = {
+            stats: filteredStats,
+            errorCount: errorSeverityCount,
+            validationMetadata,
+            collectionStats,
+            duration,
+        };
+        emitResult(issueData, context, registry, hasErrors, options.format ?? 'yaml');
+        logGitTrackerStats(gitTracker, logger);
+        // Exit decision is purely the library's severity-based `hasErrors`.
+        process.exit(hasErrors ? 1 : 0);
     }
     catch (error) {
         handleCommandError(error, logger, startTime, 'Validation');
     }
 }
+/**
+ * Narrow collection stats to a single requested collection (no-op when no
+ * collection filter is active or the collection has no stats).
+ */
+function narrowCollectionStats(collectionStats, collection) {
+    if (!collection || !collectionStats) {
+        return collectionStats;
+    }
+    const collectionStat = collectionStats.collections[collection];
+    if (!collectionStat) {
+        return collectionStats;
+    }
+    return {
+        totalCollections: 1,
+        resourcesInCollections: collectionStat.resourceCount,
+        collections: { [collection]: collectionStat },
+    };
+}
+/**
+ * Emit the result to stdout. Surfaces all issues when any fired; otherwise emits
+ * a clean success. Does NOT decide the exit code — the caller owns that.
+ */
+function emitResult(issueData, context, registry, hasErrors, outputFormat) {
+    if (issueData.length > 0) {
+        // Issues to surface (errors and/or warnings/info). Reported status follows
+        // the exit decision: 'failed' iff the framework flagged errors.
+        outputIssues(issueData, outputFormat, context, registry, hasErrors);
+    }
+    else {
+        outputSuccess(outputFormat, context);
+    }
+}
 //# sourceMappingURL=validate.js.map

package/dist/commands/resources/validate.js.map

@@ -1 +1 @@
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package/dist/commands/skill/review.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"review.d.ts","sourceRoot":"","sources":["../../../src/commands/skill/review.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAaH,OAAO,EAAE,OAAO,EAAE,MAAM,WAAW,CAAC;AAmBpC,MAAM,WAAW,yBAAyB;IACxC,IAAI,CAAC,EAAE,OAAO,CAAC;IACf,KAAK,CAAC,EAAE,OAAO,CAAC;CACjB;AAED;;;;;;;;;;;GAWG;AACH,wBAAgB,gBAAgB,CAAC,OAAO,EAAE,MAAM,GAAG,MAAM,CAgCxD;AA+LD,wBAAsB,aAAa,CACjC,OAAO,EAAE,MAAM,GAAG,SAAS,EAC3B,OAAO,EAAE,yBAAyB,GACjC,OAAO,CAAC,IAAI,CAAC,CA0Cf;AAED,wBAAgB,wBAAwB,IAAI,OAAO,CA4ClD"}

package/dist/commands/skill/review.js

@@ -14,10 +14,11 @@ import { dirname } from 'node:path';
 import { validateSkillForPackaging, } from '@vibe-agent-toolkit/agent-skills';
 import { gitFindRoot, safePath } from '@vibe-agent-toolkit/utils';
 import { Command } from 'commander';
-import * as yaml from 'js-yaml';
+import * as yaml from 'yaml';
 import { handleCommandError } from '../../utils/command-error.js';
 import { loadConfig } from '../../utils/config-loader.js';
 import { createLogger } from '../../utils/logger.js';
+import { projectRootOrNull } from '../../utils/project-root-policy.js';
 import { mergeSkillPackagingConfig } from '../../utils/skill-packaging-config.js';
 import { renderSkillQualityFooter } from '../../utils/skill-quality-footer.js';
 import { applyConfigVerdicts } from '../../utils/verdict-helpers.js';
@@ -202,7 +203,7 @@ function outputYaml(result, skillPath, grouped) {
         manual,
     };
     process.stdout.write('---\n');
-    process.stdout.write(yaml.dump(payload, { indent: 2, lineWidth: 120, noRefs: true }));
+    process.stdout.write(yaml.stringify(payload, { indent: 2, lineWidth: 120, aliasDuplicateObjects: false }));
 }
 /** Footer: share the checklist link when any skill-level finding fires. */
 function renderFooter(result, logger) {
@@ -220,6 +221,11 @@ export async function reviewCommand(pathArg, options) {
         if (pathArg === undefined || pathArg === '') {
             throw new Error('Missing required argument: <path> (path to SKILL.md or a skill directory)');
         }
+        // Spec §7: `vat skill review` uses `tolerate null` (single-skill review
+        // operates with or without a governing project). The result is recorded
+        // for future use; today resolvePackagingConfig walks per-skill (will be
+        // consolidated in Phase 5 once the audit walk-up cache lands).
+        projectRootOrNull(process.cwd());
         const skillPath = resolveSkillPath(pathArg);
         logger.debug(`Reviewing SKILL.md at: ${skillPath}`);
         const packagingConfig = await resolvePackagingConfig(skillPath, logger);
@@ -269,6 +275,12 @@ Exit Codes:
   1 - At least one error or warning present (errors and warnings treated equally — this is a review, not a gate)
   2 - System error (path missing, internal failure)
 
+Requirements:
+  projectRoot: optional (tolerates absence)
+  config:      optional (uses defaults if absent)
+
+  See docs/concepts/roots-and-config.md for terminology.
+
 Example:
   $ vat skill review packages/my-agents/src/skills/ado/SKILL.md
 `);

package/dist/commands/skill/review.js.map

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package/dist/commands/skills/build.d.ts.map

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