@vibe-agent-toolkit/agent-skills 0.1.41-rc.8 → 0.1.41

package/dist/validators/skill-validator.js

@@ -10,7 +10,7 @@ import { detectUndeclaredCrossSkillAuth } from './cross-skill-dependency-detecti
 import { validateFrontmatterRules, validateFrontmatterSchema } from './frontmatter-validation.js';
 import { detectNonImperativeBody } from './imperative-body-detection.js';
 import { detectKebabCaseViolation } from './kebab-case-detection.js';
-import { NAVIGATION_FILE_PATTERNS } from './validation-rules.js';
+import { isNeverPackagedBasename } from './validation-rules.js';
 /**
  * Validate an Agent Skill (SKILL.md file)
  *
@@ -115,12 +115,18 @@ export async function validateSkill(options) {
 // ============================================================================
 // Link Traversal (BFS)
 // ============================================================================
-/** Files to never flag as unreferenced */
-const UNREFERENCED_EXCLUDE_PATTERNS = new Set([
-    'SKILL.md',
-    'CLAUDE.md',
-    ...NAVIGATION_FILE_PATTERNS,
-]);
+/**
+ * Files to never flag as unreferenced.
+ *
+ * The skill's own entry point, plus everything VAT never packages into a skill
+ * bundle (agent-instruction files and navigation files). Delegates to the shared
+ * CASE-INSENSITIVE matcher rather than a Set of literal spellings: a `Readme.md`
+ * is as unreferenceable as a `README.md`, and a Set can only ever know the
+ * spellings someone thought to enumerate.
+ */
+function isExemptFromUnreferencedCheck(fileName) {
+    return fileName === 'SKILL.md' || isNeverPackagedBasename(fileName);
+}
 /**
  * Validate a single local_file link: boundary check, existence check.
  *
@@ -273,7 +279,7 @@ function detectUnreferencedFiles(skillPath, skillDir, locationRoot, linkedFiles,
         const absPath = safePath.resolve(skillDir, relPath);
         const fileName = basename(relPath);
         // Skip excluded patterns
-        if (UNREFERENCED_EXCLUDE_PATTERNS.has(fileName)) {
+        if (isExemptFromUnreferencedCheck(fileName)) {
             continue;
         }
         // Skip files that were visited during traversal

package/dist/validators/skill-validator.js.map

@@ -1 +1 @@
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package/dist/validators/source-only-codes.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"source-only-codes.d.ts","sourceRoot":"","sources":["../../src/validators/source-only-codes.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,eAAO,MAAM,iBAAiB,EAAE,WAAW,CAAC,MAAM,CAMhD,CAAC"}
+{"version":3,"file":"source-only-codes.d.ts","sourceRoot":"","sources":["../../src/validators/source-only-codes.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,eAAO,MAAM,iBAAiB,EAAE,WAAW,CAAC,MAAM,CAOhD,CAAC"}

package/dist/validators/source-only-codes.js

@@ -8,5 +8,6 @@ export const SOURCE_ONLY_CODES = new Set([
     'LINK_TARGETS_DIRECTORY',
     'REFERENCE_TOO_DEEP',
     'LINK_TO_NAVIGATION_FILE',
+    'LINK_TO_AGENT_INSTRUCTION_FILE',
 ]);
 //# sourceMappingURL=source-only-codes.js.map

package/dist/validators/source-only-codes.js.map

@@ -1 +1 @@
-{"version":3,"file":"source-only-codes.js","sourceRoot":"","sources":["../../src/validators/source-only-codes.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,MAAM,CAAC,MAAM,iBAAiB,GAAwB,IAAI,GAAG,CAAC;IAC5D,sBAAsB;IACtB,yBAAyB;IACzB,wBAAwB;IACxB,oBAAoB;IACpB,yBAAyB;CAC1B,CAAC,CAAC"}
+{"version":3,"file":"source-only-codes.js","sourceRoot":"","sources":["../../src/validators/source-only-codes.ts"],"names":[],"mappings":"AAAA;;;GAGG;AACH,MAAM,CAAC,MAAM,iBAAiB,GAAwB,IAAI,GAAG,CAAC;IAC5D,sBAAsB;IACtB,yBAAyB;IACzB,wBAAwB;IACxB,oBAAoB;IACpB,yBAAyB;IACzB,gCAAgC;CACjC,CAAC,CAAC"}

package/dist/validators/validation-rules.d.ts

@@ -26,7 +26,7 @@ export type RuleCategory = 'required' | 'best_practice';
 /**
  * Validation rule code
  */
-export type ValidationRuleCode = 'BROKEN_INTERNAL_LINK' | 'CIRCULAR_REFERENCE' | 'OUTSIDE_PROJECT_BOUNDARY' | 'WINDOWS_BACKSLASH_IN_PATH' | 'LINK_TARGETS_DIRECTORY' | 'SKILL_LENGTH_EXCEEDS_RECOMMENDED' | 'SKILL_TOTAL_SIZE_LARGE' | 'SKILL_TOO_MANY_FILES' | 'REFERENCE_TOO_DEEP' | 'LINKS_TO_NAVIGATION_FILES' | 'DESCRIPTION_TOO_VAGUE' | 'NO_PROGRESSIVE_DISCLOSURE' | 'PACKAGED_UNREFERENCED_FILE' | 'PACKAGED_TEST_INPUT' | 'PACKAGED_BROKEN_LINK';
+export type ValidationRuleCode = 'BROKEN_INTERNAL_LINK' | 'CIRCULAR_REFERENCE' | 'OUTSIDE_PROJECT_BOUNDARY' | 'WINDOWS_BACKSLASH_IN_PATH' | 'LINK_TARGETS_DIRECTORY' | 'SKILL_LENGTH_EXCEEDS_RECOMMENDED' | 'SKILL_TOTAL_SIZE_LARGE' | 'SKILL_TOO_MANY_FILES' | 'REFERENCE_TOO_DEEP' | 'LINKS_TO_NAVIGATION_FILES' | 'DESCRIPTION_TOO_VAGUE' | 'NO_PROGRESSIVE_DISCLOSURE' | 'PACKAGED_UNREFERENCED_FILE';
 /**
  * Validation rule definition
  */
@@ -96,9 +96,99 @@ export declare const VALIDATION_THRESHOLDS: {
     readonly MAX_DESCRIPTION_CHARS_CLAUDE_CODE: 250;
 };
 /**
- * Navigation file patterns to detect
+ * Navigation file patterns to detect.
+ *
+ * ONE canonical spelling per name. Every consumer matches these
+ * **case-insensitively** — via {@link isNavigationBasename} /
+ * {@link isNeverPackagedBasename} for basename lookups, or via
+ * {@link toAnyDepthGlobs} for glob lanes.
+ *
+ * This list used to enumerate spellings (`README.md` *and* `readme.md`,
+ * `index.md` *and* `INDEX.md`, …) and that approach provably cannot win: it
+ * never contained `Readme.md`, the single most common real spelling, nor
+ * `ReadMe.md` or `README.MD`. Do not re-add a second spelling of any name —
+ * matching handles case, and a duplicate implies enumeration still matters.
+ */
+export declare const NAVIGATION_FILE_PATTERNS: readonly ["README.md", "index.md", "toc.md", "overview.md"];
+/**
+ * Repo-internal agent-instruction files. Deliberately a SEPARATE list from
+ * {@link NAVIGATION_FILE_PATTERNS}: a README is real content at the wrong
+ * granularity, whereas these files are guidance *about the repository they live
+ * in* and are meaningless — or actively misleading — once copied into a
+ * distributed bundle.
+ *
+ * Two distinct harms, both observed:
+ *
+ * 1. **Silent mis-resolution.** Two packages' `CLAUDE.md` files bundled under
+ *    `resourceNaming: basename` collide on one destination; one wins, and every
+ *    link to either source then resolves to the winner's content.
+ * 2. **Unintended instruction loading.** Claude Code loads `CLAUDE.md` files
+ *    found in subdirectories *under the working directory* on demand, when it
+ *    reads a file in that directory. A skill installed project-locally (e.g.
+ *    `.claude/skills/<name>/`) is under the working directory, so a bundled
+ *    `CLAUDE.md` is read as instructions the moment the agent opens a reference
+ *    beside it. (Skills installed outside the cwd — `~/.claude/skills`, plugin
+ *    directories — are not affected by this second harm. `AGENTS.md` and
+ *    `GEMINI.md` are not loaded as memory by Claude Code — it reads `CLAUDE.md`,
+ *    and picks up an `AGENTS.md` only where a `CLAUDE.md` imports it explicitly
+ *    (`@AGENTS.md`) or `/init` incorporates it — so they are listed here for the
+ *    portability and collision reasons, and treated identically to `CLAUDE.md`.)
+ *
+ * @vendor-claim reviewed=2026-08-02 verify=Re-read https://code.claude.com/docs/en/memory — "How CLAUDE.md files load" for harm 2, and the "AGENTS.md" section for the AGENTS.md/GEMINI.md sentence
+ */
+export declare const AGENT_INSTRUCTION_FILE_PATTERNS: readonly ["CLAUDE.md", "CLAUDE.local.md", "AGENTS.md", "GEMINI.md"];
+/**
+ * Basenames a GLOB `files:` entry never packages into a **skill bundle**.
+ *
+ * Two tiers, deliberately composed here rather than merged at the source:
+ *
+ * - {@link AGENT_INSTRUCTION_FILE_PATTERNS} — never packaged on ANY surface.
+ * - {@link NAVIGATION_FILE_PATTERNS} — never packaged into a *skill bundle*, and
+ *   **only** there. A plugin-root `README.md` is the plugin's front page (measured
+ *   2026-08-02: 50 of 86 installed plugins ship one; 57 of 94 when first measured),
+ *   so the plugin tree-copy must import the agent-instruction list alone. Merging
+ *   the two lists would strip the front page off three in five real plugins. The
+ *   population moves as plugins are installed and removed — the ratio is the load-
+ *   bearing part, so re-measure before citing the count as current.
+ *
+ * Only globs consult this list. Naming `source: README.md` explicitly is an
+ * unambiguous instruction to ship that file; a glob is a net, not a declaration,
+ * and does not get to launder an exemption for a file it never named.
+ */
+export declare const NEVER_PACKAGE_IN_SKILL_BUNDLE: readonly ["CLAUDE.md", "CLAUDE.local.md", "AGENTS.md", "GEMINI.md", "README.md", "index.md", "toc.md", "overview.md"];
+/**
+ * Is this basename a navigation file (README/index/toc/overview, any case)?
+ *
+ * Skill-bundle scope only — see {@link NEVER_PACKAGE_IN_SKILL_BUNDLE}.
+ */
+export declare const isNavigationBasename: (name: string) => boolean;
+/**
+ * Is this basename a repo-internal agent-instruction file (CLAUDE.md/AGENTS.md/…, any case)?
+ *
+ * Case-insensitivity is not cosmetic here: on APFS and NTFS, `Claude.md` and
+ * `claude.md` satisfy Claude Code's project-local instruction lookup exactly as
+ * `CLAUDE.md` does, so a case-sensitive check leaves the harm fully reachable.
+ */
+export declare const isAgentInstructionBasename: (name: string) => boolean;
+/**
+ * Is this basename one a GLOB `files:` entry never packages into a skill bundle?
+ *
+ * The basename-lane counterpart of {@link toAnyDepthGlobs}; both read
+ * {@link NEVER_PACKAGE_IN_SKILL_BUNDLE}. Any lane doing a `Set.has(basename)`
+ * against that constant must call this instead — a raw Set is case-sensitive and
+ * is exactly the gap this exists to close.
+ */
+export declare const isNeverPackagedBasename: (name: string) => boolean;
+/**
+ * Expand basenames into globs matching them at the tree root AND at any depth,
+ * **regardless of case**.
+ *
+ * `**\/name` alone is not portable across matchers for a root-level hit, so both
+ * depths are emitted. Shared by the presence detector's include globs and the
+ * plugin tree-copy's exclude globs so the two can never drift apart — and folded
+ * to case-insensitive so neither can be evaded by spelling the file `Claude.md`.
  */
-export declare const NAVIGATION_FILE_PATTERNS: readonly ["README.md", "readme.md", "index.md", "INDEX.md", "toc.md", "TOC.md", "overview.md", "OVERVIEW.md"];
+export declare function toAnyDepthGlobs(patterns: readonly string[]): string[];
 /**
  * Create a validation issue from a rule
  */

package/dist/validators/validation-rules.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"validation-rules.d.ts","sourceRoot":"","sources":["../../src/validators/validation-rules.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;;;;GAiBG;AAEH,OAAO,KAAK,EAAE,eAAe,EAAE,MAAM,kCAAkC,CAAC;AAExE;;;;GAIG;AACH,MAAM,MAAM,YAAY,GAAG,UAAU,GAAG,eAAe,CAAC;AAExD;;GAEG;AACH,MAAM,MAAM,kBAAkB,GAE1B,sBAAsB,GACtB,oBAAoB,GACpB,0BAA0B,GAC1B,2BAA2B,GAC3B,wBAAwB,GAExB,kCAAkC,GAClC,wBAAwB,GACxB,sBAAsB,GACtB,oBAAoB,GACpB,2BAA2B,GAC3B,uBAAuB,GACvB,2BAA2B,GAC3B,4BAA4B,CAAC;AAEjC;;GAEG;AACH,MAAM,WAAW,cAAc;IAC7B,IAAI,EAAE,kBAAkB,CAAC;IACzB,QAAQ,EAAE,YAAY,CAAC;IACvB,OAAO,EAAE,CAAC,OAAO,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,KAAK,MAAM,CAAC;IACtD,GAAG,EAAE,MAAM,CAAC;IACZ,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,IAAI,CAAC,EAAE,MAAM,CAAC;CACf;AAGD;;GAEG;AACH,eAAO,MAAM,gBAAgB,EAAE,MAAM,CAAC,kBAAkB,EAAE,cAAc,CAwGvE,CAAC;AAEF;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;GAmCG;AACH,eAAO,MAAM,qBAAqB;IAChC,6CAA6C;;IAG7C,uDAAuD;;IAGvD,uCAAuC;;IAGvC,uDAAuD;;IAGvD,8CAA8C;;IAG9C;;;OAGG;;CAEK,CAAC;AAEX;;;;;;;;;;;;;GAaG;AACH,eAAO,MAAM,wBAAwB,6DAK3B,CAAC;AAEX;;;;;;;;;;;;;;;;;;;;;;;;;GAyBG;AACH,eAAO,MAAM,+BAA+B,qEAKlC,CAAC;AAEX;;;;;;;;;;;;;;;;;GAiBG;AACH,eAAO,MAAM,6BAA6B,uHAGhC,CAAC;AAoBX;;;;GAIG;AACH,eAAO,MAAM,oBAAoB,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,OACV,CAAC;AAE5C;;;;;;GAMG;AACH,eAAO,MAAM,0BAA0B,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,OACT,CAAC;AAEnD;;;;;;;GAOG;AACH,eAAO,MAAM,uBAAuB,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,OACR,CAAC;AAqBjD;;;;;;;;GAQG;AACH,wBAAgB,eAAe,CAAC,QAAQ,EAAE,SAAS,MAAM,EAAE,GAAG,MAAM,EAAE,CAKrE;AAED;;GAEG;AACH,wBAAgB,WAAW,CACzB,IAAI,EAAE,cAAc,EACpB,OAAO,GAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAM,EACrC,QAAQ,CAAC,EAAE,MAAM,GAChB,eAAe,CAajB"}

package/dist/validators/validation-rules.js

@@ -121,18 +121,6 @@ export const VALIDATION_RULES = {
         // that restates the `files:` map is the symptom this text used to cause.
         fix: 'Add a markdown link from SKILL.md or a linked resource, or declare it under skills.config.<name>.files as a source/dest pair',
     },
-    PACKAGED_TEST_INPUT: {
-        code: 'PACKAGED_TEST_INPUT',
-        category: 'best_practice',
-        message: (ctx) => `Declared test input packaged into the shipped skill: ${ctx['relativePath'] ?? 'unknown'}`,
-        fix: 'Remove the files: entry mapping the eval suite into the bundle — test input is read from source, never shipped',
-    },
-    PACKAGED_BROKEN_LINK: {
-        code: 'PACKAGED_BROKEN_LINK',
-        category: 'best_practice',
-        message: (ctx) => `Broken link in packaged output: ${ctx['href'] ?? 'unknown'} (from ${ctx['mdPath'] ?? 'unknown'})`,
-        fix: 'Indicates a link-rewriting bug — the source link was valid but the packaged link is broken',
-    },
 };
 /**
  * Validation thresholds — mostly VAT's, not Anthropic's (see the audit below)
@@ -188,18 +176,152 @@ export const VALIDATION_THRESHOLDS = {
     MAX_DESCRIPTION_CHARS_CLAUDE_CODE: 250,
 };
 /**
- * Navigation file patterns to detect
+ * Navigation file patterns to detect.
+ *
+ * ONE canonical spelling per name. Every consumer matches these
+ * **case-insensitively** — via {@link isNavigationBasename} /
+ * {@link isNeverPackagedBasename} for basename lookups, or via
+ * {@link toAnyDepthGlobs} for glob lanes.
+ *
+ * This list used to enumerate spellings (`README.md` *and* `readme.md`,
+ * `index.md` *and* `INDEX.md`, …) and that approach provably cannot win: it
+ * never contained `Readme.md`, the single most common real spelling, nor
+ * `ReadMe.md` or `README.MD`. Do not re-add a second spelling of any name —
+ * matching handles case, and a duplicate implies enumeration still matters.
  */
 export const NAVIGATION_FILE_PATTERNS = [
     'README.md',
-    'readme.md',
     'index.md',
-    'INDEX.md',
     'toc.md',
-    'TOC.md',
     'overview.md',
-    'OVERVIEW.md',
 ];
+/**
+ * Repo-internal agent-instruction files. Deliberately a SEPARATE list from
+ * {@link NAVIGATION_FILE_PATTERNS}: a README is real content at the wrong
+ * granularity, whereas these files are guidance *about the repository they live
+ * in* and are meaningless — or actively misleading — once copied into a
+ * distributed bundle.
+ *
+ * Two distinct harms, both observed:
+ *
+ * 1. **Silent mis-resolution.** Two packages' `CLAUDE.md` files bundled under
+ *    `resourceNaming: basename` collide on one destination; one wins, and every
+ *    link to either source then resolves to the winner's content.
+ * 2. **Unintended instruction loading.** Claude Code loads `CLAUDE.md` files
+ *    found in subdirectories *under the working directory* on demand, when it
+ *    reads a file in that directory. A skill installed project-locally (e.g.
+ *    `.claude/skills/<name>/`) is under the working directory, so a bundled
+ *    `CLAUDE.md` is read as instructions the moment the agent opens a reference
+ *    beside it. (Skills installed outside the cwd — `~/.claude/skills`, plugin
+ *    directories — are not affected by this second harm. `AGENTS.md` and
+ *    `GEMINI.md` are not loaded as memory by Claude Code — it reads `CLAUDE.md`,
+ *    and picks up an `AGENTS.md` only where a `CLAUDE.md` imports it explicitly
+ *    (`@AGENTS.md`) or `/init` incorporates it — so they are listed here for the
+ *    portability and collision reasons, and treated identically to `CLAUDE.md`.)
+ *
+ * @vendor-claim reviewed=2026-08-02 verify=Re-read https://code.claude.com/docs/en/memory — "How CLAUDE.md files load" for harm 2, and the "AGENTS.md" section for the AGENTS.md/GEMINI.md sentence
+ */
+export const AGENT_INSTRUCTION_FILE_PATTERNS = [
+    'CLAUDE.md',
+    'CLAUDE.local.md',
+    'AGENTS.md',
+    'GEMINI.md',
+];
+/**
+ * Basenames a GLOB `files:` entry never packages into a **skill bundle**.
+ *
+ * Two tiers, deliberately composed here rather than merged at the source:
+ *
+ * - {@link AGENT_INSTRUCTION_FILE_PATTERNS} — never packaged on ANY surface.
+ * - {@link NAVIGATION_FILE_PATTERNS} — never packaged into a *skill bundle*, and
+ *   **only** there. A plugin-root `README.md` is the plugin's front page (measured
+ *   2026-08-02: 50 of 86 installed plugins ship one; 57 of 94 when first measured),
+ *   so the plugin tree-copy must import the agent-instruction list alone. Merging
+ *   the two lists would strip the front page off three in five real plugins. The
+ *   population moves as plugins are installed and removed — the ratio is the load-
+ *   bearing part, so re-measure before citing the count as current.
+ *
+ * Only globs consult this list. Naming `source: README.md` explicitly is an
+ * unambiguous instruction to ship that file; a glob is a net, not a declaration,
+ * and does not get to launder an exemption for a file it never named.
+ */
+export const NEVER_PACKAGE_IN_SKILL_BUNDLE = [
+    ...AGENT_INSTRUCTION_FILE_PATTERNS,
+    ...NAVIGATION_FILE_PATTERNS,
+];
+/**
+ * Build a case-insensitive basename predicate over a fixed pattern list.
+ *
+ * THE matcher every never-package lane shares. Two lanes ask this question — a
+ * glob lane (crawler include/exclude patterns) and a basename lane (`files:`
+ * expansion, broken-link remediation) — and they must not be able to drift: the
+ * glob lane's patterns come from {@link toAnyDepthGlobs} over the same arrays,
+ * and its verdict is asserted equal to this predicate's in the unit tests.
+ *
+ * `toLowerCase()` (not `toLocaleLowerCase()`) is deliberate: the ASCII-only
+ * basenames here must fold identically under every locale, and the Turkish
+ * dotless-i rule would otherwise break `INDEX.md` on a `tr-TR` host.
+ */
+function basenameMatcher(patterns) {
+    const lowered = new Set(patterns.map((pattern) => pattern.toLowerCase()));
+    return (name) => lowered.has(name.toLowerCase());
+}
+/**
+ * Is this basename a navigation file (README/index/toc/overview, any case)?
+ *
+ * Skill-bundle scope only — see {@link NEVER_PACKAGE_IN_SKILL_BUNDLE}.
+ */
+export const isNavigationBasename = basenameMatcher(NAVIGATION_FILE_PATTERNS);
+/**
+ * Is this basename a repo-internal agent-instruction file (CLAUDE.md/AGENTS.md/…, any case)?
+ *
+ * Case-insensitivity is not cosmetic here: on APFS and NTFS, `Claude.md` and
+ * `claude.md` satisfy Claude Code's project-local instruction lookup exactly as
+ * `CLAUDE.md` does, so a case-sensitive check leaves the harm fully reachable.
+ */
+export const isAgentInstructionBasename = basenameMatcher(AGENT_INSTRUCTION_FILE_PATTERNS);
+/**
+ * Is this basename one a GLOB `files:` entry never packages into a skill bundle?
+ *
+ * The basename-lane counterpart of {@link toAnyDepthGlobs}; both read
+ * {@link NEVER_PACKAGE_IN_SKILL_BUNDLE}. Any lane doing a `Set.has(basename)`
+ * against that constant must call this instead — a raw Set is case-sensitive and
+ * is exactly the gap this exists to close.
+ */
+export const isNeverPackagedBasename = basenameMatcher(NEVER_PACKAGE_IN_SKILL_BUNDLE);
+/**
+ * Fold one literal basename into a case-insensitive glob.
+ *
+ * `CLAUDE.md` → `[cC][lL][aA][uU][dD][eE].[mM][dD]`. Bracket classes rather than a
+ * matcher-level `nocase` flag because these patterns travel INTO crawls whose
+ * other patterns (caller excludes, `skills/<dir>/**`) must stay case-sensitive —
+ * picomatch's `nocase` applies to every pattern compiled in the same call, so it
+ * would silently widen those too.
+ */
+function toCaseInsensitiveGlob(name) {
+    return [...name]
+        .map((char) => {
+        const lower = char.toLowerCase();
+        const upper = char.toUpperCase();
+        return lower === upper ? char : `[${lower}${upper}]`;
+    })
+        .join('');
+}
+/**
+ * Expand basenames into globs matching them at the tree root AND at any depth,
+ * **regardless of case**.
+ *
+ * `**\/name` alone is not portable across matchers for a root-level hit, so both
+ * depths are emitted. Shared by the presence detector's include globs and the
+ * plugin tree-copy's exclude globs so the two can never drift apart — and folded
+ * to case-insensitive so neither can be evaded by spelling the file `Claude.md`.
+ */
+export function toAnyDepthGlobs(patterns) {
+    return patterns.flatMap((name) => {
+        const glob = toCaseInsensitiveGlob(name);
+        return [glob, `**/${glob}`];
+    });
+}
 /**
  * Create a validation issue from a rule
  */

package/dist/validators/validation-rules.js.map

@@ -1 +1 @@
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package/dist/validators/walker-to-issues.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"walker-to-issues.d.ts","sourceRoot":"","sources":["../../src/validators/walker-to-issues.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,KAAK,eAAe,EAAE,MAAM,kCAAkC,CAAC;AAGxE,OAAO,KAAK,EAAE,cAAc,EAAE,MAAM,uBAAuB,CAAC;AA2D5D;;;;GAIG;AACH,wBAAgB,wBAAwB,CACtC,UAAU,EAAE,SAAS,cAAc,EAAE,EACrC,YAAY,EAAE,MAAM,GACnB,eAAe,EAAE,CAmBnB;AAED;;;;;GAKG;AACH,wBAAgB,sBAAsB,CACpC,cAAc,EAAE,SAAS,MAAM,EAAE,EACjC,YAAY,EAAE,MAAM,GACnB,eAAe,EAAE,CAKnB"}

package/dist/validators/walker-to-issues.js

@@ -35,6 +35,8 @@ function exclusionToContext(reason, targetExists) {
             return makeRuleContext({ subject: 'edge', fileKind: 'directory' });
         case 'navigation-file':
             return makeRuleContext({ subject: 'edge', fileKind: 'nav' });
+        case 'agent-instruction-file':
+            return makeRuleContext({ subject: 'edge', fileKind: 'agent-instruction' });
         case 'missing-target':
             return makeRuleContext({ subject: 'edge', phase: 'source', existsAtSource: targetExists });
         case 'pattern-matched':

package/dist/validators/walker-to-issues.js.map

@@ -1 +1 @@
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package/dist/walk-link-graph.d.ts

@@ -40,7 +40,7 @@ export interface LinkResolution {
     /** Whether the file will be bundled */
     bundled: boolean;
     /** Reason it was excluded (only set when bundled is false) */
-    excludeReason?: 'depth-exceeded' | 'pattern-matched' | 'directory-target' | 'outside-project' | 'navigation-file' | 'skill-definition' | 'gitignored' | 'missing-target' | undefined;
+    excludeReason?: 'depth-exceeded' | 'pattern-matched' | 'directory-target' | 'outside-project' | 'navigation-file' | 'agent-instruction-file' | 'skill-definition' | 'gitignored' | 'missing-target' | undefined;
     /** The rule that matched (only set for pattern-matched exclusions) */
     matchedRule?: ExcludeRule | undefined;
     /** Link text from the source markdown */

package/dist/walk-link-graph.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"walk-link-graph.d.ts","sourceRoot":"","sources":["../src/walk-link-graph.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;GAUG;AAMH,OAAO,KAAK,EAAE,iBAAiB,EAAgB,gBAAgB,EAAE,MAAM,+BAA+B,CAAC;AACvG,OAAO,EAAE,KAAK,UAAU,EAA0C,MAAM,2BAA2B,CAAC;AAKpG;;GAEG;AACH,MAAM,WAAW,cAAc;IAC7B,yDAAyD;IACzD,IAAI,EAAE,MAAM,CAAC;IACb;;;;;;;OAOG;IACH,UAAU,EAAE,MAAM,CAAC;IACnB,oFAAoF;IACpF,UAAU,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAChC;;;;;;;OAOG;IACH,YAAY,EAAE,OAAO,CAAC;IACtB,uCAAuC;IACvC,OAAO,EAAE,OAAO,CAAC;IACjB,8DAA8D;IAC9D,aAAa,CAAC,EAAE,gBAAgB,GAAG,iBAAiB,GAAG,kBAAkB,GAAG,iBAAiB,GAAG,iBAAiB,GAAG,wBAAwB,GAAG,kBAAkB,GAAG,YAAY,GAAG,gBAAgB,GAAG,SAAS,CAAC;IAChN,sEAAsE;IACtE,WAAW,CAAC,EAAE,WAAW,GAAG,SAAS,CAAC;IACtC,yCAAyC;IACzC,QAAQ,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;IAC9B,sCAAsC;IACtC,QAAQ,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;CAC/B;AAED;;;GAGG;AACH,MAAM,WAAW,WAAW;IAC1B,QAAQ,EAAE,MAAM,EAAE,CAAC;IACnB,QAAQ,CAAC,EAAE,MAAM,GAAG,SAAS,CAAC;CAC/B;AAMD;;;GAGG;AACH,MAAM,WAAW,gBAAgB;IAC/B,eAAe,CAAC,EAAE,EAAE,MAAM,GAAG,gBAAgB,GAAG,SAAS,CAAC;IAC1D,WAAW,CAAC,QAAQ,EAAE,MAAM,GAAG,gBAAgB,GAAG,SAAS,CAAC;CAC7D;AAED;;GAEG;AACH,MAAM,WAAW,eAAe;IAC9B,uDAAuD;IACvD,gBAAgB,EAAE,gBAAgB,EAAE,CAAC;IACrC,oEAAoE;IACpE,aAAa,EAAE,MAAM,EAAE,CAAC;IACxB,iEAAiE;IACjE,kBAAkB,EAAE,cAAc,EAAE,CAAC;IACrC,8CAA8C;IAC9C,eAAe,EAAE,MAAM,CAAC;IACxB,kFAAkF;IAClF,cAAc,EAAE,MAAM,EAAE,CAAC;CAC1B;AAED;;GAEG;AACH,MAAM,WAAW,oBAAoB;IACnC,mEAAmE;IACnE,QAAQ,EAAE,MAAM,CAAC;IACjB,+CAA+C;IAC/C,YAAY,EAAE,WAAW,EAAE,CAAC;IAC5B,iEAAiE;IACjE,WAAW,EAAE,MAAM,CAAC;IACpB;;;;;OAKG;IACH,aAAa,EAAE,MAAM,CAAC;IACtB,sEAAsE;IACtE,sBAAsB,CAAC,EAAE,OAAO,CAAC;IACjC;;;;;;;;;;;;;;;;OAgBG;IACH,iBAAiB,CAAC,EAAE,iBAAiB,CAAC;IACtC;;;;;;;;;;;OAWG;IACH,UAAU,CAAC,EAAE,UAAU,CAAC;CACzB;AAoaD;;;;;;;;;;;;;;GAcG;AACH,wBAAgB,aAAa,CAC3B,eAAe,EAAE,MAAM,EACvB,QAAQ,EAAE,gBAAgB,EAC1B,OAAO,EAAE,oBAAoB,GAC5B,eAAe,CAgDjB"}

package/dist/walk-link-graph.js

@@ -14,7 +14,7 @@ import { basename, dirname } from 'node:path';
 import { isLocalFileLink, resolveLocalHref } from '@vibe-agent-toolkit/resources';
 import { isGitIgnored, toForwardSlash, safePath } from '@vibe-agent-toolkit/utils';
 import picomatch from 'picomatch';
-import { NAVIGATION_FILE_PATTERNS } from './validators/validation-rules.js';
+import { isAgentInstructionBasename, isNavigationBasename } from './validators/validation-rules.js';
 // ============================================================================
 // Internal Helpers
 // ============================================================================
@@ -50,10 +50,10 @@ function resolveHrefToPath(hrefWithoutAnchor, sourceFilePath, projectRoot) {
 function isOutsideProject(targetPath, projectRoot) {
     return safePath.relative(projectRoot, targetPath).startsWith('..');
 }
-/** Check if a filename is a navigation file */
-function isNavigationFile(filename) {
-    return NAVIGATION_FILE_PATTERNS.includes(filename);
-}
+// Navigation / agent-instruction classification is the shared, case-insensitive
+// matcher from validation-rules (`isNavigationBasename` / `isAgentInstructionBasename`),
+// used directly at the call sites below. On APFS/NTFS a `Claude.md` is loaded as
+// instructions exactly as a `CLAUDE.md` is, so the walker must refuse both spellings.
 /** Create an exclusion record */
 function makeExclusion(targetPath, sourcePath, targetExists, reason, link, matchedRule) {
     return {
@@ -97,6 +97,49 @@ function checkDeferred(targetPath, targetExists, deferredArtifacts, deferredAsse
     }
     return false;
 }
+/**
+ * Does the walker refuse to bundle this target because it is a repo-internal
+ * agent-instruction file (`CLAUDE.md`, `AGENTS.md`, `GEMINI.md`)?
+ *
+ * These cannot normally travel in a bundle: they describe the repository they
+ * live in, they collide on basename across packages, and a project-locally
+ * installed skill puts them where Claude Code will load them as instructions.
+ * Deliberately NOT gated on `excludeNavigationFiles` — that knob is about content
+ * granularity, a different question from "this file is not distributable".
+ *
+ * The escape hatch is an EXPLICIT `skills.config.<name>.files` entry naming the
+ * file, and it is honoured HERE rather than "bypassing the walker". It was
+ * documented as a bypass and was not one: the walker refused the LINK whatever the
+ * config said, so an author who declared the file got it shipped, got the link to
+ * it silently stripped from the packaged content, and STILL got a build-failing
+ * error whose own remedy was the thing they had already done. Honouring the
+ * declaration here is what makes that remedy real — the file is bundled,
+ * `applyFilesEntriesToPathMap` re-points it at the declared dest, and the
+ * rewritten link resolves to it.
+ *
+ * "Explicit" is EXACT membership in {@link DeferredArtifacts.sourcePaths},
+ * deliberately NOT the directory-prefix test {@link DeferredArtifacts.covers}
+ * performs. That set registers a GLOB entry by its STATIC BASE — a directory — so
+ * a glob's matches are only ever prefix CHILDREN of what is in the set, while an
+ * explicit `source: notes/CLAUDE.md` is in it verbatim. Exact equality is
+ * therefore precisely the explicit-vs-glob discriminator, and reusing the
+ * already-plumbed `deferredArtifacts` avoids standing up a second model of the
+ * same `files:` config for one lane to drift away from.
+ *
+ * That distinction is load-bearing: naming a file is an unambiguous instruction to
+ * ship it, whereas a glob is a net, not a declaration — it never named the file it
+ * caught and so does not get to launder the exemption an explicit declaration
+ * earns. `partitionNeverPackaged` in files-config.ts draws the same line on the
+ * copy side; both must agree or the two mechanisms disagree about one bundle.
+ */
+function refusesAgentInstructionFile(targetPath, options) {
+    if (!isAgentInstructionBasename(basename(targetPath)))
+        return false;
+    const declaredSources = options.deferredArtifacts?.sourcePaths;
+    if (declaredSources === undefined)
+        return true;
+    return !declaredSources.has(toForwardSlash(safePath.relative(options.projectRoot, targetPath)));
+}
 /**
  * Record a gitignored target as either a leak or an exempted `files:` build
  * artifact — the caller always excludes it from the walk either way; only
@@ -198,10 +241,16 @@ function checkExclusions(targetPath, sourcePath, link, options, excludeMatchers,
         return true;
     }
     // Check navigation file exclusion
-    if (options.excludeNavigationFiles && isNavigationFile(basename(targetPath))) {
+    if (options.excludeNavigationFiles && isNavigationBasename(basename(targetPath))) {
         excludedReferences.push(makeExclusion(targetPath, sourcePath, targetExists, 'navigation-file', link));
         return true;
     }
+    // Repo-internal agent-instruction files — see {@link refusesAgentInstructionFile}
+    // for why they cannot travel, and for the explicit-`files:` escape hatch.
+    if (refusesAgentInstructionFile(targetPath, options)) {
+        excludedReferences.push(makeExclusion(targetPath, sourcePath, targetExists, 'agent-instruction-file', link));
+        return true;
+    }
     // Check for cross-skill SKILL.md links — a SKILL.md is a skill definition marker,
     // not a resource. Bundling another skill's SKILL.md creates duplicate skill definitions
     // in the output, which causes marketplace sync failures and confuses skill consumers.