@venizia/ignis-atlas 0.1.0-9 → 0.1.0

package/README.md

@@ -1,31 +1,15 @@
-<div align="center">
+# @venizia/ignis-atlas
 
-<br />
+An MCP server that lets an AI agent search and read the IGNIS documentation - the wiki, the
+changelogs and the knowledge bundle - and look up exported symbols and versions. Every hit carries
+an id the agent can read in full and cite.
 
-# :fire: IGNIS - `@venizia/ignis-atlas`
+You do not import it. You register it with an MCP client (Claude Code, an IDE agent, ...), which
+starts it over stdio.
 
-**MCP server for IGNIS: search the wiki, changelogs and knowledge bundle, look up an exported symbol, and read what changed between two versions.**
+## Register it
 
-[![Docs](https://img.shields.io/badge/Docs-ignis.venizia.ai-2563EB.svg?style=flat-square)](https://ignis.venizia.ai/extensions/atlas)
-[![npm](https://img.shields.io/npm/v/@venizia/ignis-atlas.svg?style=flat-square&color=cb3837&label=@venizia/ignis-atlas)](https://www.npmjs.com/package/@venizia/ignis-atlas)
-[![License: MIT](https://img.shields.io/badge/License-MIT-3DA639.svg?style=flat-square)](LICENSE.md)
-
-[Atlas on the wiki](https://ignis.venizia.ai/extensions/atlas) &#8226;
-[Changelog](https://ignis.venizia.ai/changelogs/2026-09-06-ignis-atlas)
-
-</div>
-
----
-
-`@venizia/ignis-atlas` answers "what does the manual say" over three corpora - the wiki, the
-changelogs and the agent-facing knowledge bundle - with a citation on every hit, over stdio
-JSON-RPC.
-
-**Bun-only.** The index runs on `bun:sqlite` FTS5, so a Node host cannot start this server.
-
-## Add it to an MCP client
-
-For a published release, run it with `bunx`:
+Add it to the client's MCP config. `bunx` runs the published release:
 
 ```json
 {
@@ -38,10 +22,7 @@ For a published release, run it with `bunx`:
 }
 ```
 
-This reads the wiki and the changelogs packaged with the release you installed, not your working
-tree.
-
-Working inside the IGNIS monorepo, point `command` at the checkout instead:
+Inside an IGNIS checkout, run it from source instead. The repository's own `.mcp.json` does this:
 
 ```json
 {
@@ -54,180 +35,59 @@ Working inside the IGNIS monorepo, point `command` at the checkout instead:
 }
 ```
 
-A checkout also indexes the knowledge bundle, and re-checks the corpus for changes before every
-call.
-
-## Tools
-
-### `search`
-
-Search for chunks matching a keyword query, ranked by relevance.
-
-```
-search({ query: "hidden fields on write" })
-```
-
-```json
-{
-  "total": 395,
-  "returned": 3,
-  "hits": [
-    {
-      "id": "okf:architecture/search-typesense.md#hidden-fields-on-the-write-path",
-      "corpus": "knowledge",
-      "title": "Hidden fields on the write path",
-      "headingPath": "Typesense search connector > Hidden fields on the write path",
-      "anchor": "hidden-fields-on-the-write-path",
-      "snippet": "... Search write responses therefore used to leak hidden properties ...",
-      "score": -16.03
-    }
-  ]
-}
-```
-
-| Input | Type | Default |
-| :--- | :--- | :--- |
-| `query` | string, 2+ characters | required |
-| `corpus` | `all`, `wiki`, `changelog`, `knowledge` | `all` |
-| `limit` | integer, 1-50 | `10` |
-| `offset` | integer, 0+ | `0` |
-
-The reply-size budget can return fewer hits than `limit`. Page with `offset: nextOffset`, not
-`offset + limit` - a page the budget trimmed would otherwise be skipped.
-
-### `get`
+The server needs Bun: its search index is an in-memory `bun:sqlite` FTS5 table. It has no
+dependency on an MCP SDK - it speaks JSON-RPC over stdio itself.
 
-Read one chunk's body by an id a search hit returned, or a whole document with its `#anchor`
-dropped.
-
-```
-get({ id: "okf:architecture/search-typesense.md#hidden-fields-on-the-write-path" })
-```
-
-```json
-{
-  "id": "okf:architecture/search-typesense.md#hidden-fields-on-the-write-path",
-  "title": "Hidden fields on the write path",
-  "headingPath": "Typesense search connector > Hidden fields on the write path",
-  "body": "This is the non-derivable one. Reads exclude `@model({ settings: { hiddenProperties } })` at query time via the engine's exclude-fields parameter - but a write response comes back from the write itself and never passes through that filter. ..."
-}
-```
+## What it serves
 
-| Input | Type | Default |
-| :--- | :--- | :--- |
-| `id` | string, from a search hit | required |
-| `maxChars` | integer, 500-50000 | `8000` |
-| `cursor` | string, from a previous reply's `next` | start of the body |
+The directory the server starts in decides what it reads.
 
-A body longer than `maxChars` returns `next`; pass it back as `cursor` for the following page.
+| Started in | Corpora | Freshness |
+|---|---|---|
+| An IGNIS checkout | `wiki`, `changelog`, `knowledge` - read from `docs/wiki/content` and `.agents/knowledge` | Re-indexes before a tool call when a file changed |
+| Anywhere else | `wiki` and `changelog`, as packaged with the installed release | Fixed at the release |
 
-### `symbol`
+The knowledge bundle is not shipped in the npm package, so `corpus: "knowledge"` returns nothing
+outside a checkout. A checkout of a sibling framework built the same way (its root `package.json`
+named `@venizia/<family>-workspace`) is served too, under the name `<family>-atlas`.
 
-Look up an exported symbol: what it is, where it is declared, and which pages document it.
-
-```
-symbol({ name: "getError", package: "inversion" })
-```
-
-```json
-{
-  "name": "getError",
-  "package": "@venizia/ignis-inversion",
-  "specifier": "@venizia/ignis-inversion",
-  "kind": "const",
-  "file": "packages/inversion/src/modules/error/app-error.ts",
-  "line": 89,
-  "signature": "getError: (opts: TError) => ApplicationError",
-  "docs": ["okf:conventions/error-handling.md#", "wiki:extensions/helpers/error/index.md#in-one-example"]
-}
-```
-
-| Input | Type | Default |
-| :--- | :--- | :--- |
-| `name` | string, the exported name | required |
-| `package` | `helpers` or `@venizia/ignis-helpers` | every package |
-
-The table is generated from each package's built declarations, so `file` and `line` name the
-source. A name exported from several packages returns `matches`. An unknown name is an error
-naming the closest candidates. `docs` ids go straight into `get`.
-
-### `version`
-
-Compare what a project has installed with what this build knows.
-
-```
-version({ cwd: "/path/to/your/project" })
-```
-
-```json
-{
-  "installed": { "@venizia/ignis-kernel": "0.2.0-19" },
-  "snapshot": { "kernel": "0.2.0-21", "helpers": "0.2.0-15" },
-  "behind": [{ "package": "kernel", "installed": "0.2.0-19", "newest": "0.2.0-21" }]
-}
-```
-
-| Input | Type | Default |
-| :--- | :--- | :--- |
-| `cwd` | string, a project directory | the process working directory |
+## Tools
 
-`installed` reads the real version out of `node_modules`, never a dependency range; a package it
-cannot resolve is `null`. These are the versions this build knows about, not the registry.
+| Tool | Input | Returns |
+|---|---|---|
+| `search` | `query` (2+ characters), `corpus?` (`all`, `wiki`, `changelog`, `knowledge`), `limit?` (1-50, default 10), `offset?` | A ranked page of hits: `id`, `corpus`, `title`, `headingPath`, `anchor`, `snippet`, `score`; plus `total`, `returned`, and `nextOffset` when more remain |
+| `get` | `id` (from a hit), `maxChars?` (500-50000, default 8000), `cursor?` | The section's `body`, with `next` when it continues |
+| `symbol` | `name`, `package?` (`helpers` or `@venizia/ignis-helpers`) | Where an exported symbol is declared (`file`, `line`, `signature`, the import `specifier`) and the pages that document it; `matches` when several packages export it |
+| `version` | `cwd?` (a project directory) | The IGNIS versions installed there, the newest this release knows, and which are `behind` |
+| `changes` | `package?`, `from?`, `to?` (versions, or dates) | The changelog entries between two versions |
 
-### `changes`
+Page `search` with `offset: nextOffset`, not `offset + limit`: the reply-size budget can return fewer
+hits than `limit`. Pass a hit's `id` to `get` to read the whole section.
 
-List the changelog entries between two versions of a package.
+## Command line
 
+```bash
+ignis-atlas [mcp] [--root <dir>]
 ```
-changes({ package: "kernel", from: "0.2.0-13", to: "0.2.0-16" })
-```
-
-```json
-{
-  "package": "kernel",
-  "from": "0.2.0-13",
-  "to": "0.2.0-16",
-  "entries": [
-    {
-      "id": "changelog:2026-09-05-boot-checks",
-      "date": "2026-09-05",
-      "title": "Boot Checks - Every Binding Resolves ...",
-      "kind": "New Feature",
-      "packages": ["kernel"]
-    }
-  ]
-}
-```
-
-| Input | Type | Default |
-| :--- | :--- | :--- |
-| `package` | a package directory name | every package |
-| `from` | a version of `package`, or a date without one | the newest version released on an earlier day |
-| `to` | a version of `package`, or a date without one | the newest known version |
-
-Each `id` reads in full through `get`. A window wider than the reply budget is trimmed to the
-newest entries and marked `truncated`.
 
-## `--root`
+`--root` names the checkout to serve. When you pass it, the directory must be a checkout - the
+server exits rather than falling back to the packaged corpus.
 
-`--root <dir>` points the server at an IGNIS checkout. Given explicitly, it must be one: the server
-exits 2 rather than falling back to the packaged snapshot, which would answer from the wrong corpus.
-Without the flag the working directory decides, and a directory that is not a checkout uses the
-snapshot packaged with the release.
+| Exit code | Meaning |
+|---|---|
+| `0` | The client closed the connection |
+| `1` | A failure at startup or while running |
+| `2` | Bad arguments, `--root` is not a checkout, or no corpus was found |
 
-## Exit codes
+## Where it sits
 
-| Code | Meaning |
-| :--- | :--- |
-| `0` | The client closed the connection. |
-| `1` | An error during startup, or while running a tool call. |
-| `2` | Bad arguments, or neither a checkout nor a packaged snapshot was found. |
+Of the IGNIS packages, it depends on `@venizia/ignis-helpers` only. It is a tool for working on
+IGNIS applications, not part of an application's runtime.
 
 ## Links
 
-[Documentation](https://ignis.venizia.ai) &#8226;
-[Atlas on the wiki](https://ignis.venizia.ai/extensions/atlas) &#8226;
-[Changelog](https://ignis.venizia.ai/changelogs/2026-09-06-ignis-atlas)
+- [Atlas on the wiki](https://ignis.venizia.ai/extensions/atlas)
+- [Changelog: IGNIS Atlas](https://ignis.venizia.ai/changelogs/2026-09-06-ignis-atlas)
+- [All changelogs](https://ignis.venizia.ai/changelogs/)
 
-MIT licensed - see [LICENSE.md](LICENSE.md).
-Questions: [GitHub Issues](https://github.com/VENIZIA-AI/ignis/issues) &#8226; developer@venizia.ai
+MIT licensed - see [LICENSE.md](https://github.com/VENIZIA-AI/ignis/blob/main/packages/atlas/LICENSE.md).

package/dist/cjs/corpus/chunker.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"chunker.d.ts","sourceRoot":"","sources":["../../../src/corpus/chunker.ts"],"names":[],"mappings":"AAGA,OAAO,EAAE,UAAU,EAAY,MAAM,6BAA6B,CAAC;AACnE,OAAO,KAAK,EAAE,MAAM,EAAE,SAAS,EAAE,MAAM,UAAU,CAAC;AAqMlD,6MAA6M;AAC7M,eAAO,MAAM,kBAAkB,GAAI,OAAO,MAAM,KAAG,OAKf,CAAC;AAwHrC,+GAA+G;AAC/G,qBAAa,OAAQ,SAAQ,UAAU;IACrC,OAAO,CAAC,MAAM,CAAC,QAAQ,CAAC,CAAU;IAElC,OAAO;IAIP,MAAM,CAAC,WAAW,IAAI,OAAO;IAI7B,KAAK,CAAC,IAAI,EAAE;QAAE,QAAQ,EAAE,SAAS,CAAA;KAAE,GAAG,MAAM,EAAE;CA2C/C"}

package/dist/cjs/corpus/chunker.js

@@ -76,7 +76,8 @@ const splitIntoSections = (opts) => {
         }
         sections.push({ level, title, headingPath, body });
     };
-    for (const line of document.body.split('\n')) {
+    const lines = document.body.split('\n');
+    for (const line of lines) {
         const inFence = fence.consume(line);
         const heading = inFence ? null : line.match(HEADING_PATTERN);
         if (!heading) {
@@ -131,7 +132,8 @@ const splitOversized = (opts) => {
         else {
             current = candidate;
         }
-        for (const line of paragraph.split('\n')) {
+        const lines = paragraph.split('\n');
+        for (const line of lines) {
             fence.consume(line);
         }
     }
@@ -170,7 +172,8 @@ const identifiersOf = (text) => {
         if (!(0, exports.isIdentifierShaped)(match)) {
             continue;
         }
-        for (const segment of match.split('.')) {
+        const segments = match.split('.');
+        for (const segment of segments) {
             if (segment) {
                 tokens.push(segment);
             }
@@ -186,7 +189,8 @@ const symbolsOf = (opts) => {
     const fence = new FenceTracker();
     const rawTokens = [];
     let wasFenced = false;
-    for (const line of opts.body.split('\n')) {
+    const lines = opts.body.split('\n');
+    for (const line of lines) {
         const inFence = fence.consume(line);
         const isFenceOpenLine = inFence && !wasFenced;
         wasFenced = inFence;

package/dist/cjs/corpus/chunker.js.map

@@ -1 +1 @@
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package/dist/cjs/releases/store.d.ts.map

@@ -1 +1 @@
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package/dist/cjs/releases/store.js

@@ -41,7 +41,8 @@ class ReleaseStore extends core_1.BaseHelper {
     constructor(opts) {
         super({ scope: ReleaseStore.name });
         this.releases = new Map();
-        for (const [name, records] of Object.entries(opts.table.releases ?? {})) {
+        const tableReleasesEntries = Object.entries(opts.table.releases ?? {});
+        for (const [name, records] of tableReleasesEntries) {
             this.releases.set((0, exports.toPackageDirectory)(name), records);
         }
         // Newest first, so every window answers in that order without re-sorting.

package/dist/cjs/releases/store.js.map

@@ -1 +1 @@
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package/dist/cjs/search/planner.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"planner.d.ts","sourceRoot":"","sources":["../../../src/search/planner.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,UAAU,CAAC;AA2D3C;;;;GAIG;AACH,qBAAa,YAAY;IACvB,IAAI,CAAC,IAAI,EAAE;QAAE,KAAK,EAAE,MAAM,CAAA;KAAE,GAAG,UAAU;CAI1C"}
+{"version":3,"file":"planner.d.ts","sourceRoot":"","sources":["../../../src/search/planner.ts"],"names":[],"mappings":"AAGA,OAAO,KAAK,EAAE,UAAU,EAAE,MAAM,UAAU,CAAC;AA4D3C;;;;GAIG;AACH,qBAAa,YAAY;IACvB,IAAI,CAAC,IAAI,EAAE;QAAE,KAAK,EAAE,MAAM,CAAA;KAAE,GAAG,UAAU;CAI1C"}

package/dist/cjs/search/planner.js

@@ -19,7 +19,8 @@ const termsOf = (opts) => {
     const phraseTerms = [];
     const bareWords = [];
     let corpus;
-    for (const match of opts.query.matchAll(TOKEN_PATTERN)) {
+    const matches = opts.query.matchAll(TOKEN_PATTERN);
+    for (const match of matches) {
         const [, phrase, word] = match;
         if (phrase !== undefined) {
             phraseTerms.push(quoteTerm(phrase));

package/dist/cjs/search/planner.js.map

@@ -1 +1 @@
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package/dist/cjs/tools/version.tool.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"version.tool.d.ts","sourceRoot":"","sources":["../../../src/tools/version.tool.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,mBAAmB,CAAC;AAEtD,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,YAAY,CAAC;AAqI/C,eAAO,MAAM,gBAAgB,GAAI,MAAM;IAAE,QAAQ,EAAE,YAAY,CAAA;CAAE,KAAG,YAkClE,CAAC"}
+{"version":3,"file":"version.tool.d.ts","sourceRoot":"","sources":["../../../src/tools/version.tool.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,mBAAmB,CAAC;AAEtD,OAAO,KAAK,EAAE,YAAY,EAAE,MAAM,YAAY,CAAC;AAuI/C,eAAO,MAAM,gBAAgB,GAAI,MAAM;IAAE,QAAQ,EAAE,YAAY,CAAA;CAAE,KAAG,YAkClE,CAAC"}

package/dist/cjs/tools/version.tool.js

@@ -62,7 +62,8 @@ const installedVersionOf = (opts) => {
 /** The newest version this build knows for every package in its table. */
 const snapshotOf = (opts) => {
     const snapshot = {};
-    for (const name of opts.releases.packages().filter(candidate => opts.live.includes(candidate))) {
+    const names = opts.releases.packages().filter(candidate => opts.live.includes(candidate));
+    for (const name of names) {
         const newest = opts.releases.newestOf({ package: name });
         if (newest) {
             snapshot[name] = newest.version;
@@ -76,7 +77,8 @@ const snapshotOf = (opts) => {
  */
 const behindOf = (opts) => {
     const rows = [];
-    for (const [name, version] of Object.entries(opts.installed)) {
+    const installedEntries = Object.entries(opts.installed);
+    for (const [name, version] of installedEntries) {
         const directory = (0, releases_1.toPackageDirectory)(name);
         const newest = opts.snapshot[directory];
         if (version === null || newest === undefined) {

package/dist/cjs/tools/version.tool.js.map

@@ -1 +1 @@
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package/dist/corpus/changelogs/2025-12-31-json-path-filtering-array-operators.md

@@ -209,6 +209,6 @@ All changes are additive enhancements. Existing filter queries work unchanged.
 ## Documentation
 
 Full documentation with examples available at:
-- [Repositories - JSON Path Filtering](/references/base/repositories/#json-path-filtering)
-- [Repositories - Array Column Operators](/references/base/repositories/#array-column-operators-postgresql)
-- [Repositories - Query Operators](/references/base/repositories/#query-operators)
+- [Repositories - JSON Path Filtering](/references/base/filter-system/json-filtering)
+- [Repositories - Array Column Operators](/references/base/filter-system/array-operators)
+- [Repositories - Query Operators](/references/base/filter-system/quick-reference)

package/dist/corpus/changelogs/2026-09-12-blank-env-at-module-load.md

@@ -0,0 +1,88 @@
+---
+title: A Blank Env Line No Longer Beats Its Default At Module Load
+description: Ten framework reads of process.env treated an empty line as a value. The worst of them turned the whole of process.env into the application environment map.
+---
+
+# Changelog - 2026-09-12
+
+## A blank env line no longer beats its default at module load
+
+<Badge type="warning" text="Fix" />
+
+**In one line.** The [earlier fix today](./2026-09-12-env-reads-what-it-promises) taught
+`applicationEnvironment.get()` that `KEY=` means missing. Ten framework constants never went through
+`get()` - they read `process.env` directly at module load, with `??`, which an empty string walks
+straight past.
+
+```ts
+// APP_ENV_APPLICATION_TIMEZONE=      (present, empty)
+const tz = process.env.APP_ENV_APPLICATION_TIMEZONE ?? 'Asia/Ho_Chi_Minh';
+// before: ''      after: 'Asia/Ho_Chi_Minh'
+```
+
+## The one that matters most has nothing to do with formatting
+
+`ApplicationEnvironment` filters `process.env` by a prefix, and that prefix was read the same way:
+
+```ts
+prefix: process.env.APPLICATION_ENV_PREFIX ?? 'APP_ENV';
+```
+
+Export `APPLICATION_ENV_PREFIX=` empty and the prefix becomes `''`. Every name starts with the empty
+string, so the map stops filtering:
+
+```
+prefix blank  -> keys: APP_ENV_A, PATH, HOME, AWS_SECRET_ACCESS_KEY, ...
+prefix normal -> keys: APP_ENV_A
+```
+
+Two things follow. `validateEnvs` iterates exactly that list, so boot fails on the first unrelated
+empty system variable rather than on anything you configured. And `applicationEnvironment.keys()`
+starts publishing the names of every secret on the host.
+
+## What changed, and a new export you can use
+
+Each of the ten reads now treats a blank line as absent, whitespace included:
+
+```ts
+blankToUndefined(process.env.APP_ENV_LOGGER_FORMAT) ?? 'text';
+```
+
+| Where | Names |
+|-------|-------|
+| `@venizia/ignis-helpers` | `APPLICATION_ENV_PREFIX`, `APP_ENV_APPLICATION_TIMEZONE`, and five winston plus one pino logger settings |
+| `@venizia/ignis` | `APP_ENV_APPLICATION_NAME`, and every name the startup banner prints |
+
+`blankToUndefined` is new, and exported - from the root barrel and from
+`@venizia/ignis-helpers/core`, since it is pure. It answers `undefined` for `undefined`, `''` and
+whitespace, and a trimmed string otherwise:
+
+```ts
+import { blankToUndefined } from '@venizia/ignis-helpers/core';
+
+const host = blankToUndefined(process.env.APP_ENV_REDIS_HOST) ?? 'localhost';
+```
+
+The obvious shorter fix, `process.env.X || 'text'`, was written first and rejected by this
+repository's own `@typescript-eslint/prefer-nullish-coalescing` rule - correctly, because `||` also
+swallows `'0'`. Reach for `blankToUndefined` instead of `||` for exactly that reason: it says
+"blank", not "falsy", so a numeric setting where zero is meaningful stays safe.
+
+An environment value read through `applicationEnvironment.get(key, { defaultValue })` already gets
+this treatment and needs no wrapper.
+
+## Who is affected
+
+**You leave these names unset.** Nothing changes. `??` and `||` agree on `undefined`.
+
+**A deployment of yours sets one of them to empty.** You now get the documented default instead of a
+blank, which is what the empty line was always trying to say.
+
+**You set `APPLICATION_ENV_PREFIX` to a real prefix.** Unchanged, still honoured.
+
+**Files:**
+
+- [`packages/helpers/src/modules/env/app-env.ts`](https://github.com/VENIZIA-AI/ignis/blob/main/packages/helpers/src/modules/env/app-env.ts) - `resolveApplicationEnvironment`
+- [`packages/helpers/src/utilities/date.utility.ts`](https://github.com/VENIZIA-AI/ignis/blob/helpers-v0.2.0-21/packages/helpers/src/utilities/date.utility.ts) - the default timezone, as released (the file is gone since 2026-09-19)
+- [`packages/helpers/src/modules/logger/winston/common/constants.ts`](https://github.com/VENIZIA-AI/ignis/blob/main/packages/helpers/src/modules/logger/winston/common/constants.ts) - the file-rotation settings
+- [`packages/core-server/src/base/applications/base.ts`](https://github.com/VENIZIA-AI/ignis/blob/main/packages/core-server/src/base/applications/base.ts) - `printStartUpInfo`