@velvetmonkey/flywheel-memory 2.5.10 → 2.5.11

package/dist/index.js

@@ -1,12 +1,6 @@
 #!/usr/bin/env node
 var __defProp = Object.defineProperty;
 var __getOwnPropNames = Object.getOwnPropertyNames;
-var __require = /* @__PURE__ */ ((x) => typeof require !== "undefined" ? require : typeof Proxy !== "undefined" ? new Proxy(x, {
-  get: (a, b) => (typeof require !== "undefined" ? require : a)[b]
-}) : x)(function(x) {
-  if (typeof require !== "undefined") return require.apply(this, arguments);
-  throw Error('Dynamic require of "' + x + '" is not supported');
-});
 var __esm = (fn, res) => function __init() {
   return fn && (res = (0, fn[__getOwnPropNames(fn)[0]])(fn = 0)), res;
 };
@@ -283,6 +277,8 @@ var init_vault_scope = __esm({
 import * as crypto from "crypto";
 import * as fs3 from "fs";
 import * as path2 from "path";
+import { Worker } from "node:worker_threads";
+import { fileURLToPath } from "node:url";
 function getModelConfig() {
   const envModel = process.env.EMBEDDING_MODEL?.trim();
   if (!envModel) return MODEL_REGISTRY[DEFAULT_MODEL];
@@ -334,92 +330,115 @@ function clearEmbeddingsForRebuild() {
 function setEmbeddingsDatabase(database) {
   db = database;
 }
-function clearModelCache(modelId) {
-  try {
-    const candidates = [];
-    try {
-      const transformersDir = path2.dirname(__require.resolve("@huggingface/transformers/package.json"));
-      candidates.push(path2.join(transformersDir, ".cache", ...modelId.split("/")));
-    } catch {
-    }
-    const home = process.env.HOME || process.env.USERPROFILE || "";
-    if (home) {
-      const npxDir = path2.join(home, ".npm", "_npx");
-      if (fs3.existsSync(npxDir)) {
-        for (const hash of fs3.readdirSync(npxDir)) {
-          const candidate = path2.join(npxDir, hash, "node_modules", "@huggingface", "transformers", ".cache", ...modelId.split("/"));
-          if (fs3.existsSync(candidate)) candidates.push(candidate);
-        }
-      }
-    }
-    for (const cacheDir of candidates) {
-      if (fs3.existsSync(cacheDir)) {
-        fs3.rmSync(cacheDir, { recursive: true, force: true });
-        console.error(`[Semantic] Deleted corrupted model cache: ${cacheDir}`);
-      }
-    }
-  } catch (e) {
-    console.error(`[Semantic] Could not clear model cache: ${e instanceof Error ? e.message : e}`);
-  }
+function resolveWorkerPath() {
+  const thisFile = typeof __filename !== "undefined" ? __filename : fileURLToPath(import.meta.url);
+  const thisDir = path2.dirname(thisFile);
+  const workerPath = path2.join(thisDir, "embedding-worker.js");
+  if (fs3.existsSync(workerPath)) return workerPath;
+  const devPath = path2.resolve(thisDir, "..", "..", "..", "dist", "embedding-worker.js");
+  if (fs3.existsSync(devPath)) return devPath;
+  throw new Error(
+    `Embedding worker not found at ${workerPath}. Run 'npm run build' to generate it.`
+  );
 }
 async function initEmbeddings() {
-  if (pipeline) return;
-  if (initPromise) return initPromise;
-  initPromise = (async () => {
-    const MAX_RETRIES = 3;
-    const RETRY_DELAYS = [2e3, 5e3, 1e4];
-    let cacheCleared = false;
-    for (let attempt = 1; attempt <= MAX_RETRIES; attempt++) {
-      try {
-        const transformers = await Function("specifier", "return import(specifier)")("@huggingface/transformers");
-        console.error(`[Semantic] Loading model ${activeModelConfig.id} (~23MB, cached after first download)...`);
-        pipeline = await transformers.pipeline("feature-extraction", activeModelConfig.id, {
-          dtype: "fp32"
-        });
-        console.error(`[Semantic] Model loaded successfully`);
-        if (activeModelConfig.dims === 0) {
-          const probe = await pipeline("test", { pooling: "mean", normalize: true });
-          activeModelConfig.dims = probe.data.length;
-          console.error(`[Semantic] Probed model ${activeModelConfig.id}: ${activeModelConfig.dims} dims`);
-        }
-        return;
-      } catch (err) {
-        if (err instanceof Error && (err.message.includes("Cannot find package") || err.message.includes("MODULE_NOT_FOUND") || err.message.includes("Cannot find module") || err.message.includes("ERR_MODULE_NOT_FOUND"))) {
-          initPromise = null;
-          throw new Error(
-            "Semantic search requires @huggingface/transformers. Install it with: npm install @huggingface/transformers"
-          );
+  if (workerReady && worker) return;
+  if (workerInitPromise) return workerInitPromise;
+  workerInitPromise = new Promise((resolve3, reject) => {
+    try {
+      const workerPath = resolveWorkerPath();
+      console.error(`[Semantic] Spawning embedding worker: ${workerPath}`);
+      worker = new Worker(workerPath);
+      worker.on("message", (msg) => {
+        switch (msg.type) {
+          case "ready":
+            workerReady = true;
+            workerDims = msg.dims;
+            if (activeModelConfig.dims === 0) {
+              activeModelConfig.dims = msg.dims;
+              console.error(`[Semantic] Probed model ${activeModelConfig.id}: ${msg.dims} dims`);
+            }
+            console.error(`[Semantic] Worker ready (model: ${activeModelConfig.id}, dims: ${msg.dims})`);
+            resolve3();
+            break;
+          case "result": {
+            const pending = pendingEmbeds.get(msg.id);
+            if (pending) {
+              pendingEmbeds.delete(msg.id);
+              pending.resolve(new Float32Array(msg.embedding));
+            }
+            break;
+          }
+          case "error": {
+            if (msg.fatal) {
+              console.error(`[Semantic] Worker fatal error: ${msg.message}`);
+              console.error(`[Semantic] Semantic search disabled. Keyword search (BM25) remains available.`);
+              terminateWorker();
+              workerInitPromise = null;
+              reject(new Error(msg.message));
+            } else if (msg.id != null) {
+              const pending = pendingEmbeds.get(msg.id);
+              if (pending) {
+                pendingEmbeds.delete(msg.id);
+                pending.reject(new Error(msg.message));
+              }
+            }
+            break;
+          }
         }
-        const errMsg = err instanceof Error ? err.message : String(err);
-        if (!cacheCleared && (errMsg.includes("Protobuf parsing failed") || errMsg.includes("onnx"))) {
-          console.error(`[Semantic] Corrupted model cache detected: ${errMsg}`);
-          clearModelCache(activeModelConfig.id);
-          cacheCleared = true;
-          pipeline = null;
-          continue;
+      });
+      worker.on("error", (err) => {
+        console.error(`[Semantic] Worker error: ${err.message}`);
+        handleWorkerCrash();
+        if (!workerReady) {
+          workerInitPromise = null;
+          reject(err);
         }
-        if (attempt < MAX_RETRIES) {
-          const delay = RETRY_DELAYS[attempt - 1];
-          console.error(`[Semantic] Model load failed (attempt ${attempt}/${MAX_RETRIES}): ${errMsg}`);
-          console.error(`[Semantic] Retrying in ${delay / 1e3}s...`);
-          await new Promise((resolve2) => setTimeout(resolve2, delay));
-          pipeline = null;
-        } else {
-          console.error(`[Semantic] Model load failed after ${MAX_RETRIES} attempts: ${err instanceof Error ? err.message : err}`);
-          console.error(`[Semantic] Semantic search disabled. Keyword search (BM25) remains available.`);
-          initPromise = null;
-          throw err;
+      });
+      worker.on("exit", (code) => {
+        if (code !== 0 && workerReady) {
+          console.error(`[Semantic] Worker exited with code ${code}`);
+          handleWorkerCrash();
         }
-      }
+      });
+      worker.postMessage({ type: "init", modelId: activeModelConfig.id });
+    } catch (err) {
+      workerInitPromise = null;
+      reject(err);
     }
-  })();
-  return initPromise;
+  });
+  return workerInitPromise;
+}
+function handleWorkerCrash() {
+  for (const [id, pending] of pendingEmbeds) {
+    pending.reject(new Error("Embedding worker crashed"));
+    pendingEmbeds.delete(id);
+  }
+  worker = null;
+  workerReady = false;
+  workerInitPromise = null;
+}
+function terminateWorker() {
+  if (worker) {
+    try {
+      worker.postMessage({ type: "shutdown" });
+    } catch {
+    }
+    worker = null;
+  }
+  workerReady = false;
+  workerInitPromise = null;
 }
 async function embedText(text) {
   await initEmbeddings();
-  const truncated = text.slice(0, 2e3);
-  const result = await pipeline(truncated, { pooling: "mean", normalize: true });
-  return new Float32Array(result.data);
+  if (!worker) {
+    throw new Error("Embedding worker not available");
+  }
+  const id = ++embedRequestId;
+  return new Promise((resolve3, reject) => {
+    pendingEmbeds.set(id, { resolve: resolve3, reject });
+    worker.postMessage({ type: "embed", id, text });
+  });
 }
 async function embedTextCached(text) {
   const existing = embeddingCache.get(text);
@@ -1116,7 +1135,7 @@ function getEntityEmbeddingsCount() {
     return 0;
   }
 }
-var MODEL_REGISTRY, DEFAULT_MODEL, activeModelConfig, MAX_FILE_SIZE2, db, pipeline, initPromise, embeddingsBuilding, embeddingCache, EMBEDDING_CACHE_MAX, entityEmbeddingsMap, inferredCategoriesMap, EMBEDDING_TEXT_VERSION;
+var MODEL_REGISTRY, DEFAULT_MODEL, activeModelConfig, MAX_FILE_SIZE2, db, embeddingsBuilding, worker, workerReady, workerDims, workerInitPromise, embedRequestId, pendingEmbeds, embeddingCache, EMBEDDING_CACHE_MAX, entityEmbeddingsMap, inferredCategoriesMap, EMBEDDING_TEXT_VERSION;
 var init_embeddings = __esm({
   "src/core/read/embeddings.ts"() {
     "use strict";
@@ -1133,9 +1152,13 @@ var init_embeddings = __esm({
     activeModelConfig = getModelConfig();
     MAX_FILE_SIZE2 = 5 * 1024 * 1024;
     db = null;
-    pipeline = null;
-    initPromise = null;
     embeddingsBuilding = false;
+    worker = null;
+    workerReady = false;
+    workerDims = 0;
+    workerInitPromise = null;
+    embedRequestId = 0;
+    pendingEmbeds = /* @__PURE__ */ new Map();
     embeddingCache = /* @__PURE__ */ new Map();
     EMBEDDING_CACHE_MAX = 500;
     entityEmbeddingsMap = /* @__PURE__ */ new Map();
@@ -1255,9 +1278,12 @@ function saveRecencyToStateDb(index, explicitStateDb) {
   }
   console.error(`[Flywheel] saveRecencyToStateDb: Saving ${index.lastMentioned.size} entries...`);
   try {
-    for (const [entityNameLower, timestamp] of index.lastMentioned) {
-      recordEntityMention(stateDb2, entityNameLower, new Date(timestamp));
-    }
+    const runInTransaction = stateDb2.db.transaction(() => {
+      for (const [entityNameLower, timestamp] of index.lastMentioned) {
+        recordEntityMention(stateDb2, entityNameLower, new Date(timestamp));
+      }
+    });
+    runInTransaction();
     const count = stateDb2.db.prepare("SELECT COUNT(*) as cnt FROM recency").get();
     console.error(`[Flywheel] Saved recency: ${index.lastMentioned.size} entries \u2192 ${count.cnt} rows in table`);
   } catch (e) {
@@ -1930,18 +1956,18 @@ function updateSuppressionList(stateDb2, now) {
       `DELETE FROM wikilink_suppressions
        WHERE datetime(updated_at, '+' || ? || ' days') <= datetime('now')`
     ).run(SUPPRESSION_TTL_DAYS);
-    for (const stat5 of weightedStats) {
-      const effectiveAlpha = getEffectiveAlpha(stat5.entity);
-      const posteriorMean = computePosteriorMean(stat5.weightedCorrect, stat5.weightedFp, effectiveAlpha);
-      const totalObs = effectiveAlpha + stat5.weightedCorrect + PRIOR_BETA + stat5.weightedFp;
+    for (const stat4 of weightedStats) {
+      const effectiveAlpha = getEffectiveAlpha(stat4.entity);
+      const posteriorMean = computePosteriorMean(stat4.weightedCorrect, stat4.weightedFp, effectiveAlpha);
+      const totalObs = effectiveAlpha + stat4.weightedCorrect + PRIOR_BETA + stat4.weightedFp;
       if (totalObs < SUPPRESSION_MIN_OBSERVATIONS) {
         continue;
       }
       if (posteriorMean < SUPPRESSION_POSTERIOR_THRESHOLD) {
-        upsert.run(stat5.entity, 1 - posteriorMean);
+        upsert.run(stat4.entity, 1 - posteriorMean);
         updated++;
       } else {
-        remove.run(stat5.entity);
+        remove.run(stat4.entity);
       }
     }
   });
@@ -2011,31 +2037,31 @@ function getAllFeedbackBoosts(stateDb2, folder, now) {
   if (folder !== void 0) {
     folderStatsMap = /* @__PURE__ */ new Map();
     for (const gs of globalStats) {
-      const fs35 = getWeightedFolderStats(stateDb2, gs.entity, folder, now);
-      if (fs35.rawTotal >= FEEDBACK_BOOST_MIN_SAMPLES) {
+      const fs36 = getWeightedFolderStats(stateDb2, gs.entity, folder, now);
+      if (fs36.rawTotal >= FEEDBACK_BOOST_MIN_SAMPLES) {
         folderStatsMap.set(gs.entity, {
-          weightedAccuracy: fs35.weightedAccuracy,
-          rawCount: fs35.rawTotal
+          weightedAccuracy: fs36.weightedAccuracy,
+          rawCount: fs36.rawTotal
         });
       }
     }
   }
   const boosts = /* @__PURE__ */ new Map();
-  for (const stat5 of globalStats) {
-    if (stat5.rawTotal < FEEDBACK_BOOST_MIN_SAMPLES) continue;
+  for (const stat4 of globalStats) {
+    if (stat4.rawTotal < FEEDBACK_BOOST_MIN_SAMPLES) continue;
     let accuracy;
     let sampleCount;
-    const fs35 = folderStatsMap?.get(stat5.entity);
-    if (fs35 && fs35.rawCount >= FEEDBACK_BOOST_MIN_SAMPLES) {
-      accuracy = fs35.weightedAccuracy;
-      sampleCount = fs35.rawCount;
+    const fs36 = folderStatsMap?.get(stat4.entity);
+    if (fs36 && fs36.rawCount >= FEEDBACK_BOOST_MIN_SAMPLES) {
+      accuracy = fs36.weightedAccuracy;
+      sampleCount = fs36.rawCount;
     } else {
-      accuracy = stat5.weightedAccuracy;
-      sampleCount = stat5.rawTotal;
+      accuracy = stat4.weightedAccuracy;
+      sampleCount = stat4.rawTotal;
     }
     const boost = computeBoostFromAccuracy(accuracy, sampleCount);
     if (boost !== 0) {
-      boosts.set(stat5.entity, boost);
+      boosts.set(stat4.entity, boost);
     }
   }
   return boosts;
@@ -2043,18 +2069,18 @@ function getAllFeedbackBoosts(stateDb2, folder, now) {
 function getAllSuppressionPenalties(stateDb2, now) {
   const penalties = /* @__PURE__ */ new Map();
   const weightedStats = getWeightedEntityStats(stateDb2, now);
-  for (const stat5 of weightedStats) {
-    const effectiveAlpha = getEffectiveAlpha(stat5.entity);
-    const posteriorMean = computePosteriorMean(stat5.weightedCorrect, stat5.weightedFp, effectiveAlpha);
-    const totalObs = effectiveAlpha + stat5.weightedCorrect + PRIOR_BETA + stat5.weightedFp;
+  for (const stat4 of weightedStats) {
+    const effectiveAlpha = getEffectiveAlpha(stat4.entity);
+    const posteriorMean = computePosteriorMean(stat4.weightedCorrect, stat4.weightedFp, effectiveAlpha);
+    const totalObs = effectiveAlpha + stat4.weightedCorrect + PRIOR_BETA + stat4.weightedFp;
     if (totalObs >= SUPPRESSION_MIN_OBSERVATIONS) {
       if (posteriorMean < SUPPRESSION_POSTERIOR_THRESHOLD) {
         const penalty = Math.round(MAX_SUPPRESSION_PENALTY * (1 - posteriorMean / SUPPRESSION_POSTERIOR_THRESHOLD));
         if (penalty < 0) {
-          penalties.set(stat5.entity, penalty);
+          penalties.set(stat4.entity, penalty);
         }
       } else if (posteriorMean < SOFT_PENALTY_THRESHOLD) {
-        penalties.set(stat5.entity, SOFT_PENALTY);
+        penalties.set(stat4.entity, SOFT_PENALTY);
       }
     }
   }
@@ -2632,8 +2658,8 @@ function clearLastMutationCommit() {
 async function checkGitLock(vaultPath2) {
   const lockPath = path10.join(vaultPath2, ".git/index.lock");
   try {
-    const stat5 = await fs6.stat(lockPath);
-    const ageMs = Date.now() - stat5.mtimeMs;
+    const stat4 = await fs6.stat(lockPath);
+    const ageMs = Date.now() - stat4.mtimeMs;
     return {
       locked: true,
       stale: ageMs > STALE_LOCK_THRESHOLD_MS,
@@ -2655,8 +2681,8 @@ async function isGitRepo(vaultPath2) {
 async function checkLockFile(vaultPath2) {
   const lockPath = path10.join(vaultPath2, ".git/index.lock");
   try {
-    const stat5 = await fs6.stat(lockPath);
-    const ageMs = Date.now() - stat5.mtimeMs;
+    const stat4 = await fs6.stat(lockPath);
+    const ageMs = Date.now() - stat4.mtimeMs;
     return { stale: ageMs > STALE_LOCK_THRESHOLD_MS, ageMs };
   } catch {
     return null;
@@ -2670,7 +2696,7 @@ function isLockContentionError(error) {
   return false;
 }
 function sleep(ms) {
-  return new Promise((resolve2) => setTimeout(resolve2, ms));
+  return new Promise((resolve3) => setTimeout(resolve3, ms));
 }
 function calculateDelay(attempt, config2) {
   let delay = config2.baseDelayMs * Math.pow(2, attempt);
@@ -4672,8 +4698,8 @@ async function applyProactiveSuggestions(filePath, vaultPath2, suggestions, conf
   }
   const fullPath = path11.join(vaultPath2, filePath);
   try {
-    const stat5 = await fs7.stat(fullPath);
-    if (Date.now() - stat5.mtimeMs < 3e4) {
+    const stat4 = await fs7.stat(fullPath);
+    if (Date.now() - stat4.mtimeMs < 3e4) {
       return { applied: [], skipped: candidates.map((c) => c.entity) };
     }
   } catch {
@@ -5081,8 +5107,8 @@ var init_tool_embeddings_generated = __esm({
       model: "Xenova/all-MiniLM-L6-v2",
       dims: 384,
       version: 1,
-      generatedAt: "2026-04-03T22:38:15.295Z",
-      sourceHash: "1fb6c9a93b42b358",
+      generatedAt: "2026-04-06T22:11:22.074Z",
+      sourceHash: "55904c4f8b00ff85",
       tools: [
         { name: "absorb_as_alias", category: "corrections", tier: 2, descriptionHash: "27554e8b6b3bb1a4", embedding: [-0.087313, -0.015109, 0.022541, 8661e-6, -0.024621, -0.027376, -9959e-6, -4143e-6, 0.020362, -0.025815, 0.03722, -0.017272, 0.010364, -0.082973, 0.063234, 0.105669, 0.030314, 0.109193, -0.024833, -0.022116, 0.020565, 0.067968, -0.013485, -4453e-6, 0.023703, -0.012531, -0.110704, 0.046425, 0.037009, -0.100492, 0.057064, 0.106952, -0.064645, 0.032072, 0.011054, 0.113279, 6113e-6, 2155e-6, 0.052647, -0.037832, 0.032187, -6735e-6, -0.027158, -0.033756, -0.071285, -0.025865, -0.040482, 0.02512, -0.037086, 4166e-6, -0.012929, -0.07895, -0.101903, 0.085107, -0.014636, 0.091582, -0.052795, 0.05756, -0.057044, -2231e-6, -0.013445, 2289e-6, -77e-5, -0.049304, -0.013433, -0.01156, 0.039263, 0.055036, -228e-5, -0.021411, 0.025402, -0.015392, -0.016927, -0.01263, 0.016506, 5128e-6, -0.045499, 0.041929, -0.098371, -0.102299, -0.05505, -0.021133, -0.011038, -0.045412, 0.051449, 0.043985, -0.026773, -0.061248, -0.013004, 0.020089, 0.020349, -0.049656, 0.14248, -0.023849, 1326e-6, 0.038924, 0.015142, -0.027207, 0.137747, 0.086333, -0.051942, 0.125201, -0.015227, 0.035816, -0.016593, -3143e-6, 0.016584, 0.057709, 3425e-6, -0.086785, 0.077055, 0.012249, 0.054973, -0.041238, 0.036758, -0.018482, 0.017911, -0.025632, 0.070721, -0.025979, 0.090299, 0.013505, -0.015338, 0.035118, -0.062938, -55e-6, -0.031485, 0, 0.048271, 0.118939, -7432e-6, -0.027482, -0.017351, -2898e-6, -0.036961, -3044e-6, -0.032485, -0.039268, 8085e-6, -0.01109, 0.025195, 273e-6, -0.081679, -0.043759, -1642e-6, 0.133163, 0.054599, 0.052329, -0.014879, 0.066345, -0.063461, 0.046176, -6885e-6, 0.050879, -0.032148, -0.03098, -0.01647, 2323e-6, -0.012937, 0.020916, 0.05669, 0.050599, -0.012922, 0.029857, -0.023119, -0.056459, -0.052397, -0.063056, 0.032488, 0.063419, 5355e-6, -0.081225, -2636e-6, -0.051448, -0.01502, 0.046703, 0.158323, -0.016006, 0.054453, -5225e-6, 0.055346, 3194e-6, -0.055126, -0.047608, -0.027439, -6931e-6, 0.015054, 0.070964, 0.016329, -7436e-6, -0.087056, 0.0326, -8886e-6, 0.069308, 1744e-6, -0.031456, 0.05816, -0.024318, -0.084045, 0.034875, -0.052924, 0.060689, -0.020979, -0.137039, -0.069438, 4228e-6, 0.103073, 0.026546, -0.043743, 0.015869, -1255e-6, -0.020976, -0.036293, 0.019493, 0.019183, -0.167767, -0.047504, -0.043037, -0.05305, -0.011494, 0.020628, -0.029303, 0.066295, -0, 0.06668, 6677e-6, -0.027402, 0.074721, -0.071961, 0.022582, 0.074355, 0.042852, -0.025373, 0.034536, 0.017667, -0.010542, -4169e-6, -0.083182, -2746e-6, -0.053237, 0.041962, -0.041424, -0.037738, 0.075779, 7597e-6, -0.035105, 0.089325, 0.059282, 0.087981, 0.014721, -6421e-6, -0.050171, 0.022545, -0.066806, 0.053691, -0.046373, -0.066624, -0.05594, -2923e-6, -0.072017, -0.035938, -0.031965, -0.078192, -0.01764, 0.047027, 0.05296, -0.039368, 0.060137, -0.014895, 2928e-6, -0.053409, 0.059899, -0.071938, -0.084993, 0.014731, -9255e-6, -0.012538, -0.057773, -0.01937, 0.011484, 0.118908, -4683e-6, -0.101681, -0.030016, 0.04375, 0.078497, -0.024205, -4214e-6, 0.041916, -0.032365, -0.03231, -8687e-6, -0.054573, 9854e-6, 3192e-6, -0.041575, 0.030278, -0.063586, 0.050707, -0.033235, 0.028844, -0.078475, -0.046236, 0.019996, -0.103771, -0.031058, 0.036113, 0.053975, -0.013333, -0.037514, -0.05237, 0.069865, -0.022002, 0.043238, -0.058168, -0.01832, 0.065564, 0.052553, -0.016286, -0, -0.060219, 0.015225, -0.044145, 0.023352, -0.052523, -0.013584, -0.073037, -0.033518, -0.01456, -7575e-6, 2766e-6, -0.030461, -0.045765, -0.042223, -0.032423, -0.03025, 0.020423, 0.066116, -0.085401, -0.038306, -0.12109, 0.040213, 131e-6, -0.04345, 0.070947, 0.014882, 7721e-6, 0.088877, 0.047515, -0.074231, 0.048281, -648e-6, 0.016151, 0.047549, -1148e-6, 0.028044, 0.088863, 0.014517, 0.022091, 0.123896, 0.05443, 0.032042, -0.05105, 0.069732, 0.057286, -0.060648, 108e-5, -0.050034, 0.03852, -0.017144, 0.024196, -0.032345, -0.031836, -0.030237, -0.01748, -1953e-6, 0.045463, 0.059662, 0.020283, -603e-5, 0.145025, -0.031073, 0.069219, 0.012386] },
         { name: "brief", category: "memory", tier: 1, descriptionHash: "cd54c8b5f8962c0c", embedding: [-0.03413, 0.038967, -0.058868, 5065e-6, 0.013581, -9201e-6, 0.12418, 0.084974, 0.0466, -0.027719, -0.03003, 2981e-6, -0.019524, 6126e-6, 0.121445, 0.030564, 0.113974, -0.019305, 0.010584, 0.022772, 0.040912, 0.049654, 0.012009, 0.014554, -317e-6, 0.010126, -0.084735, -1667e-6, 0.083471, -7537e-6, 0.013307, 0.106008, 0.040402, 0.065893, -0.017905, 0.099291, 0.017319, 0.015036, -6372e-6, -0.066617, -0.060547, -0.011005, -0.057781, 0.076661, 9708e-6, -0.045502, -0.044302, -9454e-6, -0.045664, 9896e-6, -0.053175, 0.012171, -0.021067, 0.071767, -8367e-6, 0.128232, -5307e-6, 0.069086, -0.038624, 0.028583, -0.068574, -0.100884, -0.052176, 0.044373, -0.012476, 0.041925, 0.032421, 9466e-6, 0.055237, -0.135804, -0.045271, -0.032277, -0.034088, 0.044972, -0.037657, 0.01615, 0.023087, -0.047546, 5856e-6, -0.118672, -0.013503, 0.027683, 0.021988, 623e-5, -9077e-6, -0.021581, 0.013314, -0.037775, -9507e-6, 0.037748, 85e-5, -0.052845, -7436e-6, 0.03521, 1699e-6, 0.028288, -0.035951, -0.049538, 3357e-6, 0.065678, 0.059998, 0.099599, 0.012784, 0.041595, -0.076292, -0.037029, -0.037229, 0.013993, -0.035633, 4893e-6, -0.057584, 0.047254, -0.010266, -0.037457, 0.077024, -0.074891, -0.038335, -0.034745, 0.026768, 0.120412, 0.06315, -0.034399, -0.048602, -0.025597, -0.086307, -0.035078, 0.03381, 0, 0.074016, -5576e-6, -0.035261, 0.135218, 8885e-6, 0.058899, -0.020769, -0.018972, -0.036681, -0.017513, 0.022473, 0.099641, -0.01237, 0.02122, 0.020966, -0.011241, -0.106938, 0.129492, 0.066344, -0.036365, -0.033113, -6609e-6, -6963e-6, -335e-5, 0.113098, 0.012043, 0.013074, -0.05108, -0.02582, 0.038526, -0.04915, -0.044315, -0.060091, -8148e-6, 0.053718, 0.02143, -5476e-6, -0.021335, -0.010914, -0.106699, -0.040708, 0.013624, 0.031717, -0.058864, -0.091039, -0.10624, -0.040266, 0.024783, 0.036104, 0.013351, 5674e-6, 0.013377, -0.014192, 0.012503, 6394e-6, -0.02841, -4971e-6, -0.022927, -2823e-6, 0.087578, 0.041583, 7853e-6, -0.083155, 0.025704, 0.033491, 0.011361, -0.04942, -0.044508, 0.0311, -0.046498, -0.027239, 3602e-6, 0.040659, 0.050427, -0.025982, 0.014929, 0.015421, 0.031525, -0.062248, 0.03429, 0.052807, -0.044957, -0.023206, 0.055626, -0.038784, 0.022958, 0.043242, -0.128127, -0.054922, 3364e-6, -0.076564, -0.037719, 0.03462, 0.055063, -0.070653, -0, 0.06233, -0.030029, -0.032604, 0.014582, 0.045522, 0.028487, 0.060517, -2969e-6, -0.114903, 0.015776, -0.035656, 5943e-6, 0.029417, 1415e-6, 0.010575, 6686e-6, 0.033255, -0.076697, -0.018056, 0.07942, 0.059409, -0.03671, -0.127963, 0.026159, 0.014287, -0.024613, -0.05576, -0.032465, -0.023479, -0.030419, 9631e-6, -9214e-6, -0.016757, 0.013094, -0.050212, -0.035049, 0.049743, -0.065495, -0.075293, -9875e-6, 0.129848, 0.020889, -0.079259, -0.026347, -0.02803, 2228e-6, -0.065164, 0.043506, -0.033239, -295e-6, -6674e-6, -0.011676, 0.014787, -0.070129, -0.065786, -0.041317, -3707e-6, -0.025125, -0.027828, -0.086907, 0.07926, 7317e-6, -0.053674, -0.034213, 0.054837, -0.062371, 0.036652, 0.070297, -0.090998, 0.015399, 0.052273, -0.051188, 0.039306, -0.066122, 0.040192, 0.02005, -0.022352, -0.17157, -0.039433, -7233e-6, -0.039524, 15e-4, -0.027335, 0.059864, 0.062908, 0.051305, -0.020745, 0.089525, -0.011786, -0.020093, -0.070926, -0.055612, -0.052107, 0.110824, -385e-5, -0, -0.070805, -0.035939, 0.03615, 0.036301, 0.044026, 2509e-6, -5092e-6, 0.068686, 0.037356, 0.02202, 0.025483, -0.032118, -0.107202, -0.04086, 0.048949, 0.038155, -5906e-6, 0.013435, -0.031491, -0.055225, 0.067576, 0.035719, -0.022875, 0.016182, 0.043324, 0.011605, 0.061764, 0.143727, 0.050779, -0.052731, -0.015323, 0.062416, -0.018611, -0.07632, -0.047169, 0.100932, 0.033838, -0.021418, 0.046654, 0.014842, 0.036839, -0.024439, 0.035967, 0.067279, -5978e-6, 0.097739, -0.058634, 0.020037, 1243e-6, -0.081814, -0.06543, 8175e-6, 5117e-6, 0.080321, 57e-6, 0.063212, 0.053892, -0.021493, 0.052762, 0.018396, 0.067694, 0.088151, -0.031927, -0.019349] },
@@ -5107,7 +5133,6 @@ var init_tool_embeddings_generated = __esm({
         { name: "get_note_structure", category: "read", tier: 1, descriptionHash: "d46b747577458fa3", embedding: [-0.034053, 0.058568, -0.013073, 0.051956, 1878e-6, -3484e-6, -0.021384, 0.029459, 0.01866, -0.048506, 4879e-6, -0.02044, 0.02816, -0.035958, 0.080657, 0.031094, 0.034978, 0.025658, 0.023314, -0.026633, 0.088011, 0.055726, 0.045466, -0.019004, -0.045637, 0.051535, -0.119519, -817e-5, 0.051132, -8649e-6, 0.044961, 0.056027, 0.074836, 0.074553, 475e-5, 0.110606, 1981e-6, -0.035258, 0.012263, -0.027338, -0.030202, 0.040594, -0.03311, 0.025563, 0.016389, -7492e-6, -0.057405, -1909e-6, -0.045447, 0.022976, -0.076963, -0.012285, -0.068218, 0.041681, 0.041577, 0.117179, 0.019101, -0.019711, -0.089762, -0.050572, 0.028838, -0.050339, -0.029523, -0.061273, -0.030107, 0.02912, 0.019308, -5468e-6, 0.049428, -0.14302, 0.095878, 9145e-6, 0.020457, 0.041474, 9214e-6, 4388e-6, -4607e-6, -0.014015, -0.047316, -0.11267, -0.098773, 0.044953, 8675e-6, 0.041169, 0.025942, -0.011891, 0.026525, -0.064685, -6678e-6, 0.061513, 0.096213, -0.123228, -0.065633, -0.019303, 8386e-6, 0.072118, 0.01913, -0.061346, 0.102101, 5084e-6, 0.055616, 0.078131, 0.079695, 0.018583, -0.035607, 0.0278, -0.045358, 0.060122, -0.048107, -0.049176, -0.011027, 0.064188, 0.053857, -0.01995, 6125e-6, -0.108854, -7305e-6, -0.03411, 0.045967, 0.111935, 0.112075, 0.01486, -0.022984, 0.015949, -0.102044, -0.012269, -0.075949, 0, 0.054186, 0.018959, 0.0149, 0.017011, -0.049196, 0.023439, 0.023984, 0.05285, -0.06726, -0.020796, -4855e-6, -7865e-6, -0.024857, 0.043349, -0.02489, -1547e-6, -0.045001, 0.06978, 0.019432, 0.03429, 0.011628, 7296e-6, 0.018451, -0.048771, 0.057362, 0.011788, -0.064353, -0.059757, -0.106931, -8745e-6, -0.036667, -0.079833, 0.024444, -0.047112, 0.016105, 0.06526, -0.040127, -4395e-6, -0.046705, -0.106663, 7097e-6, 3845e-6, 0.063465, -0.057979, -0.069587, 773e-6, -0.11854, 0.03829, 0.025318, 0.012997, 0.071065, 0.019042, -653e-5, 0.015978, 0.011882, 0.021631, 0.056059, 0.037697, -0.025745, 0.029873, 0.069977, -1341e-6, -0.017607, 0.032514, -0.040447, 0.023605, -0.032664, -0.0646, 0.069692, 8649e-6, -7163e-6, 0.047986, -7216e-6, 0.023747, -0.016205, -0.082133, -0.048612, -0.094448, 0.069621, -7387e-6, -0.038751, 0.01059, 0.040886, 0.077897, -0.032101, 0.034213, 0.053679, -0.182541, -0.026943, -0.061374, -0.044323, -0.04285, -0.047162, -0.073464, -8375e-6, -0, 0.045809, -0.051449, 0.014081, -0.057152, -0.024508, 0.044098, -0.031783, -2289e-6, -9969e-6, 0.082517, 0.02157, 0.014477, -0.029174, -0.04392, 0.011175, 0.048167, 9909e-6, -0.051525, 0.047285, 0.080488, -0.050922, -0.01143, -0.040418, 0.062125, 0.028396, -8963e-6, -0.051493, -0.048817, 0.027338, -0.066401, 0.017883, -0.053035, -0.053539, -0.036246, -0.057684, -0.034075, -414e-5, -0.073031, -0.040457, 0.086656, 0.068735, 0.107286, 4776e-6, -4959e-6, -0.047611, -0.028712, -0.024964, 0.089701, -0.045587, -0.043428, 0.053476, -0.030139, 3572e-6, -1346e-6, -0.018707, 0.049658, 5663e-6, 1265e-6, -0.078038, -0.049664, -0.022299, 0.065011, -0.11443, 0.034629, 3051e-6, -0.084661, 0.014807, -0.076934, -0.094602, -0.014275, -0.038493, 7669e-6, 0.05943, -0.032143, 0.065115, 0.079638, -0.061122, -0.014708, -0.043751, -0.029774, -0.015585, -0.015531, 0.043522, 0.07072, 0.040783, -0.031524, 9546e-6, 0.02525, -0.023371, -0.010383, -2826e-6, -0.059428, 9702e-6, 0.06052, 0.040492, -0, -0.11971, -0.057381, -0.063901, -0.019077, -5356e-6, -1707e-6, 0.040946, 0.026112, -0.042693, 5638e-6, 0.034895, -0.043335, -0.135079, -0.044002, -0.016958, 2444e-6, 0.091011, 0.011747, -0.040649, -0.039531, -0.015739, 0.053451, -0.049184, -1028e-6, 0.066912, 0.023815, 1227e-6, 0.099626, 0.038918, 0.016415, 0.082349, 0.038295, -0.012661, 5537e-6, 0.054001, 0.03846, 0.067522, -0.012906, -4587e-6, 0.111114, 0.082928, 0.054718, -0.064304, 0.059634, 0.073812, -0.026092, -0.040453, 0.016418, 0.038886, -0.059243, -0.028257, -0.024486, -0.051302, 7722e-6, -0.095123, 0.021788, 0.070279, 0.054412, 0.042015, -0.062366, 0.102527, 0.025488, 0.072279, 0.017399] },
         { name: "get_section_content", category: "read", tier: 1, descriptionHash: "3143db09c864e123", embedding: [-0.028641, 0.085473, -76e-6, 0.05119, 0.031131, 1587e-6, -0.018978, 0.057946, -0.01217, -0.034409, -567e-6, 8665e-6, 0.021315, -0.022961, 0.091059, -0.030405, 0.046316, 0.042966, 0.021119, -1504e-6, 0.053647, 0.101898, 8477e-6, 0.03071, -0.054229, 0.035659, -0.15261, 0.053486, -4781e-6, -0.043234, 0.043718, -0.012788, 0.018779, 0.011845, 8181e-6, 0.036182, 0.0978, -0.036718, 0.072551, 0.017413, -0.027154, 0.029073, -0.060769, 0.023862, 0.027807, -0.022091, -0.063303, -5347e-6, 7137e-6, -0.021798, -0.034714, -0.023498, -0.02925, 0.092221, 0.010238, 0.109993, 534e-6, -0.025775, -0.050855, 6795e-6, -0.064772, -0.069964, -4102e-6, -0.073128, -0.035828, 0.016207, -0.03324, 0.016634, -0.045777, -0.027336, 0.027186, -0.025611, 0.038306, 0.052737, 9481e-6, -0.025895, -0.050778, -0.043424, -0.049807, -0.119121, -0.084864, 0.066539, -0.016666, 0.049291, -0.018263, 5135e-6, -2983e-6, -0.012152, -0.070296, 0.027834, 0.053321, -0.082358, -0.014167, 0.030441, -0.064228, 0.044649, -144e-5, -0.109388, 0.060139, 0.015573, -8612e-6, 0.030612, 0.060786, -0.01802, -0.067729, -0.013319, -8888e-6, 0.028932, -0.045929, -0.042227, 0.010539, 0.033105, -0.015885, -4513e-6, 116e-6, -0.066676, 0.048411, -0.029626, 0.032187, 0.082548, 0.114786, -0.01838, -8558e-6, 0.065853, -0.074634, -0.039559, 0.031106, 0, 6209e-6, -8677e-6, 3492e-6, 0.05194, -0.032895, 0.03922, -0.031535, -898e-5, -0.025381, -0.014504, 0.013425, -0.047406, -7584e-6, 0.06063, -0.029333, -0.011628, 5507e-6, 0.057618, -0.025885, 0.023597, -0.031007, 2971e-6, 0.012595, -0.060759, 0.050706, 0.052725, -0.065455, 734e-6, -0.113944, -0.011068, -908e-5, -0.03675, 0.037886, -0.118776, 254e-5, 0.051742, 3988e-6, -2943e-6, -0.073215, -0.046089, -0.014969, -6248e-6, 0.06288, -0.03653, -0.076457, 0.040562, -0.053199, 0.046905, -665e-6, -0.03219, 0.052905, 0.018131, 0.047858, -0.034036, 0.052139, -0.031547, 3647e-6, 0.053643, -4297e-6, 7731e-6, 0.124256, 0.012433, -0.04248, 0.029914, -0.059878, 0.025681, -1956e-6, -0.046563, 167e-6, -2874e-6, -0.067715, 0.032702, -0.010757, 0.048113, 729e-6, -0.046407, -0.069157, -0.070698, 0.116455, -0.038527, -454e-5, 0.038641, 0.064124, 8841e-6, 8073e-6, 0.029897, 0.065531, -0.099762, -0.027115, -0.081608, -0.128888, -0.097702, 0.03308, -0.087019, 0.013349, -0, 0.072201, -0.014661, -0.048643, -0.060926, -0.077314, 0.059431, 0.011764, 0.035201, 0.016747, 0.085562, 0.018052, 9969e-6, -0.039091, -0.012121, 0.065632, -906e-5, -0.072452, -0.069153, 0.059193, 0.019054, -0.085421, -0.077256, -0.018214, 0.012881, 0.020715, 7903e-6, -0.055617, -0.029759, 0.015393, -0.088237, -8017e-6, -0.045987, -1644e-6, -8979e-6, -0.075813, -0.031571, -0.061005, -0.027525, -339e-5, 0.060508, 0.110903, 0.101027, 0.077668, -0.034899, -0.072861, 0.028758, 0.028136, 0.095881, -0.049, 0.016251, -0.045377, -0.04172, -4138e-6, 0.031363, -0.016481, 0.051365, -0.02863, 0.038089, -0.095247, -0.068709, -0.017717, 0.067932, -0.094599, 0.061901, 0.042007, -0.020073, 0.031228, -0.09808, -0.041746, -821e-6, -0.024428, -0.04163, 0.071431, -0.059914, 0.06119, 0.112077, -0.08753, 0.020743, -0.103866, 0.039082, -4396e-6, -0.02896, -0.056667, 0.066637, 0.090426, -0.014902, -0.050542, -0.016232, 0.015545, -0.017757, 7608e-6, -0.03554, 0.078521, 0.078539, -0.030191, -0, -0.017856, -0.069979, -0.012196, -0.062197, -0.054607, 0.061452, -0.028817, -0.059814, -0.033044, 0.023097, 5961e-6, -0.069378, -0.095493, -0.084676, -0.036096, 0.047724, 0.036811, 0.060726, -0.012988, -0.051958, -0.059858, 0.063799, -0.010038, -838e-5, 0.046756, 0.077427, -2525e-6, 0.093047, 0.057901, -0.037286, 0.114778, 0.032906, 0.026368, 0.016743, 0.085209, 0.042384, 0.038353, 0.051377, 0.079111, 0.114371, 0.081498, -557e-5, -0.036095, 0.027621, 0.078159, 2603e-6, -0.046535, 0.032286, 0.069105, -0.031222, -0.071619, -0.015424, -0.045878, 0.032742, -0.087811, 0.022644, 0.071666, 0.020854, -0.028094, -0.044219, 0.070801, 0.031554, 0.06052, 0.063509] },
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         { name: "list_entities", category: "graph", tier: 2, descriptionHash: "151c9f9cc7ae7935", embedding: [9869e-6, 0.039221, -0.017985, 0.062127, 0.017846, 0.011479, -0.053497, 0.012181, -0.027631, 0.022112, 0.024476, -0.067664, 0.036259, -6546e-6, 0.060455, 0.083451, 0.04418, 0.055013, 0.05941, -0.150598, 0.090187, 0.018138, -0.029135, -0.021231, -5622e-6, -0.045522, -0.093901, 4966e-6, 0.019375, -0.045165, -0.046949, 0.08159, -0.05141, 0.107208, -0.062976, 0.015833, 0.072251, -0.034373, 7219e-6, -0.034998, 1076e-6, 0.013932, -0.015443, -0.025458, -0.026742, 0.020433, -0.110288, -0.017173, -0.059967, -572e-6, -0.07416, 0.038236, -0.052883, 0.05788, 0.068984, 0.076051, -0.018585, -0.029614, -0.060105, 8377e-6, 1809e-6, -0.016518, -9934e-6, 6265e-6, -0.053017, -9911e-6, 8147e-6, -404e-6, 0.043481, -0.098265, 0.080826, -0.038752, -0.055578, -0.021447, 0.046618, 5738e-6, 0.018936, 0.018056, -6225e-6, -0.09769, -0.11041, 0.089765, 0.041564, -4204e-6, -0.012703, -0.044349, -0.016736, -0.082801, -0.048237, 0.048849, -4514e-6, -0.014904, 0.091902, 0.011808, 0.06668, 0.059157, 0.067194, -0.081303, 0.044341, 0.016443, -0.039689, 0.02914, -0.032206, 0.021104, -0.073646, -0.013962, -0.014455, 0.040568, -0.022705, -8866e-6, -0.011802, 0.118062, -0.016973, -0.045874, 0.011322, -0.048643, -3256e-6, -0.0199, 0.063331, 0.037032, 0.042789, 0.03297, 6748e-6, -0.037267, -0.029454, 0.055477, -0.031838, 0, 0.132252, 0.032721, 0.040518, -0.029734, -0.088739, 0.028325, -0.027406, -8194e-6, -0.035274, 0.026574, -0.10169, 0.132857, -0.01054, 0.085067, 0.072249, -0.018404, 0.029723, 0.124009, 0.050307, -0.044323, 4088e-6, 0.034195, 8592e-6, 0.023349, 0.03524, 0.073328, -0.042406, -0.062921, -0.048544, 0.043889, -9885e-6, -0.046737, 4034e-6, 2817e-6, 0.023997, 0.066605, -0.041633, 0.023126, -0.028927, -0.076544, 0.027614, -0.025601, 0.022261, -0.039308, -0.08337, -102e-6, -0.039863, -0.058725, 0.041901, 0.062422, -261e-5, 155e-5, -0.02527, 0.047808, 0.016203, 0.020861, 0.072298, 7431e-6, -0.025393, 0.050597, 128e-6, -0.018836, -0.014498, 0.010012, -5951e-6, 0.029245, -0.029082, -0.042208, 0.06618, 0.011464, 0.046211, 0.100401, 0.096154, 101e-5, 893e-6, -0.065115, -0.074135, -0.146964, -0.034718, 0.025901, -0.050778, -0.039288, -0.060746, -0.017685, 0.029436, -0.042277, 3545e-6, -0.076755, 4314e-6, -0.032518, -0.07518, -2035e-6, 9925e-6, 121e-5, -0.031225, -0, 0.03046, -0.020084, 0.084786, -0.047479, 396e-6, -0.090925, 0.045119, 1007e-6, -0.090049, 0.087244, 1199e-6, -0.0213, -2816e-6, -0.034068, 0.046173, -0.019643, -0.052543, -0.061895, 4877e-6, 0.098381, -0.0366, -0.036437, -0.091761, 0.115674, 0.077214, -4719e-6, -0.036058, -0.074632, 0.040946, -0.080891, 0.076584, -0.071783, -0.030318, -0.018569, -6304e-6, -0.028519, -0.011312, -0.085765, -0.081931, -0.028463, -0.041507, 0.045099, -0.070759, 0.031346, 2321e-6, -0.014253, -9167e-6, 0.071664, -0.017914, -0.044684, -7361e-6, 0.033823, 0.064097, 0.034082, 0.031671, 9526e-6, -0.046141, 0.071486, -0.06172, -2236e-6, 0.030522, -3738e-6, -0.048973, 0.098027, 495e-5, -0.080678, 2526e-6, -0.049155, -0.064288, -0.01438, 0.01443, -0.017578, 9537e-6, -0.047826, 0.056887, -0.052009, -0.024801, 0.023291, -0.024461, 0.012786, -0.023644, -0.037693, 0.047088, 0.032393, 0.046701, -0.061738, 0.028013, 0.08225, 4238e-6, 0.039802, -0.028564, -0.050046, -0.115669, 0.074233, 0.050805, -0, -0.082516, 0.015736, -5736e-6, -0.033366, -0.028511, 9821e-6, 0.052369, 0.086908, -0.066551, 0.051093, 0.045218, -7851e-6, -0.121843, 4426e-6, 0.103404, -0.028686, 0.068992, 0.028774, 0.033047, 0.072594, -0.096302, -0.014749, -0.046137, -0.042746, -0.016003, -545e-5, -3868e-6, 0.047832, 0.046029, 0.038886, 0.025325, 0.070839, 0.015144, 8753e-6, 0.015014, 0.035623, 5691e-6, 0.010876, 4773e-6, 0.078394, 0.092455, 0.055167, -9887e-6, 0.067516, 0.051329, 0.031391, -0.01022, 0.017734, 0.064036, -0.063985, -0.124364, -0.058518, -0.089096, -0.042014, -0.023448, 0.04869, 0.013319, -0.032993, 0.058465, -0.016633, 0.130929, -0.055697, 7264e-6, -0.018472] },
@@ -5158,28 +5183,207 @@ var init_tool_embeddings_generated = __esm({
   }
 });
 
-// src/core/write/constants.ts
-function estimateTokens(content) {
-  const str = typeof content === "string" ? content : JSON.stringify(content);
-  return Math.ceil(str.length / 4);
-}
-var HEADING_REGEX3;
-var init_constants2 = __esm({
-  "src/core/write/constants.ts"() {
-    "use strict";
-    HEADING_REGEX3 = /^(#{1,6})\s+(.+)$/;
-  }
-});
-
-// src/core/write/writer.ts
+// src/core/write/path-security.ts
 import fs20 from "fs/promises";
 import path22 from "path";
-import matter5 from "gray-matter";
-import { createHash as createHash2 } from "node:crypto";
 function isSensitivePath(filePath) {
   const normalizedPath = filePath.replace(/\\/g, "/");
   return SENSITIVE_PATH_PATTERNS.some((pattern) => pattern.test(normalizedPath));
 }
+function isWithinDirectory(child, parent, allowEqual = false) {
+  const rel = path22.relative(path22.resolve(parent), path22.resolve(child));
+  if (rel === "") return allowEqual;
+  const firstSeg = rel.split(path22.sep)[0];
+  return firstSeg !== ".." && !path22.isAbsolute(rel);
+}
+function validatePath(vaultPath2, notePath) {
+  if (notePath.startsWith("/")) {
+    return false;
+  }
+  if (process.platform === "win32" && /^[a-zA-Z]:/.test(notePath)) {
+    return false;
+  }
+  if (notePath.startsWith("\\")) {
+    return false;
+  }
+  return isWithinDirectory(path22.resolve(vaultPath2, notePath), vaultPath2);
+}
+function sanitizeNotePath(notePath) {
+  const dir = path22.dirname(notePath);
+  let filename = path22.basename(notePath);
+  const ext = filename.endsWith(".md") ? ".md" : "";
+  let stem2 = ext ? filename.slice(0, -ext.length) : filename;
+  stem2 = stem2.replace(/\s+/g, "-");
+  stem2 = stem2.replace(/[?*<>|":]/g, "");
+  stem2 = stem2.toLowerCase();
+  stem2 = stem2.replace(/-{2,}/g, "-");
+  stem2 = stem2.replace(/^-+|-+$/g, "");
+  filename = stem2 + (ext || ".md");
+  return dir === "." ? filename : path22.join(dir, filename).replace(/\\/g, "/");
+}
+async function validatePathSecure(vaultPath2, notePath) {
+  if (notePath.startsWith("/")) {
+    return {
+      valid: false,
+      reason: "Absolute paths not allowed"
+    };
+  }
+  if (process.platform === "win32" && /^[a-zA-Z]:/.test(notePath)) {
+    return {
+      valid: false,
+      reason: "Absolute paths not allowed"
+    };
+  }
+  if (notePath.startsWith("\\")) {
+    return {
+      valid: false,
+      reason: "Absolute paths not allowed"
+    };
+  }
+  const firstSeg = path22.normalize(notePath).split(path22.sep).filter(Boolean)[0];
+  if (firstSeg === "..") {
+    return {
+      valid: false,
+      reason: "Path traversal not allowed"
+    };
+  }
+  if (!isWithinDirectory(path22.resolve(vaultPath2, notePath), vaultPath2)) {
+    return {
+      valid: false,
+      reason: "Path traversal not allowed"
+    };
+  }
+  if (isSensitivePath(notePath)) {
+    return {
+      valid: false,
+      reason: "Cannot write to sensitive file (credentials, keys, secrets)"
+    };
+  }
+  try {
+    const fullPath = path22.join(vaultPath2, notePath);
+    try {
+      await fs20.access(fullPath);
+      const realPath = await fs20.realpath(fullPath);
+      const realVaultPath = await fs20.realpath(vaultPath2);
+      if (!isWithinDirectory(realPath, realVaultPath)) {
+        return {
+          valid: false,
+          reason: "Symlink target is outside vault"
+        };
+      }
+      const relativePath = path22.relative(realVaultPath, realPath);
+      if (isSensitivePath(relativePath)) {
+        return {
+          valid: false,
+          reason: "Symlink target is a sensitive file"
+        };
+      }
+    } catch {
+      const parentDir = path22.dirname(fullPath);
+      try {
+        await fs20.access(parentDir);
+        const realParentPath = await fs20.realpath(parentDir);
+        const realVaultPath = await fs20.realpath(vaultPath2);
+        if (!isWithinDirectory(realParentPath, realVaultPath, true)) {
+          return {
+            valid: false,
+            reason: "Parent directory symlink target is outside vault"
+          };
+        }
+      } catch {
+      }
+    }
+  } catch (error) {
+    return {
+      valid: false,
+      reason: `Path validation error: ${error.message}`
+    };
+  }
+  return { valid: true };
+}
+var SENSITIVE_PATH_PATTERNS;
+var init_path_security = __esm({
+  "src/core/write/path-security.ts"() {
+    "use strict";
+    SENSITIVE_PATH_PATTERNS = [
+      // Environment files (including backups, variations, and Windows ADS)
+      /\.env($|\..*|~|\.swp|\.swo|:)/i,
+      // .env, .env.local, .env~, .env.swp, .env:$DATA (ADS), etc.
+      // Git credentials and config
+      /\.git\/config$/i,
+      // Git config (may contain tokens)
+      /\.git\/credentials$/i,
+      // Git credentials
+      // SSL/TLS certificates and private keys (including backups)
+      /\.pem($|\.bak|\.backup|\.old|\.orig|~)$/i,
+      // SSL/TLS certificates + backups
+      /\.key($|\.bak|\.backup|\.old|\.orig|~)$/i,
+      // Private keys + backups
+      /\.p12($|\.bak|\.backup|\.old|\.orig|~)$/i,
+      // PKCS#12 certificates + backups
+      /\.pfx($|\.bak|\.backup|\.old|\.orig|~)$/i,
+      // Windows certificate format + backups
+      /\.jks($|\.bak|\.backup|\.old|\.orig|~)$/i,
+      // Java keystore + backups
+      /\.crt($|\.bak|\.backup|\.old|\.orig|~)$/i,
+      // Certificate files + backups
+      // SSH keys
+      /id_rsa/i,
+      // SSH private key
+      /id_ed25519/i,
+      // SSH private key (ed25519)
+      /id_ecdsa/i,
+      // SSH private key (ecdsa)
+      /id_dsa/i,
+      // SSH private key (dsa)
+      /\.ssh\/config$/i,
+      // SSH config
+      /authorized_keys$/i,
+      // SSH authorized keys
+      /known_hosts$/i,
+      // SSH known hosts
+      // Generic credentials/secrets files (including backups)
+      /credentials\.json($|\.bak|\.backup|\.old|\.orig|~)$/i,
+      // Cloud credentials + backups
+      /secrets\.json($|\.bak|\.backup|\.old|\.orig|~)$/i,
+      // Secrets files + backups
+      /secrets\.ya?ml($|\.bak|\.backup|\.old|\.orig|~)$/i,
+      // Secrets YAML + backups
+      // Package manager auth
+      /\.npmrc$/i,
+      // npm config (may contain tokens)
+      /\.netrc$/i,
+      // Netrc (HTTP auth credentials)
+      /\.yarnrc$/i,
+      // Yarn config
+      // Cloud provider credentials
+      /\.aws\/credentials$/i,
+      // AWS credentials
+      /\.aws\/config$/i,
+      // AWS config
+      /gcloud\/credentials\.json/i,
+      // Google Cloud credentials
+      /\.azure\/credentials$/i,
+      // Azure credentials
+      /\.docker\/config\.json$/i,
+      // Docker registry auth
+      /\.kube\/config$/i,
+      // Kubernetes config
+      // System password files
+      /\.htpasswd$/i,
+      // Apache password file
+      /shadow$/,
+      // Unix shadow password file
+      /passwd$/,
+      // Unix password file
+      // Hidden credential files (starting with dot)
+      /^\.(credentials|secrets|tokens)$/i
+      // .credentials, .secrets, .tokens
+    ];
+  }
+});
+
+// src/core/write/regex-safety.ts
 function checkRegexSafety(pattern) {
   if (pattern.length > MAX_REGEX_LENGTH) {
     return `Regex pattern too long (${pattern.length} chars, max ${MAX_REGEX_LENGTH})`;
@@ -5216,21 +5420,62 @@ function safeRegexReplace(input, pattern, replacement, useRegex, global = false)
   const regex = createSafeRegex(pattern, global ? "g" : void 0);
   return input.replace(regex, replacement);
 }
-function detectLineEnding(content) {
-  const crlfCount = (content.match(/\r\n/g) || []).length;
-  const lfCount = (content.match(/(?<!\r)\n/g) || []).length;
-  return crlfCount > lfCount ? "CRLF" : "LF";
-}
-function normalizeLineEndings(content) {
-  return content.replace(/\r\n/g, "\n");
-}
-function convertLineEndings(content, style) {
-  const normalized = content.replace(/\r\n/g, "\n");
+var REDOS_PATTERNS, MAX_REGEX_LENGTH;
+var init_regex_safety = __esm({
+  "src/core/write/regex-safety.ts"() {
+    "use strict";
+    REDOS_PATTERNS = [
+      // Nested quantifiers: (a+)+, (a*)+, (a+)*, (a*)*, etc.
+      /(\([^)]*[+*][^)]*\))[+*]/,
+      // Quantifiers followed by optional same-type quantifiers
+      /[+*]\??\s*[+*]/,
+      // Overlapping character classes with quantifiers followed by similar
+      /\[[^\]]*\][+*].*\[[^\]]*\][+*]/,
+      // Multiple adjacent capturing groups with quantifiers
+      /(\([^)]+[+*]\)){2,}/,
+      // Extremely long alternation groups
+      /\([^)]{100,}\)/
+    ];
+    MAX_REGEX_LENGTH = 500;
+  }
+});
+
+// src/core/write/line-endings.ts
+function detectLineEnding(content) {
+  const crlfCount = (content.match(/\r\n/g) || []).length;
+  const lfCount = (content.match(/(?<!\r)\n/g) || []).length;
+  return crlfCount > lfCount ? "CRLF" : "LF";
+}
+function normalizeLineEndings(content) {
+  return content.replace(/\r\n/g, "\n");
+}
+function convertLineEndings(content, style) {
+  const normalized = content.replace(/\r\n/g, "\n");
   return style === "CRLF" ? normalized.replace(/\n/g, "\r\n") : normalized;
 }
 function normalizeTrailingNewline(content) {
   return content.replace(/[\r\n\s]+$/, "") + "\n";
 }
+var init_line_endings = __esm({
+  "src/core/write/line-endings.ts"() {
+    "use strict";
+  }
+});
+
+// src/core/write/constants.ts
+function estimateTokens(content) {
+  const str = typeof content === "string" ? content : JSON.stringify(content);
+  return Math.ceil(str.length / 4);
+}
+var HEADING_REGEX3;
+var init_constants2 = __esm({
+  "src/core/write/constants.ts"() {
+    "use strict";
+    HEADING_REGEX3 = /^(#{1,6})\s+(.+)$/;
+  }
+});
+
+// src/core/write/markdown-structure.ts
 function isEmptyPlaceholder(line) {
   const trimmed = line.trim();
   return EMPTY_PLACEHOLDER_PATTERNS.some((p) => p.test(trimmed));
@@ -5536,189 +5781,27 @@ function insertInSection(content, section, newContent, position, options) {
   }
   return lines.join("\n");
 }
-function validatePath(vaultPath2, notePath) {
-  if (notePath.startsWith("/")) {
-    return false;
-  }
-  if (process.platform === "win32" && /^[a-zA-Z]:/.test(notePath)) {
-    return false;
-  }
-  if (notePath.startsWith("\\")) {
-    return false;
-  }
-  const resolvedVault = path22.resolve(vaultPath2);
-  const resolvedNote = path22.resolve(vaultPath2, notePath);
-  return resolvedNote.startsWith(resolvedVault);
-}
-function sanitizeNotePath(notePath) {
-  const dir = path22.dirname(notePath);
-  let filename = path22.basename(notePath);
-  const ext = filename.endsWith(".md") ? ".md" : "";
-  let stem2 = ext ? filename.slice(0, -ext.length) : filename;
-  stem2 = stem2.replace(/\s+/g, "-");
-  stem2 = stem2.replace(/[?*<>|":]/g, "");
-  stem2 = stem2.toLowerCase();
-  stem2 = stem2.replace(/-{2,}/g, "-");
-  stem2 = stem2.replace(/^-+|-+$/g, "");
-  filename = stem2 + (ext || ".md");
-  return dir === "." ? filename : path22.join(dir, filename).replace(/\\/g, "/");
-}
-async function validatePathSecure(vaultPath2, notePath) {
-  if (notePath.startsWith("/")) {
-    return {
-      valid: false,
-      reason: "Absolute paths not allowed"
-    };
-  }
-  if (process.platform === "win32" && /^[a-zA-Z]:/.test(notePath)) {
-    return {
-      valid: false,
-      reason: "Absolute paths not allowed"
-    };
-  }
-  if (notePath.startsWith("\\")) {
-    return {
-      valid: false,
-      reason: "Absolute paths not allowed"
-    };
-  }
-  if (notePath.startsWith("..")) {
-    return {
-      valid: false,
-      reason: "Path traversal not allowed"
-    };
-  }
-  const resolvedVault = path22.resolve(vaultPath2);
-  const resolvedNote = path22.resolve(vaultPath2, notePath);
-  if (!resolvedNote.startsWith(resolvedVault)) {
-    return {
-      valid: false,
-      reason: "Path traversal not allowed"
-    };
-  }
-  if (isSensitivePath(notePath)) {
-    return {
-      valid: false,
-      reason: "Cannot write to sensitive file (credentials, keys, secrets)"
-    };
-  }
-  try {
-    const fullPath = path22.join(vaultPath2, notePath);
-    try {
-      await fs20.access(fullPath);
-      const realPath = await fs20.realpath(fullPath);
-      const realVaultPath = await fs20.realpath(vaultPath2);
-      if (!realPath.startsWith(realVaultPath)) {
-        return {
-          valid: false,
-          reason: "Symlink target is outside vault"
-        };
-      }
-      const relativePath = path22.relative(realVaultPath, realPath);
-      if (isSensitivePath(relativePath)) {
-        return {
-          valid: false,
-          reason: "Symlink target is a sensitive file"
-        };
-      }
-    } catch {
-      const parentDir = path22.dirname(fullPath);
-      try {
-        await fs20.access(parentDir);
-        const realParentPath = await fs20.realpath(parentDir);
-        const realVaultPath = await fs20.realpath(vaultPath2);
-        if (!realParentPath.startsWith(realVaultPath)) {
-          return {
-            valid: false,
-            reason: "Parent directory symlink target is outside vault"
-          };
-        }
-      } catch {
-      }
-    }
-  } catch (error) {
-    return {
-      valid: false,
-      reason: `Path validation error: ${error.message}`
-    };
-  }
-  return { valid: true };
-}
-function computeContentHash(rawContent) {
-  return createHash2("sha256").update(rawContent).digest("hex").slice(0, 16);
-}
-async function readVaultFile(vaultPath2, notePath) {
-  if (!validatePath(vaultPath2, notePath)) {
-    throw new Error("Invalid path: path traversal not allowed");
-  }
-  const fullPath = path22.join(vaultPath2, notePath);
-  const [rawContent, stat5] = await Promise.all([
-    fs20.readFile(fullPath, "utf-8"),
-    fs20.stat(fullPath)
-  ]);
-  const contentHash2 = computeContentHash(rawContent);
-  const lineEnding = detectLineEnding(rawContent);
-  const normalizedContent = normalizeLineEndings(rawContent);
-  const parsed = matter5(normalizedContent);
-  const frontmatter = deepCloneFrontmatter(parsed.data);
-  return {
-    content: parsed.content,
-    frontmatter,
-    rawContent,
-    lineEnding,
-    mtimeMs: stat5.mtimeMs,
-    contentHash: contentHash2
-  };
-}
-function deepCloneFrontmatter(obj) {
-  if (obj === null || typeof obj !== "object") {
-    return obj;
-  }
-  if (obj instanceof Date) {
-    return new Date(obj.getTime());
-  }
-  if (Array.isArray(obj)) {
-    return obj.map((item) => {
-      if (item instanceof Date) {
-        return new Date(item.getTime());
-      }
-      if (item !== null && typeof item === "object") {
-        return deepCloneFrontmatter(item);
-      }
-      return item;
-    });
-  }
-  const cloned = {};
-  for (const key of Object.keys(obj)) {
-    const value = obj[key];
-    if (value instanceof Date) {
-      cloned[key] = new Date(value.getTime());
-    } else if (value !== null && typeof value === "object") {
-      cloned[key] = deepCloneFrontmatter(value);
-    } else {
-      cloned[key] = value;
-    }
-  }
-  return cloned;
-}
-async function writeVaultFile(vaultPath2, notePath, content, frontmatter, lineEnding = "LF", expectedHash) {
-  const validation = await validatePathSecure(vaultPath2, notePath);
-  if (!validation.valid) {
-    throw new Error(`Invalid path: ${validation.reason}`);
-  }
-  const fullPath = path22.join(vaultPath2, notePath);
-  if (expectedHash) {
-    const currentRaw = await fs20.readFile(fullPath, "utf-8");
-    const currentHash = computeContentHash(currentRaw);
-    if (currentHash !== expectedHash) {
-      throw new WriteConflictError(notePath);
-    }
+var EMPTY_PLACEHOLDER_PATTERNS;
+var init_markdown_structure = __esm({
+  "src/core/write/markdown-structure.ts"() {
+    "use strict";
+    init_constants2();
+    EMPTY_PLACEHOLDER_PATTERNS = [
+      /^\d+\.\s*$/,
+      // "1. " or "2. " (numbered list placeholder)
+      /^-\s*$/,
+      // "- " (bullet placeholder)
+      /^-\s*\[\s*\]\s*$/,
+      // "- [ ] " (empty task placeholder)
+      /^-\s*\[x\]\s*$/i,
+      // "- [x] " (completed task placeholder)
+      /^\*\s*$/
+      // "* " (asterisk bullet placeholder)
+    ];
   }
-  let output = matter5.stringify(content, frontmatter);
-  output = normalizeTrailingNewline(output);
-  output = convertLineEndings(output, lineEnding);
-  await fs20.writeFile(fullPath, output, "utf-8");
-}
+});
+
+// src/core/write/content-mutation.ts
 function removeFromSection(content, section, pattern, mode = "first", useRegex = false) {
   const lines = content.split("\n");
   const removedLines = [];
@@ -5954,114 +6037,112 @@ function injectMutationMetadata(frontmatter, scoping) {
       frontmatter._last_modified_by = `session:${scoping.session_id}`;
     }
   }
-  return frontmatter;
+  return frontmatter;
+}
+var DiagnosticError;
+var init_content_mutation = __esm({
+  "src/core/write/content-mutation.ts"() {
+    "use strict";
+    init_regex_safety();
+    init_levenshtein();
+    DiagnosticError = class extends Error {
+      diagnostic;
+      constructor(message, diagnostic) {
+        super(message);
+        this.name = "DiagnosticError";
+        this.diagnostic = diagnostic;
+      }
+    };
+  }
+});
+
+// src/core/write/file-io.ts
+import fs21 from "fs/promises";
+import path23 from "path";
+import matter5 from "gray-matter";
+import { createHash as createHash2 } from "node:crypto";
+function computeContentHash(rawContent) {
+  return createHash2("sha256").update(rawContent).digest("hex").slice(0, 16);
+}
+async function readVaultFile(vaultPath2, notePath) {
+  const validation = await validatePathSecure(vaultPath2, notePath);
+  if (!validation.valid) {
+    throw new Error(`Invalid path: ${validation.reason}`);
+  }
+  const fullPath = path23.join(vaultPath2, notePath);
+  const [rawContent, stat4] = await Promise.all([
+    fs21.readFile(fullPath, "utf-8"),
+    fs21.stat(fullPath)
+  ]);
+  const contentHash2 = computeContentHash(rawContent);
+  const lineEnding = detectLineEnding(rawContent);
+  const normalizedContent = normalizeLineEndings(rawContent);
+  const parsed = matter5(normalizedContent);
+  const frontmatter = deepCloneFrontmatter(parsed.data);
+  return {
+    content: parsed.content,
+    frontmatter,
+    rawContent,
+    lineEnding,
+    mtimeMs: stat4.mtimeMs,
+    contentHash: contentHash2
+  };
+}
+function deepCloneFrontmatter(obj) {
+  if (obj === null || typeof obj !== "object") {
+    return obj;
+  }
+  if (obj instanceof Date) {
+    return new Date(obj.getTime());
+  }
+  if (Array.isArray(obj)) {
+    return obj.map((item) => {
+      if (item instanceof Date) {
+        return new Date(item.getTime());
+      }
+      if (item !== null && typeof item === "object") {
+        return deepCloneFrontmatter(item);
+      }
+      return item;
+    });
+  }
+  const cloned = {};
+  for (const key of Object.keys(obj)) {
+    const value = obj[key];
+    if (value instanceof Date) {
+      cloned[key] = new Date(value.getTime());
+    } else if (value !== null && typeof value === "object") {
+      cloned[key] = deepCloneFrontmatter(value);
+    } else {
+      cloned[key] = value;
+    }
+  }
+  return cloned;
 }
-var SENSITIVE_PATH_PATTERNS, REDOS_PATTERNS, MAX_REGEX_LENGTH, EMPTY_PLACEHOLDER_PATTERNS, WriteConflictError, DiagnosticError;
-var init_writer = __esm({
-  "src/core/write/writer.ts"() {
+async function writeVaultFile(vaultPath2, notePath, content, frontmatter, lineEnding = "LF", expectedHash) {
+  const validation = await validatePathSecure(vaultPath2, notePath);
+  if (!validation.valid) {
+    throw new Error(`Invalid path: ${validation.reason}`);
+  }
+  const fullPath = path23.join(vaultPath2, notePath);
+  if (expectedHash) {
+    const currentRaw = await fs21.readFile(fullPath, "utf-8");
+    const currentHash = computeContentHash(currentRaw);
+    if (currentHash !== expectedHash) {
+      throw new WriteConflictError(notePath);
+    }
+  }
+  let output = matter5.stringify(content, frontmatter);
+  output = normalizeTrailingNewline(output);
+  output = convertLineEndings(output, lineEnding);
+  await fs21.writeFile(fullPath, output, "utf-8");
+}
+var WriteConflictError;
+var init_file_io = __esm({
+  "src/core/write/file-io.ts"() {
     "use strict";
-    init_constants2();
-    init_levenshtein();
-    SENSITIVE_PATH_PATTERNS = [
-      // Environment files (including backups, variations, and Windows ADS)
-      /\.env($|\..*|~|\.swp|\.swo|:)/i,
-      // .env, .env.local, .env~, .env.swp, .env:$DATA (ADS), etc.
-      // Git credentials and config
-      /\.git\/config$/i,
-      // Git config (may contain tokens)
-      /\.git\/credentials$/i,
-      // Git credentials
-      // SSL/TLS certificates and private keys (including backups)
-      /\.pem($|\.bak|\.backup|\.old|\.orig|~)$/i,
-      // SSL/TLS certificates + backups
-      /\.key($|\.bak|\.backup|\.old|\.orig|~)$/i,
-      // Private keys + backups
-      /\.p12($|\.bak|\.backup|\.old|\.orig|~)$/i,
-      // PKCS#12 certificates + backups
-      /\.pfx($|\.bak|\.backup|\.old|\.orig|~)$/i,
-      // Windows certificate format + backups
-      /\.jks($|\.bak|\.backup|\.old|\.orig|~)$/i,
-      // Java keystore + backups
-      /\.crt($|\.bak|\.backup|\.old|\.orig|~)$/i,
-      // Certificate files + backups
-      // SSH keys
-      /id_rsa/i,
-      // SSH private key
-      /id_ed25519/i,
-      // SSH private key (ed25519)
-      /id_ecdsa/i,
-      // SSH private key (ecdsa)
-      /id_dsa/i,
-      // SSH private key (dsa)
-      /\.ssh\/config$/i,
-      // SSH config
-      /authorized_keys$/i,
-      // SSH authorized keys
-      /known_hosts$/i,
-      // SSH known hosts
-      // Generic credentials/secrets files (including backups)
-      /credentials\.json($|\.bak|\.backup|\.old|\.orig|~)$/i,
-      // Cloud credentials + backups
-      /secrets\.json($|\.bak|\.backup|\.old|\.orig|~)$/i,
-      // Secrets files + backups
-      /secrets\.ya?ml($|\.bak|\.backup|\.old|\.orig|~)$/i,
-      // Secrets YAML + backups
-      // Package manager auth
-      /\.npmrc$/i,
-      // npm config (may contain tokens)
-      /\.netrc$/i,
-      // Netrc (HTTP auth credentials)
-      /\.yarnrc$/i,
-      // Yarn config
-      // Cloud provider credentials
-      /\.aws\/credentials$/i,
-      // AWS credentials
-      /\.aws\/config$/i,
-      // AWS config
-      /gcloud\/credentials\.json/i,
-      // Google Cloud credentials
-      /\.azure\/credentials$/i,
-      // Azure credentials
-      /\.docker\/config\.json$/i,
-      // Docker registry auth
-      /\.kube\/config$/i,
-      // Kubernetes config
-      // System password files
-      /\.htpasswd$/i,
-      // Apache password file
-      /shadow$/,
-      // Unix shadow password file
-      /passwd$/,
-      // Unix password file
-      // Hidden credential files (starting with dot)
-      /^\.(credentials|secrets|tokens)$/i
-      // .credentials, .secrets, .tokens
-    ];
-    REDOS_PATTERNS = [
-      // Nested quantifiers: (a+)+, (a*)+, (a+)*, (a*)*, etc.
-      /(\([^)]*[+*][^)]*\))[+*]/,
-      // Quantifiers followed by optional same-type quantifiers
-      /[+*]\??\s*[+*]/,
-      // Overlapping character classes with quantifiers followed by similar
-      /\[[^\]]*\][+*].*\[[^\]]*\][+*]/,
-      // Multiple adjacent capturing groups with quantifiers
-      /(\([^)]+[+*]\)){2,}/,
-      // Extremely long alternation groups
-      /\([^)]{100,}\)/
-    ];
-    MAX_REGEX_LENGTH = 500;
-    EMPTY_PLACEHOLDER_PATTERNS = [
-      /^\d+\.\s*$/,
-      // "1. " or "2. " (numbered list placeholder)
-      /^-\s*$/,
-      // "- " (bullet placeholder)
-      /^-\s*\[\s*\]\s*$/,
-      // "- [ ] " (empty task placeholder)
-      /^-\s*\[x\]\s*$/i,
-      // "- [x] " (completed task placeholder)
-      /^\*\s*$/
-      // "* " (asterisk bullet placeholder)
-    ];
+    init_path_security();
+    init_line_endings();
     WriteConflictError = class extends Error {
       constructor(notePath) {
         super(`Write conflict on ${notePath}: file was modified externally since it was read. Re-read and retry.`);
@@ -6069,14 +6150,19 @@ var init_writer = __esm({
         this.name = "WriteConflictError";
       }
     };
-    DiagnosticError = class extends Error {
-      diagnostic;
-      constructor(message, diagnostic) {
-        super(message);
-        this.name = "DiagnosticError";
-        this.diagnostic = diagnostic;
-      }
-    };
+  }
+});
+
+// src/core/write/writer.ts
+var init_writer = __esm({
+  "src/core/write/writer.ts"() {
+    "use strict";
+    init_path_security();
+    init_regex_safety();
+    init_line_endings();
+    init_markdown_structure();
+    init_content_mutation();
+    init_file_io();
   }
 });
 
@@ -6106,8 +6192,8 @@ function createContext(variables = {}) {
     steps: {}
   };
 }
-function resolvePath(obj, path39) {
-  const parts = path39.split(".");
+function resolvePath(obj, path40) {
+  const parts = path40.split(".");
   let current = obj;
   for (const part of parts) {
     if (current === void 0 || current === null) {
@@ -6564,8 +6650,8 @@ __export(conditions_exports, {
   evaluateCondition: () => evaluateCondition,
   shouldStepExecute: () => shouldStepExecute
 });
-import fs28 from "fs/promises";
-import path30 from "path";
+import fs29 from "fs/promises";
+import path31 from "path";
 async function evaluateCondition(condition, vaultPath2, context) {
   const interpolatedPath = condition.path ? interpolate(condition.path, context) : void 0;
   const interpolatedSection = condition.section ? interpolate(condition.section, context) : void 0;
@@ -6618,9 +6704,9 @@ async function evaluateCondition(condition, vaultPath2, context) {
   }
 }
 async function evaluateFileExists(vaultPath2, notePath, expectExists) {
-  const fullPath = path30.join(vaultPath2, notePath);
+  const fullPath = path31.join(vaultPath2, notePath);
   try {
-    await fs28.access(fullPath);
+    await fs29.access(fullPath);
     return {
       met: expectExists,
       reason: expectExists ? `File exists: ${notePath}` : `File exists (expected not to): ${notePath}`
@@ -6633,9 +6719,9 @@ async function evaluateFileExists(vaultPath2, notePath, expectExists) {
   }
 }
 async function evaluateSectionExists(vaultPath2, notePath, sectionName, expectExists) {
-  const fullPath = path30.join(vaultPath2, notePath);
+  const fullPath = path31.join(vaultPath2, notePath);
   try {
-    await fs28.access(fullPath);
+    await fs29.access(fullPath);
   } catch {
     return {
       met: !expectExists,
@@ -6664,9 +6750,9 @@ async function evaluateSectionExists(vaultPath2, notePath, sectionName, expectEx
   }
 }
 async function evaluateFrontmatterExists(vaultPath2, notePath, fieldName, expectExists) {
-  const fullPath = path30.join(vaultPath2, notePath);
+  const fullPath = path31.join(vaultPath2, notePath);
   try {
-    await fs28.access(fullPath);
+    await fs29.access(fullPath);
   } catch {
     return {
       met: !expectExists,
@@ -6695,9 +6781,9 @@ async function evaluateFrontmatterExists(vaultPath2, notePath, fieldName, expect
   }
 }
 async function evaluateFrontmatterEquals(vaultPath2, notePath, fieldName, expectedValue) {
-  const fullPath = path30.join(vaultPath2, notePath);
+  const fullPath = path31.join(vaultPath2, notePath);
   try {
-    await fs28.access(fullPath);
+    await fs29.access(fullPath);
   } catch {
     return {
       met: false,
@@ -6839,9 +6925,9 @@ var init_taskHelpers = __esm({
 });
 
 // src/index.ts
-import * as path38 from "path";
+import * as path39 from "path";
 import { readFileSync as readFileSync6, realpathSync, existsSync as existsSync3 } from "fs";
-import { fileURLToPath as fileURLToPath2 } from "url";
+import { fileURLToPath as fileURLToPath3 } from "url";
 import { dirname as dirname7, join as join20 } from "path";
 import { McpServer } from "@modelcontextprotocol/sdk/server/mcp.js";
 import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js";
@@ -7079,8 +7165,8 @@ function updateIndexProgress(parsed, total) {
 function normalizeTarget(target) {
   return target.toLowerCase().replace(/\.md$/, "");
 }
-function normalizeNotePath(path39) {
-  return path39.toLowerCase().replace(/\.md$/, "");
+function normalizeNotePath(path40) {
+  return path40.toLowerCase().replace(/\.md$/, "");
 }
 async function buildVaultIndex(vaultPath2, options = {}) {
   const { timeoutMs = DEFAULT_TIMEOUT_MS, onProgress } = options;
@@ -7128,6 +7214,7 @@ async function buildVaultIndexInternal(vaultPath2, startTime, onProgress) {
       console.error(`Parsed ${parsedCount}/${files.length} files (${elapsed}s)`);
       onProgress?.(parsedCount, files.length);
     }
+    await new Promise((resolve3) => setImmediate(resolve3));
   }
   if (parseErrors.length > 0) {
     const msg = `Failed to parse ${parseErrors.length} file(s):`;
@@ -7253,7 +7340,7 @@ function findSimilarEntity(index, target) {
   }
   const maxDist = normalizedLen <= 10 ? 1 : 2;
   let bestMatch;
-  for (const [entity, path39] of index.entities) {
+  for (const [entity, path40] of index.entities) {
     const lenDiff = Math.abs(entity.length - normalizedLen);
     if (lenDiff > maxDist) {
       continue;
@@ -7261,7 +7348,7 @@ function findSimilarEntity(index, target) {
     const dist = levenshteinDistance(normalized, entity);
     if (dist > 0 && dist <= maxDist) {
       if (!bestMatch || dist < bestMatch.distance) {
-        bestMatch = { path: path39, entity, distance: dist };
+        bestMatch = { path: path40, entity, distance: dist };
         if (dist === 1) {
           return bestMatch;
         }
@@ -7685,8 +7772,8 @@ function normalizePath(filePath) {
 function getRelativePath(vaultPath2, filePath) {
   const normalizedVault = normalizePath(vaultPath2);
   const normalizedFile = normalizePath(filePath);
-  const relative3 = path5.posix.relative(normalizedVault, normalizedFile);
-  return relative3;
+  const relative2 = path5.posix.relative(normalizedVault, normalizedFile);
+  return relative2;
 }
 function shouldWatch(filePath, vaultPath2) {
   const normalized = normalizePath(filePath);
@@ -7820,30 +7907,30 @@ var EventQueue = class {
    * Add a new event to the queue
    */
   push(type, rawPath) {
-    const path39 = normalizePath(rawPath);
+    const path40 = normalizePath(rawPath);
     const now = Date.now();
     const event = {
       type,
-      path: path39,
+      path: path40,
       timestamp: now
     };
-    let pending = this.pending.get(path39);
+    let pending = this.pending.get(path40);
     if (!pending) {
       pending = {
         events: [],
         timer: null,
         lastEvent: now
       };
-      this.pending.set(path39, pending);
+      this.pending.set(path40, pending);
     }
     pending.events.push(event);
     pending.lastEvent = now;
-    console.error(`[flywheel] QUEUE: pushed ${type} for ${path39}, pending=${this.pending.size}`);
+    console.error(`[flywheel] QUEUE: pushed ${type} for ${path40}, pending=${this.pending.size}`);
     if (pending.timer) {
       clearTimeout(pending.timer);
     }
     pending.timer = setTimeout(() => {
-      this.flushPath(path39);
+      this.flushPath(path40);
     }, this.config.debounceMs);
     if (this.pending.size >= this.config.batchSize) {
       this.flush();
@@ -7864,10 +7951,10 @@ var EventQueue = class {
   /**
    * Flush a single path's events
    */
-  flushPath(path39) {
-    const pending = this.pending.get(path39);
+  flushPath(path40) {
+    const pending = this.pending.get(path40);
     if (!pending || pending.events.length === 0) return;
-    console.error(`[flywheel] QUEUE: flushing ${path39}, events=${pending.events.length}`);
+    console.error(`[flywheel] QUEUE: flushing ${path40}, events=${pending.events.length}`);
     if (pending.timer) {
       clearTimeout(pending.timer);
       pending.timer = null;
@@ -7876,7 +7963,7 @@ var EventQueue = class {
     if (coalescedType) {
       const coalesced = {
         type: coalescedType,
-        path: path39,
+        path: path40,
         originalEvents: [...pending.events]
       };
       this.onBatch({
@@ -7885,7 +7972,7 @@ var EventQueue = class {
         timestamp: Date.now()
       });
     }
-    this.pending.delete(path39);
+    this.pending.delete(path40);
   }
   /**
    * Flush all pending events
@@ -7897,7 +7984,7 @@ var EventQueue = class {
     }
     if (this.pending.size === 0) return;
     const events = [];
-    for (const [path39, pending] of this.pending) {
+    for (const [path40, pending] of this.pending) {
       if (pending.timer) {
         clearTimeout(pending.timer);
       }
@@ -7905,7 +7992,7 @@ var EventQueue = class {
       if (coalescedType) {
         events.push({
           type: coalescedType,
-          path: path39,
+          path: path40,
           originalEvents: [...pending.events]
         });
       }
@@ -8099,8 +8186,8 @@ async function upsertNote(index, vaultPath2, notePath) {
       releasedKeys = removeNoteFromIndex(index, notePath);
     }
     const fullPath = path7.join(vaultPath2, notePath);
-    const fs35 = await import("fs/promises");
-    const stats = await fs35.stat(fullPath);
+    const fs36 = await import("fs/promises");
+    const stats = await fs36.stat(fullPath);
     const vaultFile = {
       path: notePath,
       absolutePath: fullPath,
@@ -8205,7 +8292,7 @@ async function processBatch(index, vaultPath2, batch, options = {}) {
     }
     onProgress?.(processed, total);
     if (processed % YIELD_INTERVAL === 0 && processed < total) {
-      await new Promise((resolve2) => setImmediate(resolve2));
+      await new Promise((resolve3) => setImmediate(resolve3));
     }
   }
   const durationMs = Date.now() - startTime;
@@ -8297,31 +8384,31 @@ function createVaultWatcher(options) {
         usePolling: config2.usePolling,
         interval: config2.usePolling ? config2.pollInterval : void 0
       });
-      watcher.on("add", (path39) => {
-        console.error(`[flywheel] RAW EVENT: add ${path39}`);
-        if (shouldWatch(path39, vaultPath2)) {
-          console.error(`[flywheel] ACCEPTED: add ${path39}`);
-          eventQueue.push("add", path39);
+      watcher.on("add", (path40) => {
+        console.error(`[flywheel] RAW EVENT: add ${path40}`);
+        if (shouldWatch(path40, vaultPath2)) {
+          console.error(`[flywheel] ACCEPTED: add ${path40}`);
+          eventQueue.push("add", path40);
         } else {
-          console.error(`[flywheel] FILTERED: add ${path39}`);
+          console.error(`[flywheel] FILTERED: add ${path40}`);
         }
       });
-      watcher.on("change", (path39) => {
-        console.error(`[flywheel] RAW EVENT: change ${path39}`);
-        if (shouldWatch(path39, vaultPath2)) {
-          console.error(`[flywheel] ACCEPTED: change ${path39}`);
-          eventQueue.push("change", path39);
+      watcher.on("change", (path40) => {
+        console.error(`[flywheel] RAW EVENT: change ${path40}`);
+        if (shouldWatch(path40, vaultPath2)) {
+          console.error(`[flywheel] ACCEPTED: change ${path40}`);
+          eventQueue.push("change", path40);
         } else {
-          console.error(`[flywheel] FILTERED: change ${path39}`);
+          console.error(`[flywheel] FILTERED: change ${path40}`);
         }
       });
-      watcher.on("unlink", (path39) => {
-        console.error(`[flywheel] RAW EVENT: unlink ${path39}`);
-        if (shouldWatch(path39, vaultPath2)) {
-          console.error(`[flywheel] ACCEPTED: unlink ${path39}`);
-          eventQueue.push("unlink", path39);
+      watcher.on("unlink", (path40) => {
+        console.error(`[flywheel] RAW EVENT: unlink ${path40}`);
+        if (shouldWatch(path40, vaultPath2)) {
+          console.error(`[flywheel] ACCEPTED: unlink ${path40}`);
+          eventQueue.push("unlink", path40);
         } else {
-          console.error(`[flywheel] FILTERED: unlink ${path39}`);
+          console.error(`[flywheel] FILTERED: unlink ${path40}`);
         }
       });
       watcher.on("ready", () => {
@@ -11987,8 +12074,8 @@ function getNoteAccessFrequency(stateDb2, daysBack = 30) {
       }
     }
   }
-  return Array.from(noteMap.entries()).map(([path39, stats]) => ({
-    path: path39,
+  return Array.from(noteMap.entries()).map(([path40, stats]) => ({
+    path: path40,
     access_count: stats.access_count,
     last_accessed: stats.last_accessed,
     tools_used: Array.from(stats.tools)
@@ -12103,7 +12190,7 @@ init_recency();
 init_prospects();
 init_cooccurrence();
 init_retrievalCooccurrence();
-import * as fs34 from "node:fs/promises";
+import * as fs35 from "node:fs/promises";
 import { createHash as createHash4 } from "node:crypto";
 
 // src/vault-registry.ts
@@ -12334,7 +12421,6 @@ var TOOL_CATEGORY = {
   get_common_neighbors: "graph",
   get_backlinks: "graph",
   get_forward_links: "graph",
-  get_weighted_links: "graph",
   get_strong_connections: "graph",
   // schema (7 tools) -- schema intelligence + migrations
   vault_schema: "schema",
@@ -12422,7 +12508,6 @@ var TOOL_TIER = {
   get_common_neighbors: 2,
   get_backlinks: 2,
   get_forward_links: 2,
-  get_weighted_links: 2,
   get_strong_connections: 2,
   suggest_wikilinks: 2,
   validate_links: 2,
@@ -12677,10 +12762,10 @@ Use "flywheel_config" to inspect runtime configuration and set "tool_tier_overri
 }
 
 // src/tool-registry.ts
-import * as path37 from "path";
+import * as path38 from "path";
 import { dirname as dirname5, join as join18 } from "path";
 import { statSync as statSync6, readFileSync as readFileSync5 } from "fs";
-import { fileURLToPath } from "url";
+import { fileURLToPath as fileURLToPath2 } from "url";
 import { z as z39 } from "zod";
 import { CallToolRequestSchema, ErrorCode, McpError } from "@modelcontextprotocol/sdk/types.js";
 import { getSessionId } from "@velvetmonkey/vault-core";
@@ -13029,13 +13114,13 @@ function multiHopBackfill(primaryResults, index, stateDb2, config2 = {}) {
   candidates.sort((a, b) => b.score - a.score);
   return candidates.slice(0, cfg.maxBackfill).map((c) => c.result);
 }
-function scoreCandidate(path39, index, stateDb2) {
-  const note = index.notes.get(path39);
+function scoreCandidate(path40, index, stateDb2) {
+  const note = index.notes.get(path40);
   const decay = recencyDecay(note?.modified);
   let hubScore = 1;
   if (stateDb2) {
     try {
-      const title = note?.title ?? path39.replace(/\.md$/, "").split("/").pop() ?? "";
+      const title = note?.title ?? path40.replace(/\.md$/, "").split("/").pop() ?? "";
       const entity = getEntityByName3(stateDb2, title);
       if (entity) hubScore = entity.hubScore ?? 1;
     } catch {
@@ -13495,11 +13580,11 @@ function applyEntityBridging(results, stateDb2, maxBridgesPerResult = 5) {
   const linkMap = /* @__PURE__ */ new Map();
   try {
     const paths = results.map((r) => r.path).filter(Boolean);
-    for (const path39 of paths) {
+    for (const path40 of paths) {
       const rows = stateDb2.db.prepare(
         "SELECT target FROM note_links WHERE note_path = ?"
-      ).all(path39);
-      linkMap.set(path39, new Set(rows.map((r) => r.target)));
+      ).all(path40);
+      linkMap.set(path40, new Set(rows.map((r) => r.target)));
     }
   } catch {
     return;
@@ -14639,50 +14724,6 @@ function registerGraphTools(server2, getIndex, getVaultPath, getStateDb4) {
       };
     }
   );
-  server2.tool(
-    "get_weighted_links",
-    "Use when ranking outgoing links from a note by relationship strength. Produces weighted link entries reflecting edge survival, co-session access, and source activity. Returns ranked outgoing links with weight scores. Does not include incoming links \u2014 use get_strong_connections for bidirectional.",
-    {
-      path: z2.string().describe('Path to the note (e.g., "daily/2026-02-24.md")'),
-      min_weight: z2.number().default(1).describe("Minimum weight threshold (default 1.0)"),
-      limit: z2.number().default(20).describe("Maximum number of results to return")
-    },
-    async ({ path: notePath, min_weight, limit: requestedLimit }) => {
-      const stateDb2 = getStateDb4?.();
-      if (!stateDb2) {
-        return { content: [{ type: "text", text: JSON.stringify({ error: "StateDb not initialized" }) }] };
-      }
-      const limit = Math.min(requestedLimit ?? 20, MAX_LIMIT);
-      const now = Date.now();
-      const rows = stateDb2.db.prepare(`
-        SELECT target, weight, weight_updated_at
-        FROM note_links
-        WHERE note_path = ?
-        ORDER BY weight DESC
-      `).all(notePath);
-      const results = rows.map((row) => {
-        const daysSinceUpdated = row.weight_updated_at ? (now - row.weight_updated_at) / (1e3 * 60 * 60 * 24) : 0;
-        const decayFactor = Math.max(0.1, 1 - daysSinceUpdated / 180);
-        const effectiveWeight = Math.round(row.weight * decayFactor * 1e3) / 1e3;
-        return {
-          target: row.target,
-          weight: row.weight,
-          weight_effective: effectiveWeight,
-          last_updated: row.weight_updated_at
-        };
-      }).filter((r) => r.weight_effective >= min_weight).slice(0, limit);
-      return {
-        content: [{
-          type: "text",
-          text: JSON.stringify({
-            note: notePath,
-            count: results.length,
-            links: results
-          }, null, 2)
-        }]
-      };
-    }
-  );
   server2.tool(
     "get_strong_connections",
     "Use when finding the most important relationships for a note in both directions. Produces bidirectional connections ranked by combined edge weight. Returns both incoming and outgoing links sorted by strength. Does not compute path distances \u2014 use get_link_path for shortest paths.",
@@ -15021,16 +15062,16 @@ function registerWikilinkTools(server2, getIndex, getVaultPath, getStateDb4 = ()
               const weightedStats = getWeightedEntityStats(stateDb3);
               const statsMap = new Map(weightedStats.map((s) => [s.entity.toLowerCase(), s]));
               for (const suggestion of scored.detailed) {
-                const stat5 = statsMap.get(suggestion.entity.toLowerCase());
-                if (stat5) {
+                const stat4 = statsMap.get(suggestion.entity.toLowerCase());
+                if (stat4) {
                   const effectiveAlpha = isAiConfigEntity(suggestion.entity) ? AI_CONFIG_PRIOR_ALPHA : PRIOR_ALPHA;
-                  const posteriorMean = computePosteriorMean(stat5.weightedCorrect, stat5.weightedFp, effectiveAlpha);
-                  const totalObs = effectiveAlpha + stat5.weightedCorrect + PRIOR_BETA + stat5.weightedFp;
+                  const posteriorMean = computePosteriorMean(stat4.weightedCorrect, stat4.weightedFp, effectiveAlpha);
+                  const totalObs = effectiveAlpha + stat4.weightedCorrect + PRIOR_BETA + stat4.weightedFp;
                   suggestion.suppressionContext = {
                     posteriorMean: Math.round(posteriorMean * 1e3) / 1e3,
                     totalObservations: Math.round(totalObs * 10) / 10,
                     isSuppressed: totalObs >= SUPPRESSION_MIN_OBSERVATIONS && posteriorMean < SUPPRESSION_POSTERIOR_THRESHOLD,
-                    falsePositiveRate: Math.round(stat5.weightedFpRate * 1e3) / 1e3
+                    falsePositiveRate: Math.round(stat4.weightedFpRate * 1e3) / 1e3
                   };
                 }
               }
@@ -15075,14 +15116,14 @@ function registerWikilinkTools(server2, getIndex, getVaultPath, getStateDb4 = ()
   };
   function findSimilarEntity2(target, entities) {
     const targetLower = target.toLowerCase();
-    for (const [name, path39] of entities) {
+    for (const [name, path40] of entities) {
       if (name.startsWith(targetLower) || targetLower.startsWith(name)) {
-        return path39;
+        return path40;
       }
     }
-    for (const [name, path39] of entities) {
+    for (const [name, path40] of entities) {
       if (name.includes(targetLower) || targetLower.includes(name)) {
-        return path39;
+        return path40;
       }
     }
     return void 0;
@@ -16102,8 +16143,8 @@ function registerHealthTools(server2, getIndex, getVaultPath, getConfig2 = () =>
       daily_counts: z4.record(z4.number())
     }).describe("Activity summary for the last 7 days")
   };
-  function isPeriodicNote3(path39) {
-    const filename = path39.split("/").pop() || "";
+  function isPeriodicNote3(path40) {
+    const filename = path40.split("/").pop() || "";
     const nameWithoutExt = filename.replace(/\.md$/, "");
     const patterns = [
       /^\d{4}-\d{2}-\d{2}$/,
@@ -16118,7 +16159,7 @@ function registerHealthTools(server2, getIndex, getVaultPath, getConfig2 = () =>
       // YYYY (yearly)
     ];
     const periodicFolders = ["daily", "weekly", "monthly", "quarterly", "yearly", "journal", "journals"];
-    const folder = path39.split("/")[0]?.toLowerCase() || "";
+    const folder = path40.split("/")[0]?.toLowerCase() || "";
     return patterns.some((p) => p.test(nameWithoutExt)) || periodicFolders.includes(folder);
   }
   async function runVaultStats() {
@@ -17225,13 +17266,13 @@ function registerPrimitiveTools(server2, getIndex, getVaultPath, getConfig2 = ()
         max_content_chars: z6.number().default(2e4).describe("Max total chars of section content to include. Sections are truncated at paragraph boundaries.")
       }
     },
-    async ({ path: path39, include_content, max_content_chars }) => {
+    async ({ path: path40, include_content, max_content_chars }) => {
       const index = getIndex();
       const vaultPath2 = getVaultPath();
-      const result = await getNoteStructure(index, path39, vaultPath2);
+      const result = await getNoteStructure(index, path40, vaultPath2);
       if (!result) {
         return {
-          content: [{ type: "text", text: JSON.stringify({ error: "Note not found", path: path39 }, null, 2) }]
+          content: [{ type: "text", text: JSON.stringify({ error: "Note not found", path: path40 }, null, 2) }]
         };
       }
       let totalChars = 0;
@@ -17242,7 +17283,7 @@ function registerPrimitiveTools(server2, getIndex, getVaultPath, getConfig2 = ()
             truncated = true;
             break;
           }
-          const sectionResult = await getSectionContent(index, path39, section.heading.text, vaultPath2, true);
+          const sectionResult = await getSectionContent(index, path40, section.heading.text, vaultPath2, true);
           if (sectionResult) {
             let content = sectionResult.content;
             const remaining = max_content_chars - totalChars;
@@ -17257,13 +17298,13 @@ function registerPrimitiveTools(server2, getIndex, getVaultPath, getConfig2 = ()
           }
         }
       }
-      const note = index.notes.get(path39);
+      const note = index.notes.get(path40);
       const enriched = { ...result };
       if (note) {
         enriched.frontmatter = note.frontmatter;
         enriched.tags = note.tags;
         enriched.aliases = note.aliases;
-        const normalizedPath = path39.toLowerCase().replace(/\.md$/, "");
+        const normalizedPath = path40.toLowerCase().replace(/\.md$/, "");
         const backlinks = index.backlinks.get(normalizedPath) || [];
         enriched.backlink_count = backlinks.length;
         enriched.outlink_count = note.outlinks.length;
@@ -17301,15 +17342,15 @@ function registerPrimitiveTools(server2, getIndex, getVaultPath, getConfig2 = ()
         max_content_chars: z6.number().default(1e4).describe("Max chars of section content. Truncated at paragraph boundaries.")
       }
     },
-    async ({ path: path39, heading, include_subheadings, max_content_chars }) => {
+    async ({ path: path40, heading, include_subheadings, max_content_chars }) => {
       const index = getIndex();
       const vaultPath2 = getVaultPath();
-      const result = await getSectionContent(index, path39, heading, vaultPath2, include_subheadings);
+      const result = await getSectionContent(index, path40, heading, vaultPath2, include_subheadings);
       if (!result) {
         return {
           content: [{ type: "text", text: JSON.stringify({
             error: "Section not found",
-            path: path39,
+            path: path40,
             heading
           }, null, 2) }]
         };
@@ -17370,16 +17411,16 @@ function registerPrimitiveTools(server2, getIndex, getVaultPath, getConfig2 = ()
         offset: z6.coerce.number().default(0).describe("Number of results to skip (for pagination)")
       }
     },
-    async ({ path: path39, status, has_due_date, folder, tag, limit: requestedLimit, offset }) => {
+    async ({ path: path40, status, has_due_date, folder, tag, limit: requestedLimit, offset }) => {
       const limit = Math.min(requestedLimit ?? 25, MAX_LIMIT);
       const index = getIndex();
       const vaultPath2 = getVaultPath();
       const config2 = getConfig2();
-      if (path39) {
-        const result2 = await getTasksFromNote(index, path39, vaultPath2, getExcludeTags(config2));
+      if (path40) {
+        const result2 = await getTasksFromNote(index, path40, vaultPath2, getExcludeTags(config2));
         if (!result2) {
           return {
-            content: [{ type: "text", text: JSON.stringify({ error: "Note not found", path: path39 }, null, 2) }]
+            content: [{ type: "text", text: JSON.stringify({ error: "Note not found", path: path40 }, null, 2) }]
           };
         }
         let filtered = result2;
@@ -17389,7 +17430,7 @@ function registerPrimitiveTools(server2, getIndex, getVaultPath, getConfig2 = ()
         const paged2 = filtered.slice(offset, offset + limit);
         return {
           content: [{ type: "text", text: JSON.stringify({
-            path: path39,
+            path: path40,
             total_count: filtered.length,
             returned_count: paged2.length,
             open: result2.filter((t) => t.status === "open").length,
@@ -19371,8 +19412,8 @@ function registerNoteIntelligenceTools(server2, getIndex, getVaultPath, getConfi
 // src/tools/write/mutations.ts
 init_writer();
 import { z as z12 } from "zod";
-import fs23 from "fs/promises";
-import path25 from "path";
+import fs24 from "fs/promises";
+import path26 from "path";
 
 // src/core/write/validator.ts
 var TIMESTAMP_PATTERN = /^\*\*\d{2}:\d{2}\*\*/;
@@ -19590,63 +19631,63 @@ init_constants2();
 init_writer();
 init_wikilinks();
 init_wikilinkFeedback();
-import fs22 from "fs/promises";
-import path24 from "path";
+import fs23 from "fs/promises";
+import path25 from "path";
 
 // src/core/write/policy/policyPaths.ts
-import fs21 from "fs/promises";
-import path23 from "path";
+import fs22 from "fs/promises";
+import path24 from "path";
 function getPoliciesDir(vaultPath2) {
-  return path23.join(vaultPath2, ".flywheel", "policies");
+  return path24.join(vaultPath2, ".flywheel", "policies");
 }
 function getLegacyPoliciesDir(vaultPath2) {
-  return path23.join(vaultPath2, ".claude", "policies");
+  return path24.join(vaultPath2, ".claude", "policies");
 }
 async function ensurePoliciesDir(vaultPath2) {
   const dir = getPoliciesDir(vaultPath2);
-  await fs21.mkdir(dir, { recursive: true });
+  await fs22.mkdir(dir, { recursive: true });
 }
 async function migratePoliciesIfNeeded(vaultPath2) {
   const legacyDir = getLegacyPoliciesDir(vaultPath2);
   let files;
   try {
-    files = await fs21.readdir(legacyDir);
+    files = await fs22.readdir(legacyDir);
   } catch {
     return;
   }
   const yamlFiles = files.filter((f) => f.endsWith(".yaml") || f.endsWith(".yml"));
   if (yamlFiles.length === 0) {
     await tryRmdir(legacyDir);
-    await tryRmdir(path23.join(vaultPath2, ".claude"));
+    await tryRmdir(path24.join(vaultPath2, ".claude"));
     return;
   }
   await ensurePoliciesDir(vaultPath2);
   const destDir = getPoliciesDir(vaultPath2);
   for (const file of yamlFiles) {
-    const src = path23.join(legacyDir, file);
-    const dest = path23.join(destDir, file);
+    const src = path24.join(legacyDir, file);
+    const dest = path24.join(destDir, file);
     try {
-      await fs21.access(dest);
+      await fs22.access(dest);
     } catch {
-      await fs21.copyFile(src, dest);
+      await fs22.copyFile(src, dest);
     }
-    await fs21.unlink(src);
+    await fs22.unlink(src);
   }
   await tryRmdir(legacyDir);
-  await tryRmdir(path23.join(vaultPath2, ".claude"));
+  await tryRmdir(path24.join(vaultPath2, ".claude"));
 }
 async function tryRmdir(dir) {
   try {
-    const remaining = await fs21.readdir(dir);
+    const remaining = await fs22.readdir(dir);
     if (remaining.length === 0) {
-      await fs21.rmdir(dir);
+      await fs22.rmdir(dir);
     }
   } catch {
   }
 }
 var migrationCache = /* @__PURE__ */ new Map();
 async function ensureMigrated(vaultPath2) {
-  const key = path23.resolve(vaultPath2);
+  const key = path24.resolve(vaultPath2);
   if (!migrationCache.has(key)) {
     migrationCache.set(key, migratePoliciesIfNeeded(vaultPath2));
   }
@@ -19702,7 +19743,7 @@ async function handleGitCommit(vaultPath2, notePath, commit, prefix) {
 async function getPolicyHint(vaultPath2) {
   try {
     const policiesDir = getPoliciesDir(vaultPath2);
-    const files = await fs22.readdir(policiesDir);
+    const files = await fs23.readdir(policiesDir);
     const yamlFiles = files.filter((f) => f.endsWith(".yaml") || f.endsWith(".yml"));
     if (yamlFiles.length > 0) {
       const names = yamlFiles.map((f) => f.replace(/\.ya?ml$/, "")).join(", ");
@@ -19713,9 +19754,9 @@ async function getPolicyHint(vaultPath2) {
   return "";
 }
 async function ensureFileExists(vaultPath2, notePath) {
-  const fullPath = path24.join(vaultPath2, notePath);
+  const fullPath = path25.join(vaultPath2, notePath);
   try {
-    await fs22.access(fullPath);
+    await fs23.access(fullPath);
     return null;
   } catch {
     const hint = await getPolicyHint(vaultPath2);
@@ -19918,17 +19959,17 @@ async function executeCreateNote(options) {
     if (!pathCheck.valid) {
       return { success: false, result: errorResult(notePath, `Path blocked: ${pathCheck.reason}`), filesWritten: [] };
     }
-    const fullPath = path24.join(vaultPath2, notePath);
+    const fullPath = path25.join(vaultPath2, notePath);
     let fileExists = false;
     try {
-      await fs22.access(fullPath);
+      await fs23.access(fullPath);
       fileExists = true;
     } catch {
     }
     if (fileExists && !overwrite) {
       return { success: false, result: errorResult(notePath, `File already exists: ${notePath}. Use overwrite=true to replace.`), filesWritten: [] };
     }
-    await fs22.mkdir(path24.dirname(fullPath), { recursive: true });
+    await fs23.mkdir(path25.dirname(fullPath), { recursive: true });
     const { maybeApplyWikilinks: maybeApplyWikilinks2 } = await Promise.resolve().then(() => (init_wikilinks(), wikilinks_exports));
     const { content: processedContent } = maybeApplyWikilinks2(content, skipWikilinks ?? false, notePath);
     let finalFrontmatter = frontmatter;
@@ -19962,13 +20003,13 @@ async function executeDeleteNote(options) {
     if (!pathCheck.valid) {
       return { success: false, result: errorResult(notePath, `Path blocked: ${pathCheck.reason}`), filesWritten: [] };
     }
-    const fullPath = path24.join(vaultPath2, notePath);
+    const fullPath = path25.join(vaultPath2, notePath);
     try {
-      await fs22.access(fullPath);
+      await fs23.access(fullPath);
     } catch {
       return { success: false, result: errorResult(notePath, `File not found: ${notePath}`), filesWritten: [] };
     }
-    await fs22.unlink(fullPath);
+    await fs23.unlink(fullPath);
     const result = successResult(notePath, `Deleted note: ${notePath}`, {});
     return { success: true, result, filesWritten: [notePath] };
   } catch (error) {
@@ -19986,10 +20027,10 @@ async function createNoteFromTemplate(vaultPath2, notePath, config2) {
   if (!validation.valid) {
     throw new Error(`Path blocked: ${validation.reason}`);
   }
-  const fullPath = path25.join(vaultPath2, notePath);
-  await fs23.mkdir(path25.dirname(fullPath), { recursive: true });
+  const fullPath = path26.join(vaultPath2, notePath);
+  await fs24.mkdir(path26.dirname(fullPath), { recursive: true });
   const templates = config2.templates || {};
-  const filename = path25.basename(notePath, ".md").toLowerCase();
+  const filename = path26.basename(notePath, ".md").toLowerCase();
   let templatePath;
   let periodicType;
   const dailyPattern = /^\d{4}-\d{2}-\d{2}/;
@@ -20022,7 +20063,7 @@ async function createNoteFromTemplate(vaultPath2, notePath, config2) {
     ];
     for (const candidate of candidates) {
       try {
-        await fs23.access(path25.join(vaultPath2, candidate));
+        await fs24.access(path26.join(vaultPath2, candidate));
         templatePath = candidate;
         console.error(`[Flywheel] Template not in config but found at ${candidate} \u2014 using it`);
         break;
@@ -20033,11 +20074,11 @@ async function createNoteFromTemplate(vaultPath2, notePath, config2) {
   let templateContent;
   if (templatePath) {
     try {
-      const absTemplatePath = path25.join(vaultPath2, templatePath);
-      templateContent = await fs23.readFile(absTemplatePath, "utf-8");
+      const absTemplatePath = path26.join(vaultPath2, templatePath);
+      templateContent = await fs24.readFile(absTemplatePath, "utf-8");
     } catch {
       console.error(`[Flywheel] Template at ${templatePath} not readable, using minimal fallback`);
-      const title = path25.basename(notePath, ".md");
+      const title = path26.basename(notePath, ".md");
       templateContent = `---
 ---
 
@@ -20049,7 +20090,7 @@ async function createNoteFromTemplate(vaultPath2, notePath, config2) {
     if (periodicType) {
       console.error(`[Flywheel] No ${periodicType} template found in config or vault \u2014 using minimal fallback`);
     }
-    const title = path25.basename(notePath, ".md");
+    const title = path26.basename(notePath, ".md");
     templateContent = `---
 ---
 
@@ -20058,7 +20099,7 @@ async function createNoteFromTemplate(vaultPath2, notePath, config2) {
   }
   const now = /* @__PURE__ */ new Date();
   const dateStr = now.toISOString().split("T")[0];
-  templateContent = templateContent.replace(/\{\{date\}\}/g, dateStr).replace(/\{\{title\}\}/g, path25.basename(notePath, ".md"));
+  templateContent = templateContent.replace(/\{\{date\}\}/g, dateStr).replace(/\{\{title\}\}/g, path26.basename(notePath, ".md"));
   const matter9 = (await import("gray-matter")).default;
   const parsed = matter9(templateContent);
   if (!parsed.data.date) {
@@ -20097,9 +20138,9 @@ function registerMutationTools(server2, getVaultPath, getConfig2 = () => ({})) {
       let noteCreated = false;
       let templateUsed;
       if (create_if_missing && !dry_run) {
-        const fullPath = path25.join(vaultPath2, notePath);
+        const fullPath = path26.join(vaultPath2, notePath);
         try {
-          await fs23.access(fullPath);
+          await fs24.access(fullPath);
         } catch {
           const config2 = getConfig2();
           const result = await createNoteFromTemplate(vaultPath2, notePath, config2);
@@ -20108,9 +20149,9 @@ function registerMutationTools(server2, getVaultPath, getConfig2 = () => ({})) {
         }
       }
       if (create_if_missing && dry_run) {
-        const fullPath = path25.join(vaultPath2, notePath);
+        const fullPath = path26.join(vaultPath2, notePath);
         try {
-          await fs23.access(fullPath);
+          await fs24.access(fullPath);
         } catch {
           return {
             content: [{
@@ -20594,8 +20635,8 @@ function registerFrontmatterTools(server2, getVaultPath) {
 init_writer();
 init_wikilinks();
 import { z as z15 } from "zod";
-import fs24 from "fs/promises";
-import path26 from "path";
+import fs25 from "fs/promises";
+import path27 from "path";
 function registerNoteTools(server2, getVaultPath, getIndex) {
   server2.tool(
     "vault_create_note",
@@ -20621,23 +20662,23 @@ function registerNoteTools(server2, getVaultPath, getIndex) {
         if (!validatePath(vaultPath2, notePath)) {
           return formatMcpResult(errorResult(notePath, "Invalid path: path traversal not allowed"));
         }
-        const fullPath = path26.join(vaultPath2, notePath);
+        const fullPath = path27.join(vaultPath2, notePath);
         const existsCheck = await ensureFileExists(vaultPath2, notePath);
         if (existsCheck === null && !overwrite) {
           return formatMcpResult(errorResult(notePath, `File already exists: ${notePath}. Use overwrite=true to replace.`));
         }
-        const dir = path26.dirname(fullPath);
-        await fs24.mkdir(dir, { recursive: true });
+        const dir = path27.dirname(fullPath);
+        await fs25.mkdir(dir, { recursive: true });
         let effectiveContent = content;
         let effectiveFrontmatter = frontmatter;
         if (template) {
-          const templatePath = path26.join(vaultPath2, template);
+          const templatePath = path27.join(vaultPath2, template);
           try {
-            const raw = await fs24.readFile(templatePath, "utf-8");
+            const raw = await fs25.readFile(templatePath, "utf-8");
             const matter9 = (await import("gray-matter")).default;
             const parsed = matter9(raw);
             const dateStr = (/* @__PURE__ */ new Date()).toISOString().split("T")[0];
-            const title = path26.basename(notePath, ".md");
+            const title = path27.basename(notePath, ".md");
             let templateContent = parsed.content.replace(/\{\{date\}\}/g, dateStr).replace(/\{\{title\}\}/g, title);
             if (content) {
               templateContent = templateContent.trimEnd() + "\n\n" + content;
@@ -20656,7 +20697,7 @@ function registerNoteTools(server2, getVaultPath, getIndex) {
           effectiveFrontmatter.created = now.toISOString();
         }
         const warnings = [];
-        const noteName = path26.basename(notePath, ".md");
+        const noteName = path27.basename(notePath, ".md");
         const existingAliases = Array.isArray(effectiveFrontmatter?.aliases) ? effectiveFrontmatter.aliases.filter((a) => typeof a === "string") : [];
         const preflight = await checkPreflightSimilarity(noteName);
         if (preflight.existingEntity) {
@@ -20797,8 +20838,8 @@ ${sources}`;
           }
           return formatMcpResult(errorResult(notePath, previewLines.join("\n")));
         }
-        const fullPath = path26.join(vaultPath2, notePath);
-        await fs24.unlink(fullPath);
+        const fullPath = path27.join(vaultPath2, notePath);
+        await fs25.unlink(fullPath);
         const gitInfo = await handleGitCommit(vaultPath2, notePath, commit, "[Flywheel:Delete]");
         const message = backlinkWarning ? `Deleted note: ${notePath}
 
@@ -20818,8 +20859,8 @@ init_writer();
 init_git();
 init_wikilinks();
 import { z as z16 } from "zod";
-import fs25 from "fs/promises";
-import path27 from "path";
+import fs26 from "fs/promises";
+import path28 from "path";
 import matter6 from "gray-matter";
 function escapeRegex(str) {
   return str.replace(/[.*+?^${}()|[\]\\]/g, "\\$&");
@@ -20838,16 +20879,16 @@ function extractWikilinks2(content) {
   return wikilinks;
 }
 function getTitleFromPath(filePath) {
-  return path27.basename(filePath, ".md");
+  return path28.basename(filePath, ".md");
 }
 async function findBacklinks(vaultPath2, targetTitle, targetAliases) {
   const results = [];
   const allTargets = [targetTitle, ...targetAliases].map((t) => t.toLowerCase());
   async function scanDir(dir) {
     const files = [];
-    const entries = await fs25.readdir(dir, { withFileTypes: true });
+    const entries = await fs26.readdir(dir, { withFileTypes: true });
     for (const entry of entries) {
-      const fullPath = path27.join(dir, entry.name);
+      const fullPath = path28.join(dir, entry.name);
       if (entry.isDirectory() && !entry.name.startsWith(".")) {
         files.push(...await scanDir(fullPath));
       } else if (entry.isFile() && entry.name.endsWith(".md")) {
@@ -20858,8 +20899,8 @@ async function findBacklinks(vaultPath2, targetTitle, targetAliases) {
   }
   const allFiles = await scanDir(vaultPath2);
   for (const filePath of allFiles) {
-    const relativePath = path27.relative(vaultPath2, filePath);
-    const content = await fs25.readFile(filePath, "utf-8");
+    const relativePath = path28.relative(vaultPath2, filePath);
+    const content = await fs26.readFile(filePath, "utf-8");
     const wikilinks = extractWikilinks2(content);
     const matchingLinks = [];
     for (const link of wikilinks) {
@@ -20945,10 +20986,10 @@ function registerMoveNoteTools(server2, getVaultPath) {
           };
           return { content: [{ type: "text", text: JSON.stringify(result2, null, 2) }] };
         }
-        const oldFullPath = path27.join(vaultPath2, oldPath);
-        const newFullPath = path27.join(vaultPath2, newPath);
+        const oldFullPath = path28.join(vaultPath2, oldPath);
+        const newFullPath = path28.join(vaultPath2, newPath);
         try {
-          await fs25.access(oldFullPath);
+          await fs26.access(oldFullPath);
         } catch {
           const result2 = {
             success: false,
@@ -20958,7 +20999,7 @@ function registerMoveNoteTools(server2, getVaultPath) {
           return { content: [{ type: "text", text: JSON.stringify(result2, null, 2) }] };
         }
         try {
-          await fs25.access(newFullPath);
+          await fs26.access(newFullPath);
           const result2 = {
             success: false,
             message: `Destination already exists: ${newPath}`,
@@ -20967,7 +21008,7 @@ function registerMoveNoteTools(server2, getVaultPath) {
           return { content: [{ type: "text", text: JSON.stringify(result2, null, 2) }] };
         } catch {
         }
-        const sourceContent = await fs25.readFile(oldFullPath, "utf-8");
+        const sourceContent = await fs26.readFile(oldFullPath, "utf-8");
         const parsed = matter6(sourceContent);
         const aliases = extractAliases2(parsed.data);
         const oldTitle = getTitleFromPath(oldPath);
@@ -21027,9 +21068,9 @@ function registerMoveNoteTools(server2, getVaultPath) {
           };
           return { content: [{ type: "text", text: JSON.stringify(result2, null, 2) }] };
         }
-        const destDir = path27.dirname(newFullPath);
-        await fs25.mkdir(destDir, { recursive: true });
-        await fs25.rename(oldFullPath, newFullPath);
+        const destDir = path28.dirname(newFullPath);
+        await fs26.mkdir(destDir, { recursive: true });
+        await fs26.rename(oldFullPath, newFullPath);
         let gitCommit;
         let undoAvailable;
         let staleLockDetected;
@@ -21103,12 +21144,12 @@ function registerMoveNoteTools(server2, getVaultPath) {
         if (sanitizedTitle !== newTitle) {
           console.error(`[Flywheel] Title sanitized: "${newTitle}" \u2192 "${sanitizedTitle}"`);
         }
-        const fullPath = path27.join(vaultPath2, notePath);
-        const dir = path27.dirname(notePath);
-        const newPath = dir === "." ? `${sanitizedTitle}.md` : path27.join(dir, `${sanitizedTitle}.md`);
-        const newFullPath = path27.join(vaultPath2, newPath);
+        const fullPath = path28.join(vaultPath2, notePath);
+        const dir = path28.dirname(notePath);
+        const newPath = dir === "." ? `${sanitizedTitle}.md` : path28.join(dir, `${sanitizedTitle}.md`);
+        const newFullPath = path28.join(vaultPath2, newPath);
         try {
-          await fs25.access(fullPath);
+          await fs26.access(fullPath);
         } catch {
           const result2 = {
             success: false,
@@ -21119,7 +21160,7 @@ function registerMoveNoteTools(server2, getVaultPath) {
         }
         if (fullPath !== newFullPath) {
           try {
-            await fs25.access(newFullPath);
+            await fs26.access(newFullPath);
             const result2 = {
               success: false,
               message: `A note with this title already exists: ${newPath}`,
@@ -21129,7 +21170,7 @@ function registerMoveNoteTools(server2, getVaultPath) {
           } catch {
           }
         }
-        const sourceContent = await fs25.readFile(fullPath, "utf-8");
+        const sourceContent = await fs26.readFile(fullPath, "utf-8");
         const parsed = matter6(sourceContent);
         const aliases = extractAliases2(parsed.data);
         const oldTitle = getTitleFromPath(notePath);
@@ -21189,7 +21230,7 @@ function registerMoveNoteTools(server2, getVaultPath) {
           return { content: [{ type: "text", text: JSON.stringify(result2, null, 2) }] };
         }
         if (fullPath !== newFullPath) {
-          await fs25.rename(fullPath, newFullPath);
+          await fs26.rename(fullPath, newFullPath);
         }
         let gitCommit;
         let undoAvailable;
@@ -21237,8 +21278,8 @@ function registerMoveNoteTools(server2, getVaultPath) {
 init_writer();
 init_wikilinks();
 import { z as z17 } from "zod";
-import fs26 from "fs/promises";
-import path28 from "path";
+import fs27 from "fs/promises";
+import path29 from "path";
 function registerMergeTools(server2, getVaultPath) {
   server2.tool(
     "merge_entities",
@@ -21365,7 +21406,7 @@ ${trimmedSource}`;
         }
         await writeVaultFile(vaultPath2, target_path, targetContent, targetFrontmatter, "LF", targetContentHash);
         const fullSourcePath = `${vaultPath2}/${source_path}`;
-        await fs26.unlink(fullSourcePath);
+        await fs27.unlink(fullSourcePath);
         initializeEntityIndex(vaultPath2).catch((err) => {
           console.error(`[Flywheel] Entity cache rebuild failed: ${err}`);
         });
@@ -21480,7 +21521,7 @@ ${trimmedSource}`;
           }
           let sourceDeleted = false;
           if (sourceNoteFile) {
-            await fs26.unlink(`${vaultPath2}/${sourceNoteFile}`);
+            await fs27.unlink(`${vaultPath2}/${sourceNoteFile}`);
             sourceDeleted = true;
           }
           initializeEntityIndex(vaultPath2).catch((err) => {
@@ -21529,21 +21570,21 @@ async function findSourceNote(vaultPath2, sourceName, excludePath) {
   async function scanDir(dir) {
     let entries;
     try {
-      entries = await fs26.readdir(dir, { withFileTypes: true });
+      entries = await fs27.readdir(dir, { withFileTypes: true });
     } catch {
       return null;
     }
     for (const entry of entries) {
       if (entry.name.startsWith(".")) continue;
-      const fullPath = path28.join(dir, entry.name);
+      const fullPath = path29.join(dir, entry.name);
       if (entry.isDirectory()) {
         const found = await scanDir(fullPath);
         if (found) return found;
       } else if (entry.isFile() && entry.name.endsWith(".md")) {
-        const basename5 = path28.basename(entry.name, ".md");
+        const basename5 = path29.basename(entry.name, ".md");
         if (basename5.toLowerCase() === targetLower) {
-          const relative3 = path28.relative(vaultPath2, fullPath).replace(/\\/g, "/");
-          if (relative3 !== excludePath) return relative3;
+          const relative2 = path29.relative(vaultPath2, fullPath).replace(/\\/g, "/");
+          if (relative2 !== excludePath) return relative2;
         }
       }
     }
@@ -21663,7 +21704,7 @@ Message: ${undoResult.undoneCommit.message}` : void 0
 }
 
 // src/tools/write/policy.ts
-import * as path33 from "path";
+import * as path34 from "path";
 import { z as z20 } from "zod";
 
 // src/core/write/policy/index.ts
@@ -21672,8 +21713,8 @@ init_schema();
 
 // src/core/write/policy/parser.ts
 init_schema();
-import fs27 from "fs/promises";
-import path29 from "path";
+import fs28 from "fs/promises";
+import path30 from "path";
 import matter7 from "gray-matter";
 function parseYaml(content) {
   const parsed = matter7(`---
@@ -21698,7 +21739,7 @@ function parsePolicyString(yamlContent) {
 }
 async function loadPolicyFile(filePath) {
   try {
-    const content = await fs27.readFile(filePath, "utf-8");
+    const content = await fs28.readFile(filePath, "utf-8");
     return parsePolicyString(content);
   } catch (error) {
     if (error.code === "ENOENT") {
@@ -21724,14 +21765,14 @@ async function loadPolicyFile(filePath) {
 async function loadPolicy(vaultPath2, policyName) {
   await ensureMigrated(vaultPath2);
   const policiesDir = getPoliciesDir(vaultPath2);
-  const policyPath = path29.join(policiesDir, `${policyName}.yaml`);
+  const policyPath = path30.join(policiesDir, `${policyName}.yaml`);
   try {
-    await fs27.access(policyPath);
+    await fs28.access(policyPath);
     return loadPolicyFile(policyPath);
   } catch {
-    const ymlPath = path29.join(policiesDir, `${policyName}.yml`);
+    const ymlPath = path30.join(policiesDir, `${policyName}.yml`);
     try {
-      await fs27.access(ymlPath);
+      await fs28.access(ymlPath);
       return loadPolicyFile(ymlPath);
     } catch {
       return {
@@ -21871,8 +21912,8 @@ init_schema();
 init_writer();
 init_git();
 init_wikilinks();
-import fs29 from "fs/promises";
-import path31 from "path";
+import fs30 from "fs/promises";
+import path32 from "path";
 init_constants2();
 async function executeStep(step, vaultPath2, context, conditionResults, searchFn) {
   const { execute, reason } = shouldStepExecute(step.when, conditionResults);
@@ -22063,12 +22104,12 @@ async function executeCreateNote2(params, vaultPath2, context) {
   let frontmatter = params.frontmatter || {};
   if (params.template) {
     try {
-      const templatePath = path31.join(vaultPath2, String(params.template));
-      const raw = await fs29.readFile(templatePath, "utf-8");
+      const templatePath = path32.join(vaultPath2, String(params.template));
+      const raw = await fs30.readFile(templatePath, "utf-8");
       const matter9 = (await import("gray-matter")).default;
       const parsed = matter9(raw);
       const dateStr = (/* @__PURE__ */ new Date()).toISOString().split("T")[0];
-      const title = path31.basename(notePath, ".md");
+      const title = path32.basename(notePath, ".md");
       let templateContent = parsed.content.replace(/\{\{date\}\}/g, dateStr).replace(/\{\{title\}\}/g, title);
       if (content) {
         templateContent = templateContent.trimEnd() + "\n\n" + content;
@@ -22101,9 +22142,9 @@ async function executeToggleTask(params, vaultPath2) {
   const notePath = String(params.path || "");
   const task = String(params.task || "");
   const section = params.section ? String(params.section) : void 0;
-  const fullPath = path31.join(vaultPath2, notePath);
+  const fullPath = path32.join(vaultPath2, notePath);
   try {
-    await fs29.access(fullPath);
+    await fs30.access(fullPath);
   } catch {
     return { success: false, message: `File not found: ${notePath}`, path: notePath };
   }
@@ -22384,15 +22425,15 @@ async function rollbackChanges(vaultPath2, originalContents, filesModified) {
     const pathCheck = await validatePathSecure(vaultPath2, filePath);
     if (!pathCheck.valid) continue;
     const original = originalContents.get(filePath);
-    const fullPath = path31.join(vaultPath2, filePath);
+    const fullPath = path32.join(vaultPath2, filePath);
     if (original === null) {
       try {
-        await fs29.unlink(fullPath);
+        await fs30.unlink(fullPath);
       } catch {
       }
     } else if (original !== void 0) {
       try {
-        await fs29.writeFile(fullPath, original);
+        await fs30.writeFile(fullPath, original);
       } catch {
       }
     }
@@ -22438,27 +22479,27 @@ async function previewPolicy(policy, vaultPath2, variables) {
 }
 
 // src/core/write/policy/storage.ts
-import fs30 from "fs/promises";
-import path32 from "path";
+import fs31 from "fs/promises";
+import path33 from "path";
 async function listPolicies(vaultPath2) {
   await ensureMigrated(vaultPath2);
   const dir = getPoliciesDir(vaultPath2);
   const policies = [];
   try {
-    const files = await fs30.readdir(dir);
+    const files = await fs31.readdir(dir);
     for (const file of files) {
       if (!file.endsWith(".yaml") && !file.endsWith(".yml")) {
         continue;
       }
-      const filePath = path32.join(dir, file);
-      const stat5 = await fs30.stat(filePath);
-      const content = await fs30.readFile(filePath, "utf-8");
+      const filePath = path33.join(dir, file);
+      const stat4 = await fs31.stat(filePath);
+      const content = await fs31.readFile(filePath, "utf-8");
       const metadata = extractPolicyMetadata(content);
       policies.push({
         name: metadata.name || file.replace(/\.ya?ml$/, ""),
         description: metadata.description || "No description",
         path: file,
-        lastModified: stat5.mtime,
+        lastModified: stat4.mtime,
         version: metadata.version || "1.0",
         requiredVariables: metadata.variables || []
       });
@@ -22476,10 +22517,10 @@ async function writePolicyRaw(vaultPath2, policyName, content, overwrite = false
   const dir = getPoliciesDir(vaultPath2);
   await ensurePoliciesDir(vaultPath2);
   const filename = `${policyName}.yaml`;
-  const filePath = path32.join(dir, filename);
+  const filePath = path33.join(dir, filename);
   if (!overwrite) {
     try {
-      await fs30.access(filePath);
+      await fs31.access(filePath);
       return {
         success: false,
         path: filename,
@@ -22496,7 +22537,7 @@ async function writePolicyRaw(vaultPath2, policyName, content, overwrite = false
       message: `Invalid policy: ${validation.errors.map((e) => e.message).join("; ")}`
     };
   }
-  await fs30.writeFile(filePath, content, "utf-8");
+  await fs31.writeFile(filePath, content, "utf-8");
   return {
     success: true,
     path: filename,
@@ -22590,7 +22631,7 @@ function registerPolicyTools(server2, getVaultPath, getSearchFn) {
             const policies = await listPolicies(vaultPath2);
             const response = {
               success: true,
-              vault: path33.basename(vaultPath2),
+              vault: path34.basename(vaultPath2),
               vault_path: vaultPath2,
               count: policies.length,
               policies: policies.map((p) => ({
@@ -23023,8 +23064,8 @@ function registerPolicyTools(server2, getVaultPath, getSearchFn) {
 import { z as z21 } from "zod";
 
 // src/core/write/tagRename.ts
-import * as fs31 from "fs/promises";
-import * as path34 from "path";
+import * as fs32 from "fs/promises";
+import * as path35 from "path";
 import matter8 from "gray-matter";
 import { getProtectedZones as getProtectedZones2 } from "@velvetmonkey/vault-core";
 function getNotesInFolder3(index, folder) {
@@ -23130,10 +23171,10 @@ async function renameTag(index, vaultPath2, oldTag, newTag, options) {
   const previews = [];
   let totalChanges = 0;
   for (const note of affectedNotes) {
-    const fullPath = path34.join(vaultPath2, note.path);
+    const fullPath = path35.join(vaultPath2, note.path);
     let fileContent;
     try {
-      fileContent = await fs31.readFile(fullPath, "utf-8");
+      fileContent = await fs32.readFile(fullPath, "utf-8");
     } catch {
       continue;
     }
@@ -23206,7 +23247,7 @@ async function renameTag(index, vaultPath2, oldTag, newTag, options) {
       previews.push(preview);
       if (!dryRun) {
         const newContent = matter8.stringify(updatedContent, fm);
-        await fs31.writeFile(fullPath, newContent, "utf-8");
+        await fs32.writeFile(fullPath, newContent, "utf-8");
       }
     }
   }
@@ -24259,8 +24300,8 @@ function registerConfigTools(server2, getConfig2, setConfig, getStateDb4) {
 init_wikilinks();
 init_wikilinkFeedback();
 import { z as z28 } from "zod";
-import * as fs32 from "fs/promises";
-import * as path35 from "path";
+import * as fs33 from "fs/promises";
+import * as path36 from "path";
 import { scanVaultEntities as scanVaultEntities4, SCHEMA_VERSION as SCHEMA_VERSION2 } from "@velvetmonkey/vault-core";
 init_embeddings();
 function hasSkipWikilinks(content) {
@@ -24273,16 +24314,16 @@ function hasSkipWikilinks(content) {
 async function collectMarkdownFiles(dirPath, basePath, excludeFolders) {
   const results = [];
   try {
-    const entries = await fs32.readdir(dirPath, { withFileTypes: true });
+    const entries = await fs33.readdir(dirPath, { withFileTypes: true });
     for (const entry of entries) {
       if (entry.name.startsWith(".")) continue;
-      const fullPath = path35.join(dirPath, entry.name);
+      const fullPath = path36.join(dirPath, entry.name);
       if (entry.isDirectory()) {
         if (excludeFolders.some((f) => entry.name.toLowerCase() === f.toLowerCase())) continue;
         const sub = await collectMarkdownFiles(fullPath, basePath, excludeFolders);
         results.push(...sub);
       } else if (entry.isFile() && entry.name.endsWith(".md")) {
-        results.push(path35.relative(basePath, fullPath));
+        results.push(path36.relative(basePath, fullPath));
       }
     }
   } catch {
@@ -24312,7 +24353,7 @@ var EXCLUDE_FOLDERS = [
 ];
 function buildStatusReport(stateDb2, vaultPath2) {
   const recommendations = [];
-  const dbPath = path35.join(vaultPath2, ".flywheel", "state.db");
+  const dbPath = path36.join(vaultPath2, ".flywheel", "state.db");
   const statedbExists = stateDb2 !== null;
   if (!statedbExists) {
     recommendations.push("StateDb not initialized \u2014 server needs restart");
@@ -24439,10 +24480,10 @@ async function executeRun(stateDb2, vaultPath2) {
       const allFiles = await collectMarkdownFiles(vaultPath2, vaultPath2, EXCLUDE_FOLDERS);
       let eligible = 0;
       for (const relativePath of allFiles) {
-        const fullPath = path35.join(vaultPath2, relativePath);
+        const fullPath = path36.join(vaultPath2, relativePath);
         let content;
         try {
-          content = await fs32.readFile(fullPath, "utf-8");
+          content = await fs33.readFile(fullPath, "utf-8");
         } catch {
           continue;
         }
@@ -24497,10 +24538,10 @@ async function executeEnrich(stateDb2, vaultPath2, dryRun, batchSize, offset) {
   const eligible = [];
   let notesSkipped = 0;
   for (const relativePath of allFiles) {
-    const fullPath = path35.join(vaultPath2, relativePath);
+    const fullPath = path36.join(vaultPath2, relativePath);
     let content;
     try {
-      content = await fs32.readFile(fullPath, "utf-8");
+      content = await fs33.readFile(fullPath, "utf-8");
     } catch {
       continue;
     }
@@ -24527,8 +24568,8 @@ async function executeEnrich(stateDb2, vaultPath2, dryRun, batchSize, offset) {
       match_count: result.linksAdded
     });
     if (!dryRun) {
-      const fullPath = path35.join(vaultPath2, relativePath);
-      await fs32.writeFile(fullPath, result.content, "utf-8");
+      const fullPath = path36.join(vaultPath2, relativePath);
+      await fs33.writeFile(fullPath, result.content, "utf-8");
       notesModified++;
       if (stateDb2) {
         trackWikilinkApplications(stateDb2, relativePath, entities, "enrichment");
@@ -24705,8 +24746,8 @@ function registerMetricsTools(server2, getIndex, getStateDb4) {
 import { z as z30 } from "zod";
 
 // src/core/read/similarity.ts
-import * as fs33 from "fs";
-import * as path36 from "path";
+import * as fs34 from "fs";
+import * as path37 from "path";
 init_embeddings();
 
 // src/core/read/mmr.ts
@@ -24776,10 +24817,10 @@ function extractKeyTerms(content, maxTerms = 15) {
 }
 function findSimilarNotes(db4, vaultPath2, index, sourcePath, options = {}) {
   const limit = options.limit ?? 10;
-  const absPath = path36.join(vaultPath2, sourcePath);
+  const absPath = path37.join(vaultPath2, sourcePath);
   let content;
   try {
-    content = fs33.readFileSync(absPath, "utf-8");
+    content = fs34.readFileSync(absPath, "utf-8");
   } catch {
     return [];
   }
@@ -24918,7 +24959,7 @@ function registerSimilarityTools(server2, getIndex, getVaultPath, getStateDb4) {
         diversity: z30.number().min(0).max(1).optional().describe("Relevance vs diversity tradeoff (0=max diversity, 1=pure relevance, default: 0.7)")
       }
     },
-    async ({ path: path39, limit, diversity }) => {
+    async ({ path: path40, limit, diversity }) => {
       const index = getIndex();
       const vaultPath2 = getVaultPath();
       const stateDb2 = getStateDb4();
@@ -24927,10 +24968,10 @@ function registerSimilarityTools(server2, getIndex, getVaultPath, getStateDb4) {
           content: [{ type: "text", text: JSON.stringify({ error: "StateDb not available" }) }]
         };
       }
-      if (!index.notes.has(path39)) {
+      if (!index.notes.has(path40)) {
         return {
           content: [{ type: "text", text: JSON.stringify({
-            error: `Note not found: ${path39}`,
+            error: `Note not found: ${path40}`,
             hint: "Use the full relative path including .md extension"
           }, null, 2) }]
         };
@@ -24942,12 +24983,12 @@ function registerSimilarityTools(server2, getIndex, getVaultPath, getStateDb4) {
       };
       const useHybrid = hasEmbeddingsIndex();
       const method = useHybrid ? "hybrid" : "bm25";
-      const results = useHybrid ? await findHybridSimilarNotes(stateDb2.db, vaultPath2, index, path39, opts) : findSimilarNotes(stateDb2.db, vaultPath2, index, path39, opts);
+      const results = useHybrid ? await findHybridSimilarNotes(stateDb2.db, vaultPath2, index, path40, opts) : findSimilarNotes(stateDb2.db, vaultPath2, index, path40, opts);
       return {
         content: [{
           type: "text",
           text: JSON.stringify({
-            source: path39,
+            source: path40,
             method,
             count: results.length,
             similar: results
@@ -26821,7 +26862,7 @@ function registerVaultResources(server2, getIndex) {
 }
 
 // src/tool-registry.ts
-var __trFilename = fileURLToPath(import.meta.url);
+var __trFilename = fileURLToPath2(import.meta.url);
 var __trDirname = dirname5(__trFilename);
 var trPkg = JSON.parse(readFileSync5(join18(__trDirname, "../package.json"), "utf-8"));
 var ACTIVATION_PATTERNS = [
@@ -27053,7 +27094,7 @@ function applyToolGating(targetServer, categories, getDb4, registry, getVaultPat
               let totalBytes = 0;
               for (const p of notePaths) {
                 try {
-                  totalBytes += statSync6(path37.join(vp, p)).size;
+                  totalBytes += statSync6(path38.join(vp, p)).size;
                 } catch {
                 }
               }
@@ -27227,7 +27268,7 @@ function applyToolGating(targetServer, categories, getDb4, registry, getVaultPat
     const serverAny = targetServer;
     serverAny.server.setRequestHandler(CallToolRequestSchema, async (request, extra) => {
       try {
-        const tool = serverAny._registeredTools[request.params.name];
+        const tool = toolHandles.get(request.params.name);
         if (!tool) {
           throw new McpError(ErrorCode.InvalidParams, `Tool ${request.params.name} not found`);
         }
@@ -27404,8 +27445,8 @@ function registerAllTools(targetServer, ctx, controller) {
 }
 
 // src/index.ts
-var __filename = fileURLToPath2(import.meta.url);
-var __dirname = dirname7(__filename);
+var __filename2 = fileURLToPath3(import.meta.url);
+var __dirname = dirname7(__filename2);
 var pkg = JSON.parse(readFileSync6(join20(__dirname, "../package.json"), "utf-8"));
 var vaultPath;
 var resolvedVaultPath;
@@ -27420,6 +27461,7 @@ var serverReady = false;
 var shutdownRequested = false;
 var lastMcpRequestAt = 0;
 var lastFullRebuildAt = 0;
+var startupScanFiles = null;
 var deferredScheduler = null;
 function getWatcherStatus() {
   if (vaultRegistry) {
@@ -27628,7 +27670,7 @@ function buildVaultScope(ctx) {
     pipelineActivity: ctx.pipelineActivity
   };
 }
-function activateVault(ctx) {
+function activateVault(ctx, skipEmbeddingLoad = false) {
   globalThis.__flywheel_active_vault = ctx.name;
   if (ctx.stateDb) {
     setWriteStateDb(ctx.stateDb);
@@ -27637,7 +27679,9 @@ function activateVault(ctx) {
     setProspectStateDb(ctx.stateDb);
     setTaskCacheDatabase(ctx.stateDb.db);
     setEmbeddingsDatabase(ctx.stateDb.db);
-    loadEntityEmbeddingsToMemory();
+    if (!skipEmbeddingLoad) {
+      loadEntityEmbeddingsToMemory();
+    }
   }
   setWikilinkConfig(ctx.flywheelConfig);
   setCooccurrenceIndex(ctx.cooccurrenceIndex);
@@ -27714,6 +27758,7 @@ async function bootVault(ctx, startTime) {
   if (sd) {
     try {
       const files = await scanVault(vp);
+      startupScanFiles = files;
       const noteCount = files.length;
       serverLog("index", `[${ctx.name}] Found ${noteCount} markdown files`);
       const newestMtime = files.reduce((max, f) => f.modified > max ? f.modified : max, /* @__PURE__ */ new Date(0));
@@ -27799,13 +27844,13 @@ async function main() {
     const primaryCtx2 = await initializeVault(vaultConfigs[0].name, vaultConfigs[0].path);
     vaultRegistry.addContext(primaryCtx2);
     stateDb = primaryCtx2.stateDb;
-    activateVault(primaryCtx2);
+    activateVault(primaryCtx2, true);
   } else {
     vaultRegistry = new VaultRegistry("default");
     const ctx = await initializeVault("default", vaultPath);
     vaultRegistry.addContext(ctx);
     stateDb = ctx.stateDb;
-    activateVault(ctx);
+    activateVault(ctx, true);
   }
   await initToolRouting();
   if (stateDb) {
@@ -27993,37 +28038,11 @@ async function updateEntitiesInStateDb(vp, sd) {
     serverLog("index", `Failed to update entities in StateDb: ${e instanceof Error ? e.message : e}`, "error");
   }
 }
-async function buildStartupCatchupBatch(vaultPath2, sinceMs) {
-  const events = [];
-  async function scanDir(dir) {
-    let entries;
-    try {
-      entries = await fs34.readdir(dir, { withFileTypes: true });
-    } catch {
-      return;
-    }
-    for (const entry of entries) {
-      const fullPath = path38.join(dir, entry.name);
-      if (entry.isDirectory()) {
-        if (entry.name.startsWith(".") || entry.name === "node_modules") continue;
-        await scanDir(fullPath);
-      } else if (entry.isFile() && entry.name.endsWith(".md")) {
-        try {
-          const stat5 = await fs34.stat(fullPath);
-          if (stat5.mtimeMs > sinceMs) {
-            events.push({
-              type: "upsert",
-              path: path38.relative(vaultPath2, fullPath),
-              originalEvents: []
-            });
-          }
-        } catch {
-        }
-      }
-    }
+function buildStartupCatchupBatch(vaultPath2, sinceMs, preScannedFiles) {
+  if (preScannedFiles) {
+    return preScannedFiles.filter((f) => f.modified.getTime() > sinceMs).map((f) => ({ type: "upsert", path: f.path, originalEvents: [] }));
   }
-  await scanDir(vaultPath2);
-  return events;
+  return [];
 }
 var lastPurgeAt = Date.now();
 function runPeriodicMaintenance(db4) {
@@ -28205,7 +28224,7 @@ async function runPostIndexWork(ctx) {
           if (attempt < MAX_BUILD_RETRIES) {
             const delay = 1e4;
             serverLog("semantic", `Build failed (attempt ${attempt}/${MAX_BUILD_RETRIES}): ${msg}. Retrying in ${delay / 1e3}s...`, "error");
-            await new Promise((resolve2) => setTimeout(resolve2, delay));
+            await new Promise((resolve3) => setTimeout(resolve3, delay));
             return attemptBuild(attempt + 1);
           }
           serverLog("semantic", `Embeddings build failed after ${MAX_BUILD_RETRIES} attempts: ${msg}`, "error");
@@ -28261,8 +28280,8 @@ async function runPostIndexWork(ctx) {
           }
         } catch {
           try {
-            const dir = path38.dirname(rawPath);
-            const base = path38.basename(rawPath);
+            const dir = path39.dirname(rawPath);
+            const base = path39.basename(rawPath);
             const resolvedDir = realpathSync(dir).replace(/\\/g, "/");
             for (const prefix of vaultPrefixes) {
               if (resolvedDir.startsWith(prefix + "/") || resolvedDir === prefix) {
@@ -28294,7 +28313,7 @@ async function runPostIndexWork(ctx) {
           continue;
         }
         try {
-          const content = await fs34.readFile(path38.join(vp, event.path), "utf-8");
+          const content = await fs35.readFile(path39.join(vp, event.path), "utf-8");
           const hash = createHash4("sha256").update(content).digest("hex").slice(0, 16);
           if (lastContentHashes.get(event.path) === hash) {
             serverLog("watcher", `Hash unchanged, skipping: ${event.path}`);
@@ -28403,7 +28422,7 @@ async function runPostIndexWork(ctx) {
     if (sd) {
       const lastPipelineEvent = getRecentPipelineEvent(sd);
       if (lastPipelineEvent) {
-        const catchupEvents = await buildStartupCatchupBatch(vp, lastPipelineEvent.timestamp);
+        const catchupEvents = buildStartupCatchupBatch(vp, lastPipelineEvent.timestamp, startupScanFiles);
         if (catchupEvents.length > 0) {
           console.error(`[Flywheel] Startup catch-up: ${catchupEvents.length} file(s) modified while offline`);
           await handleBatch({ events: catchupEvents, renames: [], timestamp: Date.now() });
@@ -28423,6 +28442,7 @@ async function runPostIndexWork(ctx) {
     watcher.start();
     serverLog("watcher", "File watcher started");
   }
+  startupScanFiles = null;
   if (process.env.FLYWHEEL_WATCH !== "false") {
     startSweepTimer(() => ctx.vaultIndex, void 0, () => {
       if (sd) runPeriodicMaintenance(sd);