@velvetmonkey/flywheel-memory 2.1.3 → 2.2.0

package/dist/index.js

@@ -108,34 +108,109 @@ var init_vault = __esm({
 function levenshteinDistance(a, b) {
   if (a.length === 0) return b.length;
   if (b.length === 0) return a.length;
-  const matrix = [];
-  for (let i = 0; i <= b.length; i++) {
-    matrix[i] = [i];
-  }
-  for (let j = 0; j <= a.length; j++) {
-    matrix[0][j] = j;
+  if (a.length > b.length) {
+    const t = a;
+    a = b;
+    b = t;
   }
+  const row = new Uint16Array(a.length + 1);
+  for (let j = 0; j <= a.length; j++) row[j] = j;
   for (let i = 1; i <= b.length; i++) {
+    let prev = row[0];
+    row[0] = i;
     for (let j = 1; j <= a.length; j++) {
+      const cur = row[j];
       if (b.charAt(i - 1) === a.charAt(j - 1)) {
-        matrix[i][j] = matrix[i - 1][j - 1];
+        row[j] = prev;
       } else {
-        matrix[i][j] = Math.min(
-          matrix[i - 1][j - 1] + 1,
-          // substitution
-          matrix[i][j - 1] + 1,
-          // insertion
-          matrix[i - 1][j] + 1
-          // deletion
-        );
+        row[j] = 1 + Math.min(prev, row[j - 1], row[j]);
+      }
+      prev = cur;
+    }
+  }
+  return row[a.length];
+}
+function normalizeFuzzyTerm(term) {
+  return term.toLowerCase().replace(/[^a-z0-9]/g, "");
+}
+function fuzzySimilarity(a, b) {
+  const maxLen = Math.max(a.length, b.length);
+  if (maxLen === 0) return 1;
+  return 1 - levenshteinDistance(a, b) / maxLen;
+}
+function bestFuzzyMatch(token, candidates, threshold = FUZZY_THRESHOLD) {
+  if (token.length < MIN_FUZZY_LENGTH) return 0;
+  let best = 0;
+  for (const candidate of candidates) {
+    if (candidate.length < MIN_FUZZY_LENGTH) continue;
+    if (Math.abs(token.length - candidate.length) > MAX_LENGTH_DELTA) continue;
+    const sim = fuzzySimilarity(token, candidate);
+    if (sim >= threshold && sim > best) {
+      best = sim;
+    }
+  }
+  return best;
+}
+function buildCollapsedContentTerms(tokens) {
+  const terms = /* @__PURE__ */ new Set();
+  for (let i = 0; i < tokens.length; i++) {
+    let collapsed = tokens[i];
+    terms.add(collapsed);
+    if (i + 1 < tokens.length) {
+      collapsed += tokens[i + 1];
+      terms.add(collapsed);
+    }
+    if (i + 2 < tokens.length) {
+      collapsed += tokens[i + 2];
+      terms.add(collapsed);
+    }
+  }
+  return terms;
+}
+function scoreFuzzyMatch(entityTokens, unmatchedTokenIndices, contentTokens, collapsedContentTerms, entityName, fuzzyMatchBonus, tokenIdfFn, tokenFuzzyCache) {
+  if (entityName.length <= 3 || entityName === entityName.toUpperCase()) {
+    return { fuzzyScore: 0, fuzzyMatchedWords: 0, isWholeTermMatch: false };
+  }
+  let fuzzyScore = 0;
+  let fuzzyMatchedWords = 0;
+  for (const idx of unmatchedTokenIndices) {
+    const token = entityTokens[idx];
+    if (token.length < MIN_FUZZY_LENGTH) continue;
+    let sim;
+    if (tokenFuzzyCache.has(token)) {
+      sim = tokenFuzzyCache.get(token);
+    } else {
+      sim = bestFuzzyMatch(token, contentTokens, FUZZY_THRESHOLD);
+      tokenFuzzyCache.set(token, sim);
+    }
+    if (sim > 0) {
+      const idf = tokenIdfFn(token);
+      fuzzyScore += fuzzyMatchBonus * idf * sim;
+      fuzzyMatchedWords++;
+    }
+  }
+  if (fuzzyMatchedWords === 0 && unmatchedTokenIndices.length === entityTokens.length) {
+    const collapsedEntity = normalizeFuzzyTerm(entityName);
+    if (collapsedEntity.length >= MIN_FUZZY_LENGTH) {
+      const sim = bestFuzzyMatch(collapsedEntity, collapsedContentTerms, FUZZY_THRESHOLD);
+      if (sim > 0) {
+        let idfSum = 0;
+        for (const token of entityTokens) idfSum += tokenIdfFn(token);
+        fuzzyScore = fuzzyMatchBonus * sim * idfSum;
+        fuzzyMatchedWords = entityTokens.length;
+        return { fuzzyScore: Math.round(fuzzyScore * 10) / 10, fuzzyMatchedWords, isWholeTermMatch: true };
       }
     }
   }
-  return matrix[b.length][a.length];
+  return { fuzzyScore: Math.round(fuzzyScore * 10) / 10, fuzzyMatchedWords, isWholeTermMatch: false };
 }
+var MIN_FUZZY_LENGTH, FUZZY_THRESHOLD, MAX_LENGTH_DELTA;
 var init_levenshtein = __esm({
   "src/core/shared/levenshtein.ts"() {
     "use strict";
+    MIN_FUZZY_LENGTH = 4;
+    FUZZY_THRESHOLD = 0.8;
+    MAX_LENGTH_DELTA = 2;
   }
 });
 
@@ -482,7 +557,7 @@ async function semanticSearch(query, limit = 10) {
   if (!db4) {
     throw new Error("Embeddings database not initialized. Call setEmbeddingsDatabase() first.");
   }
-  const queryEmbedding = await embedText(query);
+  const queryEmbedding = await embedTextCached(query);
   const rows = db4.prepare("SELECT path, embedding FROM note_embeddings").all();
   const scored = [];
   for (const row of rows) {
@@ -858,6 +933,137 @@ function hasEntityEmbeddingsIndex() {
 function getEntityEmbeddingsMap() {
   return entityEmbeddingsMap;
 }
+function getInferredCategory(entityName) {
+  return inferredCategoriesMap.get(entityName);
+}
+function ensureInferredCategoriesTable() {
+  const db4 = getDb();
+  if (!db4) return;
+  db4.exec(`
+    CREATE TABLE IF NOT EXISTS inferred_categories (
+      entity_name TEXT PRIMARY KEY,
+      category TEXT NOT NULL,
+      confidence REAL NOT NULL,
+      source TEXT NOT NULL DEFAULT 'centroid',
+      updated_at INTEGER NOT NULL
+    )
+  `);
+}
+function loadInferredCategories() {
+  const db4 = getDb();
+  inferredCategoriesMap = /* @__PURE__ */ new Map();
+  if (!db4) return inferredCategoriesMap;
+  try {
+    ensureInferredCategoriesTable();
+    const rows = db4.prepare(`
+      SELECT entity_name, category, confidence
+      FROM inferred_categories
+      WHERE source = 'centroid'
+    `).all();
+    for (const row of rows) {
+      inferredCategoriesMap.set(row.entity_name, {
+        entityName: row.entity_name,
+        category: row.category,
+        confidence: row.confidence
+      });
+    }
+  } catch {
+    inferredCategoriesMap = /* @__PURE__ */ new Map();
+  }
+  return inferredCategoriesMap;
+}
+function saveInferredCategories(categories) {
+  const db4 = getDb();
+  inferredCategoriesMap = new Map(categories);
+  if (!db4) return;
+  ensureInferredCategoriesTable();
+  const now = Date.now();
+  const clearStmt = db4.prepare(`DELETE FROM inferred_categories WHERE source = 'centroid'`);
+  const insertStmt = db4.prepare(`
+    INSERT OR REPLACE INTO inferred_categories
+      (entity_name, category, confidence, source, updated_at)
+    VALUES (?, ?, ?, 'centroid', ?)
+  `);
+  const txn = db4.transaction(() => {
+    clearStmt.run();
+    for (const inferred of categories.values()) {
+      insertStmt.run(
+        inferred.entityName,
+        inferred.category,
+        inferred.confidence,
+        now
+      );
+    }
+  });
+  txn();
+}
+function normalizeVector(vector) {
+  let magnitude = 0;
+  for (let i = 0; i < vector.length; i++) {
+    magnitude += vector[i] * vector[i];
+  }
+  if (magnitude === 0) return vector;
+  const normalized = new Float32Array(vector.length);
+  const scale = 1 / Math.sqrt(magnitude);
+  for (let i = 0; i < vector.length; i++) {
+    normalized[i] = vector[i] * scale;
+  }
+  return normalized;
+}
+function classifyUncategorizedEntities(entitiesWithTypes, threshold = 0.45) {
+  const embeddings = getEmbMap();
+  const categoryEmbeddings = /* @__PURE__ */ new Map();
+  for (const { entity, category } of entitiesWithTypes) {
+    if (category === "other") continue;
+    const embedding = embeddings.get(entity.name);
+    if (!embedding) continue;
+    const existing = categoryEmbeddings.get(category) ?? [];
+    existing.push(embedding);
+    categoryEmbeddings.set(category, existing);
+  }
+  const centroids = /* @__PURE__ */ new Map();
+  for (const [category, vectors] of categoryEmbeddings.entries()) {
+    if (vectors.length < 3) continue;
+    const centroid = new Float32Array(vectors[0].length);
+    for (const vector of vectors) {
+      for (let i = 0; i < vector.length; i++) {
+        centroid[i] += vector[i];
+      }
+    }
+    for (let i = 0; i < centroid.length; i++) {
+      centroid[i] /= vectors.length;
+    }
+    centroids.set(category, normalizeVector(centroid));
+  }
+  const inferred = /* @__PURE__ */ new Map();
+  if (centroids.size === 0) {
+    inferredCategoriesMap = inferred;
+    return inferred;
+  }
+  for (const { entity, category } of entitiesWithTypes) {
+    if (category !== "other") continue;
+    const embedding = embeddings.get(entity.name);
+    if (!embedding) continue;
+    let bestCategory = null;
+    let bestSimilarity = -1;
+    for (const [candidateCategory, centroid] of centroids.entries()) {
+      const similarity = cosineSimilarity(embedding, centroid);
+      if (similarity > bestSimilarity) {
+        bestSimilarity = similarity;
+        bestCategory = candidateCategory;
+      }
+    }
+    if (bestCategory && bestSimilarity >= threshold) {
+      inferred.set(entity.name, {
+        entityName: entity.name,
+        category: bestCategory,
+        confidence: Math.round(bestSimilarity * 1e3) / 1e3
+      });
+    }
+  }
+  inferredCategoriesMap = inferred;
+  return inferred;
+}
 function loadEntityEmbeddingsToMemory() {
   const db4 = getDb();
   if (!db4) return;
@@ -877,6 +1083,7 @@ function loadEntityEmbeddingsToMemory() {
     }
   } catch {
   }
+  loadInferredCategories();
 }
 function loadNoteEmbeddingsForPaths(paths) {
   const db4 = getDb();
@@ -909,7 +1116,7 @@ function getEntityEmbeddingsCount() {
     return 0;
   }
 }
-var MODEL_REGISTRY, DEFAULT_MODEL, activeModelConfig, MAX_FILE_SIZE2, db, pipeline, initPromise, embeddingsBuilding, embeddingCache, EMBEDDING_CACHE_MAX, entityEmbeddingsMap, EMBEDDING_TEXT_VERSION;
+var MODEL_REGISTRY, DEFAULT_MODEL, activeModelConfig, MAX_FILE_SIZE2, db, pipeline, initPromise, embeddingsBuilding, embeddingCache, EMBEDDING_CACHE_MAX, entityEmbeddingsMap, inferredCategoriesMap, EMBEDDING_TEXT_VERSION;
 var init_embeddings = __esm({
   "src/core/read/embeddings.ts"() {
     "use strict";
@@ -932,6 +1139,7 @@ var init_embeddings = __esm({
     embeddingCache = /* @__PURE__ */ new Map();
     EMBEDDING_CACHE_MAX = 500;
     entityEmbeddingsMap = /* @__PURE__ */ new Map();
+    inferredCategoriesMap = /* @__PURE__ */ new Map();
     EMBEDDING_TEXT_VERSION = 2;
   }
 });
@@ -1470,6 +1678,14 @@ function tokenIdf(token, coocIndex) {
   const rawIdf = Math.log((N + 1) / (df + 1));
   return Math.max(0.5, Math.min(2.5, rawIdf));
 }
+function entityRarity(entityName, coocIndex) {
+  if (!coocIndex || coocIndex.totalNotesScanned === 0) return 1;
+  const df = coocIndex.documentFrequency.get(entityName);
+  if (df === void 0) return 1.3;
+  const N = coocIndex.totalNotesScanned;
+  const rarity = Math.log((N + 1) / (df + 1)) / Math.log(N + 1);
+  return Math.max(0.7, Math.min(1.8, 0.7 + rarity * 1.1));
+}
 function serializeCooccurrenceIndex(index) {
   const serialized = {};
   for (const [entity, assocs] of Object.entries(index.associations)) {
@@ -1546,9 +1762,16 @@ var init_cooccurrence = __esm({
 });
 
 // src/core/write/wikilinkFeedback.ts
-function computePosteriorMean(weightedCorrect, weightedFp) {
-  const alpha = PRIOR_ALPHA + weightedCorrect;
-  const beta_ = PRIOR_BETA + weightedFp;
+function isAiConfigEntity(entityName) {
+  const lower = entityName.toLowerCase();
+  return AI_CONFIG_PATTERNS.some((p) => lower === p || lower.endsWith("/" + p));
+}
+function getEffectiveAlpha(entity) {
+  return isAiConfigEntity(entity) ? AI_CONFIG_PRIOR_ALPHA : PRIOR_ALPHA;
+}
+function computePosteriorMean(weightedCorrect, weightedFp, priorAlpha = PRIOR_ALPHA, priorBeta = PRIOR_BETA) {
+  const alpha = priorAlpha + weightedCorrect;
+  const beta_ = priorBeta + weightedFp;
   return alpha / (alpha + beta_);
 }
 function recordFeedback(stateDb2, entity, context, notePath, correct, confidence = 1, matchedTerm) {
@@ -1708,8 +1931,9 @@ function updateSuppressionList(stateDb2, now) {
        WHERE datetime(updated_at, '+' || ? || ' days') <= datetime('now')`
     ).run(SUPPRESSION_TTL_DAYS);
     for (const stat5 of weightedStats) {
-      const posteriorMean = computePosteriorMean(stat5.weightedCorrect, stat5.weightedFp);
-      const totalObs = PRIOR_ALPHA + stat5.weightedCorrect + PRIOR_BETA + stat5.weightedFp;
+      const effectiveAlpha = getEffectiveAlpha(stat5.entity);
+      const posteriorMean = computePosteriorMean(stat5.weightedCorrect, stat5.weightedFp, effectiveAlpha);
+      const totalObs = effectiveAlpha + stat5.weightedCorrect + PRIOR_BETA + stat5.weightedFp;
       if (totalObs < SUPPRESSION_MIN_OBSERVATIONS) {
         continue;
       }
@@ -1748,8 +1972,9 @@ function isSuppressed(stateDb2, entity, folder, now) {
     const stats = getWeightedFolderStats(stateDb2, entity, folder, now);
     if (stats.rawTotal >= FOLDER_SUPPRESSION_MIN_COUNT) {
       const folderCorrect = stats.weightedTotal - stats.weightedFp;
-      const posteriorMean = computePosteriorMean(folderCorrect, stats.weightedFp);
-      const totalObs = PRIOR_ALPHA + folderCorrect + PRIOR_BETA + stats.weightedFp;
+      const effectiveAlpha = getEffectiveAlpha(entity);
+      const posteriorMean = computePosteriorMean(folderCorrect, stats.weightedFp, effectiveAlpha);
+      const totalObs = effectiveAlpha + folderCorrect + PRIOR_BETA + stats.weightedFp;
       if (totalObs >= SUPPRESSION_MIN_OBSERVATIONS && posteriorMean < SUPPRESSION_POSTERIOR_THRESHOLD) {
         return true;
       }
@@ -1819,12 +2044,17 @@ function getAllSuppressionPenalties(stateDb2, now) {
   const penalties = /* @__PURE__ */ new Map();
   const weightedStats = getWeightedEntityStats(stateDb2, now);
   for (const stat5 of weightedStats) {
-    const posteriorMean = computePosteriorMean(stat5.weightedCorrect, stat5.weightedFp);
-    const totalObs = PRIOR_ALPHA + stat5.weightedCorrect + PRIOR_BETA + stat5.weightedFp;
-    if (totalObs >= SUPPRESSION_MIN_OBSERVATIONS && posteriorMean < SUPPRESSION_POSTERIOR_THRESHOLD) {
-      const penalty = Math.round(MAX_SUPPRESSION_PENALTY * (1 - posteriorMean / SUPPRESSION_POSTERIOR_THRESHOLD));
-      if (penalty < 0) {
-        penalties.set(stat5.entity, penalty);
+    const effectiveAlpha = getEffectiveAlpha(stat5.entity);
+    const posteriorMean = computePosteriorMean(stat5.weightedCorrect, stat5.weightedFp, effectiveAlpha);
+    const totalObs = effectiveAlpha + stat5.weightedCorrect + PRIOR_BETA + stat5.weightedFp;
+    if (totalObs >= SUPPRESSION_MIN_OBSERVATIONS) {
+      if (posteriorMean < SUPPRESSION_POSTERIOR_THRESHOLD) {
+        const penalty = Math.round(MAX_SUPPRESSION_PENALTY * (1 - posteriorMean / SUPPRESSION_POSTERIOR_THRESHOLD));
+        if (penalty < 0) {
+          penalties.set(stat5.entity, penalty);
+        }
+      } else if (posteriorMean < SOFT_PENALTY_THRESHOLD) {
+        penalties.set(stat5.entity, SOFT_PENALTY);
       }
     }
   }
@@ -2106,7 +2336,9 @@ function getLayerContributionTimeseries(stateDb2, granularity = "day", daysBack
     const breakdown = JSON.parse(row.breakdown_json);
     const layerMap = {
       contentMatch: breakdown.contentMatch,
+      fuzzyMatch: breakdown.fuzzyMatch ?? 0,
       cooccurrenceBoost: breakdown.cooccurrenceBoost,
+      rarityAdjustment: breakdown.rarityAdjustment ?? 0,
       typeBoost: breakdown.typeBoost,
       contextBoost: breakdown.contextBoost,
       recencyBoost: breakdown.recencyBoost,
@@ -2140,7 +2372,9 @@ function getExtendedDashboardData(stateDb2) {
   const layerSums = {};
   const LAYER_NAMES = [
     "contentMatch",
+    "fuzzyMatch",
     "cooccurrenceBoost",
+    "rarityAdjustment",
     "typeBoost",
     "contextBoost",
     "recencyBoost",
@@ -2214,16 +2448,31 @@ function getExtendedDashboardData(stateDb2) {
     suppressionChanges
   };
 }
-var PRIOR_ALPHA, PRIOR_BETA, SUPPRESSION_POSTERIOR_THRESHOLD, SUPPRESSION_MIN_OBSERVATIONS, MAX_SUPPRESSION_PENALTY, FEEDBACK_BOOST_MIN_SAMPLES, FOLDER_SUPPRESSION_MIN_COUNT, SUPPRESSION_TTL_DAYS, FEEDBACK_DECAY_HALF_LIFE_DAYS, FEEDBACK_DECAY_LAMBDA, FEEDBACK_BOOST_TIERS, TIER_LABELS;
+var PRIOR_ALPHA, PRIOR_BETA, SUPPRESSION_POSTERIOR_THRESHOLD, SUPPRESSION_MIN_OBSERVATIONS, MAX_SUPPRESSION_PENALTY, SOFT_PENALTY_THRESHOLD, SOFT_PENALTY, AI_CONFIG_PATTERNS, AI_CONFIG_PRIOR_ALPHA, FEEDBACK_BOOST_MIN_SAMPLES, FOLDER_SUPPRESSION_MIN_COUNT, SUPPRESSION_TTL_DAYS, FEEDBACK_DECAY_HALF_LIFE_DAYS, FEEDBACK_DECAY_LAMBDA, FEEDBACK_BOOST_TIERS, TIER_LABELS;
 var init_wikilinkFeedback = __esm({
   "src/core/write/wikilinkFeedback.ts"() {
     "use strict";
     init_wikilinks();
-    PRIOR_ALPHA = 8;
+    PRIOR_ALPHA = 4;
     PRIOR_BETA = 1;
-    SUPPRESSION_POSTERIOR_THRESHOLD = 0.35;
-    SUPPRESSION_MIN_OBSERVATIONS = 20;
+    SUPPRESSION_POSTERIOR_THRESHOLD = 0.45;
+    SUPPRESSION_MIN_OBSERVATIONS = 15;
     MAX_SUPPRESSION_PENALTY = -15;
+    SOFT_PENALTY_THRESHOLD = 0.55;
+    SOFT_PENALTY = -5;
+    AI_CONFIG_PATTERNS = [
+      "claude.md",
+      "cursor.md",
+      ".cursorrules",
+      "copilot-instructions.md",
+      "agents.md",
+      ".windsurfrules",
+      ".aiderignore",
+      ".aider.conf.yml",
+      "cline_docs",
+      "codex.md"
+    ];
+    AI_CONFIG_PRIOR_ALPHA = 2;
     FEEDBACK_BOOST_MIN_SAMPLES = 3;
     FOLDER_SUPPRESSION_MIN_COUNT = 5;
     SUPPRESSION_TTL_DAYS = 30;
@@ -3001,7 +3250,9 @@ import {
   getEntityByName,
   getEntitiesByAlias,
   searchEntities as searchEntitiesDb,
-  STOPWORDS_EN as STOPWORDS_EN2
+  STOPWORDS_EN as STOPWORDS_EN2,
+  IMPLICIT_EXCLUDE_WORDS,
+  COMMON_ENGLISH_WORDS
 } from "@velvetmonkey/vault-core";
 import path11 from "path";
 import * as fs7 from "fs/promises";
@@ -3362,12 +3613,33 @@ function isLikelyArticleTitle(name) {
   }
   return false;
 }
-function getTypeBoost(category, customCategories) {
+function getTypeBoost(category, customCategories, entityName) {
   if (customCategories?.[category]?.type_boost != null) {
     return customCategories[category].type_boost;
   }
+  if (category === "other" && entityName) {
+    const inferred = getInferredCategory(entityName);
+    if (inferred) {
+      return TYPE_BOOST[inferred.category] || 0;
+    }
+  }
   return TYPE_BOOST[category] || 0;
 }
+function isCommonWordFalsePositive(entityName, rawContent, category) {
+  const nameTokens = tokenize(entityName);
+  if (nameTokens.length !== 1) return false;
+  const EXEMPT_CATEGORIES = /* @__PURE__ */ new Set(["people", "animals", "projects", "organizations"]);
+  if (EXEMPT_CATEGORIES.has(category)) return false;
+  const lowerName = entityName.toLowerCase();
+  if (!IMPLICIT_EXCLUDE_WORDS.has(lowerName) && !COMMON_ENGLISH_WORDS.has(lowerName)) return false;
+  return !rawContent.includes(entityName);
+}
+function capScoreWithoutContentRelevance(score, contentRelevance, config) {
+  if (contentRelevance < config.contentRelevanceFloor) {
+    return Math.min(score, config.noRelevanceCap);
+  }
+  return score;
+}
 function getCrossFolderBoost(entityPath, notePath) {
   if (!entityPath || !notePath) return 0;
   const entityParts = entityPath.split("/");
@@ -3412,64 +3684,107 @@ function getAdaptiveMinScore(contentLength, baseScore) {
   }
   return baseScore;
 }
-function scoreNameAgainstContent(name, contentTokens, contentStems, config, coocIndex) {
+function scoreNameAgainstContent(name, contentTokens, contentStems, config, coocIndex, disableExact, disableStem) {
   const nameTokens = tokenize(name);
   if (nameTokens.length === 0) {
-    return { score: 0, matchedWords: 0, exactMatches: 0, totalTokens: 0 };
+    return { exactScore: 0, stemScore: 0, lexicalScore: 0, matchedWords: 0, exactMatches: 0, totalTokens: 0, nameTokens: [], unmatchedTokenIndices: [] };
   }
   const nameStems = nameTokens.map((t) => stem(t));
-  let score = 0;
+  let exactScore = 0;
+  let stemScore = 0;
   let matchedWords = 0;
   let exactMatches = 0;
+  const unmatchedTokenIndices = [];
   for (let i = 0; i < nameTokens.length; i++) {
     const token = nameTokens[i];
     const nameStem = nameStems[i];
     const idfWeight = coocIndex ? tokenIdf(token, coocIndex) : 1;
-    if (contentTokens.has(token)) {
-      score += config.exactMatchBonus * idfWeight;
+    if (!disableExact && contentTokens.has(token)) {
+      exactScore += config.exactMatchBonus * idfWeight;
       matchedWords++;
       exactMatches++;
-    } else if (contentStems.has(nameStem)) {
-      score += config.stemMatchBonus * idfWeight;
+    } else if (!disableStem && contentStems.has(nameStem)) {
+      stemScore += config.stemMatchBonus * idfWeight;
       matchedWords++;
+    } else {
+      unmatchedTokenIndices.push(i);
     }
   }
-  score = Math.round(score * 10) / 10;
-  return { score, matchedWords, exactMatches, totalTokens: nameTokens.length };
+  const lexicalScore = Math.round((exactScore + stemScore) * 10) / 10;
+  return { exactScore, stemScore, lexicalScore, matchedWords, exactMatches, totalTokens: nameTokens.length, nameTokens, unmatchedTokenIndices };
 }
-function scoreEntity(entity, contentTokens, contentStems, config, coocIndex) {
+function scoreEntity(entity, contentTokens, contentStems, collapsedContentTerms, config, disabled, coocIndex, tokenFuzzyCache) {
+  const zero = { contentMatch: 0, fuzzyMatch: 0, totalLexical: 0, matchedWords: 0, exactMatches: 0, totalTokens: 0 };
   const entityName = getEntityName2(entity);
   const aliases = getEntityAliases(entity);
-  const nameResult = scoreNameAgainstContent(entityName, contentTokens, contentStems, config, coocIndex);
-  let bestAliasResult = { score: 0, matchedWords: 0, exactMatches: 0, totalTokens: 0 };
+  const disableExact = disabled.has("exact_match");
+  const disableStem = disabled.has("stem_match");
+  const disableFuzzy = disabled.has("fuzzy_match");
+  const cache = tokenFuzzyCache ?? /* @__PURE__ */ new Map();
+  const idfFn = (token) => coocIndex ? tokenIdf(token, coocIndex) : 1;
+  const nameResult = scoreNameAgainstContent(entityName, contentTokens, contentStems, config, coocIndex, disableExact, disableStem);
+  let bestAliasResult = { exactScore: 0, stemScore: 0, lexicalScore: 0, matchedWords: 0, exactMatches: 0, totalTokens: 0, nameTokens: [], unmatchedTokenIndices: [] };
   for (const alias of aliases) {
-    const aliasResult = scoreNameAgainstContent(alias, contentTokens, contentStems, config, coocIndex);
-    if (aliasResult.score > bestAliasResult.score) {
+    const aliasResult = scoreNameAgainstContent(alias, contentTokens, contentStems, config, coocIndex, disableExact, disableStem);
+    if (aliasResult.lexicalScore > bestAliasResult.lexicalScore) {
       bestAliasResult = aliasResult;
     }
   }
-  const bestResult = nameResult.score >= bestAliasResult.score ? nameResult : bestAliasResult;
-  let { score, matchedWords, exactMatches, totalTokens } = bestResult;
-  if (totalTokens === 0) return 0;
-  for (const alias of aliases) {
-    const aliasLower = alias.toLowerCase();
-    if (aliasLower.length >= 3 && !/\s/.test(aliasLower) && contentTokens.has(aliasLower)) {
-      score += FULL_ALIAS_MATCH_BONUS;
-      break;
+  const bestResult = nameResult.lexicalScore >= bestAliasResult.lexicalScore ? nameResult : bestAliasResult;
+  let { lexicalScore, matchedWords, exactMatches, totalTokens, nameTokens, unmatchedTokenIndices } = bestResult;
+  const fuzzyTargetName = nameResult.lexicalScore >= bestAliasResult.lexicalScore ? entityName : aliases[0] ?? entityName;
+  if (totalTokens === 0) return zero;
+  if (!disableExact) {
+    for (const alias of aliases) {
+      const aliasLower = alias.toLowerCase();
+      if (aliasLower.length >= 3 && !/\s/.test(aliasLower) && contentTokens.has(aliasLower)) {
+        lexicalScore += FULL_ALIAS_MATCH_BONUS;
+        break;
+      }
+    }
+  }
+  let fuzzyScore = 0;
+  let fuzzyMatchedWords = 0;
+  if (!disableFuzzy && unmatchedTokenIndices.length > 0) {
+    const fuzzyResult = scoreFuzzyMatch(
+      nameTokens,
+      unmatchedTokenIndices,
+      contentTokens,
+      collapsedContentTerms,
+      fuzzyTargetName,
+      config.fuzzyMatchBonus,
+      idfFn,
+      cache
+    );
+    fuzzyScore = fuzzyResult.fuzzyScore;
+    fuzzyMatchedWords = fuzzyResult.fuzzyMatchedWords;
+    if (fuzzyResult.isWholeTermMatch) {
+      matchedWords = totalTokens;
+    } else {
+      matchedWords += fuzzyMatchedWords;
     }
   }
   if (totalTokens > 1) {
     const matchRatio = matchedWords / totalTokens;
     if (matchRatio < config.minMatchRatio) {
-      return 0;
+      return zero;
     }
   }
   if (config.requireMultipleMatches && totalTokens === 1) {
-    if (exactMatches === 0) {
-      return 0;
+    if (exactMatches === 0 && fuzzyMatchedWords === 0) {
+      return zero;
     }
   }
-  return score;
+  const contentMatch = Math.round(lexicalScore * 10) / 10;
+  const fuzzyMatch = Math.round(fuzzyScore * 10) / 10;
+  return {
+    contentMatch,
+    fuzzyMatch,
+    totalLexical: Math.round((contentMatch + fuzzyMatch) * 10) / 10,
+    matchedWords,
+    exactMatches,
+    totalTokens
+  };
 }
 function getEdgeWeightBoostScore(entityName, map) {
   const avgWeight = map.get(entityName.toLowerCase());
@@ -3517,6 +3832,9 @@ async function suggestRelatedLinks(content, options = {}) {
   if (contentTokens.size === 0) {
     return emptyResult;
   }
+  const orderedContentTokens = [...rawTokens].filter((token) => token.length >= config.minWordLength && !STOPWORDS_EN2.has(token)).map(normalizeFuzzyTerm).filter((token) => token.length > 0);
+  const collapsedContentTerms = disabled.has("fuzzy_match") ? /* @__PURE__ */ new Set() : buildCollapsedContentTerms(orderedContentTokens);
+  const tokenFuzzyCache = /* @__PURE__ */ new Map();
   const linkedEntities = excludeLinked ? extractLinkedEntities(content) : /* @__PURE__ */ new Set();
   const noteFolder = notePath ? notePath.split("/")[0] : void 0;
   const stateDb2 = getWriteStateDb();
@@ -3526,10 +3844,11 @@ async function suggestRelatedLinks(content, options = {}) {
   const edgeWeightMap = stateDb2 ? getEntityEdgeWeightMap(stateDb2) : /* @__PURE__ */ new Map();
   const scoredEntities = [];
   const directlyMatchedEntities = /* @__PURE__ */ new Set();
-  const entitiesWithContentMatch = /* @__PURE__ */ new Set();
+  const entitiesWithAnyScoringPath = /* @__PURE__ */ new Set();
   for (const { entity, category } of entitiesWithTypes) {
     const entityName = entity.name;
     if (!entityName) continue;
+    if (isCommonWordFalsePositive(entityName, content, category)) continue;
     if (!disabled.has("length_filter") && entityName.length > MAX_ENTITY_LENGTH) {
       continue;
     }
@@ -3543,12 +3862,23 @@ async function suggestRelatedLinks(content, options = {}) {
       const paths = correctedPairs.get(entityName.toLowerCase());
       if (paths.has(notePath)) continue;
     }
-    const contentScore = disabled.has("exact_match") && disabled.has("stem_match") ? 0 : scoreEntity(entity, contentTokens, contentStems, config, cooccurrenceIndex);
-    let score = contentScore;
-    if (contentScore > 0) {
-      entitiesWithContentMatch.add(entityName);
+    const entityScore = disabled.has("exact_match") && disabled.has("stem_match") && disabled.has("fuzzy_match") ? { contentMatch: 0, fuzzyMatch: 0, totalLexical: 0, matchedWords: 0, exactMatches: 0, totalTokens: 0 } : scoreEntity(entity, contentTokens, contentStems, collapsedContentTerms, config, disabled, cooccurrenceIndex, tokenFuzzyCache);
+    const contentScore = entityScore.contentMatch;
+    const fuzzyMatchScore = entityScore.fuzzyMatch;
+    const hasLexicalEvidence = entityScore.totalLexical > 0;
+    let layerRarityAdjustment = 0;
+    if (hasLexicalEvidence && !disabled.has("rarity")) {
+      const multiplier = entityRarity(entityName, cooccurrenceIndex);
+      if (multiplier > 1) {
+        const raw = entityScore.totalLexical * (multiplier - 1);
+        layerRarityAdjustment = Math.round(Math.min(5, raw) * 10) / 10;
+      }
     }
-    const layerTypeBoost = disabled.has("type_boost") ? 0 : getTypeBoost(category, getConfig()?.custom_categories);
+    let score = entityScore.totalLexical + layerRarityAdjustment;
+    if (hasLexicalEvidence) {
+      entitiesWithAnyScoringPath.add(entityName);
+    }
+    const layerTypeBoost = disabled.has("type_boost") ? 0 : getTypeBoost(category, getConfig()?.custom_categories, entityName);
     score += layerTypeBoost;
     const layerContextBoost = disabled.has("context_boost") ? 0 : contextBoosts[category] || 0;
     score += layerContextBoost;
@@ -3562,12 +3892,13 @@ async function suggestRelatedLinks(content, options = {}) {
     score += layerFeedbackAdj;
     const layerEdgeWeightBoost = disabled.has("edge_weight") ? 0 : getEdgeWeightBoostScore(entityName, edgeWeightMap);
     score += layerEdgeWeightBoost;
-    if (contentScore > 0) {
+    if (hasLexicalEvidence) {
       directlyMatchedEntities.add(entityName);
     }
     const layerSuppressionPenalty = disabled.has("feedback") ? 0 : suppressionPenalties.get(entityName) ?? 0;
     score += layerSuppressionPenalty;
-    if (contentScore > 0 && score >= adaptiveMinScore) {
+    score = capScoreWithoutContentRelevance(score, contentScore + fuzzyMatchScore, config);
+    if (hasLexicalEvidence && score >= adaptiveMinScore) {
       scoredEntities.push({
         name: entityName,
         path: entity.path || "",
@@ -3575,7 +3906,9 @@ async function suggestRelatedLinks(content, options = {}) {
         category,
         breakdown: {
           contentMatch: contentScore,
+          fuzzyMatch: fuzzyMatchScore,
           cooccurrenceBoost: 0,
+          rarityAdjustment: layerRarityAdjustment,
           typeBoost: layerTypeBoost,
           contextBoost: layerContextBoost,
           recencyBoost: layerRecencyBoost,
@@ -3617,6 +3950,7 @@ async function suggestRelatedLinks(content, options = {}) {
     for (const { entity, category } of entitiesWithTypes) {
       const entityName = entity.name;
       if (!entityName) continue;
+      if (isCommonWordFalsePositive(entityName, content, category)) continue;
       if (!disabled.has("length_filter") && entityName.length > MAX_ENTITY_LENGTH) continue;
       if (!disabled.has("article_filter") && isLikelyArticleTitle(entityName)) continue;
       if (linkedEntities.has(entityName.toLowerCase())) continue;
@@ -3628,19 +3962,21 @@ async function suggestRelatedLinks(content, options = {}) {
         if (existing) {
           existing.score += boost;
           existing.breakdown.cooccurrenceBoost += boost;
+          const existingContentRelevance = existing.breakdown.contentMatch + existing.breakdown.fuzzyMatch + (existing.breakdown.semanticBoost ?? 0);
+          existing.score = capScoreWithoutContentRelevance(existing.score, existingContentRelevance, config);
         } else {
           const entityTokens = tokenize(entityName);
           const hasContentOverlap = entityTokens.some(
             (token) => contentTokens.has(token) || contentStems.has(stem(token))
           );
-          const strongCooccurrence = boost >= 3;
+          const strongCooccurrence = boost >= config.minCooccurrenceGate;
           if (!hasContentOverlap && !strongCooccurrence) {
             continue;
           }
           if (hasContentOverlap || strongCooccurrence) {
-            entitiesWithContentMatch.add(entityName);
+            entitiesWithAnyScoringPath.add(entityName);
           }
-          const typeBoost = disabled.has("type_boost") ? 0 : getTypeBoost(category, getConfig()?.custom_categories);
+          const typeBoost = disabled.has("type_boost") ? 0 : getTypeBoost(category, getConfig()?.custom_categories, entityName);
           const contextBoost = disabled.has("context_boost") ? 0 : contextBoosts[category] || 0;
           const recencyBoostVal = hasContentOverlap && !disabled.has("recency") ? recencyIndex ? getRecencyBoost(entityName, recencyIndex) : 0 : 0;
           const rawCrossFolderBoost = disabled.has("cross_folder") ? 0 : notePath && entity.path ? getCrossFolderBoost(entity.path, notePath) : 0;
@@ -3650,7 +3986,9 @@ async function suggestRelatedLinks(content, options = {}) {
           const feedbackAdj = disabled.has("feedback") ? 0 : feedbackBoosts.get(entityName) ?? 0;
           const edgeWeightBoost = disabled.has("edge_weight") ? 0 : getEdgeWeightBoostScore(entityName, edgeWeightMap);
           const suppPenalty = disabled.has("feedback") ? 0 : suppressionPenalties.get(entityName) ?? 0;
-          const totalBoost = boost + typeBoost + contextBoost + recencyBoostVal + crossFolderBoost + hubBoost + feedbackAdj + edgeWeightBoost + suppPenalty;
+          let totalBoost = boost + typeBoost + contextBoost + recencyBoostVal + crossFolderBoost + hubBoost + feedbackAdj + edgeWeightBoost + suppPenalty;
+          const coocContentRelevance = hasContentOverlap ? 5 : 0;
+          totalBoost = capScoreWithoutContentRelevance(totalBoost, coocContentRelevance, config);
           const effectiveMinScore = !hasContentOverlap ? Math.max(adaptiveMinScore, 7) : adaptiveMinScore;
           if (totalBoost >= effectiveMinScore) {
             scoredEntities.push({
@@ -3660,7 +3998,9 @@ async function suggestRelatedLinks(content, options = {}) {
               category,
               breakdown: {
                 contentMatch: 0,
+                fuzzyMatch: 0,
                 cooccurrenceBoost: boost,
+                rarityAdjustment: 0,
                 typeBoost,
                 contextBoost,
                 recencyBoost: recencyBoostVal,
@@ -3688,20 +4028,21 @@ async function suggestRelatedLinks(content, options = {}) {
       );
       for (const match of semanticMatches) {
         if (match.similarity < SEMANTIC_MIN_SIMILARITY) continue;
+        const semanticEntityWithType = entitiesWithTypes.find(
+          (et) => et.entity.name === match.entityName
+        );
+        if (!semanticEntityWithType) continue;
+        if (isCommonWordFalsePositive(match.entityName, content, semanticEntityWithType.category)) continue;
         const boost = match.similarity * SEMANTIC_MAX_BOOST * semanticStrictnessMultiplier;
         const existing = scoredEntities.find((e) => e.name === match.entityName);
         if (existing) {
           existing.score += boost;
           existing.breakdown.semanticBoost = boost;
         } else if (!linkedEntities.has(match.entityName.toLowerCase())) {
-          const entityWithType = entitiesWithTypes.find(
-            (et) => et.entity.name === match.entityName
-          );
-          if (!entityWithType) continue;
           if (!disabled.has("length_filter") && match.entityName.length > MAX_ENTITY_LENGTH) continue;
           if (!disabled.has("article_filter") && isLikelyArticleTitle(match.entityName)) continue;
-          const { entity, category } = entityWithType;
-          const layerTypeBoost = disabled.has("type_boost") ? 0 : getTypeBoost(category, getConfig()?.custom_categories);
+          const { entity, category } = semanticEntityWithType;
+          const layerTypeBoost = disabled.has("type_boost") ? 0 : getTypeBoost(category, getConfig()?.custom_categories, match.entityName);
           const layerContextBoost = disabled.has("context_boost") ? 0 : contextBoosts[category] || 0;
           const layerHubBoost = disabled.has("hub_boost") ? 0 : getHubBoost(entity);
           const layerCrossFolderBoost = disabled.has("cross_folder") ? 0 : notePath && entity.path ? getCrossFolderBoost(entity.path, notePath) : 0;
@@ -3717,7 +4058,9 @@ async function suggestRelatedLinks(content, options = {}) {
               category,
               breakdown: {
                 contentMatch: 0,
+                fuzzyMatch: 0,
                 cooccurrenceBoost: 0,
+                rarityAdjustment: 0,
                 typeBoost: layerTypeBoost,
                 contextBoost: layerContextBoost,
                 recencyBoost: 0,
@@ -3729,16 +4072,22 @@ async function suggestRelatedLinks(content, options = {}) {
                 edgeWeightBoost: layerEdgeWeightBoost
               }
             });
-            entitiesWithContentMatch.add(match.entityName);
+            entitiesWithAnyScoringPath.add(match.entityName);
           }
         }
       }
     } catch {
     }
   }
-  const relevantEntities = scoredEntities.filter(
-    (e) => entitiesWithContentMatch.has(e.name)
-  );
+  for (const entry of scoredEntities) {
+    const contentRelevance = entry.breakdown.contentMatch + entry.breakdown.fuzzyMatch + (entry.breakdown.semanticBoost ?? 0);
+    entry.score = capScoreWithoutContentRelevance(entry.score, contentRelevance, config);
+  }
+  const relevantEntities = scoredEntities.filter((e) => {
+    if (!entitiesWithAnyScoringPath.has(e.name)) return false;
+    if (config.minContentMatch > 0 && e.breakdown.contentMatch < config.minContentMatch) return false;
+    return true;
+  });
   if (relevantEntities.length === 0) {
     return emptyResult;
   }
@@ -3775,7 +4124,7 @@ async function suggestRelatedLinks(content, options = {}) {
           );
         }
         for (const e of scoredEntities) {
-          if (!entitiesWithContentMatch.has(e.name)) continue;
+          if (!entitiesWithAnyScoringPath.has(e.name)) continue;
           if (relevantEntities.some((r) => r.name === e.name)) continue;
           insertStmt.run(
             now,
@@ -3809,7 +4158,7 @@ async function suggestRelatedLinks(content, options = {}) {
   const MIN_SUFFIX_CONTENT = noteContext === "daily" ? 2 : 3;
   const suffixCandidates = topEntries.filter((e) => {
     if (e.score < MIN_SUFFIX_SCORE) return false;
-    if (!(e.breakdown.contentMatch >= MIN_SUFFIX_CONTENT || e.breakdown.cooccurrenceBoost >= MIN_SUFFIX_CONTENT || (e.breakdown.semanticBoost ?? 0) >= MIN_SUFFIX_CONTENT)) return false;
+    if (e.breakdown.contentMatch < MIN_SUFFIX_CONTENT) return false;
     if (!disabled.has("fatigue")) {
       const escapedName = e.name.replace(/[.*+?^${}()|[\]\\]/g, "\\$&");
       const suffixPattern = new RegExp(`\u2192 .*\\[\\[${escapedName}\\]\\]`, "g");
@@ -4029,6 +4378,8 @@ async function applyProactiveSuggestions(filePath, vaultPath2, suggestions, conf
     if (stateDb2 && isSuppressed(stateDb2, candidate.entity)) continue;
     if (stateDb2) {
       const entityObj = getEntityByName(stateDb2, candidate.entity);
+      const category = entityObj?.category ?? "other";
+      if (isCommonWordFalsePositive(candidate.entity, content, category)) continue;
       if (entityObj) {
         entityObjects.push({
           name: entityObj.name,
@@ -4088,6 +4439,7 @@ var init_wikilinks = __esm({
     init_recency();
     init_embeddings();
     init_edgeWeights();
+    init_levenshtein();
     init_vault_scope();
     moduleStateDb4 = null;
     moduleConfig = null;
@@ -4149,8 +4501,14 @@ var init_wikilinks = __esm({
         // Single-word entities need multiple content matches
         stemMatchBonus: 3,
         // Lower bonus for stem-only matches
-        exactMatchBonus: 10
+        exactMatchBonus: 10,
         // Standard bonus for exact matches
+        fuzzyMatchBonus: 2,
+        // Low fuzzy bonus — supplementary signal only
+        contentRelevanceFloor: 5,
+        noRelevanceCap: 12,
+        minCooccurrenceGate: 6,
+        minContentMatch: 3
       },
       balanced: {
         minWordLength: 3,
@@ -4161,8 +4519,14 @@ var init_wikilinks = __esm({
         requireMultipleMatches: false,
         stemMatchBonus: 5,
         // Standard bonus for stem matches
-        exactMatchBonus: 10
+        exactMatchBonus: 10,
         // Standard bonus for exact matches
+        fuzzyMatchBonus: 4,
+        // Moderate fuzzy bonus
+        contentRelevanceFloor: 5,
+        noRelevanceCap: 10,
+        minCooccurrenceGate: 5,
+        minContentMatch: 2
       },
       aggressive: {
         minWordLength: 3,
@@ -4173,8 +4537,14 @@ var init_wikilinks = __esm({
         requireMultipleMatches: false,
         stemMatchBonus: 6,
         // Higher bonus for stem matches
-        exactMatchBonus: 10
+        exactMatchBonus: 10,
         // Standard bonus for exact matches
+        fuzzyMatchBonus: 5,
+        // Higher fuzzy bonus — discovery mode
+        contentRelevanceFloor: 3,
+        noRelevanceCap: 18,
+        minCooccurrenceGate: 3,
+        minContentMatch: 0
       }
     };
     TYPE_BOOST = {
@@ -4385,6 +4755,103 @@ var init_proactiveQueue = __esm({
   }
 });
 
+// src/generated/tool-embeddings.generated.ts
+var tool_embeddings_generated_exports = {};
+__export(tool_embeddings_generated_exports, {
+  TOOL_EMBEDDINGS_MANIFEST: () => TOOL_EMBEDDINGS_MANIFEST
+});
+var TOOL_EMBEDDINGS_MANIFEST;
+var init_tool_embeddings_generated = __esm({
+  "src/generated/tool-embeddings.generated.ts"() {
+    "use strict";
+    TOOL_EMBEDDINGS_MANIFEST = {
+      model: "Xenova/all-MiniLM-L6-v2",
+      dims: 384,
+      version: 1,
+      generatedAt: "2026-03-30T01:13:41.843Z",
+      sourceHash: "befa36303ffa6fdb",
+      tools: [
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+        { name: "vault_update_frontmatter", category: "write", tier: 1, descriptionHash: "a47d40ffbd9b64fe", embedding: [3025e-6, 0.069481, -0.020214, 0.040912, 0.022417, -0.019862, -0.082628, -2122e-6, -0.014702, -0.016693, -0.029666, 3715e-6, 0.012231, -0.082566, 0.062312, 0.054372, -0.073285, 0.037987, -392e-6, -0.026554, -0.027998, 0.030671, 0.052947, 0.052299, -1558e-6, 0.028571, -0.066689, -0.02771, -0.016447, -0.019221, -1485e-6, 0.063806, 0.058962, 0.027227, 0.049323, 0.128016, -0.084259, 0.071075, -0.023717, -0.016094, 781e-5, -0.018086, -0.033762, 0.038799, -0.011419, -0.131204, -0.016022, -0.056764, 1797e-6, 6894e-6, 0.045712, -0.106872, -0.072278, 0.03821, -0.043272, 0.126332, -0.065271, 0.052426, -0.084185, -0.05245, 0.091997, 0.010353, 0.024533, -0.108528, 0.054086, 0.030548, 0.058701, 0.027134, 0.037303, 3885e-6, 0.093335, 0.023905, -0.02538, -0.048753, -0.033334, 0.037917, -7355e-6, 0.049192, -0.012558, -0.019817, 0.014961, -0.090752, -0.025464, 0.032226, 0.019772, -0.016976, -0.047508, -0.11282, -0.011829, -0.077957, 4306e-6, -0.117739, 0.030035, -0.0476, -0.010689, 0.067377, -0.029314, -0.052771, -281e-5, 0.033223, 6672e-6, -0.032222, 0.083968, 0.065554, 0.089385, 0.07532, 0.035532, 0.032166, -0.104153, 5974e-6, 0.060481, -81e-6, 0.077513, -0.040108, 0.034792, 0.044935, -0.015255, -0.038417, -0.038848, -0.015122, 0.147839, 0.014367, 0.098555, -0.053763, -0.040781, -0.121923, -3613e-6, 0, 0.091337, 0.127786, -0.02989, 0.010424, 0.039609, 3024e-6, 0.037395, -0.023207, 0.016547, 0.02837, 0.039847, 0.043012, -0.026068, -0.063308, -0.066829, -0.064504, 0.037346, 0.062652, 0.028708, 7765e-6, 0.028452, 0.071256, -0.089661, 29e-5, 0.054975, 0.024975, -59e-5, -0.049548, -0.058957, -5332e-6, 0.052174, 0.054414, 0.07973, 0.022847, -3052e-6, -1131e-6, -0.046505, -0.059425, 0.017253, -0.087945, 0.046749, 0.034301, 0.034753, -0.056932, 0.012403, -0.036254, -3975e-6, 0.050501, 0.071501, -0.041424, -0.050307, 0.02098, -0.070952, -0.014178, -0.02171, -0.112825, -4902e-6, -0.013906, 4102e-6, 8784e-6, 0.05713, -659e-5, -0.096118, 0.056165, -0.095933, 0.033638, -0.018831, -0.022721, 0.040962, 9661e-6, 2181e-6, 0.064708, -0.091218, 0.022571, -0.012976, -0.102114, -0.020311, 0.043877, 8261e-6, -0.068916, -0.021741, -0.07308, -0.083729, 0.123112, 1868e-6, 0.076771, 0.054204, -0.039255, -0.063251, -0.029438, -0.024632, -0.058136, 0.016283, -0.057538, 3035e-6, -0, 0.060903, -0.027032, -0.012369, 0.052551, 1392e-6, 0.053681, 0.055989, 0.035778, 0.020945, 0.061143, -0.034319, 0.057069, 995e-5, -0.063395, -0.040598, 0.024621, -0.056127, -0.070658, -8295e-6, 0.018973, -3332e-6, 0.032288, -0.035729, 0.122378, 123e-5, -0.03873, 9503e-6, -0.03015, 1905e-6, -0.063499, -0.02308, -0.023808, -0.020367, -8183e-6, -0.029822, -0.012347, 0.045784, -8798e-6, -0.120894, 0.016983, 0.022446, -0.049298, -0.106153, -0.028142, 0.019967, -0.032849, -8416e-6, 0.045188, -0.026318, -0.042142, 0.059717, -0.048322, -6355e-6, -0.026544, -0.013866, 0.023741, 0.017776, 2963e-6, -721e-5, 0.031464, 0.028063, 0.075207, 0.016429, -0.030109, 0.01775, -0.095344, -0.066561, 0.070308, -0.05202, 3433e-6, 1024e-6, -215e-5, 0.108162, 0.022196, 0.063718, 5453e-6, 0.017357, -0.079122, 0.114017, -0.043077, -0.038973, -9659e-6, 0.025343, 0.048606, -0.031496, 0.018673, 0.044212, 0.085459, -0.060066, 9528e-6, -0.062693, -0.022688, 0.015653, -8407e-6, 0.014172, -0, -0.030091, 0.088935, -0.13105, -0.02962, -1195e-6, -0.055068, 0.016722, 0.033949, 0.021043, -0.054953, -0.010191, 0.054551, -0.066554, -0.030681, -0.012529, 0.026151, -0.017135, 0.044823, -0.063156, -0.042643, 0.019409, 0.041693, -0.012822, -0.043482, 0.0586, 0.014575, 2409e-6, 0.037005, 0.050547, 0.02509, 0.041944, -0.069513, 0.07276, 0.016224, -6202e-6, 0.082265, 0.096653, -0.028571, 7785e-6, 0.103299, 0.034466, -0.019286, -5308e-6, 0.014758, -0.014162, -0.037214, -0.015413, 0.014221, 0.046202, -0.058354, 6031e-6, -0.034403, -3131e-6, -0.036972, -0.030123, 6947e-6, 0.102191, 0.061492, 0.05731, -0.01362, 0.131632, -0.065036, 0.02844, 0.03573] },
+        { name: "wikilink_feedback", category: "wikilinks", tier: 2, descriptionHash: "8cac16a861768b77", embedding: [-0.057719, -2005e-6, -0.046806, 0.08065, 0.025483, -0.029491, -0.031477, 0.072273, -0.012593, 0.020281, 0.01672, -0.052323, 0.035062, -3526e-6, -0.027752, 0.083636, 0.018952, 0.067645, 0.025101, -0.103489, 0.058623, 0.010979, 0.052207, 0.023203, 0.03579, -0.0676, -0.117394, 0.077013, 0.016933, -0.081211, -0.068116, 0.039832, -0.060332, 0.016068, -0.072331, 0.017061, 0.087072, -6006e-6, 0.045247, -0.043267, -3304e-6, -0.039659, 0.01329, 967e-6, -0.051123, 0.010289, -0.064966, -0.043007, -0.114022, 0.097008, -0.094459, -0.043015, 0.019798, 0.025427, 0.034083, 0.05947, -0.092207, 8879e-6, -0.045854, -0.042093, 0.014754, -8037e-6, -0.10821, 0.036374, 8375e-6, 0.027176, -0.016976, 0.036157, 0.045318, -0.069192, -0.057823, -0.027869, 467e-5, -0.019705, 0.034348, -0.038064, -0.040646, -183e-5, -0.052091, -0.098651, -2429e-6, 0.093318, -349e-5, 0.02069, 0.047832, -0.050209, 0.088497, 0.03934, -0.069302, 0.046895, 0.036568, 0.021862, 0.048473, -4537e-6, -0.055023, 0.045379, -0.014206, -0.093813, 0.059281, 0.065181, 0.02729, 0.048777, 5129e-6, -4269e-6, -0.025751, -0.027289, 2859e-6, 0.111919, 0.015338, 0.01992, -0.010135, 0.053951, -0.068423, -0.091846, 0.031074, -0.016728, -0.072743, 0.037474, 0.09044, 0.057709, 0.070423, 0.019593, -0.017762, -0.062535, 0.013188, 0.035787, -6689e-6, -0, 0.112942, 0.082273, -0.018112, 0.035911, -0.028441, 0.049559, -0.034345, -0.02976, -0.078178, -0.061287, -0.048487, 0.097205, -0.057776, 5081e-6, 0.047653, -4923e-6, -0.027732, 0.079916, -6013e-6, -4707e-6, 0.066569, -0.010828, 2653e-6, 0.055975, 0.15118, 7545e-6, 9619e-6, 0.037415, -0.125981, 0.018841, 0.056158, -0.049312, 779e-6, -0.015889, 0.040608, -5045e-6, -2548e-6, -0.043607, 0.031788, -0.079962, 3087e-6, -3396e-6, -0.078119, 0.019647, -0.044474, -4992e-6, -0.030746, -0.063407, -1206e-6, 0.03324, 0.036393, 5002e-6, -1554e-6, -4898e-6, 756e-5, -0.029319, -0.022553, -3373e-6, -0.031584, 0.065237, 0.025691, -0.014665, -0.063976, -0.106095, -0.075516, 0.046215, -0.045685, -0.027245, 0.038892, 393e-6, -0.056695, 0.04634, 0.029227, 0.020788, -0.021015, -0.06776, -0.110318, -0.121037, -0.042387, 0.050466, -0.020212, -0.077565, -0.083494, -0.017649, 0.041814, -9681e-6, 0.0567, -0.019874, -0.037093, -0.019616, -0.061441, 0.030222, 0.056308, 0.030386, -6365e-6, -0, -282e-6, -0.029324, 0.024137, 0.035718, -0.036665, -3989e-6, -6545e-6, -0.017627, 894e-6, 0.083372, 0.066233, -0.066723, -0.077913, 0.011673, -0.029407, -0.017474, -0.025672, -0.100527, 1721e-6, 0.073076, 0.034106, 0.073648, 0.010425, 0.103187, 0.023792, -3878e-6, 0.049821, -0.020578, 0.054715, -0.051505, 0.024512, -0.101163, 0.036605, 0.016313, 0.017718, -0.034398, 0.011365, -0.103661, -0.024432, 0.024748, 0.099225, 117e-5, -0.042435, -0.015554, -0.046782, 0.023628, -0.047377, 0.045117, -0.105363, -0.055288, 0.015294, 0.033592, -0.012232, -2774e-6, 705e-5, 0.030469, -0.023753, 0.016046, -0.042674, 0.032472, -0.013246, 0.047424, -0.05479, 0.0882, 0.079681, -0.03543, 0.025255, -0.031942, -0.034701, 0.070732, -0.014497, 0.032277, 0.037822, -0.089811, 0.087327, -0.030272, -0.019864, -0.030145, -0.03868, -0.032653, -0.062026, 5934e-6, 0.107528, 0.017577, 0.037664, -0.01608, 0.051227, 0.06378, 0.034422, -0.056039, -2212e-6, -0.050331, -0.063861, 0.082896, 0.031453, -0, -0.026478, 0.021685, 0.019193, 0.043299, 0.017727, 7282e-6, 0.025712, 0.073525, -0.035463, 3542e-6, 0.05383, -0.012838, -0.118541, -0.050014, 0.115059, -0.05719, 0.012378, 0.095752, -8969e-6, -0.078867, -0.039752, 3976e-6, -0.010662, -8019e-6, 1359e-6, 0.022637, -2773e-6, 0.111781, 0.010934, -0.088178, 0.033068, 0.011601, -573e-5, -0.066258, -218e-6, 0.069654, -0.026662, 0.033676, 0.028944, 0.02856, 0.057065, 0.05222, -0.036216, 0.107696, -0.010027, 0.04889, -9379e-6, -0.014577, 0.017649, -0.11746, 0.014457, -0.053851, 0.033141, 0.023217, -0.044481, 0.100295, 0.035812, -0.051222, -0.030808, -0.047731, 0.121694, 7653e-6, -0.033495, 0.055734] }
+      ]
+    };
+  }
+});
+
 // src/core/write/constants.ts
 function estimateTokens(content) {
   const str = typeof content === "string" ? content : JSON.stringify(content);
@@ -6061,6 +6528,7 @@ import { fileURLToPath as fileURLToPath2 } from "url";
 import { dirname as dirname7, join as join21 } from "path";
 import { McpServer } from "@modelcontextprotocol/sdk/server/mcp.js";
 import { StdioServerTransport } from "@modelcontextprotocol/sdk/server/stdio.js";
+import { performance as performance2 } from "node:perf_hooks";
 
 // src/core/read/graph.ts
 init_vault();
@@ -7592,6 +8060,19 @@ function createStepTracker() {
       steps.push({ name: current.name, duration_ms: Date.now() - current.startTime, input: current.input, output });
       current = null;
     },
+    /** Close an already-started step as skipped without leaving current dangling. */
+    skipCurrent(reason, output) {
+      if (!current) return;
+      steps.push({
+        name: current.name,
+        duration_ms: Date.now() - current.startTime,
+        input: current.input,
+        output: output ?? {},
+        skipped: true,
+        skip_reason: reason
+      });
+      current = null;
+    },
     skip(name, reason) {
       steps.push({ name, duration_ms: 0, input: {}, output: {}, skipped: true, skip_reason: reason });
     }
@@ -7658,6 +8139,18 @@ function computeEntityDiff(before, after) {
   }
   return { added, removed, alias_changes };
 }
+function getLastSuccessfulEvent(stateDb2) {
+  const row = stateDb2.db.prepare(
+    "SELECT * FROM index_events WHERE success = 1 ORDER BY timestamp DESC LIMIT 1"
+  ).get();
+  return row ? rowToEvent(row) : null;
+}
+function getLastEventByTrigger(stateDb2, trigger) {
+  const row = stateDb2.db.prepare(
+    "SELECT * FROM index_events WHERE trigger = ? AND success = 1 ORDER BY timestamp DESC LIMIT 1"
+  ).get(trigger);
+  return row ? rowToEvent(row) : null;
+}
 function getRecentIndexEvents(stateDb2, limit = 20) {
   const rows = stateDb2.db.prepare(
     "SELECT * FROM index_events ORDER BY timestamp DESC LIMIT ?"
@@ -8515,11 +9008,37 @@ function refreshIfStale(vaultPath2, index, excludeTags) {
 init_wikilinkFeedback();
 init_corrections();
 init_edgeWeights();
+var PIPELINE_TOTAL_STEPS = 22;
+function createEmptyPipelineActivity() {
+  return {
+    busy: false,
+    trigger: null,
+    started_at: null,
+    current_step: null,
+    completed_steps: 0,
+    total_steps: PIPELINE_TOTAL_STEPS,
+    pending_events: 0,
+    last_completed_at: null,
+    last_completed_trigger: null,
+    last_completed_duration_ms: null,
+    last_completed_files: null,
+    last_completed_steps: []
+  };
+}
 async function runStep(name, tracker, meta, fn) {
   tracker.start(name, meta);
   try {
     const result = await fn();
-    tracker.end(result);
+    if (result && "kind" in result) {
+      const tagged = result;
+      if (tagged.kind === "skipped") {
+        tracker.skipCurrent(tagged.reason, tagged.output);
+      } else {
+        tracker.end(tagged.output);
+      }
+    } else {
+      tracker.end(result);
+    }
   } catch (e) {
     tracker.end({ error: String(e) });
     serverLog("watcher", `${name}: failed: ${e}`, "error");
@@ -8528,11 +9047,32 @@ async function runStep(name, tracker, meta, fn) {
 var PipelineRunner = class {
   constructor(p) {
     this.p = p;
-    this.tracker = createStepTracker();
+    this.activity = p.ctx.pipelineActivity;
+    const baseTracker = createStepTracker();
+    this.tracker = {
+      steps: baseTracker.steps,
+      start: (name, input) => {
+        this.activity.current_step = name;
+        baseTracker.start(name, input);
+      },
+      end: (output) => {
+        baseTracker.end(output);
+        this.activity.completed_steps = baseTracker.steps.length;
+      },
+      skipCurrent: (reason, output) => {
+        baseTracker.skipCurrent(reason, output);
+        this.activity.completed_steps = baseTracker.steps.length;
+      },
+      skip: (name, reason) => {
+        baseTracker.skip(name, reason);
+        this.activity.completed_steps = baseTracker.steps.length;
+      }
+    };
     this.batchStart = Date.now();
   }
   tracker;
   batchStart;
+  activity;
   // Shared state between steps
   entitiesAfter = [];
   entitiesBefore = [];
@@ -8544,6 +9084,13 @@ var PipelineRunner = class {
   suggestionResults = [];
   async run() {
     const { p, tracker } = this;
+    this.activity.busy = true;
+    this.activity.trigger = "watcher";
+    this.activity.started_at = this.batchStart;
+    this.activity.current_step = null;
+    this.activity.completed_steps = 0;
+    this.activity.total_steps = PIPELINE_TOTAL_STEPS;
+    this.activity.pending_events = p.events.length;
     try {
       await runStep("drain_proactive_queue", tracker, {}, () => this.drainQueue());
       await this.indexRebuild();
@@ -8556,8 +9103,8 @@ var PipelineRunner = class {
       if (p.sd) {
         await runStep("edge_weights", tracker, {}, () => this.edgeWeights());
       }
-      await this.noteEmbeddings();
-      await this.entityEmbeddings();
+      await runStep("note_embeddings", tracker, { files: p.events.length }, () => this.noteEmbeddings());
+      await runStep("entity_embeddings", tracker, { files: p.events.length }, () => this.entityEmbeddings());
       await this.indexCache();
       await this.taskCache();
       await runStep("forward_links", tracker, { files: p.events.length }, () => this.forwardLinks());
@@ -8583,6 +9130,13 @@ var PipelineRunner = class {
           steps: tracker.steps
         });
       }
+      this.activity.busy = false;
+      this.activity.current_step = null;
+      this.activity.last_completed_at = Date.now();
+      this.activity.last_completed_trigger = "watcher";
+      this.activity.last_completed_duration_ms = duration;
+      this.activity.last_completed_files = p.events.length;
+      this.activity.last_completed_steps = tracker.steps.map((s) => s.name);
       serverLog("watcher", `Batch complete: ${p.events.length} files, ${duration}ms, ${tracker.steps.length} steps`);
     } catch (err) {
       p.updateIndexState("error", err instanceof Error ? err : new Error(String(err)));
@@ -8598,6 +9152,13 @@ var PipelineRunner = class {
           steps: tracker.steps
         });
       }
+      this.activity.busy = false;
+      this.activity.current_step = null;
+      this.activity.last_completed_at = Date.now();
+      this.activity.last_completed_trigger = "watcher";
+      this.activity.last_completed_duration_ms = duration;
+      this.activity.last_completed_files = p.events.length;
+      this.activity.last_completed_steps = tracker.steps.map((s) => s.name);
       serverLog("watcher", `Failed to rebuild index: ${err instanceof Error ? err.message : err}`, "error");
     }
   }
@@ -8618,6 +9179,7 @@ var PipelineRunner = class {
       };
       const batchResult = await processBatch(vaultIndex2, p.vp, absoluteBatch);
       this.hasEntityRelevantChanges = batchResult.hasEntityRelevantChanges;
+      vaultIndex2.builtAt = /* @__PURE__ */ new Date();
       serverLog("watcher", `Incremental: ${batchResult.successful}/${batchResult.total} files in ${batchResult.durationMs}ms`);
     }
     p.updateIndexState("ready");
@@ -8789,70 +9351,66 @@ var PipelineRunner = class {
   }
   // ── Step 4: Note embeddings ───────────────────────────────────────
   async noteEmbeddings() {
-    const { p, tracker } = this;
-    if (hasEmbeddingsIndex()) {
-      tracker.start("note_embeddings", { files: p.events.length });
-      let embUpdated = 0;
-      let embRemoved = 0;
-      for (const event of p.events) {
-        try {
-          if (event.type === "delete") {
-            removeEmbedding(event.path);
-            embRemoved++;
-          } else if (event.path.endsWith(".md")) {
-            const absPath = path15.join(p.vp, event.path);
-            await updateEmbedding(event.path, absPath);
-            embUpdated++;
-          }
-        } catch {
-        }
-      }
-      let orphansRemoved = 0;
+    const { p } = this;
+    if (!hasEmbeddingsIndex()) {
+      return { kind: "skipped", reason: "not built" };
+    }
+    let embUpdated = 0;
+    let embRemoved = 0;
+    for (const event of p.events) {
       try {
-        orphansRemoved = removeOrphanedNoteEmbeddings();
-      } catch (e) {
-        serverLog("watcher", `Note embedding orphan cleanup failed: ${e}`, "error");
+        if (event.type === "delete") {
+          removeEmbedding(event.path);
+          embRemoved++;
+        } else if (event.path.endsWith(".md")) {
+          const absPath = path15.join(p.vp, event.path);
+          await updateEmbedding(event.path, absPath);
+          embUpdated++;
+        }
+      } catch {
       }
-      tracker.end({ updated: embUpdated, removed: embRemoved, orphans_removed: orphansRemoved });
-      serverLog("watcher", `Note embeddings: ${embUpdated} updated, ${embRemoved} removed, ${orphansRemoved} orphans cleaned`);
-    } else {
-      tracker.skip("note_embeddings", "not built");
     }
+    let orphansRemoved = 0;
+    try {
+      orphansRemoved = removeOrphanedNoteEmbeddings();
+    } catch (e) {
+      serverLog("watcher", `Note embedding orphan cleanup failed: ${e}`, "error");
+    }
+    serverLog("watcher", `Note embeddings: ${embUpdated} updated, ${embRemoved} removed, ${orphansRemoved} orphans cleaned`);
+    return { kind: "done", output: { updated: embUpdated, removed: embRemoved, orphans_removed: orphansRemoved } };
   }
   // ── Step 5: Entity embeddings ─────────────────────────────────────
   async entityEmbeddings() {
-    const { p, tracker } = this;
-    if (hasEntityEmbeddingsIndex() && p.sd) {
-      tracker.start("entity_embeddings", { files: p.events.length });
-      let entEmbUpdated = 0;
-      let entEmbOrphansRemoved = 0;
-      const entEmbNames = [];
-      try {
-        const allEntities = getAllEntitiesFromDb(p.sd);
-        for (const event of p.events) {
-          if (event.type === "delete" || !event.path.endsWith(".md")) continue;
-          const matching = allEntities.filter((e) => e.path === event.path);
-          for (const entity of matching) {
-            await updateEntityEmbedding(entity.name, {
-              name: entity.name,
-              path: entity.path,
-              category: entity.category,
-              aliases: entity.aliases
-            }, p.vp);
-            entEmbUpdated++;
-            entEmbNames.push(entity.name);
-          }
+    const { p } = this;
+    if (!hasEntityEmbeddingsIndex() || !p.sd) {
+      return { kind: "skipped", reason: !p.sd ? "no sd" : "not built" };
+    }
+    let entEmbUpdated = 0;
+    let entEmbOrphansRemoved = 0;
+    const entEmbNames = [];
+    try {
+      const allEntities = getAllEntitiesFromDb(p.sd);
+      for (const event of p.events) {
+        if (event.type === "delete" || !event.path.endsWith(".md")) continue;
+        const matching = allEntities.filter((e) => e.path === event.path);
+        for (const entity of matching) {
+          await updateEntityEmbedding(entity.name, {
+            name: entity.name,
+            path: entity.path,
+            category: entity.category,
+            aliases: entity.aliases
+          }, p.vp);
+          entEmbUpdated++;
+          entEmbNames.push(entity.name);
         }
-        const currentNames = new Set(allEntities.map((e) => e.name));
-        entEmbOrphansRemoved = removeOrphanedEntityEmbeddings(currentNames);
-      } catch (e) {
-        serverLog("watcher", `Entity embedding update/orphan cleanup failed: ${e}`, "error");
       }
-      tracker.end({ updated: entEmbUpdated, updated_entities: entEmbNames.slice(0, 10), orphans_removed: entEmbOrphansRemoved });
-      serverLog("watcher", `Entity embeddings: ${entEmbUpdated} updated, ${entEmbOrphansRemoved} orphans cleaned`);
-    } else {
-      tracker.skip("entity_embeddings", !p.sd ? "no sd" : "not built");
+      const currentNames = new Set(allEntities.map((e) => e.name));
+      entEmbOrphansRemoved = removeOrphanedEntityEmbeddings(currentNames);
+    } catch (e) {
+      serverLog("watcher", `Entity embedding update/orphan cleanup failed: ${e}`, "error");
     }
+    serverLog("watcher", `Entity embeddings: ${entEmbUpdated} updated, ${entEmbOrphansRemoved} orphans cleaned`);
+    return { kind: "done", output: { updated: entEmbUpdated, updated_entities: entEmbNames.slice(0, 10), orphans_removed: entEmbOrphansRemoved } };
   }
   // ── Step 6: Index cache ───────────────────────────────────────────
   async indexCache() {
@@ -9458,6 +10016,293 @@ async function flushLogs() {
 
 // src/index.ts
 init_embeddings();
+
+// src/core/read/toolRouting.ts
+init_embeddings();
+init_vault_scope();
+var MANIFEST_VERSION = 1;
+var MIN_COSINE = 0.3;
+var MAX_ACTIVATIONS = 3;
+var MIN_QUERY_TOKENS = 2;
+var MIN_QUERY_CHARS = 12;
+var routingIndex = null;
+var manifestModel = null;
+var effectivenessSnapshots = /* @__PURE__ */ new Map();
+var EFFECTIVENESS_PRIOR_MEAN = 0.8;
+async function initToolRouting() {
+  try {
+    const mod = await Promise.resolve().then(() => (init_tool_embeddings_generated(), tool_embeddings_generated_exports));
+    const manifest = mod.TOOL_EMBEDDINGS_MANIFEST;
+    return loadFromManifest(manifest);
+  } catch {
+    routingIndex = null;
+    manifestModel = null;
+    return false;
+  }
+}
+function hasToolRouting() {
+  return routingIndex !== null && routingIndex.length > 0;
+}
+function getToolRoutingMode(toolTierMode2) {
+  const env = process.env.FLYWHEEL_TOOL_ROUTING?.trim().toLowerCase();
+  if (env === "pattern" || env === "hybrid" || env === "semantic") return env;
+  return toolTierMode2 === "tiered" ? "hybrid" : "pattern";
+}
+async function getSemanticActivations(query) {
+  return rankAndCollapse(query, routingIndex, hasToolRouting(), manifestModel ?? "");
+}
+function loadEffectivenessSnapshot(vaultName, scores) {
+  if (scores.size > 0) {
+    effectivenessSnapshots.set(vaultName, scores);
+  } else {
+    effectivenessSnapshots.delete(vaultName);
+  }
+}
+function getActiveEffectivenessSnapshot() {
+  const scope = getActiveScopeOrNull();
+  if (!scope?.name) return null;
+  return effectivenessSnapshots.get(scope.name) ?? null;
+}
+function validateManifest(manifest) {
+  return !!(manifest && manifest.version === MANIFEST_VERSION && manifest.dims > 0 && manifest.model && Array.isArray(manifest.tools) && manifest.tools.length > 0);
+}
+function loadFromManifest(manifest) {
+  if (!validateManifest(manifest)) {
+    routingIndex = null;
+    manifestModel = null;
+    return false;
+  }
+  const records = [];
+  for (const tool of manifest.tools) {
+    if (Array.isArray(tool.embedding) && tool.embedding.length === manifest.dims) {
+      records.push({
+        name: tool.name,
+        category: tool.category,
+        tier: tool.tier,
+        embedding: new Float32Array(tool.embedding)
+      });
+    }
+  }
+  if (records.length === 0) {
+    routingIndex = null;
+    manifestModel = null;
+    return false;
+  }
+  routingIndex = records;
+  manifestModel = manifest.model;
+  return true;
+}
+function isQueryTooShort(query) {
+  const nonSpaceChars = query.replace(/\s/g, "").length;
+  if (nonSpaceChars < MIN_QUERY_CHARS) return true;
+  const tokens = query.trim().split(/\s+/);
+  if (tokens.length < MIN_QUERY_TOKENS) return true;
+  return false;
+}
+async function rankAndCollapse(query, index, isValid, model, embedFn, injectedEffectiveness) {
+  if (!isValid || !index || index.length === 0) return [];
+  if (!embedFn) {
+    try {
+      const activeModel = getActiveModelId();
+      if (activeModel !== model) return [];
+    } catch {
+    }
+  }
+  if (isQueryTooShort(query)) return [];
+  const embed = embedFn ?? embedTextCached;
+  const queryEmbedding = await embed(query);
+  const effectivenessSnapshot = injectedEffectiveness ?? getActiveEffectivenessSnapshot();
+  const scored = [];
+  for (const record of index) {
+    if (record.tier === 1) continue;
+    const cosine = cosineSimilarity(queryEmbedding, record.embedding);
+    let adjustedScore = cosine;
+    if (effectivenessSnapshot) {
+      const eff = effectivenessSnapshot.get(record.name);
+      if (eff !== void 0 && eff < EFFECTIVENESS_PRIOR_MEAN) {
+        adjustedScore = cosine * (eff / EFFECTIVENESS_PRIOR_MEAN);
+      }
+    }
+    if (adjustedScore >= MIN_COSINE) {
+      scored.push({
+        name: record.name,
+        category: record.category,
+        tier: record.tier,
+        score: Math.round(adjustedScore * 1e3) / 1e3
+      });
+    }
+  }
+  const categoryBest = /* @__PURE__ */ new Map();
+  for (const hit of scored) {
+    const existing = categoryBest.get(hit.category);
+    if (!existing || hit.score > existing.score) {
+      categoryBest.set(hit.category, { tier: hit.tier, score: hit.score });
+    }
+  }
+  const activations = Array.from(categoryBest.entries()).map(([category, { tier, score }]) => ({ category, tier, score })).sort((a, b) => b.score - a.score).slice(0, MAX_ACTIVATIONS);
+  return activations;
+}
+
+// src/core/shared/toolSelectionFeedback.ts
+var PRIOR_ALPHA2 = 4;
+var PRIOR_BETA2 = 1;
+function recordToolSelectionFeedback(stateDb2, feedback) {
+  let toolName = feedback.tool_name ?? "";
+  let queryContext = null;
+  let sessionId = feedback.session_id ?? null;
+  if (feedback.tool_invocation_id) {
+    const row = stateDb2.db.prepare(
+      "SELECT tool_name, query_context, session_id FROM tool_invocations WHERE id = ?"
+    ).get(feedback.tool_invocation_id);
+    if (row) {
+      toolName = row.tool_name;
+      queryContext = row.query_context;
+      sessionId = row.session_id ?? sessionId;
+    }
+  }
+  if (!toolName) {
+    throw new Error("tool_name is required when tool_invocation_id is not provided or not found");
+  }
+  const result = stateDb2.db.prepare(
+    `INSERT INTO tool_selection_feedback
+     (timestamp, tool_invocation_id, tool_name, query_context, expected_tool, expected_category, correct, source, session_id)
+     VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)`
+  ).run(
+    Date.now(),
+    feedback.tool_invocation_id ?? null,
+    toolName,
+    queryContext,
+    feedback.expected_tool ?? null,
+    feedback.expected_category ?? null,
+    feedback.correct ? 1 : 0,
+    feedback.source ?? "explicit",
+    sessionId
+  );
+  return Number(result.lastInsertRowid);
+}
+function getToolSelectionList(stateDb2, limit = 50) {
+  const rows = stateDb2.db.prepare(
+    `SELECT * FROM tool_selection_feedback ORDER BY timestamp DESC LIMIT ?`
+  ).all(limit);
+  return rows.map((r) => ({
+    id: r.id,
+    timestamp: r.timestamp,
+    tool_invocation_id: r.tool_invocation_id,
+    tool_name: r.tool_name,
+    query_context: r.query_context,
+    expected_tool: r.expected_tool,
+    expected_category: r.expected_category,
+    correct: r.correct === null ? null : r.correct === 1,
+    source: r.source,
+    rule_id: r.rule_id,
+    rule_version: r.rule_version,
+    session_id: r.session_id
+  }));
+}
+function getToolSelectionStats(stateDb2, daysBack = 30) {
+  const tableExists = stateDb2.db.prepare(
+    "SELECT name FROM sqlite_master WHERE type='table' AND name='tool_selection_feedback'"
+  ).get();
+  if (!tableExists) return [];
+  const cutoff = Date.now() - daysBack * 24 * 60 * 60 * 1e3;
+  const rows = stateDb2.db.prepare(`
+    SELECT
+      tool_name,
+      COUNT(*) as total_feedback,
+      SUM(CASE WHEN correct = 1 THEN 1 ELSE 0 END) as correct_count,
+      SUM(CASE WHEN correct = 0 THEN 1 ELSE 0 END) as wrong_count
+    FROM tool_selection_feedback
+    WHERE timestamp >= ?
+      AND source = 'explicit'
+      AND correct IS NOT NULL
+    GROUP BY tool_name
+    ORDER BY total_feedback DESC
+  `).all(cutoff);
+  return rows.map((r) => {
+    const alpha = PRIOR_ALPHA2 + r.correct_count;
+    const beta = PRIOR_BETA2 + r.wrong_count;
+    return {
+      tool_name: r.tool_name,
+      total_feedback: r.total_feedback,
+      correct_count: r.correct_count,
+      wrong_count: r.wrong_count,
+      posterior_accuracy: Math.round(alpha / (alpha + beta) * 1e3) / 1e3
+    };
+  });
+}
+function getToolEffectivenessScores(stateDb2, minObservations = 15) {
+  const stats = getToolSelectionStats(stateDb2, 365);
+  const scores = /* @__PURE__ */ new Map();
+  for (const s of stats) {
+    if (s.total_feedback >= minObservations) {
+      scores.set(s.tool_name, s.posterior_accuracy);
+    }
+  }
+  return scores;
+}
+function getHeuristicMisroutes(stateDb2, limit = 50) {
+  const rows = stateDb2.db.prepare(
+    `SELECT * FROM tool_selection_feedback
+     WHERE source = 'heuristic' AND correct IS NULL
+     ORDER BY timestamp DESC LIMIT ?`
+  ).all(limit);
+  return rows.map((r) => ({
+    id: r.id,
+    timestamp: r.timestamp,
+    tool_invocation_id: r.tool_invocation_id,
+    tool_name: r.tool_name,
+    query_context: r.query_context,
+    expected_tool: r.expected_tool,
+    expected_category: r.expected_category,
+    correct: null,
+    source: "heuristic",
+    rule_id: r.rule_id,
+    rule_version: r.rule_version,
+    session_id: r.session_id
+  }));
+}
+function getToolSelectionReport(stateDb2, daysBack = 7) {
+  const cutoff = Date.now() - daysBack * 24 * 60 * 60 * 1e3;
+  const totals = stateDb2.db.prepare(`
+    SELECT
+      COUNT(*) as total_feedback,
+      SUM(CASE WHEN correct = 1 THEN 1 ELSE 0 END) as confirmed_correct,
+      SUM(CASE WHEN correct = 0 THEN 1 ELSE 0 END) as confirmed_wrong
+    FROM tool_selection_feedback
+    WHERE timestamp >= ?
+      AND source = 'explicit'
+      AND correct IS NOT NULL
+  `).get(cutoff);
+  if (totals.total_feedback === 0) return null;
+  const wrongTools = stateDb2.db.prepare(`
+    SELECT
+      tool_name,
+      SUM(CASE WHEN correct = 0 THEN 1 ELSE 0 END) as wrong_count,
+      COUNT(*) as total_feedback
+    FROM tool_selection_feedback
+    WHERE timestamp >= ?
+      AND source = 'explicit'
+      AND correct IS NOT NULL
+    GROUP BY tool_name
+    HAVING wrong_count > 0
+    ORDER BY wrong_count DESC
+    LIMIT 10
+  `).all(cutoff);
+  return {
+    total_feedback: totals.total_feedback,
+    confirmed_correct: totals.confirmed_correct,
+    confirmed_wrong: totals.confirmed_wrong,
+    accuracy_rate: totals.total_feedback > 0 ? Math.round(totals.confirmed_correct / totals.total_feedback * 1e3) / 1e3 : null,
+    top_reported_wrong_tools: wrongTools.map((r) => ({
+      tool_name: r.tool_name,
+      wrong_count: r.wrong_count,
+      total_feedback: r.total_feedback,
+      wrong_rate: Math.round(r.wrong_count / r.total_feedback * 1e3) / 1e3
+    }))
+  };
+}
+
+// src/index.ts
 import { openStateDb, scanVaultEntities as scanVaultEntities4, getAllEntitiesFromDb as getAllEntitiesFromDb6, loadContentHashes, saveContentHashBatch, renameContentHash, checkDbIntegrity as checkDbIntegrity2, safeBackupAsync as safeBackupAsync2, preserveCorruptedDb, deleteStateDbFiles, attemptSalvage } from "@velvetmonkey/vault-core";
 
 // src/core/write/memory.ts
@@ -10073,9 +10918,9 @@ function purgeOldBenchmarks(stateDb2, retentionDays = 90) {
 
 // src/core/shared/toolTracking.ts
 function recordToolInvocation(stateDb2, event) {
-  stateDb2.db.prepare(
-    `INSERT INTO tool_invocations (timestamp, tool_name, session_id, note_paths, duration_ms, success, response_tokens, baseline_tokens)
-     VALUES (?, ?, ?, ?, ?, ?, ?, ?)`
+  const result = stateDb2.db.prepare(
+    `INSERT INTO tool_invocations (timestamp, tool_name, session_id, note_paths, duration_ms, success, response_tokens, baseline_tokens, query_context)
+     VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)`
   ).run(
     Date.now(),
     event.tool_name,
@@ -10084,8 +10929,10 @@ function recordToolInvocation(stateDb2, event) {
     event.duration_ms ?? null,
     event.success !== false ? 1 : 0,
     event.response_tokens ?? null,
-    event.baseline_tokens ?? null
+    event.baseline_tokens ?? null,
+    event.query_context ?? null
   );
+  return Number(result.lastInsertRowid);
 }
 function rowToInvocation(row) {
   return {
@@ -10097,7 +10944,8 @@ function rowToInvocation(row) {
     duration_ms: row.duration_ms,
     success: row.success === 1,
     response_tokens: row.response_tokens,
-    baseline_tokens: row.baseline_tokens
+    baseline_tokens: row.baseline_tokens,
+    query_context: row.query_context
   };
 }
 function getToolUsageSummary(stateDb2, daysBack = 30) {
@@ -10541,8 +11389,8 @@ var ALL_CATEGORIES = [
 ];
 var PRESETS = {
   // Presets
-  default: ["search", "read", "write", "tasks", "memory"],
   full: [...ALL_CATEGORIES],
+  agent: ["search", "read", "write", "tasks", "memory"],
   // Composable bundles (one per category)
   graph: ["graph"],
   schema: ["schema"],
@@ -10554,15 +11402,15 @@ var PRESETS = {
   temporal: ["temporal"],
   diagnostics: ["diagnostics"]
 };
-var DEFAULT_PRESET = "default";
+var DEFAULT_PRESET = "full";
 var DEPRECATED_ALIASES = {
-  agent: "default",
-  // agent merged into default — memory now included
-  minimal: "default",
-  writer: "default",
-  // writer was default+tasks, now default includes tasks
-  researcher: "default",
-  // use default,graph for graph exploration
+  default: "full",
+  // default is now an alias for full
+  minimal: "agent",
+  writer: "agent",
+  // writer was agent+tasks, agent now includes tasks
+  researcher: "agent",
+  // use agent,graph for graph exploration
   backlinks: "graph",
   // get_backlinks moved to graph
   structure: "read",
@@ -10614,6 +11462,42 @@ function parseEnabledCategories(envValue) {
   }
   return categories;
 }
+function resolveToolConfig(envValue) {
+  const raw = (envValue ?? process.env.FLYWHEEL_TOOLS ?? process.env.FLYWHEEL_PRESET)?.trim();
+  if (!raw) {
+    return {
+      categories: new Set(PRESETS[DEFAULT_PRESET]),
+      preset: DEFAULT_PRESET,
+      isFullToolset: true
+    };
+  }
+  const lowerValue = raw.toLowerCase();
+  if (PRESETS[lowerValue]) {
+    const cats = new Set(PRESETS[lowerValue]);
+    return {
+      categories: cats,
+      preset: lowerValue,
+      isFullToolset: cats.size === ALL_CATEGORIES.length && ALL_CATEGORIES.every((c) => cats.has(c))
+    };
+  }
+  if (DEPRECATED_ALIASES[lowerValue]) {
+    const resolved = DEPRECATED_ALIASES[lowerValue];
+    if (PRESETS[resolved]) {
+      const cats = new Set(PRESETS[resolved]);
+      return {
+        categories: cats,
+        preset: resolved,
+        isFullToolset: cats.size === ALL_CATEGORIES.length && ALL_CATEGORIES.every((c) => cats.has(c))
+      };
+    }
+  }
+  const categories = parseEnabledCategories(raw);
+  return {
+    categories,
+    preset: null,
+    isFullToolset: categories.size === ALL_CATEGORIES.length && ALL_CATEGORIES.every((c) => categories.has(c))
+  };
+}
 var TOOL_CATEGORY = {
   // search (3 tools)
   search: "search",
@@ -10681,8 +11565,9 @@ var TOOL_CATEGORY = {
   predict_stale_notes: "temporal",
   track_concept_evolution: "temporal",
   temporal_summary: "temporal",
-  // diagnostics (20 tools) -- vault health, stats, config, activity, merges, doctor, trust, benchmark, history, learning report, calibration export
+  // diagnostics (22 tools) -- vault health, stats, config, activity, merges, doctor, trust, benchmark, history, learning report, calibration export, pipeline status, tool selection feedback
   health_check: "diagnostics",
+  pipeline_status: "diagnostics",
   get_vault_stats: "diagnostics",
   get_folder_structure: "diagnostics",
   refresh_index: "diagnostics",
@@ -10701,22 +11586,128 @@ var TOOL_CATEGORY = {
   vault_session_history: "diagnostics",
   vault_entity_history: "diagnostics",
   flywheel_learning_report: "diagnostics",
-  flywheel_calibration_export: "diagnostics"
+  flywheel_calibration_export: "diagnostics",
+  tool_selection_feedback: "diagnostics"
+};
+var TOOL_TIER = {
+  // Tier 1 — always visible (= agent preset, 18 tools)
+  search: 1,
+  init_semantic: 1,
+  find_similar: 1,
+  get_note_structure: 1,
+  get_section_content: 1,
+  find_sections: 1,
+  vault_add_to_section: 1,
+  vault_remove_from_section: 1,
+  vault_replace_in_section: 1,
+  vault_update_frontmatter: 1,
+  vault_create_note: 1,
+  vault_undo_last_mutation: 1,
+  policy: 1,
+  tasks: 1,
+  vault_toggle_task: 1,
+  vault_add_task: 1,
+  memory: 1,
+  brief: 1,
+  // Tier 2 — context-triggered categories + core diagnostics (33 tools)
+  graph_analysis: 2,
+  semantic_analysis: 2,
+  get_backlinks: 2,
+  get_forward_links: 2,
+  get_connection_strength: 2,
+  list_entities: 2,
+  get_link_path: 2,
+  get_common_neighbors: 2,
+  get_weighted_links: 2,
+  get_strong_connections: 2,
+  export_graph: 2,
+  suggest_wikilinks: 2,
+  validate_links: 2,
+  wikilink_feedback: 2,
+  discover_stub_candidates: 2,
+  discover_cooccurrence_gaps: 2,
+  suggest_entity_aliases: 2,
+  unlinked_mentions_report: 2,
+  vault_record_correction: 2,
+  vault_list_corrections: 2,
+  vault_resolve_correction: 2,
+  absorb_as_alias: 2,
+  get_context_around_date: 2,
+  predict_stale_notes: 2,
+  track_concept_evolution: 2,
+  temporal_summary: 2,
+  health_check: 2,
+  pipeline_status: 2,
+  get_vault_stats: 2,
+  refresh_index: 2,
+  flywheel_config: 2,
+  server_log: 2,
+  flywheel_doctor: 2,
+  // Tier 3 — explicit or advanced operations (25 tools)
+  vault_schema: 3,
+  schema_conventions: 3,
+  schema_validate: 3,
+  note_intelligence: 3,
+  rename_field: 3,
+  migrate_field_values: 3,
+  rename_tag: 3,
+  vault_delete_note: 3,
+  vault_move_note: 3,
+  vault_rename_note: 3,
+  merge_entities: 3,
+  get_folder_structure: 3,
+  get_all_entities: 3,
+  get_unlinked_mentions: 3,
+  vault_growth: 3,
+  vault_activity: 3,
+  suggest_entity_merges: 3,
+  dismiss_merge_suggestion: 3,
+  vault_init: 3,
+  flywheel_trust_report: 3,
+  flywheel_benchmark: 3,
+  vault_session_history: 3,
+  vault_entity_history: 3,
+  flywheel_learning_report: 3,
+  flywheel_calibration_export: 3,
+  tool_selection_feedback: 3
 };
-function generateInstructions(categories, registry) {
+function assertToolTierCoverage() {
+  const categoryKeys = Object.keys(TOOL_CATEGORY).sort();
+  const tierKeys = Object.keys(TOOL_TIER).sort();
+  const missingTier = categoryKeys.filter((key) => !(key in TOOL_TIER));
+  const missingCategory = tierKeys.filter((key) => !(key in TOOL_CATEGORY));
+  if (missingTier.length > 0 || missingCategory.length > 0 || categoryKeys.length !== tierKeys.length) {
+    throw new Error(
+      `TOOL_TIER must cover exactly the same tools as TOOL_CATEGORY. missing tier entries: ${missingTier.join(", ") || "none"}; missing category entries: ${missingCategory.join(", ") || "none"}`
+    );
+  }
+}
+assertToolTierCoverage();
+function generateInstructions(categories, registry, activeTierCategories) {
   const parts = [];
+  const tieringActive = activeTierCategories !== void 0;
+  const isCategoryVisible = (category) => {
+    if (!categories.has(category)) return false;
+    if (!tieringActive) return true;
+    if (PRESETS.agent.includes(category)) return true;
+    return activeTierCategories.has(category);
+  };
   parts.push(`Flywheel provides tools to search, read, and write an Obsidian vault's knowledge graph.
 
 Tool selection:
-  1. "search" is the primary tool. One call searches notes, entities, and memories.
-     Each result carries: type (note/entity/memory), frontmatter, tags, aliases,
-     backlinks (ranked by edge weight \xD7 recency), outlinks (existence-checked),
-     section provenance, extracted dates, entity bridges, confidence scores,
-     content snippet or preview, entity category, hub score, and timestamps.
+  1. "search" is the primary tool for content lookup. One call searches notes,
+     entities, and memories. Each result carries: type (note/entity/memory),
+     frontmatter, tags, aliases, backlinks (ranked by edge weight \xD7 recency),
+     outlinks (existence-checked), section provenance, extracted dates, entity
+     bridges, confidence scores, content snippet or preview, entity category,
+     hub score, and timestamps.
      This is a decision surface \u2014 usually enough to answer without reading any files.
-  2. Escalate to "get_note_structure" only when you need the full markdown content
+  2. For structural, temporal, wikilink, or diagnostic questions, use the
+     specialized tools in those categories instead of search with filters.
+     See the category sections below.
+  3. Escalate to "get_note_structure" only when you need the full markdown content
      or word count. Use "get_section_content" to read one section by heading name.
-  3. Start with a broad search: just query text, no filters. Only add folder, tag,
+  4. Start with a broad search: just query text, no filters. Only add folder, tag,
      or frontmatter filters to narrow a second search if needed.`);
   if (!hasEmbeddingsIndex()) {
     parts.push(`
@@ -10739,7 +11730,7 @@ This server manages multiple vaults. Every tool has an optional "vault" paramete
   - \`description:\` \u2014 one-line summary shown in search results and used for entity ranking. Without it, search quality is degraded.
   - Tags \u2014 used for filtering, suggestion scoring, and schema analysis.
 Good frontmatter is the highest-leverage action for improving suggestions, search, and link quality.`);
-  if (categories.has("read")) {
+  if (isCategoryVisible("read")) {
     parts.push(`
 ## Read
 
@@ -10747,7 +11738,7 @@ Escalation: "search" (enriched metadata + content preview) \u2192 "get_note_stru
 (full content + word count) \u2192 "get_section_content" (single section).
 "find_sections" finds headings across the vault by pattern.`);
   }
-  if (categories.has("write")) {
+  if (isCategoryVisible("write")) {
     parts.push(`
 ## Write
 
@@ -10785,7 +11776,7 @@ Example: ask "create a policy that generates a weekly review note, pulls open ta
 project frontmatter" \u2014 Claude authors the YAML, saves it to .claude/policies/, and runs it whenever
 you say "run the weekly review for this week".`);
   }
-  if (categories.has("memory")) {
+  if (isCategoryVisible("memory")) {
     parts.push(`
 ## Memory
 
@@ -10794,7 +11785,7 @@ conversation start. "search" finds everything \u2014 notes, entities, and memori
 with action "store" persists observations, facts, or preferences across sessions (e.g. key decisions,
 user preferences, project status).`);
   }
-  if (categories.has("graph")) {
+  if (isCategoryVisible("graph")) {
     parts.push(`
 ## Graph
 
@@ -10804,8 +11795,11 @@ Use "graph_analysis" for structural queries (hubs, orphans, dead ends).
 Use "get_connection_strength" to measure link strength between two entities.
 Use "get_link_path" to trace the shortest path between any two entities or notes.
 Use "get_strong_connections" to find the strongest or most-connected relationships for an entity.`);
+  } else if (tieringActive && categories.has("graph")) {
+    parts.push(`
+**More tools available:** Ask about graph connections, backlinks, hubs, clusters, or paths to unlock graph analysis tools.`);
   }
-  if (categories.has("note-ops")) {
+  if (isCategoryVisible("note-ops")) {
     parts.push(`
 ## Note Operations
 
@@ -10814,13 +11808,13 @@ Use "vault_move_note" to relocate a note to a different folder (updates all back
 Use "vault_rename_note" to change a note's title in place (updates all backlinks automatically).
 Use "merge_entities" to consolidate two entity notes into one \u2014 adds aliases, merges content, rewires wikilinks, and deletes the source.`);
   }
-  if (categories.has("tasks")) {
+  if (isCategoryVisible("tasks")) {
     parts.push(`
 ## Tasks
 
 Use "tasks" to query tasks across the vault (filter by status, due date, path). Use "vault_add_task" to create tasks and "vault_toggle_task" to complete them.`);
   }
-  if (categories.has("schema")) {
+  if (isCategoryVisible("schema")) {
     parts.push(`
 ## Schema
 
@@ -10828,6 +11822,74 @@ Use "vault_schema" before bulk operations to understand field types, values, and
 Use "schema_conventions" to infer frontmatter conventions from folder usage patterns, find notes with incomplete metadata, or suggest field values.
 Use "schema_validate" to validate frontmatter against explicit rules or find notes missing expected fields by folder.
 Use "note_intelligence" for per-note analysis (completeness, quality, suggestions).`);
+  } else if (tieringActive && categories.has("schema")) {
+    parts.push(`
+**Advanced tools:** Ask to unlock schema tools for conventions, validation, migrations, and bulk metadata analysis.`);
+  }
+  if (isCategoryVisible("wikilinks")) {
+    parts.push(`
+## Wikilinks
+
+Link quality and discovery \u2014 not for finding content (use search for that).
+
+- "What should be linked?" \u2192 unlinked_mentions_report (vault-wide linking opportunities)
+- "Suggest links for this note" \u2192 suggest_wikilinks (per-note entity mention analysis)
+- "Are any links broken?" \u2192 validate_links (dead links + fix suggestions)
+- "What topics need their own notes?" \u2192 discover_stub_candidates (frequently-linked but non-existent)
+- "What entities appear together?" \u2192 discover_cooccurrence_gaps (co-occurring but unlinked pairs)
+- "Was that link correct?" \u2192 wikilink_feedback (accept/reject, improves future suggestions)
+- "What aliases am I missing?" \u2192 suggest_entity_aliases (acronyms, short forms, alternate names)`);
+  } else if (tieringActive && categories.has("wikilinks")) {
+    parts.push(`
+**More tools available:** Ask about wikilinks, suggestions, stubs, or unlinked mentions to unlock wikilink tools.`);
+  }
+  if (isCategoryVisible("corrections")) {
+    parts.push(`
+## Corrections
+
+When the user says something is wrong \u2014 a bad link, wrong entity, wrong category:
+
+"vault_record_correction" persists a correction for future sessions.
+"vault_list_corrections" shows pending/applied/dismissed corrections.
+"vault_resolve_correction" marks a correction as applied or dismissed.
+Use "absorb_as_alias" when two names should resolve to the same entity without merging note bodies.`);
+  } else if (tieringActive && categories.has("corrections")) {
+    parts.push(`
+**More tools available:** Ask about errors, wrong links, or fixes to unlock correction tools.`);
+  }
+  if (isCategoryVisible("temporal")) {
+    parts.push(`
+## Temporal
+
+Search date filters (modified_after/modified_before) find content within a date range.
+Temporal tools analyze *patterns and changes* over time \u2014 use them for "what changed" not "what exists":
+
+- "What happened last week/month?" \u2192 temporal_summary (activity + entity momentum + maintenance alerts)
+- "How has X changed/evolved?" \u2192 track_concept_evolution (entity timeline: links, feedback, category shifts)
+- "What was I working on around March 15?" \u2192 get_context_around_date (notes, entities, activity in a window)
+- "What notes need attention?" \u2192 predict_stale_notes (importance \xD7 staleness \u2192 archive/update/review)
+
+temporal_summary composes the other three \u2014 use it for weekly/monthly reviews.`);
+  } else if (tieringActive && categories.has("temporal")) {
+    parts.push(`
+**More tools available:** Ask about time, history, evolution, or stale notes to unlock temporal tools.`);
+  }
+  if (isCategoryVisible("diagnostics")) {
+    parts.push(`
+## Diagnostics
+
+ - Triage: "health_check" (quick status) \u2192 "flywheel_doctor" (active problem detection) \u2192 "server_log" (event timeline)
+ - Stats: "get_vault_stats" (counts), "vault_growth" (trends over time), "get_folder_structure" (organization)
+ - Activity: "vault_activity" (tool usage), "vault_session_history" (session detail), "vault_entity_history" (entity timeline)
+ - System: "flywheel_trust_report" (config + boundaries), "flywheel_benchmark" (performance), "flywheel_learning_report" (auto-linking effectiveness)
+ - Entities: "suggest_entity_merges" (duplicates), "get_all_entities" (full list), "get_unlinked_mentions" (linking opportunities)
+ - Maintenance: "refresh_index" (rebuild), "flywheel_config" (settings), "vault_init" (first-time setup)
+
+Use "flywheel_config" to inspect runtime configuration and set "tool_tier_override" to "auto", "full", or "minimal" for this vault.`);
+  } else if (tieringActive && categories.has("diagnostics")) {
+    parts.push(`
+**More tools available:** Ask about vault health, indexing, status, or configuration to unlock diagnostic tools.
+**Advanced tools:** Ask to unlock note operations or deep diagnostics for note mutations, benchmarks, history, graph exports, and learning reports.`);
   }
   return parts.join("\n");
 }
@@ -10837,7 +11899,8 @@ import * as path37 from "path";
 import { dirname as dirname5, join as join19 } from "path";
 import { statSync as statSync6, readFileSync as readFileSync5 } from "fs";
 import { fileURLToPath } from "url";
-import { z as z39 } from "zod";
+import { z as z40 } from "zod";
+import { CallToolRequestSchema, ErrorCode, McpError } from "@modelcontextprotocol/sdk/types.js";
 import { getSessionId } from "@velvetmonkey/vault-core";
 
 // src/tools/read/query.ts
@@ -11569,6 +12632,33 @@ async function findSections(index, headingPattern, vaultPath2, folder) {
 }
 
 // src/tools/read/query.ts
+function shouldRunMultiHop(query, results, index) {
+  if (results.length < 3) return true;
+  if (results.length >= 8) return false;
+  const queryLower = query.toLowerCase();
+  const topResults = results.slice(0, 5);
+  let bridgeSignals = 0;
+  for (const r of topResults) {
+    const outlinks = r.outlink_names;
+    if (!outlinks) continue;
+    for (const name of outlinks) {
+      if (name.length >= 3 && !queryLower.includes(name.toLowerCase())) {
+        bridgeSignals++;
+      }
+    }
+  }
+  if (bridgeSignals >= 3) return true;
+  const folders = /* @__PURE__ */ new Set();
+  for (const r of topResults) {
+    const p = r.path;
+    if (p) {
+      const folder = p.split("/").slice(0, -1).join("/");
+      folders.add(folder);
+    }
+  }
+  if (folders.size === 1 && topResults.length >= 3) return true;
+  return false;
+}
 function applyGraphReranking(results, stateDb2) {
   if (!stateDb2) return;
   const cooccurrenceIndex2 = getCooccurrenceIndex();
@@ -11616,7 +12706,7 @@ function applySandwichOrdering(results) {
     results[i] = out[i];
   }
 }
-function applyEntityBridging(results, stateDb2, maxBridgesPerResult = 3) {
+function applyEntityBridging(results, stateDb2, maxBridgesPerResult = 5) {
   if (!stateDb2 || results.length < 2) return;
   const linkMap = /* @__PURE__ */ new Map();
   try {
@@ -11871,7 +12961,7 @@ function registerQueryTools(server2, getIndex, getVaultPath, getStateDb3) {
       include_children: z.boolean().default(false).describe('When true, tag filters also match child tags (e.g., has_tag: "project" also matches "project/active")'),
       folder: z.string().optional().describe("Filter results to a folder. Prefer searching without folder first, then add folder to narrow."),
       title_contains: z.string().optional().describe("Filter to notes whose title contains this text (case-insensitive)"),
-      // Date filters (absorbs temporal tools)
+      // Date filters (find notes by modification date — for pattern analysis use temporal tools)
       modified_after: z.string().optional().describe("Only notes modified after this date (YYYY-MM-DD)"),
       modified_before: z.string().optional().describe("Only notes modified before this date (YYYY-MM-DD)"),
       // Sorting
@@ -12068,7 +13158,7 @@ function registerQueryTools(server2, getIndex, getVaultPath, getStateDb3) {
               in_semantic: item.in_semantic,
               in_entity: item.in_entity
             }));
-            if (results2.length < 3) {
+            if (shouldRunMultiHop(query, results2, index)) {
               const hopResults = multiHopBackfill(results2, index, stateDb2, { maxBackfill: limit });
               const expansionTerms = extractExpansionTerms(results2, query, index);
               const expansionResults = expandQuery(expansionTerms, [...results2, ...hopResults], index, stateDb2);
@@ -12116,7 +13206,7 @@ function registerQueryTools(server2, getIndex, getVaultPath, getStateDb3) {
             ...enrichResultCompact({ path: item.path, title: item.title, snippet: item.snippet }, index, stateDb2),
             ..."in_fts5" in item ? { in_fts5: true } : { in_entity: true }
           }));
-          if (results2.length < 3) {
+          if (shouldRunMultiHop(query, results2, index)) {
             const hopResults = multiHopBackfill(results2, index, stateDb2, { maxBackfill: limit });
             const expansionTerms = extractExpansionTerms(results2, query, index);
             const expansionResults = expandQuery(expansionTerms, [...results2, ...hopResults], index, stateDb2);
@@ -12143,7 +13233,7 @@ function registerQueryTools(server2, getIndex, getVaultPath, getStateDb3) {
         const stateDbFts = getStateDb3();
         const fts5Filtered = applyFolderFilter(fts5Results);
         const results = fts5Filtered.map((r) => ({ ...enrichResultCompact({ path: r.path, title: r.title, snippet: r.snippet }, index, stateDbFts), in_fts5: true }));
-        if (results.length < 3) {
+        if (shouldRunMultiHop(query, results, index)) {
           const hopResults = multiHopBackfill(results, index, stateDbFts, { maxBackfill: limit });
           const expansionTerms = extractExpansionTerms(results, query, index);
           const expansionResults = expandQuery(expansionTerms, [...results, ...hopResults], index, stateDbFts);
@@ -12923,6 +14013,7 @@ function buildGraphData(index, stateDb2, options) {
     ).all(options.min_edge_weight);
     for (const row of rows) {
       const sourceId = xmlId("note", row.note_path);
+      if (!noteIds.has(sourceId)) continue;
       const targetLower = row.target.toLowerCase();
       let targetId;
       if (entityIds.has(xmlId("entity", row.target))) {
@@ -13119,8 +14210,8 @@ function registerGraphExportTools(server2, getIndex, getVaultPath, getStateDb3)
 import { z as z4 } from "zod";
 init_wikilinks();
 init_wikilinkFeedback();
-import { detectImplicitEntities as detectImplicitEntities3, COMMON_ENGLISH_WORDS } from "@velvetmonkey/vault-core";
-function findEntityMatches2(text, entities) {
+import { detectImplicitEntities as detectImplicitEntities3, COMMON_ENGLISH_WORDS as COMMON_ENGLISH_WORDS2, isCommonWordEntity } from "@velvetmonkey/vault-core";
+function findEntityMatches2(text, entities, commonWordKeys = /* @__PURE__ */ new Set()) {
   const matches = [];
   const sortedEntities = Array.from(entities.entries()).filter(([name]) => name.length >= 2).sort((a, b) => b[0].length - a[0].length);
   const skipRegions = [];
@@ -13190,6 +14281,10 @@ function findEntityMatches2(text, entities) {
       const isWordBoundaryAfter = /[\s\n\r.,;:!?()[\]{}'"<>-]/.test(charAfter);
       if (isWordBoundaryBefore && isWordBoundaryAfter && !shouldSkip(pos, end)) {
         const originalText = text.substring(pos, end);
+        if (commonWordKeys.has(entityLower) && originalText === originalText.toLowerCase()) {
+          searchStart = pos + 1;
+          continue;
+        }
         matches.push({
           entity: originalText,
           start: pos,
@@ -13220,7 +14315,9 @@ function registerWikilinkTools(server2, getIndex, getVaultPath, getStateDb3 = ()
   });
   const ScoreBreakdownSchema = z4.object({
     contentMatch: z4.coerce.number(),
+    fuzzyMatch: z4.coerce.number(),
     cooccurrenceBoost: z4.coerce.number(),
+    rarityAdjustment: z4.coerce.number(),
     typeBoost: z4.coerce.number(),
     contextBoost: z4.coerce.number(),
     recencyBoost: z4.coerce.number(),
@@ -13271,7 +14368,18 @@ function registerWikilinkTools(server2, getIndex, getVaultPath, getStateDb3 = ()
       const limit = Math.min(requestedLimit ?? 50, MAX_LIMIT);
       requireIndex();
       const index = getIndex();
-      const allMatches = findEntityMatches2(text, index.entities);
+      const commonWordKeys = /* @__PURE__ */ new Set();
+      for (const note of index.notes.values()) {
+        if (isCommonWordEntity(note.title)) {
+          commonWordKeys.add(note.title.toLowerCase());
+        }
+        for (const alias of note.aliases) {
+          if (isCommonWordEntity(alias)) {
+            commonWordKeys.add(alias.toLowerCase());
+          }
+        }
+      }
+      const allMatches = findEntityMatches2(text, index.entities, commonWordKeys);
       const matches = allMatches.slice(offset, offset + limit);
       const linkedSet = new Set(allMatches.map((m) => m.entity.toLowerCase()));
       const prospects = [];
@@ -13280,7 +14388,7 @@ function registerWikilinkTools(server2, getIndex, getVaultPath, getStateDb3 = ()
         if (links.length < 2) continue;
         if (index.entities.has(target.toLowerCase())) continue;
         if (linkedSet.has(target.toLowerCase())) continue;
-        if (COMMON_ENGLISH_WORDS.has(target.toLowerCase())) continue;
+        if (COMMON_ENGLISH_WORDS2.has(target.toLowerCase())) continue;
         if (target.length < 4) continue;
         const targetLower = target.toLowerCase();
         const textLower = text.toLowerCase();
@@ -13353,8 +14461,9 @@ function registerWikilinkTools(server2, getIndex, getVaultPath, getStateDb3 = ()
               for (const suggestion of scored.detailed) {
                 const stat5 = statsMap.get(suggestion.entity.toLowerCase());
                 if (stat5) {
-                  const posteriorMean = computePosteriorMean(stat5.weightedCorrect, stat5.weightedFp);
-                  const totalObs = PRIOR_ALPHA + stat5.weightedCorrect + PRIOR_BETA + stat5.weightedFp;
+                  const effectiveAlpha = isAiConfigEntity(suggestion.entity) ? AI_CONFIG_PRIOR_ALPHA : PRIOR_ALPHA;
+                  const posteriorMean = computePosteriorMean(stat5.weightedCorrect, stat5.weightedFp, effectiveAlpha);
+                  const totalObs = effectiveAlpha + stat5.weightedCorrect + PRIOR_BETA + stat5.weightedFp;
                   suggestion.suppressionContext = {
                     posteriorMean: Math.round(posteriorMean * 1e3) / 1e3,
                     totalObservations: Math.round(totalObs * 10) / 10,
@@ -13891,7 +15000,7 @@ init_serverLog();
 init_wikilinkFeedback();
 init_embeddings();
 var STALE_THRESHOLD_SECONDS = 300;
-function registerHealthTools(server2, getIndex, getVaultPath, getConfig2 = () => ({}), getStateDb3 = () => null, getWatcherStatus2 = () => null, getVersion = () => "unknown") {
+function registerHealthTools(server2, getIndex, getVaultPath, getConfig2 = () => ({}), getStateDb3 = () => null, getWatcherStatus2 = () => null, getVersion = () => "unknown", getPipelineActivityState = () => null) {
   const IndexProgressSchema = z5.object({
     parsed: z5.coerce.number().describe("Number of files parsed so far"),
     total: z5.coerce.number().describe("Total number of files to parse")
@@ -13982,11 +15091,22 @@ function registerHealthTools(server2, getIndex, getVaultPath, getConfig2 = () =>
     tasks_building: z5.boolean().describe("Whether the task cache is currently rebuilding"),
     watcher_state: z5.enum(["starting", "ready", "rebuilding", "dirty", "error"]).optional().describe("Current file watcher state"),
     watcher_pending: z5.coerce.number().optional().describe("Number of pending file events in the watcher queue"),
-    dead_link_count: z5.coerce.number().describe("Total number of broken/dead wikilinks across the vault"),
+    last_index_activity_at: z5.number().optional().describe("Epoch ms of latest successful index event (any trigger)"),
+    last_index_activity_ago_seconds: z5.coerce.number().optional().describe("Seconds since last successful index event"),
+    last_full_rebuild_at: z5.number().optional().describe("Epoch ms of latest startup_build or manual_refresh event"),
+    last_watcher_batch_at: z5.number().optional().describe("Epoch ms of latest watcher batch event"),
+    pipeline_activity: z5.object({
+      busy: z5.boolean(),
+      current_step: z5.string().nullable(),
+      started_at: z5.number().nullable(),
+      progress: z5.string().nullable(),
+      last_completed_ago_seconds: z5.number().nullable()
+    }).optional().describe("Live pipeline activity state"),
+    dead_link_count: z5.coerce.number().optional().describe("Total number of broken/dead wikilinks across the vault (full mode only)"),
     top_dead_link_targets: z5.array(z5.object({
       target: z5.string().describe("The dead link target"),
       mention_count: z5.coerce.number().describe("How many notes reference this dead target")
-    })).describe("Top 5 most-referenced dead link targets (highest-ROI candidates to create)"),
+    })).optional().describe("Top 5 most-referenced dead link targets (highest-ROI candidates to create, full mode only)"),
     sweep: z5.object({
       last_sweep_at: z5.number().describe("When the last background sweep completed (ms epoch)"),
       sweep_duration_ms: z5.number().describe("How long the last sweep took"),
@@ -14008,11 +15128,14 @@ function registerHealthTools(server2, getIndex, getVaultPath, getConfig2 = () =>
     "health_check",
     {
       title: "Health Check",
-      description: "Check MCP server health status. Returns vault accessibility, index freshness, and recommendations. Use at session start to verify MCP is working correctly.",
-      inputSchema: {},
+      description: 'Check MCP server health status. Returns vault accessibility, index freshness, and recommendations. Use at session start to verify MCP is working correctly. Pass mode="summary" (default) for lightweight polling or mode="full" for complete diagnostics.',
+      inputSchema: {
+        mode: z5.enum(["summary", "full"]).optional().default("summary").describe('Output mode: "summary" omits config, periodic notes, dead links, sweep, and recent pipelines; "full" returns everything')
+      },
       outputSchema: HealthCheckOutputSchema
     },
-    async () => {
+    async ({ mode = "summary" }) => {
+      const isFull = mode === "full";
       const index = getIndex();
       const vaultPath2 = getVaultPath();
       const recommendations = [];
@@ -14043,7 +15166,25 @@ function registerHealthTools(server2, getIndex, getVaultPath, getConfig2 = () =>
         }
       }
       const indexBuilt = indexState2 === "ready" && index !== void 0 && index.notes !== void 0;
-      const indexAge = indexBuilt && index.builtAt ? Math.floor((Date.now() - index.builtAt.getTime()) / 1e3) : -1;
+      let lastIndexActivityAt;
+      let lastFullRebuildAt;
+      let lastWatcherBatchAt;
+      let lastBuild;
+      let lastManual;
+      if (stateDb2) {
+        try {
+          const lastAny = getLastSuccessfulEvent(stateDb2);
+          if (lastAny) lastIndexActivityAt = lastAny.timestamp;
+          lastBuild = getLastEventByTrigger(stateDb2, "startup_build") ?? void 0;
+          lastManual = getLastEventByTrigger(stateDb2, "manual_refresh") ?? void 0;
+          lastFullRebuildAt = Math.max(lastBuild?.timestamp ?? 0, lastManual?.timestamp ?? 0) || void 0;
+          const lastWatcher = getLastEventByTrigger(stateDb2, "watcher");
+          if (lastWatcher) lastWatcherBatchAt = lastWatcher.timestamp;
+        } catch {
+        }
+      }
+      const freshnessTimestamp = lastFullRebuildAt ?? (indexBuilt && index.builtAt ? index.builtAt.getTime() : void 0);
+      const indexAge = freshnessTimestamp ? Math.floor((Date.now() - freshnessTimestamp) / 1e3) : -1;
       const indexStale = indexBuilt && indexAge > STALE_THRESHOLD_SECONDS;
       if (indexState2 === "building") {
         const { parsed, total } = indexProgress2;
@@ -14073,7 +15214,7 @@ function registerHealthTools(server2, getIndex, getVaultPath, getConfig2 = () =>
         status = "healthy";
       }
       let periodicNotes;
-      if (indexBuilt) {
+      if (isFull && indexBuilt) {
         const types = ["daily", "weekly", "monthly", "quarterly", "yearly"];
         periodicNotes = types.map((type) => {
           const result = detectPeriodicNotes(index, type);
@@ -14087,19 +15228,21 @@ function registerHealthTools(server2, getIndex, getVaultPath, getConfig2 = () =>
           };
         }).filter((p) => p.detected);
       }
-      const config = getConfig2();
-      const configInfo = Object.keys(config).length > 0 ? config : void 0;
+      let configInfo;
+      if (isFull) {
+        const config = getConfig2();
+        configInfo = Object.keys(config).length > 0 ? config : void 0;
+      }
       let lastRebuild;
       if (stateDb2) {
         try {
-          const events = getRecentIndexEvents(stateDb2, 1);
-          if (events.length > 0) {
-            const event = events[0];
+          const rebuildEvent = lastBuild && lastManual ? lastBuild.timestamp >= lastManual.timestamp ? lastBuild : lastManual : lastBuild ?? lastManual;
+          if (rebuildEvent) {
             lastRebuild = {
-              trigger: event.trigger,
-              timestamp: event.timestamp,
-              duration_ms: event.duration_ms,
-              ago_seconds: Math.floor((Date.now() - event.timestamp) / 1e3)
+              trigger: rebuildEvent.trigger,
+              timestamp: rebuildEvent.timestamp,
+              duration_ms: rebuildEvent.duration_ms,
+              ago_seconds: Math.floor((Date.now() - rebuildEvent.timestamp) / 1e3)
             };
           }
         } catch {
@@ -14122,25 +15265,28 @@ function registerHealthTools(server2, getIndex, getVaultPath, getConfig2 = () =>
           }
         } catch {
         }
-        try {
-          const events = getRecentIndexEvents(stateDb2, 10).filter((e) => e.steps && e.steps.length > 0).slice(0, 5);
-          if (events.length > 0) {
-            recentPipelines = events.map((e) => ({
-              timestamp: e.timestamp,
-              trigger: e.trigger,
-              duration_ms: e.duration_ms,
-              files_changed: e.files_changed,
-              changed_paths: e.changed_paths,
-              steps: e.steps
-            }));
+        if (isFull) {
+          try {
+            const events = getRecentIndexEvents(stateDb2, 10).filter((e) => e.steps && e.steps.length > 0).slice(0, 5);
+            if (events.length > 0) {
+              recentPipelines = events.map((e) => ({
+                timestamp: e.timestamp,
+                trigger: e.trigger,
+                duration_ms: e.duration_ms,
+                files_changed: e.files_changed,
+                changed_paths: e.changed_paths,
+                steps: e.steps
+              }));
+            }
+          } catch {
           }
-        } catch {
         }
       }
       const ftsState = getFTS5State();
       let deadLinkCount = 0;
-      const deadTargetCounts = /* @__PURE__ */ new Map();
-      if (indexBuilt) {
+      let topDeadLinkTargets = [];
+      if (isFull && indexBuilt) {
+        const deadTargetCounts = /* @__PURE__ */ new Map();
         for (const note of index.notes.values()) {
           for (const link of note.outlinks) {
             if (!resolveTarget(index, link.target)) {
@@ -14150,8 +15296,8 @@ function registerHealthTools(server2, getIndex, getVaultPath, getConfig2 = () =>
             }
           }
         }
+        topDeadLinkTargets = Array.from(deadTargetCounts.entries()).map(([target, mention_count]) => ({ target, mention_count })).sort((a, b) => b.mention_count - a.mention_count).slice(0, 5);
       }
-      const topDeadLinkTargets = Array.from(deadTargetCounts.entries()).map(([target, mention_count]) => ({ target, mention_count })).sort((a, b) => b.mention_count - a.mention_count).slice(0, 5);
       let vault_health_score = 0;
       if (indexBuilt && noteCount > 0) {
         const avgOutlinks = linkCount / noteCount;
@@ -14180,6 +15326,14 @@ function registerHealthTools(server2, getIndex, getVaultPath, getConfig2 = () =>
           linkDensity * 25 + orphanRatio * 20 + deadLinkRatio * 15 + fmCoverage * 15 + freshness * 15 + entityCoverage * 10
         );
       }
+      const activity = getPipelineActivityState();
+      const pipelineActivity = {
+        busy: activity?.busy ?? false,
+        current_step: activity?.current_step ?? null,
+        started_at: activity?.started_at ?? null,
+        progress: activity && activity.busy && activity.total_steps > 0 ? `${activity.completed_steps}/${activity.total_steps} steps` : null,
+        last_completed_ago_seconds: activity?.last_completed_at ? Math.floor((Date.now() - activity.last_completed_at) / 1e3) : null
+      };
       const output = {
         status,
         vault_health_score,
@@ -14207,14 +15361,19 @@ function registerHealthTools(server2, getIndex, getVaultPath, getConfig2 = () =>
         embeddings_ready: hasEmbeddingsIndex(),
         embeddings_count: getEmbeddingsCount(),
         embedding_model: hasEmbeddingsIndex() ? getActiveModelId() : void 0,
-        embedding_diagnosis: hasEmbeddingsIndex() ? diagnoseEmbeddings(vaultPath2) : void 0,
+        embedding_diagnosis: isFull && hasEmbeddingsIndex() ? diagnoseEmbeddings(vaultPath2) : void 0,
         tasks_ready: isTaskCacheReady(),
         tasks_building: isTaskCacheBuilding(),
         watcher_state: getWatcherStatus2()?.state,
         watcher_pending: getWatcherStatus2()?.pendingEvents,
-        dead_link_count: deadLinkCount,
-        top_dead_link_targets: topDeadLinkTargets,
-        sweep: getSweepResults() ?? void 0,
+        last_index_activity_at: lastIndexActivityAt,
+        last_index_activity_ago_seconds: lastIndexActivityAt ? Math.floor((Date.now() - lastIndexActivityAt) / 1e3) : void 0,
+        last_full_rebuild_at: lastFullRebuildAt,
+        last_watcher_batch_at: lastWatcherBatchAt,
+        pipeline_activity: pipelineActivity,
+        dead_link_count: isFull ? deadLinkCount : void 0,
+        top_dead_link_targets: isFull ? topDeadLinkTargets : void 0,
+        sweep: isFull ? getSweepResults() ?? void 0 : void 0,
         recommendations
       };
       return {
@@ -14228,6 +15387,56 @@ function registerHealthTools(server2, getIndex, getVaultPath, getConfig2 = () =>
       };
     }
   );
+  server2.registerTool(
+    "pipeline_status",
+    {
+      title: "Pipeline Status",
+      description: "Live pipeline activity: whether a batch is running, current step, and recent completions. Lightweight process-local read \u2014 no DB queries unless detail=true.",
+      inputSchema: {
+        detail: z5.boolean().optional().default(false).describe("Include per-step timings for recent runs")
+      }
+    },
+    async ({ detail = false }) => {
+      const activity = getPipelineActivityState();
+      const now = Date.now();
+      const output = {
+        busy: activity?.busy ?? false,
+        trigger: activity?.trigger ?? null,
+        started_at: activity?.started_at ?? null,
+        age_ms: activity?.busy && activity.started_at ? now - activity.started_at : null,
+        current_step: activity?.current_step ?? null,
+        progress: activity && activity.busy && activity.total_steps > 0 ? `${activity.completed_steps}/${activity.total_steps} steps` : null,
+        pending_events: activity?.pending_events ?? 0,
+        last_completed: activity?.last_completed_at ? {
+          at: activity.last_completed_at,
+          ago_seconds: Math.floor((now - activity.last_completed_at) / 1e3),
+          trigger: activity.last_completed_trigger,
+          duration_ms: activity.last_completed_duration_ms,
+          files: activity.last_completed_files,
+          steps: activity.last_completed_steps
+        } : null
+      };
+      if (detail) {
+        const stateDb2 = getStateDb3();
+        if (stateDb2) {
+          try {
+            const events = getRecentIndexEvents(stateDb2, 10).filter((e) => e.steps && e.steps.length > 0).slice(0, 5);
+            output.recent_runs = events.map((e) => ({
+              timestamp: e.timestamp,
+              trigger: e.trigger,
+              duration_ms: e.duration_ms,
+              files_changed: e.files_changed,
+              steps: e.steps
+            }));
+          } catch {
+          }
+        }
+      }
+      return {
+        content: [{ type: "text", text: JSON.stringify(output, null, 2) }]
+      };
+    }
+  );
   const TagStatSchema = z5.object({
     tag: z5.string().describe("The tag name"),
     count: z5.coerce.number().describe("Number of notes with this tag")
@@ -14414,7 +15623,7 @@ function registerHealthTools(server2, getIndex, getVaultPath, getConfig2 = () =>
     "flywheel_doctor",
     {
       title: "Flywheel Doctor",
-      description: "Run comprehensive vault diagnostics and produce a one-page report. Actively checks for problems (unlike health_check which reports status). Checks: schema version, index freshness, embedding coverage, suppression health, cache freshness, FTS5 integrity, watcher state, and disk usage.",
+      description: "Is anything broken? Actively checks for problems (unlike health_check which reports status) Checks: schema version, index freshness, embedding coverage, suppression health, cache freshness, FTS5 integrity, watcher state, and disk usage.",
       inputSchema: {}
     },
     async () => {
@@ -14437,18 +15646,28 @@ function registerHealthTools(server2, getIndex, getVaultPath, getConfig2 = () =>
       const indexState2 = getIndexState();
       const indexBuilt = indexState2 === "ready" && index?.notes !== void 0;
       if (indexState2 === "ready" && indexBuilt) {
-        const age = Math.floor((Date.now() - index.builtAt.getTime()) / 1e3);
+        let activityAge = null;
+        if (stateDb2) {
+          try {
+            const lastEvt = getLastSuccessfulEvent(stateDb2);
+            if (lastEvt) activityAge = Math.floor((Date.now() - lastEvt.timestamp) / 1e3);
+          } catch {
+          }
+        }
+        const age = activityAge ?? Math.floor((Date.now() - index.builtAt.getTime()) / 1e3);
         if (age > STALE_THRESHOLD_SECONDS) {
-          checks.push({ name: "index_freshness", status: "warning", detail: `Index is ${Math.floor(age / 60)} minutes old`, fix: "Run refresh_index to rebuild" });
+          checks.push({ name: "index_activity", status: "warning", detail: `Last index activity ${Math.floor(age / 60)} minutes ago`, fix: "Run refresh_index to rebuild" });
         } else {
-          checks.push({ name: "index_freshness", status: "ok", detail: `Index built ${age}s ago, ${index.notes.size} notes, ${index.entities.size} entities` });
+          checks.push({ name: "index_activity", status: "ok", detail: `Last activity ${age}s ago, ${index.notes.size} notes, ${index.entities.size} entities` });
         }
+        const snapshotAge = Math.floor((Date.now() - index.builtAt.getTime()) / 1e3);
+        checks.push({ name: "index_snapshot_age", status: "ok", detail: `In-memory snapshot built ${snapshotAge}s ago` });
       } else if (indexState2 === "building") {
         const progress = getIndexProgress();
-        checks.push({ name: "index_freshness", status: "warning", detail: `Index building (${progress.parsed}/${progress.total} files)` });
+        checks.push({ name: "index_activity", status: "warning", detail: `Index building (${progress.parsed}/${progress.total} files)` });
       } else {
         const err = getIndexError();
-        checks.push({ name: "index_freshness", status: "error", detail: `Index in ${indexState2} state${err ? ": " + err.message : ""}`, fix: "Run refresh_index" });
+        checks.push({ name: "index_activity", status: "error", detail: `Index in ${indexState2} state${err ? ": " + err.message : ""}`, fix: "Run refresh_index" });
       }
       const embReady = hasEmbeddingsIndex();
       const embCount = getEmbeddingsCount();
@@ -14633,7 +15852,7 @@ function registerHealthTools(server2, getIndex, getVaultPath, getConfig2 = () =>
     "flywheel_trust_report",
     {
       title: "Flywheel Trust Report",
-      description: "Auditable manifest of what this server can do and what it has done. Returns active config/preset, enabled tool categories, transport mode, recent write operations, and enforced boundaries. Supports the cognitive sovereignty thesis with verifiable transparency.",
+      description: "What can this server do and what has it done? Returns active config/preset, enabled tool categories, transport mode, recent write operations, and enforced boundaries. Supports the cognitive sovereignty thesis with verifiable transparency.",
       inputSchema: {}
     },
     async () => {
@@ -14644,8 +15863,9 @@ function registerHealthTools(server2, getIndex, getVaultPath, getConfig2 = () =>
       const transportMode = (process.env.FLYWHEEL_TRANSPORT ?? "stdio").toLowerCase();
       const httpPort = transportMode !== "stdio" ? parseInt(process.env.FLYWHEEL_HTTP_PORT ?? "3111", 10) : void 0;
       const httpHost = transportMode !== "stdio" ? process.env.FLYWHEEL_HTTP_HOST ?? "127.0.0.1" : void 0;
-      const presetEnv = process.env.FLYWHEEL_TOOLS || process.env.FLYWHEEL_PRESET || "default";
-      const enabledCategories2 = parseEnabledCategories(presetEnv);
+      const toolConfig2 = resolveToolConfig();
+      const enabledCategories2 = toolConfig2.categories;
+      const presetEnv = toolConfig2.preset ?? "custom";
       const disabledCategories = ALL_CATEGORIES.filter((c) => !enabledCategories2.has(c));
       const totalTools = Object.keys(TOOL_CATEGORY).length;
       const enabledTools = Object.entries(TOOL_CATEGORY).filter(([, cat]) => enabledCategories2.has(cat)).length;
@@ -14699,7 +15919,7 @@ function registerHealthTools(server2, getIndex, getVaultPath, getConfig2 = () =>
     "flywheel_benchmark",
     {
       title: "Flywheel Benchmark",
-      description: 'Run, record, and trend longitudinal performance benchmarks. Modes: "run" executes live benchmarks (search latency, entity lookup, index/watcher timing) and records results; "history" shows past benchmark results; "trends" shows regression/improvement analysis over time.',
+      description: 'Is the server getting slower? Runs, records, and trends longitudinal performance benchmarks. Modes: "run" executes live benchmarks (search latency, entity lookup, index/watcher timing) and records results; "history" shows past benchmark results; "trends" shows regression/improvement analysis over time.',
       inputSchema: {
         mode: z5.enum(["run", "history", "trends"]).default("run").describe("run = execute benchmarks, history = past results, trends = regression analysis"),
         benchmark: z5.string().optional().describe('Filter to a specific benchmark name (e.g. "search_latency")'),
@@ -15076,6 +16296,16 @@ function registerSystemTools(server2, getIndex, setIndex, getVaultPath, setConfi
               }]));
               entityEmbeddingsRefreshed = await buildEntityEmbeddingsIndex(vaultPath2, entityMap);
               loadEntityEmbeddingsToMemory();
+              saveInferredCategories(classifyUncategorizedEntities(
+                entities.map((entity) => ({
+                  entity: {
+                    name: entity.name,
+                    path: entity.path,
+                    aliases: entity.aliases
+                  },
+                  category: entity.category
+                }))
+              ));
               tracker.end({ refreshed: entityEmbeddingsRefreshed });
               if (entityEmbeddingsRefreshed > 0) {
                 console.error(`[Flywheel] Entity embeddings: ${entityEmbeddingsRefreshed} updated`);
@@ -15416,6 +16646,16 @@ function registerSystemTools(server2, getIndex, setIndex, getVaultPath, setConfi
           }
         }
       }
+      const otherArr = entityIndex2.other;
+      if (Array.isArray(otherArr)) {
+        for (const entity of otherArr) {
+          const inferred = getInferredCategory(entity.name);
+          if (inferred) {
+            entity.inferredCategory = inferred.category;
+            entity.inferredConfidence = inferred.confidence;
+          }
+        }
+      }
       if (category) {
         const allCategories2 = Object.keys(entityIndex2).filter((k) => k !== "_metadata");
         for (const cat of allCategories2) {
@@ -21656,18 +22896,201 @@ function registerWikilinkFeedbackTools(server2, getStateDb3) {
   );
 }
 
+// src/tools/write/toolSelectionFeedback.ts
+import { z as z24 } from "zod";
+init_vault_scope();
+function registerToolSelectionFeedbackTools(server2, getStateDb3) {
+  server2.registerTool(
+    "tool_selection_feedback",
+    {
+      title: "Tool Selection Feedback",
+      description: 'Report and query tool selection quality. Tracks whether the right tool was picked for a given query. Modes: "report" (record feedback \u2014 was the tool pick correct or wrong?), "list" (recent feedback entries), "stats" (per-tool posterior accuracy from explicit feedback), "misroutes" (heuristic-detected advisory misroutes \u2014 T15b placeholder).',
+      inputSchema: {
+        mode: z24.enum(["report", "list", "stats", "misroutes"]).describe("Operation mode"),
+        correct: z24.boolean().optional().describe("Was the tool selection correct? (required for report mode)"),
+        tool_invocation_id: z24.number().optional().describe("ID of the tool invocation being evaluated (preferred \u2014 hydrates tool_name, query_context, session_id automatically)"),
+        tool_name: z24.string().optional().describe("Tool that was called (used when tool_invocation_id not available)"),
+        expected_tool: z24.string().optional().describe("Tool that should have been called instead"),
+        expected_category: z24.string().optional().describe("Category that should have been used instead"),
+        reason: z24.string().optional().describe("Optional reason for the feedback"),
+        days_back: z24.number().min(1).max(365).optional().describe("Lookback period for stats mode (default: 30)"),
+        limit: z24.number().min(1).max(200).optional().describe("Max entries for list mode (default: 50)")
+      }
+    },
+    async (args) => {
+      const stateDb2 = getStateDb3();
+      if (!stateDb2) {
+        return {
+          content: [{ type: "text", text: JSON.stringify({ error: "StateDb not available" }) }],
+          isError: true
+        };
+      }
+      switch (args.mode) {
+        case "report": {
+          if (args.correct === void 0) {
+            return {
+              content: [{ type: "text", text: JSON.stringify({ error: "correct (boolean) is required for report mode" }) }],
+              isError: true
+            };
+          }
+          if (!args.tool_invocation_id && !args.tool_name) {
+            return {
+              content: [{ type: "text", text: JSON.stringify({ error: "Either tool_invocation_id or tool_name is required" }) }],
+              isError: true
+            };
+          }
+          const id = recordToolSelectionFeedback(stateDb2, {
+            tool_invocation_id: args.tool_invocation_id,
+            tool_name: args.tool_name,
+            expected_tool: args.expected_tool,
+            expected_category: args.expected_category,
+            correct: args.correct
+          });
+          try {
+            const vaultName = getActiveScopeOrNull()?.name;
+            if (vaultName) {
+              const scores = getToolEffectivenessScores(stateDb2);
+              loadEffectivenessSnapshot(vaultName, scores);
+            }
+          } catch {
+          }
+          return {
+            content: [{ type: "text", text: JSON.stringify({
+              recorded: true,
+              feedback_id: id,
+              correct: args.correct,
+              tool_invocation_id: args.tool_invocation_id ?? null,
+              tool_name: args.tool_name ?? null,
+              expected_tool: args.expected_tool ?? null,
+              expected_category: args.expected_category ?? null
+            }, null, 2) }]
+          };
+        }
+        case "list": {
+          const entries = getToolSelectionList(stateDb2, args.limit ?? 50);
+          return {
+            content: [{ type: "text", text: JSON.stringify({
+              count: entries.length,
+              entries
+            }, null, 2) }]
+          };
+        }
+        case "stats": {
+          const stats = getToolSelectionStats(stateDb2, args.days_back ?? 30);
+          return {
+            content: [{ type: "text", text: JSON.stringify({
+              period_days: args.days_back ?? 30,
+              tools: stats
+            }, null, 2) }]
+          };
+        }
+        case "misroutes": {
+          const misroutes = getHeuristicMisroutes(stateDb2, args.limit ?? 50);
+          return {
+            content: [{ type: "text", text: JSON.stringify({
+              count: misroutes.length,
+              misroutes: misroutes.map((m) => ({
+                id: m.id,
+                timestamp: m.timestamp,
+                tool_invocation_id: m.tool_invocation_id,
+                tool_name: m.tool_name,
+                query_context: m.query_context,
+                expected_category: m.expected_category,
+                rule_id: m.rule_id,
+                rule_version: m.rule_version
+              }))
+            }, null, 2) }]
+          };
+        }
+        default:
+          return {
+            content: [{ type: "text", text: JSON.stringify({ error: `Unknown mode: ${args.mode}` }) }],
+            isError: true
+          };
+      }
+    }
+  );
+}
+
+// src/core/shared/misrouteDetection.ts
+var CATCH_ALL_TOOLS = /* @__PURE__ */ new Set(["search", "brief"]);
+var MISROUTE_RULES = [
+  {
+    ruleId: "temporal-via-wrong-cat",
+    ruleVersion: 1,
+    patterns: [/\b(history|timeline|timelines|evolution|stale notes?|around date|weekly review|monthly review|quarterly review)\b/i],
+    expectedCategory: "temporal",
+    description: "temporal query routed to non-temporal tool"
+  },
+  {
+    ruleId: "graph-via-wrong-cat",
+    ruleVersion: 1,
+    patterns: [/\b(backlinks?|forward links?|connections?|link path|hubs?|orphans?|clusters?|bridges?)\b/i],
+    expectedCategory: "graph",
+    description: "graph query routed to non-graph tool"
+  },
+  {
+    ruleId: "schema-via-wrong-cat",
+    ruleVersion: 1,
+    patterns: [/\b(schema|schemas|frontmatter conventions?|rename field|rename tag|migrate)\b/i],
+    expectedCategory: "schema",
+    description: "schema query routed to non-schema tool"
+  },
+  {
+    ruleId: "wikilinks-via-wrong-cat",
+    ruleVersion: 1,
+    patterns: [/\b(wikilinks?|link suggestions?|stubs?|unlinked mentions?)\b/i],
+    expectedCategory: "wikilinks",
+    description: "wikilink query routed to non-wikilink tool"
+  }
+];
+function detectMisroute(toolName, queryContext) {
+  if (!queryContext || !queryContext.trim()) return null;
+  if (CATCH_ALL_TOOLS.has(toolName)) return null;
+  const toolCategory = TOOL_CATEGORY[toolName];
+  if (!toolCategory) return null;
+  for (const rule of MISROUTE_RULES) {
+    if (toolCategory === rule.expectedCategory) continue;
+    if (rule.patterns.some((p) => p.test(queryContext))) {
+      return {
+        expectedCategory: rule.expectedCategory,
+        ruleId: rule.ruleId,
+        ruleVersion: rule.ruleVersion,
+        description: rule.description
+      };
+    }
+  }
+  return null;
+}
+function recordHeuristicMisroute(stateDb2, toolInvocationId, detection) {
+  stateDb2.db.prepare(`
+    INSERT INTO tool_selection_feedback
+      (timestamp, tool_invocation_id, tool_name, query_context, expected_category, correct, source, rule_id, rule_version, session_id)
+    SELECT
+      ?, id, tool_name, query_context, ?, NULL, 'heuristic', ?, ?, session_id
+    FROM tool_invocations
+    WHERE id = ?
+  `).run(
+    Date.now(),
+    detection.expectedCategory,
+    detection.ruleId,
+    detection.ruleVersion,
+    toolInvocationId
+  );
+}
+
 // src/tools/write/corrections.ts
 init_corrections();
-import { z as z24 } from "zod";
+import { z as z25 } from "zod";
 function registerCorrectionTools(server2, getStateDb3) {
   server2.tool(
     "vault_record_correction",
     'Record a persistent correction (e.g., "that link is wrong", "undo that"). Survives across sessions.',
     {
-      correction_type: z24.enum(["wrong_link", "wrong_entity", "wrong_category", "general"]).describe("Type of correction"),
-      description: z24.string().describe("What went wrong and what should be done"),
-      entity: z24.string().optional().describe("Entity name (if correction is about a specific entity)"),
-      note_path: z24.string().optional().describe("Note path (if correction is about a specific note)")
+      correction_type: z25.enum(["wrong_link", "wrong_entity", "wrong_category", "general"]).describe("Type of correction"),
+      description: z25.string().describe("What went wrong and what should be done"),
+      entity: z25.string().optional().describe("Entity name (if correction is about a specific entity)"),
+      note_path: z25.string().optional().describe("Note path (if correction is about a specific note)")
     },
     async ({ correction_type, description, entity, note_path }) => {
       const stateDb2 = getStateDb3();
@@ -21693,9 +23116,9 @@ function registerCorrectionTools(server2, getStateDb3) {
     "vault_list_corrections",
     "List recorded corrections, optionally filtered by status or entity.",
     {
-      status: z24.enum(["pending", "applied", "dismissed"]).optional().describe("Filter by status"),
-      entity: z24.string().optional().describe("Filter by entity name"),
-      limit: z24.number().min(1).max(200).default(50).describe("Max entries to return")
+      status: z25.enum(["pending", "applied", "dismissed"]).optional().describe("Filter by status"),
+      entity: z25.string().optional().describe("Filter by entity name"),
+      limit: z25.number().min(1).max(200).default(50).describe("Max entries to return")
     },
     async ({ status, entity, limit }) => {
       const stateDb2 = getStateDb3();
@@ -21721,8 +23144,8 @@ function registerCorrectionTools(server2, getStateDb3) {
     "vault_resolve_correction",
     "Resolve a correction by marking it as applied or dismissed.",
     {
-      correction_id: z24.number().describe("ID of the correction to resolve"),
-      status: z24.enum(["applied", "dismissed"]).describe("New status")
+      correction_id: z25.number().describe("ID of the correction to resolve"),
+      status: z25.enum(["applied", "dismissed"]).describe("New status")
     },
     async ({ correction_id, status }) => {
       const stateDb2 = getStateDb3();
@@ -21754,30 +23177,30 @@ function registerCorrectionTools(server2, getStateDb3) {
 }
 
 // src/tools/write/memory.ts
-import { z as z25 } from "zod";
+import { z as z26 } from "zod";
 function registerMemoryTools(server2, getStateDb3) {
   server2.tool(
     "memory",
     "Store, retrieve, search, and manage agent working memory. Actions: store, get, search, list, forget, summarize_session.",
     {
-      action: z25.enum(["store", "get", "search", "list", "forget", "summarize_session"]).describe("Action to perform"),
+      action: z26.enum(["store", "get", "search", "list", "forget", "summarize_session"]).describe("Action to perform"),
       // store params
-      key: z25.string().optional().describe('Memory key (e.g., "user.pref.theme", "project.x.deadline")'),
-      value: z25.string().optional().describe("The fact/preference/observation to store (up to 2000 chars)"),
-      type: z25.enum(["fact", "preference", "observation", "summary"]).optional().describe("Memory type"),
-      entity: z25.string().optional().describe("Primary entity association"),
-      confidence: z25.number().min(0).max(1).optional().describe("Confidence level (0-1, default 1.0)"),
-      ttl_days: z25.number().min(1).optional().describe("Time-to-live in days (null = permanent)"),
+      key: z26.string().optional().describe('Memory key (e.g., "user.pref.theme", "project.x.deadline")'),
+      value: z26.string().optional().describe("The fact/preference/observation to store (up to 2000 chars)"),
+      type: z26.enum(["fact", "preference", "observation", "summary"]).optional().describe("Memory type"),
+      entity: z26.string().optional().describe("Primary entity association"),
+      confidence: z26.number().min(0).max(1).optional().describe("Confidence level (0-1, default 1.0)"),
+      ttl_days: z26.number().min(1).optional().describe("Time-to-live in days (null = permanent)"),
       // search params
-      query: z25.string().optional().describe("FTS5 search query"),
+      query: z26.string().optional().describe("FTS5 search query"),
       // list/search params
-      limit: z25.number().min(1).max(200).optional().describe("Max results to return"),
+      limit: z26.number().min(1).max(200).optional().describe("Max results to return"),
       // summarize_session params
-      session_id: z25.string().optional().describe("Session ID for summarize_session"),
-      summary: z25.string().optional().describe("Session summary text"),
-      topics: z25.array(z25.string()).optional().describe("Topics discussed in session"),
-      notes_modified: z25.array(z25.string()).optional().describe("Note paths modified during session"),
-      tool_count: z25.number().optional().describe("Number of tool calls in session")
+      session_id: z26.string().optional().describe("Session ID for summarize_session"),
+      summary: z26.string().optional().describe("Session summary text"),
+      topics: z26.array(z26.string()).optional().describe("Topics discussed in session"),
+      notes_modified: z26.array(z26.string()).optional().describe("Note paths modified during session"),
+      tool_count: z26.number().optional().describe("Number of tool calls in session")
     },
     async (args) => {
       const stateDb2 = getStateDb3();
@@ -21974,7 +23397,7 @@ function registerMemoryTools(server2, getStateDb3) {
 }
 
 // src/tools/read/brief.ts
-import { z as z26 } from "zod";
+import { z as z27 } from "zod";
 init_corrections();
 function estimateTokens2(value) {
   const str = JSON.stringify(value);
@@ -22116,8 +23539,8 @@ function registerBriefTools(server2, getStateDb3) {
     "brief",
     "Get a startup context briefing: recent sessions, active entities, memories, pending corrections, and vault stats. Call at conversation start.",
     {
-      max_tokens: z26.number().optional().describe("Token budget (lower-priority sections truncated first)"),
-      focus: z26.string().optional().describe("Focus entity or topic (filters content)")
+      max_tokens: z27.number().optional().describe("Token budget (lower-priority sections truncated first)"),
+      focus: z27.string().optional().describe("Focus entity or topic (filters content)")
     },
     async (args) => {
       const stateDb2 = getStateDb3();
@@ -22168,28 +23591,29 @@ function registerBriefTools(server2, getStateDb3) {
 }
 
 // src/tools/write/config.ts
-import { z as z27 } from "zod";
+import { z as z28 } from "zod";
 import { saveFlywheelConfigToDb as saveFlywheelConfigToDb2 } from "@velvetmonkey/vault-core";
 var VALID_CONFIG_KEYS = {
-  vault_name: z27.string(),
-  exclude: z27.array(z27.string()),
+  vault_name: z28.string(),
+  exclude: z28.array(z28.string()),
   /** @deprecated Use `exclude` instead */
-  exclude_task_tags: z27.array(z27.string()),
+  exclude_task_tags: z28.array(z28.string()),
   /** @deprecated Use `exclude` instead */
-  exclude_analysis_tags: z27.array(z27.string()),
+  exclude_analysis_tags: z28.array(z28.string()),
   /** @deprecated Use `exclude` instead */
-  exclude_entities: z27.array(z27.string()),
-  exclude_entity_folders: z27.array(z27.string()),
-  wikilink_strictness: z27.enum(["conservative", "balanced", "aggressive"]),
-  implicit_detection: z27.boolean(),
-  implicit_patterns: z27.array(z27.string()),
-  adaptive_strictness: z27.boolean(),
-  proactive_linking: z27.boolean(),
-  proactive_min_score: z27.number(),
-  proactive_max_per_file: z27.number(),
-  proactive_max_per_day: z27.number(),
-  custom_categories: z27.record(z27.string(), z27.object({
-    type_boost: z27.number().optional()
+  exclude_entities: z28.array(z28.string()),
+  exclude_entity_folders: z28.array(z28.string()),
+  wikilink_strictness: z28.enum(["conservative", "balanced", "aggressive"]),
+  implicit_detection: z28.boolean(),
+  implicit_patterns: z28.array(z28.string()),
+  adaptive_strictness: z28.boolean(),
+  proactive_linking: z28.boolean(),
+  proactive_min_score: z28.number(),
+  proactive_max_per_file: z28.number(),
+  proactive_max_per_day: z28.number(),
+  tool_tier_override: z28.enum(["auto", "full", "minimal"]),
+  custom_categories: z28.record(z28.string(), z28.object({
+    type_boost: z28.number().optional()
   }))
 };
 function registerConfigTools(server2, getConfig2, setConfig, getStateDb3) {
@@ -22199,9 +23623,9 @@ function registerConfigTools(server2, getConfig2, setConfig, getStateDb3) {
       title: "Flywheel Config",
       description: 'Read or update Flywheel configuration.\n- "get": Returns the current FlywheelConfig\n- "set": Updates a single config key and returns the updated config\n\nExample: flywheel_config({ mode: "get" })\nExample: flywheel_config({ mode: "set", key: "exclude", value: ["#habit", "#daily", "walk", "vitamins"] })',
       inputSchema: {
-        mode: z27.enum(["get", "set"]).describe("Operation mode"),
-        key: z27.string().optional().describe("Config key to update (required for set mode)"),
-        value: z27.unknown().optional().describe("New value for the key (required for set mode)")
+        mode: z28.enum(["get", "set"]).describe("Operation mode"),
+        key: z28.string().optional().describe("Config key to update (required for set mode)"),
+        value: z28.unknown().optional().describe("New value for the key (required for set mode)")
       }
     },
     async ({ mode, key, value }) => {
@@ -22257,7 +23681,7 @@ function registerConfigTools(server2, getConfig2, setConfig, getStateDb3) {
 // src/tools/write/enrich.ts
 init_wikilinks();
 init_wikilinkFeedback();
-import { z as z28 } from "zod";
+import { z as z29 } from "zod";
 import * as fs32 from "fs/promises";
 import * as path35 from "path";
 import { scanVaultEntities as scanVaultEntities3, SCHEMA_VERSION as SCHEMA_VERSION2 } from "@velvetmonkey/vault-core";
@@ -22562,10 +23986,10 @@ function registerInitTools(server2, getVaultPath, getStateDb3) {
     "vault_init",
     `Initialize vault for Flywheel. Modes: "status" (check what's ready/missing), "run" (execute missing init steps), "enrich" (scan notes with zero wikilinks and apply entity links).`,
     {
-      mode: z28.enum(["status", "run", "enrich"]).default("status").describe("Operation mode (default: status)"),
-      dry_run: z28.boolean().default(true).describe("For enrich mode: preview without modifying files (default: true)"),
-      batch_size: z28.number().default(50).describe("For enrich mode: max notes per invocation (default: 50)"),
-      offset: z28.number().default(0).describe("For enrich mode: skip this many eligible notes (for pagination)")
+      mode: z29.enum(["status", "run", "enrich"]).default("status").describe("Operation mode (default: status)"),
+      dry_run: z29.boolean().default(true).describe("For enrich mode: preview without modifying files (default: true)"),
+      batch_size: z29.number().default(50).describe("For enrich mode: max notes per invocation (default: 50)"),
+      offset: z29.number().default(0).describe("For enrich mode: skip this many eligible notes (for pagination)")
     },
     async ({ mode, dry_run, batch_size, offset }) => {
       const stateDb2 = getStateDb3();
@@ -22592,18 +24016,18 @@ function registerInitTools(server2, getVaultPath, getStateDb3) {
 }
 
 // src/tools/read/metrics.ts
-import { z as z29 } from "zod";
+import { z as z30 } from "zod";
 function registerMetricsTools(server2, getIndex, getStateDb3) {
   server2.registerTool(
     "vault_growth",
     {
       title: "Vault Growth",
-      description: 'Track vault growth over time. Modes: "current" (live snapshot), "history" (time series), "trends" (deltas vs N days ago), "index_activity" (rebuild history). Tracks 11 metrics: note_count, link_count, orphan_count, tag_count, entity_count, avg_links_per_note, link_density, connected_ratio, wikilink_accuracy, wikilink_feedback_volume, wikilink_suppressed_count.',
+      description: 'How is the vault growing? Tracks vault growth over time. Modes: "current" (live snapshot), "history" (time series), "trends" (deltas vs N days ago), "index_activity" (rebuild history). Tracks 11 metrics: note_count, link_count, orphan_count, tag_count, entity_count, avg_links_per_note, link_density, connected_ratio, wikilink_accuracy, wikilink_feedback_volume, wikilink_suppressed_count.',
       inputSchema: {
-        mode: z29.enum(["current", "history", "trends", "index_activity"]).describe("Query mode: current snapshot, historical time series, trend analysis, or index rebuild activity"),
-        metric: z29.string().optional().describe('Filter to specific metric (e.g., "note_count"). Omit for all metrics.'),
-        days_back: z29.number().optional().describe("Number of days to look back for history/trends (default: 30)"),
-        limit: z29.number().optional().describe("Number of recent events to return for index_activity mode (default: 20)")
+        mode: z30.enum(["current", "history", "trends", "index_activity"]).describe("Query mode: current snapshot, historical time series, trend analysis, or index rebuild activity"),
+        metric: z30.string().optional().describe('Filter to specific metric (e.g., "note_count"). Omit for all metrics.'),
+        days_back: z30.number().optional().describe("Number of days to look back for history/trends (default: 30)"),
+        limit: z30.number().optional().describe("Number of recent events to return for index_activity mode (default: 20)")
       }
     },
     async ({ mode, metric, days_back, limit: eventLimit }) => {
@@ -22676,18 +24100,18 @@ function registerMetricsTools(server2, getIndex, getStateDb3) {
 }
 
 // src/tools/read/activity.ts
-import { z as z30 } from "zod";
+import { z as z31 } from "zod";
 function registerActivityTools(server2, getStateDb3, getSessionId2) {
   server2.registerTool(
     "vault_activity",
     {
       title: "Vault Activity",
-      description: 'Track tool usage patterns and session activity. Modes:\n- "session": Current session summary (tools called, notes accessed)\n- "sessions": List of recent sessions\n- "note_access": Notes ranked by query frequency\n- "tool_usage": Tool usage patterns (most-used tools, avg duration)',
+      description: 'What tools have been used and what notes accessed? Tracks tool usage patterns and session activity. Modes:\n- "session": Current session summary (tools called, notes accessed)\n- "sessions": List of recent sessions\n- "note_access": Notes ranked by query frequency\n- "tool_usage": Tool usage patterns (most-used tools, avg duration)',
       inputSchema: {
-        mode: z30.enum(["session", "sessions", "note_access", "tool_usage"]).describe("Activity query mode"),
-        session_id: z30.string().optional().describe("Specific session ID (for session mode, defaults to current)"),
-        days_back: z30.number().optional().describe("Number of days to look back (default: 30)"),
-        limit: z30.number().optional().describe("Maximum results to return (default: 20)")
+        mode: z31.enum(["session", "sessions", "note_access", "tool_usage"]).describe("Activity query mode"),
+        session_id: z31.string().optional().describe("Specific session ID (for session mode, defaults to current)"),
+        days_back: z31.number().optional().describe("Number of days to look back (default: 30)"),
+        limit: z31.number().optional().describe("Maximum results to return (default: 20)")
       }
     },
     async ({ mode, session_id, days_back, limit: resultLimit }) => {
@@ -22754,7 +24178,7 @@ function registerActivityTools(server2, getStateDb3, getSessionId2) {
 }
 
 // src/tools/read/similarity.ts
-import { z as z31 } from "zod";
+import { z as z32 } from "zod";
 
 // src/core/read/similarity.ts
 import * as fs33 from "fs";
@@ -22965,9 +24389,9 @@ function registerSimilarityTools(server2, getIndex, getVaultPath, getStateDb3) {
       title: "Find Similar Notes",
       description: "Find notes similar to a given note using FTS5 keyword matching. When embeddings have been built (via init_semantic), automatically uses hybrid ranking (BM25 + embedding similarity via Reciprocal Rank Fusion). Already-linked notes are automatically excluded.",
       inputSchema: {
-        path: z31.string().describe('Path to the source note (relative to vault root, e.g. "projects/alpha.md")'),
-        limit: z31.number().optional().describe("Maximum number of similar notes to return (default: 10)"),
-        diversity: z31.number().min(0).max(1).optional().describe("Relevance vs diversity tradeoff (0=max diversity, 1=pure relevance, default: 0.7)")
+        path: z32.string().describe('Path to the source note (relative to vault root, e.g. "projects/alpha.md")'),
+        limit: z32.number().optional().describe("Maximum number of similar notes to return (default: 10)"),
+        diversity: z32.number().min(0).max(1).optional().describe("Relevance vs diversity tradeoff (0=max diversity, 1=pure relevance, default: 0.7)")
       }
     },
     async ({ path: path39, limit, diversity }) => {
@@ -23012,7 +24436,7 @@ function registerSimilarityTools(server2, getIndex, getVaultPath, getStateDb3) {
 
 // src/tools/read/semantic.ts
 init_embeddings();
-import { z as z32 } from "zod";
+import { z as z33 } from "zod";
 import { getAllEntitiesFromDb as getAllEntitiesFromDb4 } from "@velvetmonkey/vault-core";
 function registerSemanticTools(server2, getVaultPath, getStateDb3) {
   server2.registerTool(
@@ -23021,7 +24445,7 @@ function registerSemanticTools(server2, getVaultPath, getStateDb3) {
       title: "Initialize Semantic Search",
       description: "Download the embedding model and build semantic search index for this vault. After running, search and find_similar automatically use hybrid ranking (BM25 + semantic). Run once per vault \u2014 subsequent calls verify health and skip already-embedded notes unless force=true.",
       inputSchema: {
-        force: z32.boolean().optional().describe(
+        force: z33.boolean().optional().describe(
           "Clear and rebuild all embeddings from scratch (default: false)"
         )
       }
@@ -23099,6 +24523,16 @@ function registerSemanticTools(server2, getVaultPath, getStateDb3) {
             }
           });
           loadEntityEmbeddingsToMemory();
+          saveInferredCategories(classifyUncategorizedEntities(
+            allEntities.map((entity) => ({
+              entity: {
+                name: entity.name,
+                path: entity.path,
+                aliases: entity.aliases
+              },
+              category: entity.category
+            }))
+          ));
         }
       } catch (err) {
         console.error("[Semantic] Entity embeddings failed:", err instanceof Error ? err.message : err);
@@ -23129,7 +24563,7 @@ function registerSemanticTools(server2, getVaultPath, getStateDb3) {
 
 // src/tools/read/merges.ts
 init_levenshtein();
-import { z as z33 } from "zod";
+import { z as z34 } from "zod";
 import { getAllEntitiesFromDb as getAllEntitiesFromDb5, getDismissedMergePairs, recordMergeDismissal } from "@velvetmonkey/vault-core";
 function normalizeName(name) {
   return name.toLowerCase().replace(/[.\-_]/g, "").replace(/js$/, "").replace(/ts$/, "");
@@ -23139,7 +24573,7 @@ function registerMergeTools2(server2, getStateDb3) {
     "suggest_entity_merges",
     "Find potential duplicate entities that could be merged based on name similarity",
     {
-      limit: z33.number().optional().default(50).describe("Maximum number of suggestions to return")
+      limit: z34.number().optional().default(50).describe("Maximum number of suggestions to return")
     },
     async ({ limit }) => {
       const stateDb2 = getStateDb3();
@@ -23241,11 +24675,11 @@ function registerMergeTools2(server2, getStateDb3) {
     "dismiss_merge_suggestion",
     "Permanently dismiss a merge suggestion so it never reappears",
     {
-      source_path: z33.string().describe("Path of the source entity"),
-      target_path: z33.string().describe("Path of the target entity"),
-      source_name: z33.string().describe("Name of the source entity"),
-      target_name: z33.string().describe("Name of the target entity"),
-      reason: z33.string().describe("Original suggestion reason")
+      source_path: z34.string().describe("Path of the source entity"),
+      target_path: z34.string().describe("Path of the target entity"),
+      source_name: z34.string().describe("Name of the source entity"),
+      target_name: z34.string().describe("Name of the target entity"),
+      reason: z34.string().describe("Original suggestion reason")
     },
     async ({ source_path, target_path, source_name, target_name, reason }) => {
       const stateDb2 = getStateDb3();
@@ -23264,7 +24698,7 @@ function registerMergeTools2(server2, getStateDb3) {
 }
 
 // src/tools/read/temporalAnalysis.ts
-import { z as z34 } from "zod";
+import { z as z35 } from "zod";
 init_wikilinks();
 function formatDate3(d) {
   return d.toISOString().split("T")[0];
@@ -23788,11 +25222,11 @@ function registerTemporalAnalysisTools(server2, getIndex, getVaultPath, getState
     "get_context_around_date",
     {
       title: "Context Around Date",
-      description: "Reconstruct what was happening in the vault around a specific date. Shows modified/created notes, active entities, wikilink activity, and file moves within a time window.",
+      description: "What was happening around a specific date? Shows modified/created notes, active entities, wikilink activity, and file moves within a time window.",
       inputSchema: {
-        date: z34.string().describe("Center date in YYYY-MM-DD format"),
-        window_days: z34.coerce.number().default(3).describe("Days before and after the center date (default 3 = 7-day window)"),
-        limit: z34.coerce.number().default(50).describe("Maximum number of notes to return")
+        date: z35.string().describe("Center date in YYYY-MM-DD format"),
+        window_days: z35.coerce.number().default(3).describe("Days before and after the center date (default 3 = 7-day window)"),
+        limit: z35.coerce.number().default(50).describe("Maximum number of notes to return")
       }
     },
     async ({ date, window_days, limit: requestedLimit }) => {
@@ -23805,14 +25239,14 @@ function registerTemporalAnalysisTools(server2, getIndex, getVaultPath, getState
     "predict_stale_notes",
     {
       title: "Predict Stale Notes",
-      description: "Multi-signal staleness prediction. Scores notes by importance (backlinks, hub score, tasks, status) and staleness risk (age, entity disconnect, task urgency). Returns concrete recommendations: archive, update, review, or low_priority.",
+      description: "Which notes need attention? Scores notes by importance (backlinks, hub score, tasks, status) and staleness risk (age, entity disconnect, task urgency). Returns concrete recommendations: archive, update, review, or low_priority.",
       inputSchema: {
-        days: z34.coerce.number().default(30).describe("Notes not modified in this many days (default 30)"),
-        min_importance: z34.coerce.number().default(0).describe("Filter by minimum importance score 0-100 (default 0)"),
-        include_recommendations: z34.boolean().default(true).describe("Include action recommendations (default true)"),
-        folder: z34.string().optional().describe("Limit to notes in this folder"),
-        limit: z34.coerce.number().default(30).describe("Maximum results to return (default 30)"),
-        offset: z34.coerce.number().default(0).describe("Results to skip for pagination (default 0)")
+        days: z35.coerce.number().default(30).describe("Notes not modified in this many days (default 30)"),
+        min_importance: z35.coerce.number().default(0).describe("Filter by minimum importance score 0-100 (default 0)"),
+        include_recommendations: z35.boolean().default(true).describe("Include action recommendations (default true)"),
+        folder: z35.string().optional().describe("Limit to notes in this folder"),
+        limit: z35.coerce.number().default(30).describe("Maximum results to return (default 30)"),
+        offset: z35.coerce.number().default(0).describe("Results to skip for pagination (default 0)")
       }
     },
     async ({ days, min_importance, include_recommendations, folder, limit: requestedLimit, offset }) => {
@@ -23834,11 +25268,11 @@ function registerTemporalAnalysisTools(server2, getIndex, getVaultPath, getState
     "track_concept_evolution",
     {
       title: "Track Concept Evolution",
-      description: "Timeline of how an entity has evolved: link additions/removals, feedback events, category changes, co-occurrence shifts. Shows current state, chronological event history, link durability stats, and top co-occurrence neighbors.",
+      description: "How has an entity changed over time? Timeline of link additions/removals, feedback events, category changes, co-occurrence shifts. Shows current state, chronological event history, link durability stats, and top co-occurrence neighbors.",
       inputSchema: {
-        entity: z34.string().describe("Entity name (case-insensitive)"),
-        days_back: z34.coerce.number().default(90).describe("How far back to look (default 90 days)"),
-        include_cooccurrence: z34.boolean().default(true).describe("Include co-occurrence neighbors (default true)")
+        entity: z35.string().describe("Entity name (case-insensitive)"),
+        days_back: z35.coerce.number().default(90).describe("How far back to look (default 90 days)"),
+        include_cooccurrence: z35.boolean().default(true).describe("Include co-occurrence neighbors (default true)")
       }
     },
     async ({ entity, days_back, include_cooccurrence }) => {
@@ -23856,12 +25290,12 @@ function registerTemporalAnalysisTools(server2, getIndex, getVaultPath, getState
     "temporal_summary",
     {
       title: "Temporal Summary",
-      description: "Generate a vault pulse report for a time period. Composes context, staleness prediction, and concept evolution into a single summary. Shows activity snapshot, entity momentum, and maintenance alerts. Use for weekly/monthly/quarterly reviews.",
+      description: "Summarize vault activity for a time period (week, month, quarter). Composes context, staleness prediction, and concept evolution into a single summary. Shows activity snapshot, entity momentum, and maintenance alerts. Use for weekly/monthly/quarterly reviews.",
       inputSchema: {
-        start_date: z34.string().describe("Start of period in YYYY-MM-DD format"),
-        end_date: z34.string().describe("End of period in YYYY-MM-DD format"),
-        focus_entities: z34.array(z34.string()).optional().describe("Specific entities to track evolution for (default: top 5 active entities in period)"),
-        limit: z34.coerce.number().default(50).describe("Maximum notes to include in context snapshot")
+        start_date: z35.string().describe("Start of period in YYYY-MM-DD format"),
+        end_date: z35.string().describe("End of period in YYYY-MM-DD format"),
+        focus_entities: z35.array(z35.string()).optional().describe("Specific entities to track evolution for (default: top 5 active entities in period)"),
+        limit: z35.coerce.number().default(50).describe("Maximum notes to include in context snapshot")
       }
     },
     async ({ start_date, end_date, focus_entities, limit: requestedLimit }) => {
@@ -23880,15 +25314,15 @@ function registerTemporalAnalysisTools(server2, getIndex, getVaultPath, getState
 }
 
 // src/tools/read/sessionHistory.ts
-import { z as z35 } from "zod";
+import { z as z36 } from "zod";
 function registerSessionHistoryTools(server2, getStateDb3) {
   server2.tool(
     "vault_session_history",
     "View session history. Without session_id: lists recent sessions. With session_id: returns chronological tool invocations, notes accessed, and timing. Hierarchical sessions supported (parent ID includes child sessions).",
     {
-      session_id: z35.string().optional().describe("Session ID for detail view. Omit for recent sessions list."),
-      include_children: z35.boolean().optional().describe("Include child sessions (default: true)"),
-      limit: z35.number().min(1).max(500).optional().describe("Max invocations to return in detail view (default: 200)")
+      session_id: z36.string().optional().describe("Session ID for detail view. Omit for recent sessions list."),
+      include_children: z36.boolean().optional().describe("Include child sessions (default: true)"),
+      limit: z36.number().min(1).max(500).optional().describe("Max invocations to return in detail view (default: 200)")
     },
     async (args) => {
       const stateDb2 = getStateDb3();
@@ -23915,12 +25349,14 @@ function registerSessionHistoryTools(server2, getStateDb3) {
           content: [{ type: "text", text: JSON.stringify({
             ...detail.summary,
             invocations: detail.invocations.map((inv) => ({
+              invocation_id: inv.id,
               tool: inv.tool_name,
               timestamp: inv.timestamp,
               session_id: inv.session_id,
               note_paths: inv.note_paths,
               duration_ms: inv.duration_ms,
-              success: inv.success
+              success: inv.success,
+              query_context: inv.query_context
             }))
           }, null, 2) }]
         };
@@ -23936,7 +25372,7 @@ function registerSessionHistoryTools(server2, getStateDb3) {
 }
 
 // src/tools/read/entityHistory.ts
-import { z as z36 } from "zod";
+import { z as z37 } from "zod";
 
 // src/core/read/entityHistory.ts
 function normalizeTimestamp(ts) {
@@ -24094,8 +25530,8 @@ function registerEntityHistoryTools(server2, getStateDb3) {
     "vault_entity_history",
     "Get a unified timeline of everything about an entity: when it was linked, feedback received, suggestion scores, edge weight changes, metadata mutations, memories, and corrections. Sorted chronologically with pagination.",
     {
-      entity_name: z36.string().describe("Entity name to query (case-insensitive)"),
-      event_types: z36.array(z36.enum([
+      entity_name: z37.string().describe("Entity name to query (case-insensitive)"),
+      event_types: z37.array(z37.enum([
         "application",
         "feedback",
         "suggestion",
@@ -24104,10 +25540,10 @@ function registerEntityHistoryTools(server2, getStateDb3) {
         "memory",
         "correction"
       ])).optional().describe("Filter to specific event types. Omit for all types."),
-      start_date: z36.string().optional().describe("Start date (YYYY-MM-DD) for date range filter"),
-      end_date: z36.string().optional().describe("End date (YYYY-MM-DD) for date range filter"),
-      limit: z36.number().min(1).max(200).optional().describe("Max events to return (default: 50)"),
-      offset: z36.number().min(0).optional().describe("Offset for pagination (default: 0)")
+      start_date: z37.string().optional().describe("Start date (YYYY-MM-DD) for date range filter"),
+      end_date: z37.string().optional().describe("End date (YYYY-MM-DD) for date range filter"),
+      limit: z37.number().min(1).max(200).optional().describe("Max events to return (default: 50)"),
+      offset: z37.number().min(0).optional().describe("Offset for pagination (default: 0)")
     },
     async (args) => {
       const stateDb2 = getStateDb3();
@@ -24139,7 +25575,7 @@ function registerEntityHistoryTools(server2, getStateDb3) {
 }
 
 // src/tools/read/learningReport.ts
-import { z as z37 } from "zod";
+import { z as z38 } from "zod";
 
 // src/core/read/learningReport.ts
 function isoDate(d) {
@@ -24248,6 +25684,10 @@ function getLearningReport(stateDb2, entityCount, linkCount, daysBack = 7, compa
     funnel: queryFunnel(stateDb2, bounds.start, bounds.end, bounds.startMs, bounds.endMs),
     graph: { link_count: linkCount, entity_count: entityCount }
   };
+  const toolSelection = getToolSelectionReport(stateDb2, daysBack);
+  if (toolSelection) {
+    report.tool_selection = toolSelection;
+  }
   if (compare) {
     const prevEnd = new Date(now);
     prevEnd.setDate(prevEnd.getDate() - daysBack);
@@ -24275,8 +25715,8 @@ function registerLearningReportTools(server2, getIndex, getStateDb3) {
     "flywheel_learning_report",
     "Get a narrative report of the flywheel auto-linking system's learning progress. Shows: applications by day, feedback (positive/negative), survival rate, top rejected entities, suggestion funnel (evaluations \u2192 applications \u2192 survivals), and graph growth. Use compare=true for period-over-period deltas.",
     {
-      days_back: z37.number().min(1).max(365).optional().describe("Analysis window in days (default: 7). Use 1 for today, 2 for last 48h, etc."),
-      compare: z37.boolean().optional().describe("Include comparison with the preceding equal-length period (default: false)")
+      days_back: z38.number().min(1).max(365).optional().describe("Analysis window in days (default: 7). Use 1 for today, 2 for last 48h, etc."),
+      compare: z38.boolean().optional().describe("Include comparison with the preceding equal-length period (default: false)")
     },
     async (args) => {
       const stateDb2 = getStateDb3();
@@ -24303,7 +25743,7 @@ function registerLearningReportTools(server2, getIndex, getStateDb3) {
 }
 
 // src/tools/read/calibrationExport.ts
-import { z as z38 } from "zod";
+import { z as z39 } from "zod";
 
 // src/core/read/calibrationExport.ts
 init_wikilinkFeedback();
@@ -24311,7 +25751,9 @@ init_embeddings();
 import { createHash as createHash3 } from "node:crypto";
 var LAYER_KEYS = [
   "contentMatch",
+  "fuzzyMatch",
   "cooccurrenceBoost",
+  "rarityAdjustment",
   "typeBoost",
   "contextBoost",
   "recencyBoost",
@@ -24518,7 +25960,7 @@ function queryCooccurrenceAnalysis(stateDb2, startMs, startIso, endIso) {
     }
     totalCount++;
     coocSum += bd.cooccurrenceBoost ?? 0;
-    if ((bd.contentMatch ?? 0) === 0 && (bd.cooccurrenceBoost ?? 0) > 0) {
+    if ((bd.contentMatch ?? 0) === 0 && (bd.fuzzyMatch ?? 0) === 0 && (bd.cooccurrenceBoost ?? 0) > 0) {
       coocOnlyCount++;
       if (r.status != null) {
         coocOnlyApplied++;
@@ -24596,8 +26038,8 @@ function registerCalibrationExportTools(server2, getIndex, getStateDb3, getConfi
     "flywheel_calibration_export",
     "Export anonymized aggregate scoring data for cross-vault algorithm calibration. No entity names, note paths, or content \u2014 safe to share. Includes: suggestion funnel, per-layer contribution averages, survival rates by entity category, score distribution, suppression stats, recency/co-occurrence effectiveness, and threshold sweep.",
     {
-      days_back: z38.number().min(1).max(365).optional().describe("Analysis window in days (default: 30)"),
-      include_vault_id: z38.boolean().optional().describe("Include anonymous vault ID for longitudinal tracking (default: true)")
+      days_back: z39.number().min(1).max(365).optional().describe("Analysis window in days (default: 30)"),
+      include_vault_id: z39.boolean().optional().describe("Include anonymous vault ID for longitudinal tracking (default: true)")
     },
     async (args) => {
       const stateDb2 = getStateDb3();
@@ -24731,9 +26173,93 @@ function registerVaultResources(server2, getIndex) {
 var __trFilename = fileURLToPath(import.meta.url);
 var __trDirname = dirname5(__trFilename);
 var trPkg = JSON.parse(readFileSync5(join19(__trDirname, "../package.json"), "utf-8"));
-function applyToolGating(targetServer, categories, getDb4, registry, getVaultPath, vaultCallbacks) {
+var ACTIVATION_PATTERNS = [
+  {
+    category: "graph",
+    tier: 2,
+    patterns: [/\b(backlinks?|forward links?|connections?|link path|paths?|hubs?|orphans?|dead ends?|clusters?|bridges?)\b/i]
+  },
+  {
+    category: "wikilinks",
+    tier: 2,
+    patterns: [/\b(wikilinks?|link suggestions?|stubs?|unlinked mentions?|aliases?)\b/i]
+  },
+  {
+    category: "corrections",
+    tier: 2,
+    patterns: [/\b(corrections?|wrong links?|bad links?|mistakes?|fix(es|ing)?|errors?)\b/i]
+  },
+  {
+    category: "temporal",
+    tier: 2,
+    patterns: [/\b(history|timeline|timelines|evolution|stale notes?|around date|weekly review|monthly review|quarterly review)\b/i]
+  },
+  {
+    category: "diagnostics",
+    tier: 2,
+    patterns: [/\b(health|doctor|diagnostics?|status|config|configuration|pipeline|refresh index|reindex|logs?)\b/i]
+  },
+  {
+    category: "schema",
+    tier: 3,
+    patterns: [/\b(schema|schemas|frontmatter|metadata|conventions?|rename field|rename tag|migrate)\b/i]
+  },
+  {
+    category: "note-ops",
+    tier: 3,
+    patterns: [/\b(delete note|move note|rename note|merge entities|merge notes?)\b/i]
+  }
+];
+function getPatternSignals(raw) {
+  if (!raw) return [];
+  return ACTIVATION_PATTERNS.filter(({ patterns }) => patterns.some((pattern) => pattern.test(raw))).map(({ category, tier }) => ({ category, tier }));
+}
+async function getActivationSignals(toolName, params, searchMethod, toolTierMode2 = "off") {
+  if (toolName !== "search" && toolName !== "brief") return [];
+  if (!params || typeof params !== "object") return [];
+  const raw = [
+    typeof params.query === "string" ? params.query : "",
+    typeof params.focus === "string" ? params.focus : ""
+  ].filter(Boolean).join(" ");
+  if (!raw) return [];
+  const routingMode = getToolRoutingMode(toolTierMode2);
+  const patternSignals = routingMode !== "semantic" ? getPatternSignals(raw) : [];
+  let semanticSignals = [];
+  if (routingMode !== "pattern" && searchMethod === "hybrid" && hasToolRouting()) {
+    semanticSignals = await getSemanticActivations(raw);
+  }
+  if (routingMode === "semantic" && searchMethod !== "hybrid") {
+    return getPatternSignals(raw);
+  }
+  const categoryBest = /* @__PURE__ */ new Map();
+  for (const { category, tier } of [...patternSignals, ...semanticSignals]) {
+    const existing = categoryBest.get(category);
+    if (!existing || tier > existing) {
+      categoryBest.set(category, tier);
+    }
+  }
+  return Array.from(categoryBest.entries()).map(([category, tier]) => ({ category, tier }));
+}
+function extractSearchMethod(result) {
+  if (!result || typeof result !== "object") return void 0;
+  const content = result.content;
+  if (!Array.isArray(content) || content.length === 0) return void 0;
+  const first = content[0];
+  if (first?.type !== "text" || typeof first.text !== "string") return void 0;
+  try {
+    const parsed = JSON.parse(first.text);
+    if (typeof parsed.method === "string") return parsed.method;
+  } catch {
+  }
+  return void 0;
+}
+function applyToolGating(targetServer, categories, getDb4, registry, getVaultPath, vaultCallbacks, tierMode = "off", onTierStateChange) {
   let _registered = 0;
   let _skipped = 0;
+  let tierOverride = "auto";
+  const toolHandles = /* @__PURE__ */ new Map();
+  const activatedCategoryTiers = /* @__PURE__ */ new Map();
+  let controllerRef = null;
   function gate(name) {
     const category = TOOL_CATEGORY[name];
     if (!category) {
@@ -24748,6 +26274,70 @@ function applyToolGating(targetServer, categories, getDb4, registry, getVaultPat
     _registered++;
     return true;
   }
+  function enableCategory(category, tier) {
+    if (!categories.has(category)) return;
+    const previousTier = activatedCategoryTiers.get(category) ?? 0;
+    if (tier > previousTier) {
+      activatedCategoryTiers.set(category, tier);
+    }
+    refreshToolVisibility();
+  }
+  function shouldEnableTool(toolName) {
+    const tier = TOOL_TIER[toolName];
+    const category = TOOL_CATEGORY[toolName];
+    if (!tier || !category) return true;
+    if (!categories.has(category)) return false;
+    if (tierMode === "off") return true;
+    if (tierOverride === "full") return true;
+    if (tier === 1) return true;
+    if (tierOverride === "minimal") return false;
+    const activatedTier = activatedCategoryTiers.get(category) ?? 0;
+    return activatedTier >= tier;
+  }
+  function refreshToolVisibility() {
+    for (const [name, handle] of toolHandles) {
+      const enabled = shouldEnableTool(name);
+      if (enabled && !handle.enabled) {
+        handle.enable();
+      } else if (!enabled && handle.enabled) {
+        handle.disable();
+      }
+    }
+    if (controllerRef) {
+      onTierStateChange?.(controllerRef);
+    }
+  }
+  async function maybeActivateFromContext(toolName, params, searchMethod) {
+    if (tierMode !== "tiered" || tierOverride === "full") return;
+    for (const { category, tier } of await getActivationSignals(toolName, params, searchMethod, tierMode)) {
+      enableCategory(category, tier);
+    }
+  }
+  function ensureToolEnabledForDirectCall(toolName) {
+    if (tierMode !== "tiered") return;
+    const handle = toolHandles.get(toolName);
+    if (!handle || handle.enabled) return;
+    const category = TOOL_CATEGORY[toolName];
+    const tier = TOOL_TIER[toolName];
+    if (!category || !tier) return;
+    enableCategory(category, tier);
+  }
+  const MAX_QUERY_CONTEXT_LENGTH = 500;
+  const QUERY_CONTEXT_FIELDS = ["query", "focus", "analysis", "entity", "heading", "field", "date", "concept"];
+  function extractQueryContext(params) {
+    if (!params || typeof params !== "object") return void 0;
+    const p = params;
+    const parts = [];
+    for (const field of QUERY_CONTEXT_FIELDS) {
+      const val = p[field];
+      if (typeof val === "string" && val.trim()) {
+        parts.push(val.trim());
+      }
+    }
+    if (parts.length === 0) return void 0;
+    const joined = parts.join(" | ").replace(/\s+/g, " ");
+    return joined.length > MAX_QUERY_CONTEXT_LENGTH ? joined.slice(0, MAX_QUERY_CONTEXT_LENGTH) : joined;
+  }
   function wrapWithTracking(toolName, handler) {
     return async (...args) => {
       const start = Date.now();
@@ -24766,6 +26356,8 @@ function applyToolGating(targetServer, categories, getDb4, registry, getVaultPat
       }
       try {
         result = await handler(...args);
+        const searchMethod = extractSearchMethod(result);
+        await maybeActivateFromContext(toolName, params, searchMethod);
         return result;
       } catch (err) {
         success = false;
@@ -24801,15 +26393,26 @@ function applyToolGating(targetServer, categories, getDb4, registry, getVaultPat
               }
               if (totalBytes > 0) baselineTokens = Math.ceil(totalBytes / 4);
             }
-            recordToolInvocation(db4, {
+            const queryContext = extractQueryContext(params);
+            const invocationId = recordToolInvocation(db4, {
               tool_name: toolName,
               session_id: sessionId,
               note_paths: notePaths,
               duration_ms: Date.now() - start,
               success,
               response_tokens: responseTokens,
-              baseline_tokens: baselineTokens
+              baseline_tokens: baselineTokens,
+              query_context: queryContext
             });
+            if (queryContext) {
+              try {
+                const misroute = detectMisroute(toolName, queryContext);
+                if (misroute) {
+                  recordHeuristicMisroute(db4, invocationId, misroute);
+                }
+              } catch {
+              }
+            }
           } catch {
           }
         }
@@ -24920,7 +26523,7 @@ function applyToolGating(targetServer, categories, getDb4, registry, getVaultPat
     const schemaIdx = handlerIdx - 1;
     const schema = args[schemaIdx];
     if (schema && typeof schema === "object" && !Array.isArray(schema)) {
-      schema.vault = z39.string().optional().describe(
+      schema.vault = z40.string().optional().describe(
         `Vault name for multi-vault mode. Available: ${registry.getVaultNames().join(", ")}. Default: ${registry.primaryName}`
       );
     }
@@ -24934,7 +26537,9 @@ function applyToolGating(targetServer, categories, getDb4, registry, getVaultPat
       handler = wrapWithVaultActivation(name, handler);
       args[args.length - 1] = wrapWithTracking(name, handler);
     }
-    return origTool(name, ...args);
+    const registered = origTool(name, ...args);
+    toolHandles.set(name, registered);
+    return registered;
   };
   const origRegisterTool = targetServer.registerTool?.bind(targetServer);
   if (origRegisterTool) {
@@ -24946,18 +26551,98 @@ function applyToolGating(targetServer, categories, getDb4, registry, getVaultPat
         handler = wrapWithVaultActivation(name, handler);
         args[args.length - 1] = wrapWithTracking(name, handler);
       }
-      return origRegisterTool(name, ...args);
+      const registered = origRegisterTool(name, ...args);
+      toolHandles.set(name, registered);
+      return registered;
     };
   }
-  return { get registered() {
-    return _registered;
-  }, get skipped() {
-    return _skipped;
-  } };
+  function installTieredCallHandler() {
+    if (tierMode !== "tiered") return;
+    const serverAny = targetServer;
+    serverAny.server.setRequestHandler(CallToolRequestSchema, async (request, extra) => {
+      try {
+        const tool = serverAny._registeredTools[request.params.name];
+        if (!tool) {
+          throw new McpError(ErrorCode.InvalidParams, `Tool ${request.params.name} not found`);
+        }
+        if (!tool.enabled) {
+          ensureToolEnabledForDirectCall(request.params.name);
+        }
+        if (!tool.enabled) {
+          throw new McpError(ErrorCode.InvalidParams, `Tool ${request.params.name} disabled`);
+        }
+        const isTaskRequest = !!request.params.task;
+        const taskSupport = tool.execution?.taskSupport;
+        const isTaskHandler = "createTask" in tool.handler;
+        if ((taskSupport === "required" || taskSupport === "optional") && !isTaskHandler) {
+          throw new McpError(ErrorCode.InternalError, `Tool ${request.params.name} has taskSupport '${taskSupport}' but was not registered with registerToolTask`);
+        }
+        if (taskSupport === "required" && !isTaskRequest) {
+          throw new McpError(ErrorCode.MethodNotFound, `Tool ${request.params.name} requires task augmentation (taskSupport: 'required')`);
+        }
+        if (taskSupport === "optional" && !isTaskRequest && isTaskHandler) {
+          return await serverAny.handleAutomaticTaskPolling(tool, request, extra);
+        }
+        const args = await serverAny.validateToolInput(tool, request.params.arguments, request.params.name);
+        const result = await serverAny.executeToolHandler(tool, args, extra);
+        if (isTaskRequest) {
+          return result;
+        }
+        await serverAny.validateToolOutput(tool, result, request.params.name);
+        return result;
+      } catch (error) {
+        if (error instanceof McpError && error.code === ErrorCode.UrlElicitationRequired) {
+          throw error;
+        }
+        return serverAny.createToolError(error instanceof Error ? error.message : String(error));
+      }
+    });
+  }
+  const controller = {
+    mode: tierMode,
+    get registered() {
+      return _registered;
+    },
+    get skipped() {
+      return _skipped;
+    },
+    get activeCategories() {
+      return new Set(activatedCategoryTiers.keys());
+    },
+    getOverride() {
+      return tierOverride;
+    },
+    finalizeRegistration() {
+      refreshToolVisibility();
+      installTieredCallHandler();
+    },
+    activateCategory(category, tier = 2) {
+      enableCategory(category, tier);
+    },
+    enableTierCategory(category) {
+      enableCategory(category, 2);
+    },
+    enableAllTiers() {
+      tierOverride = "full";
+      refreshToolVisibility();
+    },
+    setOverride(override) {
+      tierOverride = override;
+      refreshToolVisibility();
+    },
+    getActivatedCategoryTiers() {
+      return new Map(activatedCategoryTiers);
+    },
+    getRegisteredTools() {
+      return toolHandles;
+    }
+  };
+  controllerRef = controller;
+  return controller;
 }
 function registerAllTools(targetServer, ctx) {
   const { getVaultPath: gvp, getVaultIndex: gvi, getStateDb: gsd, getFlywheelConfig: gcf } = ctx;
-  registerHealthTools(targetServer, gvi, gvp, gcf, gsd, ctx.getWatcherStatus, () => trPkg.version);
+  registerHealthTools(targetServer, gvi, gvp, gcf, gsd, ctx.getWatcherStatus, () => trPkg.version, ctx.getPipelineActivity);
   registerSystemTools(
     targetServer,
     gvi,
@@ -25019,6 +26704,7 @@ function registerAllTools(targetServer, ctx) {
   });
   registerTagTools(targetServer, gvi, gvp);
   registerWikilinkFeedbackTools(targetServer, gsd);
+  registerToolSelectionFeedbackTools(targetServer, gsd);
   registerCorrectionTools(targetServer, gsd);
   registerInitTools(targetServer, gvp, gsd);
   registerConfigTools(
@@ -25061,6 +26747,10 @@ var flywheelConfig = {};
 var stateDb = null;
 var watcherInstance = null;
 var vaultRegistry = null;
+var httpListener = null;
+var watchdogTimer = null;
+var serverReady = false;
+var shutdownRequested = false;
 function getWatcherStatus() {
   if (vaultRegistry) {
     const name = globalThis.__flywheel_active_vault;
@@ -25073,7 +26763,30 @@ function getWatcherStatus() {
   }
   return watcherInstance?.status ?? null;
 }
-var enabledCategories = parseEnabledCategories();
+var toolConfig = resolveToolConfig();
+var enabledCategories = toolConfig.categories;
+var toolTierMode = toolConfig.isFullToolset ? "tiered" : "off";
+var runtimeToolTierOverride = "auto";
+var runtimeActiveCategoryTiers = /* @__PURE__ */ new Map();
+var primaryToolTierController = null;
+function getInstructionActiveCategories() {
+  if (toolTierMode !== "tiered") return void 0;
+  if (runtimeToolTierOverride === "full") {
+    return new Set(enabledCategories);
+  }
+  return new Set(runtimeActiveCategoryTiers.keys());
+}
+function syncRuntimeTierState(controller) {
+  runtimeToolTierOverride = controller.getOverride();
+  runtimeActiveCategoryTiers = new Map(controller.getActivatedCategoryTiers());
+}
+function handleTierStateChange(controller) {
+  syncRuntimeTierState(controller);
+  invalidateHttpPool();
+}
+function getConfigToolTierOverride(config) {
+  return config.tool_tier_override ?? "auto";
+}
 function buildRegistryContext() {
   return {
     getVaultPath: () => getActiveScopeOrNull()?.vaultPath ?? vaultPath,
@@ -25081,6 +26794,7 @@ function buildRegistryContext() {
     getStateDb: () => getActiveScopeOrNull()?.stateDb ?? stateDb,
     getFlywheelConfig: () => getActiveScopeOrNull()?.flywheelConfig ?? flywheelConfig,
     getWatcherStatus,
+    getPipelineActivity: () => getActiveScopeOrNull()?.pipelineActivity ?? null,
     updateVaultIndex,
     updateFlywheelConfig
   };
@@ -25091,20 +26805,76 @@ function buildVaultCallbacks() {
 function createConfiguredServer() {
   const s = new McpServer(
     { name: "flywheel-memory", version: pkg.version },
-    { instructions: generateInstructions(enabledCategories, vaultRegistry) }
+    { instructions: generateInstructions(enabledCategories, vaultRegistry, getInstructionActiveCategories()) }
   );
   const ctx = buildRegistryContext();
-  applyToolGating(s, enabledCategories, ctx.getStateDb, vaultRegistry, ctx.getVaultPath, buildVaultCallbacks());
+  const toolTierController = applyToolGating(
+    s,
+    enabledCategories,
+    ctx.getStateDb,
+    vaultRegistry,
+    ctx.getVaultPath,
+    buildVaultCallbacks(),
+    toolTierMode,
+    handleTierStateChange
+  );
   registerAllTools(s, ctx);
+  toolTierController.setOverride(runtimeToolTierOverride);
+  for (const [category, tier] of runtimeActiveCategoryTiers) {
+    toolTierController.activateCategory(category, tier);
+  }
+  toolTierController.finalizeRegistration();
   return s;
 }
+var HTTP_POOL_SIZE = 4;
+var httpServerPool = [];
+var httpRequestCount = 0;
+var httpServerCreateCount = 0;
+var httpServerReuseCount = 0;
+var httpServerDiscardCount = 0;
+function acquireHttpServer() {
+  const pooled = httpServerPool.pop();
+  if (pooled) {
+    httpServerReuseCount++;
+    return pooled;
+  }
+  httpServerCreateCount++;
+  return createConfiguredServer();
+}
+function releaseHttpServer(s) {
+  if (httpServerPool.length < HTTP_POOL_SIZE) {
+    httpServerPool.push(s);
+  }
+}
+function discardHttpServer(_s) {
+  httpServerDiscardCount++;
+}
+function invalidateHttpPool() {
+  const count = httpServerPool.length;
+  httpServerPool.length = 0;
+  if (count > 0) {
+    serverLog("http", `Pool invalidated: discarded ${count} cached server(s)`);
+  }
+}
 var server = new McpServer(
   { name: "flywheel-memory", version: pkg.version },
-  { instructions: generateInstructions(enabledCategories, vaultRegistry) }
+  { instructions: generateInstructions(enabledCategories, vaultRegistry, getInstructionActiveCategories()) }
 );
 var _registryCtx = buildRegistryContext();
-var _gatingResult = applyToolGating(server, enabledCategories, _registryCtx.getStateDb, vaultRegistry, _registryCtx.getVaultPath, buildVaultCallbacks());
+var _gatingResult = applyToolGating(
+  server,
+  enabledCategories,
+  _registryCtx.getStateDb,
+  vaultRegistry,
+  _registryCtx.getVaultPath,
+  buildVaultCallbacks(),
+  toolTierMode,
+  handleTierStateChange
+);
 registerAllTools(server, _registryCtx);
+_gatingResult.finalizeRegistration();
+primaryToolTierController = _gatingResult;
+syncRuntimeTierState(_gatingResult);
 var categoryList = Array.from(enabledCategories).sort().join(", ");
 serverLog("server", `Tool categories: ${categoryList}`);
 serverLog("server", `Registered ${_gatingResult.registered} tools, skipped ${_gatingResult.skipped}`);
@@ -25133,7 +26903,8 @@ async function initializeVault(name, vaultPathArg) {
     lastEdgeWeightRebuildAt: 0,
     lastEntityScanAt: 0,
     lastHubScoreRebuildAt: 0,
-    lastIndexCacheSaveAt: 0
+    lastIndexCacheSaveAt: 0,
+    pipelineActivity: createEmptyPipelineActivity()
   };
   try {
     ctx.stateDb = openStateDb(vaultPathArg);
@@ -25174,7 +26945,8 @@ function buildVaultScope(ctx) {
     indexState: ctx.indexState,
     indexError: ctx.indexError,
     embeddingsBuilding: ctx.embeddingsBuilding,
-    entityEmbeddingsMap: getEntityEmbeddingsMap()
+    entityEmbeddingsMap: getEntityEmbeddingsMap(),
+    pipelineActivity: ctx.pipelineActivity
   };
 }
 function activateVault(ctx) {
@@ -25221,6 +26993,11 @@ function updateVaultIndex(index) {
 function updateFlywheelConfig(config) {
   flywheelConfig = config;
   setWikilinkConfig(config);
+  if (toolTierMode === "tiered" && primaryToolTierController) {
+    primaryToolTierController.setOverride(getConfigToolTierOverride(config));
+    syncRuntimeTierState(primaryToolTierController);
+    invalidateHttpPool();
+  }
   const ctx = getActiveVaultContext();
   if (ctx) {
     ctx.flywheelConfig = config;
@@ -25348,6 +27125,15 @@ async function main() {
     stateDb = ctx.stateDb;
     activateVault(ctx);
   }
+  await initToolRouting();
+  if (stateDb) {
+    try {
+      const vaultName = vaultRegistry?.primaryName ?? "default";
+      const scores = getToolEffectivenessScores(stateDb);
+      loadEffectivenessSnapshot(vaultName, scores);
+    } catch {
+    }
+  }
   const transportMode = (process.env.FLYWHEEL_TRANSPORT ?? "stdio").toLowerCase();
   if (transportMode === "stdio" || transportMode === "both") {
     const transport = new StdioServerTransport();
@@ -25365,23 +27151,68 @@ async function main() {
     const httpHost = process.env.FLYWHEEL_HTTP_HOST ?? "127.0.0.1";
     const app = createMcpExpressApp({ host: httpHost });
     app.post("/mcp", async (req, res) => {
-      const httpServer = createConfiguredServer();
+      const t0 = performance2.now();
+      const httpServer = acquireHttpServer();
+      const acquireMs = performance2.now() - t0;
       const httpTransport = new StreamableHTTPServerTransport({ sessionIdGenerator: void 0 });
-      await httpServer.connect(httpTransport);
-      await httpTransport.handleRequest(req, res, req.body);
-      res.on("close", () => {
-        httpTransport.close();
-        httpServer.close();
-      });
+      let cleanExit = false;
+      try {
+        await httpServer.connect(httpTransport);
+        const connectMs = performance2.now() - t0;
+        httpRequestCount++;
+        await httpTransport.handleRequest(req, res, req.body);
+        cleanExit = true;
+        const totalMs = performance2.now() - t0;
+        if (totalMs > 25 || acquireMs > 5 || connectMs - acquireMs > 5) {
+          serverLog("http", `request: acquire=${acquireMs.toFixed(1)}ms connect=${(connectMs - acquireMs).toFixed(1)}ms total=${totalMs.toFixed(1)}ms`);
+        }
+      } catch (err) {
+        serverLog("http", `request error: ${err instanceof Error ? err.message : err}`, "error");
+      } finally {
+        try {
+          await httpTransport.close();
+        } catch {
+        }
+        try {
+          await httpServer.close();
+        } catch {
+        }
+        if (cleanExit) {
+          releaseHttpServer(httpServer);
+        } else {
+          discardHttpServer(httpServer);
+        }
+      }
     });
     app.get("/health", (_req, res) => {
-      const health = { status: "ok", version: pkg.version, vault: vaultPath };
+      const mem = process.memoryUsage();
+      const health = {
+        status: "ok",
+        version: pkg.version,
+        vault: vaultPath,
+        ready: serverReady,
+        uptime_s: Math.round(process.uptime()),
+        memory: {
+          rss_mb: Math.round(mem.rss / 1048576),
+          heap_used_mb: Math.round(mem.heapUsed / 1048576),
+          heap_total_mb: Math.round(mem.heapTotal / 1048576),
+          external_mb: Math.round(mem.external / 1048576)
+        },
+        http: {
+          requests: httpRequestCount,
+          pool_available: httpServerPool.length,
+          pool_max: HTTP_POOL_SIZE,
+          servers_created: httpServerCreateCount,
+          servers_reused: httpServerReuseCount,
+          servers_discarded: httpServerDiscardCount
+        }
+      };
       if (vaultRegistry?.isMultiVault) {
         health.vaults = vaultRegistry.getVaultNames();
       }
       res.json(health);
     });
-    app.listen(httpPort, httpHost, () => {
+    httpListener = app.listen(httpPort, httpHost, () => {
       serverLog("server", `HTTP transport on ${httpHost}:${httpPort}`);
     });
   }
@@ -25390,6 +27221,59 @@ async function main() {
   activateVault(primaryCtx);
   await bootVault(primaryCtx, startTime);
   activateVault(primaryCtx);
+  serverReady = true;
+  const watchdogInterval = parseInt(process.env.FLYWHEEL_WATCHDOG_INTERVAL ?? "0", 10);
+  if (watchdogInterval > 0 && (transportMode === "http" || transportMode === "both")) {
+    let consecutiveFailures = 0;
+    const httpPort = parseInt(process.env.FLYWHEEL_HTTP_PORT ?? "3111", 10);
+    const http = await import("http");
+    watchdogTimer = setInterval(() => {
+      if (shutdownRequested) return;
+      const req = http.get(`http://127.0.0.1:${httpPort}/health`, { timeout: 5e3 }, (res) => {
+        let body = "";
+        res.on("data", (chunk) => {
+          body += chunk;
+        });
+        res.on("end", () => {
+          try {
+            const parsed = JSON.parse(body);
+            if (res.statusCode === 200 && parsed.status === "ok" && parsed.ready === true) {
+              consecutiveFailures = 0;
+            } else {
+              consecutiveFailures++;
+              serverLog("watchdog", `Health check degraded (${consecutiveFailures}/3): status=${parsed.status} ready=${parsed.ready}`, "warn");
+            }
+          } catch {
+            consecutiveFailures++;
+            serverLog("watchdog", `Health check parse error (${consecutiveFailures}/3)`, "warn");
+          }
+          if (consecutiveFailures >= 3) {
+            serverLog("watchdog", `3 consecutive health check failures \u2014 exiting for systemd restart`, "error");
+            process.exit(1);
+          }
+        });
+      });
+      req.on("error", () => {
+        consecutiveFailures++;
+        serverLog("watchdog", `Health check failed (${consecutiveFailures}/3): request error`, "warn");
+        if (consecutiveFailures >= 3) {
+          serverLog("watchdog", `3 consecutive health check failures \u2014 exiting for systemd restart`, "error");
+          process.exit(1);
+        }
+      });
+      req.on("timeout", () => {
+        req.destroy();
+        consecutiveFailures++;
+        serverLog("watchdog", `Health check timeout (${consecutiveFailures}/3)`, "warn");
+        if (consecutiveFailures >= 3) {
+          serverLog("watchdog", `3 consecutive health check failures \u2014 exiting for systemd restart`, "error");
+          process.exit(1);
+        }
+      });
+    }, watchdogInterval);
+    watchdogTimer.unref();
+    serverLog("watchdog", `Self-ping watchdog started (interval=${watchdogInterval}ms)`);
+  }
   if (vaultConfigs && vaultConfigs.length > 1) {
     const secondaryConfigs = vaultConfigs.slice(1);
     (async () => {
@@ -25397,6 +27281,7 @@ async function main() {
         try {
           const ctx = await initializeVault(vc.name, vc.path);
           vaultRegistry.addContext(ctx);
+          invalidateHttpPool();
           loadVaultCooccurrence(ctx);
           activateVault(ctx);
           await bootVault(ctx, startTime);
@@ -25463,6 +27348,14 @@ function runPeriodicMaintenance(db4) {
   sweepExpiredMemories(db4);
   decayMemoryConfidence(db4);
   pruneSupersededMemories(db4, 90);
+  try {
+    const vaultName = getActiveScopeOrNull()?.name;
+    if (vaultName) {
+      const scores = getToolEffectivenessScores(db4);
+      loadEffectivenessSnapshot(vaultName, scores);
+    }
+  } catch {
+  }
   const now = Date.now();
   if (now - lastPurgeAt > 24 * 60 * 60 * 1e3) {
     purgeOldMetrics(db4, 90);
@@ -25556,6 +27449,21 @@ async function runPostIndexWork(ctx) {
     if (hasIndex && !modelChanged && !versionChanged) {
       serverLog("semantic", "Embeddings up-to-date, skipping build");
       loadEntityEmbeddingsToMemory();
+      if (sd) {
+        const entities = getAllEntitiesFromDb6(sd);
+        if (entities.length > 0) {
+          saveInferredCategories(classifyUncategorizedEntities(
+            entities.map((entity) => ({
+              entity: {
+                name: entity.name,
+                path: entity.path,
+                aliases: entity.aliases
+              },
+              category: entity.category
+            }))
+          ));
+        }
+      }
     } else {
       if (modelChanged) {
         serverLog("semantic", `Model changed ${storedModel} \u2192 ${getActiveModelId()}, clearing`);
@@ -25593,6 +27501,21 @@ async function runPostIndexWork(ctx) {
           }
           activateVault(ctx);
           loadEntityEmbeddingsToMemory();
+          if (sd) {
+            const entities = getAllEntitiesFromDb6(sd);
+            if (entities.length > 0) {
+              saveInferredCategories(classifyUncategorizedEntities(
+                entities.map((entity) => ({
+                  entity: {
+                    name: entity.name,
+                    path: entity.path,
+                    aliases: entity.aliases
+                  },
+                  category: entity.category
+                }))
+              ));
+            }
+          }
           setEmbeddingsBuildState("complete");
           serverLog("semantic", "Embeddings ready \u2014 searches now use hybrid ranking");
         } catch (err) {
@@ -25853,7 +27776,10 @@ if (process.argv.includes("--init-semantic")) {
   });
 }
 function gracefulShutdown(signal) {
+  shutdownRequested = true;
   console.error(`[Memory] Received ${signal}, shutting down...`);
+  if (watchdogTimer) clearInterval(watchdogTimer);
+  if (httpListener) httpListener.close();
   try {
     watcherInstance?.stop();
   } catch {
@@ -25870,5 +27796,6 @@ process.on("beforeExit", async () => {
   await flushLogs();
 });
 export {
-  getWatcherStatus
+  getWatcherStatus,
+  invalidateHttpPool
 };