@veewo/gitnexus 1.3.4

package/dist/cli/claude-hooks.d.ts

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+/**
+ * Claude Code Hook Registration
+ *
+ * Registers the GitNexus PreToolUse hook in ~/.claude/hooks.json
+ * so that grep/glob/bash calls are automatically augmented with
+ * knowledge graph context.
+ *
+ * Idempotent — safe to call multiple times.
+ */
+/**
+ * Register (or verify) the GitNexus hook in Claude Code's global hooks.json.
+ *
+ * - Creates ~/.claude/ and hooks.json if they don't exist
+ * - Preserves existing hooks from other tools
+ * - Skips if GitNexus hook is already registered
+ *
+ * Returns a status message for the CLI output.
+ */
+export declare function registerClaudeHook(): Promise<{
+    registered: boolean;
+    message: string;
+}>;

package/dist/cli/claude-hooks.js

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+/**
+ * Claude Code Hook Registration
+ *
+ * Registers the GitNexus PreToolUse hook in ~/.claude/hooks.json
+ * so that grep/glob/bash calls are automatically augmented with
+ * knowledge graph context.
+ *
+ * Idempotent — safe to call multiple times.
+ */
+import fs from 'fs/promises';
+import path from 'path';
+import os from 'os';
+import { fileURLToPath } from 'url';
+const __filename = fileURLToPath(import.meta.url);
+const __dirname = path.dirname(__filename);
+/**
+ * Get the absolute path to the gitnexus-hook.js file.
+ * Works for both local dev and npm-installed packages.
+ */
+function getHookScriptPath() {
+    // From dist/cli/claude-hooks.js → hooks/claude/gitnexus-hook.js
+    const packageRoot = path.resolve(__dirname, '..', '..');
+    return path.join(packageRoot, 'hooks', 'claude', 'gitnexus-hook.cjs');
+}
+/**
+ * Register (or verify) the GitNexus hook in Claude Code's global hooks.json.
+ *
+ * - Creates ~/.claude/ and hooks.json if they don't exist
+ * - Preserves existing hooks from other tools
+ * - Skips if GitNexus hook is already registered
+ *
+ * Returns a status message for the CLI output.
+ */
+export async function registerClaudeHook() {
+    const claudeDir = path.join(os.homedir(), '.claude');
+    const hooksFile = path.join(claudeDir, 'hooks.json');
+    const hookScript = getHookScriptPath();
+    // Check if the hook script exists
+    try {
+        await fs.access(hookScript);
+    }
+    catch {
+        return { registered: false, message: 'Hook script not found (package may be incomplete)' };
+    }
+    // Build the hook command — use node + absolute path for reliability
+    const hookCommand = `node "${hookScript}"`;
+    // Check if ~/.claude/ exists (user has Claude Code installed)
+    try {
+        await fs.access(claudeDir);
+    }
+    catch {
+        // No Claude Code installation — skip silently
+        return { registered: false, message: 'Claude Code not detected (~/.claude/ not found)' };
+    }
+    // Read existing hooks.json or start fresh
+    let hooksConfig = {};
+    try {
+        const existing = await fs.readFile(hooksFile, 'utf-8');
+        hooksConfig = JSON.parse(existing);
+    }
+    catch {
+        // File doesn't exist or is invalid — we'll create it
+    }
+    // Ensure the hooks structure exists
+    if (!hooksConfig.hooks) {
+        hooksConfig.hooks = {};
+    }
+    if (!Array.isArray(hooksConfig.hooks.PreToolUse)) {
+        hooksConfig.hooks.PreToolUse = [];
+    }
+    // Check if GitNexus hook is already registered
+    const existingEntry = hooksConfig.hooks.PreToolUse.find((entry) => {
+        if (!entry.hooks || !Array.isArray(entry.hooks))
+            return false;
+        return entry.hooks.some((h) => h.command && (h.command.includes('gitnexus-hook') ||
+            h.command.includes('gitnexus augment')));
+    });
+    if (existingEntry) {
+        return { registered: true, message: 'Claude Code hook already registered' };
+    }
+    // Add the GitNexus hook entry
+    hooksConfig.hooks.PreToolUse.push({
+        matcher: {
+            tool_name: "Grep|Glob|Bash"
+        },
+        hooks: [
+            {
+                type: "command",
+                command: hookCommand,
+                timeout: 8000
+            }
+        ]
+    });
+    // Write back
+    await fs.writeFile(hooksFile, JSON.stringify(hooksConfig, null, 2) + '\n', 'utf-8');
+    return { registered: true, message: 'Claude Code hook registered' };
+}

package/dist/cli/clean.d.ts

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+/**
+ * Clean Command
+ *
+ * Removes the .gitnexus index from the current repository.
+ * Also unregisters it from the global registry.
+ */
+export declare const cleanCommand: (options?: {
+    force?: boolean;
+    all?: boolean;
+}) => Promise<void>;

package/dist/cli/clean.js

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+/**
+ * Clean Command
+ *
+ * Removes the .gitnexus index from the current repository.
+ * Also unregisters it from the global registry.
+ */
+import fs from 'fs/promises';
+import { findRepo, unregisterRepo, listRegisteredRepos } from '../storage/repo-manager.js';
+export const cleanCommand = async (options) => {
+    // --all flag: clean all indexed repos
+    if (options?.all) {
+        if (!options?.force) {
+            const entries = await listRegisteredRepos();
+            if (entries.length === 0) {
+                console.log('No indexed repositories found.');
+                return;
+            }
+            console.log(`This will delete GitNexus indexes for ${entries.length} repo(s):`);
+            for (const entry of entries) {
+                console.log(`  - ${entry.name} (${entry.path})`);
+            }
+            console.log('\nRun with --force to confirm deletion.');
+            return;
+        }
+        const entries = await listRegisteredRepos();
+        for (const entry of entries) {
+            try {
+                await fs.rm(entry.storagePath, { recursive: true, force: true });
+                await unregisterRepo(entry.path);
+                console.log(`Deleted: ${entry.name} (${entry.storagePath})`);
+            }
+            catch (err) {
+                console.error(`Failed to delete ${entry.name}:`, err);
+            }
+        }
+        return;
+    }
+    // Default: clean current repo
+    const cwd = process.cwd();
+    const repo = await findRepo(cwd);
+    if (!repo) {
+        console.log('No indexed repository found in this directory.');
+        return;
+    }
+    const repoName = repo.repoPath.split(/[/\\]/).pop() || repo.repoPath;
+    if (!options?.force) {
+        console.log(`This will delete the GitNexus index for: ${repoName}`);
+        console.log(`   Path: ${repo.storagePath}`);
+        console.log('\nRun with --force to confirm deletion.');
+        return;
+    }
+    try {
+        await fs.rm(repo.storagePath, { recursive: true, force: true });
+        await unregisterRepo(repo.repoPath);
+        console.log(`Deleted: ${repo.storagePath}`);
+    }
+    catch (err) {
+        console.error('Failed to delete:', err);
+    }
+};

package/dist/cli/eval-server.d.ts

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+/**
+ * Eval Server — Lightweight HTTP server for SWE-bench evaluation
+ *
+ * Keeps KuzuDB warm in memory so tool calls from the agent are near-instant.
+ * Designed to run inside Docker containers during SWE-bench evaluation.
+ *
+ * KEY DESIGN: Returns LLM-friendly text, not raw JSON.
+ * Raw JSON wastes tokens and is hard for models to parse. The text formatter
+ * converts structured results into compact, readable output that models
+ * can immediately act on. Next-step hints guide the agent through a
+ * productive tool-chaining workflow (query → context → impact → fix).
+ *
+ * Architecture:
+ *   Agent bash cmd → curl localhost:PORT/tool/query → eval-server → LocalBackend → format → text
+ *
+ * Usage:
+ *   gitnexus eval-server                    # default port 4848
+ *   gitnexus eval-server --port 4848        # explicit port
+ *   gitnexus eval-server --idle-timeout 300 # auto-shutdown after 300s idle
+ *
+ * API:
+ *   POST /tool/:name   — Call a tool. Body is JSON arguments. Returns formatted text.
+ *   GET  /health       — Health check. Returns {"status":"ok","repos":[...]}
+ *   POST /shutdown     — Graceful shutdown.
+ */
+export interface EvalServerOptions {
+    port?: string;
+    idleTimeout?: string;
+}
+export declare function evalServerCommand(options?: EvalServerOptions): Promise<void>;

package/dist/cli/eval-server.js

@@ -0,0 +1,372 @@
+/**
+ * Eval Server — Lightweight HTTP server for SWE-bench evaluation
+ *
+ * Keeps KuzuDB warm in memory so tool calls from the agent are near-instant.
+ * Designed to run inside Docker containers during SWE-bench evaluation.
+ *
+ * KEY DESIGN: Returns LLM-friendly text, not raw JSON.
+ * Raw JSON wastes tokens and is hard for models to parse. The text formatter
+ * converts structured results into compact, readable output that models
+ * can immediately act on. Next-step hints guide the agent through a
+ * productive tool-chaining workflow (query → context → impact → fix).
+ *
+ * Architecture:
+ *   Agent bash cmd → curl localhost:PORT/tool/query → eval-server → LocalBackend → format → text
+ *
+ * Usage:
+ *   gitnexus eval-server                    # default port 4848
+ *   gitnexus eval-server --port 4848        # explicit port
+ *   gitnexus eval-server --idle-timeout 300 # auto-shutdown after 300s idle
+ *
+ * API:
+ *   POST /tool/:name   — Call a tool. Body is JSON arguments. Returns formatted text.
+ *   GET  /health       — Health check. Returns {"status":"ok","repos":[...]}
+ *   POST /shutdown     — Graceful shutdown.
+ */
+import http from 'http';
+import { LocalBackend } from '../mcp/local/local-backend.js';
+// ─── Text Formatters ──────────────────────────────────────────────────
+// Convert structured JSON results into compact, LLM-friendly text.
+// Design: minimize tokens, maximize actionability.
+function formatQueryResult(result) {
+    if (result.error)
+        return `Error: ${result.error}`;
+    const lines = [];
+    const processes = result.processes || [];
+    const symbols = result.process_symbols || [];
+    const defs = result.definitions || [];
+    if (processes.length === 0 && defs.length === 0) {
+        return 'No matching execution flows found. Try a different search term or use grep.';
+    }
+    lines.push(`Found ${processes.length} execution flow(s):\n`);
+    for (let i = 0; i < processes.length; i++) {
+        const p = processes[i];
+        lines.push(`${i + 1}. ${p.summary} (${p.step_count} steps, ${p.symbol_count} symbols)`);
+        // Show symbols belonging to this process
+        const procSymbols = symbols.filter((s) => s.process_id === p.id);
+        for (const s of procSymbols.slice(0, 6)) {
+            const loc = s.startLine ? `:${s.startLine}` : '';
+            lines.push(`   ${s.type} ${s.name} → ${s.filePath}${loc}`);
+        }
+        if (procSymbols.length > 6) {
+            lines.push(`   ... and ${procSymbols.length - 6} more`);
+        }
+        lines.push('');
+    }
+    if (defs.length > 0) {
+        lines.push(`Standalone definitions:`);
+        for (const d of defs.slice(0, 8)) {
+            lines.push(`  ${d.type || 'Symbol'} ${d.name} → ${d.filePath || '?'}`);
+        }
+        if (defs.length > 8)
+            lines.push(`  ... and ${defs.length - 8} more`);
+    }
+    return lines.join('\n').trim();
+}
+function formatContextResult(result) {
+    if (result.error)
+        return `Error: ${result.error}`;
+    if (result.status === 'ambiguous') {
+        const lines = [`Multiple symbols named '${result.candidates?.[0]?.name || '?'}'. Disambiguate with file path:\n`];
+        for (const c of result.candidates || []) {
+            lines.push(`  ${c.kind} ${c.name} → ${c.filePath}:${c.line || '?'}  (uid: ${c.uid})`);
+        }
+        lines.push(`\nRe-run: gitnexus-context "${result.candidates?.[0]?.name}" "<file_path>"`);
+        return lines.join('\n');
+    }
+    const sym = result.symbol;
+    if (!sym)
+        return 'Symbol not found.';
+    const lines = [];
+    const loc = sym.startLine ? `:${sym.startLine}-${sym.endLine}` : '';
+    lines.push(`${sym.kind} ${sym.name} → ${sym.filePath}${loc}`);
+    lines.push('');
+    // Incoming refs (who calls/imports/extends this)
+    const incoming = result.incoming || {};
+    const incomingCount = Object.values(incoming).reduce((sum, arr) => sum + arr.length, 0);
+    if (incomingCount > 0) {
+        lines.push(`Called/imported by (${incomingCount}):`);
+        for (const [relType, refs] of Object.entries(incoming)) {
+            for (const ref of refs.slice(0, 10)) {
+                lines.push(`  ← [${relType}] ${ref.kind} ${ref.name} → ${ref.filePath}`);
+            }
+        }
+        lines.push('');
+    }
+    // Outgoing refs (what this calls/imports)
+    const outgoing = result.outgoing || {};
+    const outgoingCount = Object.values(outgoing).reduce((sum, arr) => sum + arr.length, 0);
+    if (outgoingCount > 0) {
+        lines.push(`Calls/imports (${outgoingCount}):`);
+        for (const [relType, refs] of Object.entries(outgoing)) {
+            for (const ref of refs.slice(0, 10)) {
+                lines.push(`  → [${relType}] ${ref.kind} ${ref.name} → ${ref.filePath}`);
+            }
+        }
+        lines.push('');
+    }
+    // Processes
+    const procs = result.processes || [];
+    if (procs.length > 0) {
+        lines.push(`Participates in ${procs.length} execution flow(s):`);
+        for (const p of procs) {
+            lines.push(`  • ${p.name} (step ${p.step_index}/${p.step_count})`);
+        }
+    }
+    if (sym.content) {
+        lines.push('');
+        lines.push(`Source:`);
+        lines.push(sym.content);
+    }
+    return lines.join('\n').trim();
+}
+function formatImpactResult(result) {
+    if (result.error)
+        return `Error: ${result.error}`;
+    const target = result.target;
+    const direction = result.direction;
+    const byDepth = result.byDepth || {};
+    const total = result.impactedCount || 0;
+    if (total === 0) {
+        return `${target?.name || '?'}: No ${direction} dependencies found. This symbol appears isolated.`;
+    }
+    const lines = [];
+    const dirLabel = direction === 'upstream' ? 'depends on this (will break if changed)' : 'this depends on';
+    lines.push(`Blast radius for ${target?.kind || ''} ${target?.name} (${direction}): ${total} symbol(s) ${dirLabel}\n`);
+    const depthLabels = {
+        1: 'WILL BREAK (direct)',
+        2: 'LIKELY AFFECTED (indirect)',
+        3: 'MAY NEED TESTING (transitive)',
+    };
+    for (const depth of [1, 2, 3]) {
+        const items = byDepth[depth];
+        if (!items || items.length === 0)
+            continue;
+        lines.push(`d=${depth}: ${depthLabels[depth] || ''} (${items.length})`);
+        for (const item of items.slice(0, 12)) {
+            const conf = item.confidence < 1 ? ` (conf: ${item.confidence})` : '';
+            lines.push(`  ${item.type} ${item.name} → ${item.filePath} [${item.relationType}]${conf}`);
+        }
+        if (items.length > 12) {
+            lines.push(`  ... and ${items.length - 12} more`);
+        }
+        lines.push('');
+    }
+    return lines.join('\n').trim();
+}
+function formatCypherResult(result) {
+    if (result.error)
+        return `Error: ${result.error}`;
+    if (Array.isArray(result)) {
+        if (result.length === 0)
+            return 'Query returned 0 rows.';
+        // Format as simple table
+        const keys = Object.keys(result[0]);
+        const lines = [`${result.length} row(s):\n`];
+        for (const row of result.slice(0, 30)) {
+            const parts = keys.map(k => `${k}: ${row[k]}`);
+            lines.push(`  ${parts.join(' | ')}`);
+        }
+        if (result.length > 30) {
+            lines.push(`  ... ${result.length - 30} more rows`);
+        }
+        return lines.join('\n');
+    }
+    return typeof result === 'string' ? result : JSON.stringify(result, null, 2);
+}
+function formatDetectChangesResult(result) {
+    if (result.error)
+        return `Error: ${result.error}`;
+    const summary = result.summary || {};
+    const lines = [];
+    if (summary.changed_count === 0) {
+        return 'No changes detected.';
+    }
+    lines.push(`Changes: ${summary.changed_files || 0} files, ${summary.changed_count || 0} symbols`);
+    lines.push(`Affected processes: ${summary.affected_count || 0}`);
+    lines.push(`Risk level: ${summary.risk_level || 'unknown'}\n`);
+    const changed = result.changed_symbols || [];
+    if (changed.length > 0) {
+        lines.push(`Changed symbols:`);
+        for (const s of changed.slice(0, 15)) {
+            lines.push(`  ${s.type} ${s.name} → ${s.filePath}`);
+        }
+        if (changed.length > 15)
+            lines.push(`  ... and ${changed.length - 15} more`);
+        lines.push('');
+    }
+    const affected = result.affected_processes || [];
+    if (affected.length > 0) {
+        lines.push(`Affected execution flows:`);
+        for (const p of affected.slice(0, 10)) {
+            const steps = (p.changed_steps || []).map((s) => s.symbol).join(', ');
+            lines.push(`  • ${p.name} (${p.step_count} steps) — changed: ${steps}`);
+        }
+    }
+    return lines.join('\n').trim();
+}
+function formatListReposResult(result) {
+    if (!Array.isArray(result) || result.length === 0) {
+        return 'No indexed repositories.';
+    }
+    const lines = ['Indexed repositories:\n'];
+    for (const r of result) {
+        const stats = r.stats || {};
+        lines.push(`  ${r.name} — ${stats.nodes || '?'} symbols, ${stats.edges || '?'} relationships, ${stats.processes || '?'} flows`);
+        lines.push(`    Path: ${r.path}`);
+        lines.push(`    Indexed: ${r.indexedAt}`);
+    }
+    return lines.join('\n');
+}
+/**
+ * Format a tool result as compact, LLM-friendly text.
+ */
+function formatToolResult(toolName, result) {
+    switch (toolName) {
+        case 'query': return formatQueryResult(result);
+        case 'context': return formatContextResult(result);
+        case 'impact': return formatImpactResult(result);
+        case 'cypher': return formatCypherResult(result);
+        case 'detect_changes': return formatDetectChangesResult(result);
+        case 'list_repos': return formatListReposResult(result);
+        default: return typeof result === 'string' ? result : JSON.stringify(result, null, 2);
+    }
+}
+// ─── Next-Step Hints ──────────────────────────────────────────────────
+// Guide the agent to the logical next tool call.
+// Critical for tool chaining: query → context → impact → fix.
+function getNextStepHint(toolName) {
+    switch (toolName) {
+        case 'query':
+            return '\n---\nNext: Pick a symbol above and run gitnexus-context "<name>" to see all its callers, callees, and execution flows.';
+        case 'context':
+            return '\n---\nNext: To check what breaks if you change this, run gitnexus-impact "<name>" upstream';
+        case 'impact':
+            return '\n---\nNext: Review d=1 items first (WILL BREAK). Read the source with cat to understand the code, then make your fix.';
+        case 'cypher':
+            return '\n---\nNext: To explore a result symbol in depth, run gitnexus-context "<name>"';
+        case 'detect_changes':
+            return '\n---\nNext: Run gitnexus-context "<symbol>" on high-risk changed symbols to check their callers.';
+        default:
+            return '';
+    }
+}
+// ─── Server ───────────────────────────────────────────────────────────
+export async function evalServerCommand(options) {
+    const port = parseInt(options?.port || '4848');
+    const idleTimeoutSec = parseInt(options?.idleTimeout || '0');
+    const backend = new LocalBackend();
+    const ok = await backend.init();
+    if (!ok) {
+        console.error('GitNexus eval-server: No indexed repositories found. Run: gitnexus analyze');
+        process.exit(1);
+    }
+    const repos = await backend.listRepos();
+    console.error(`GitNexus eval-server: ${repos.length} repo(s) loaded: ${repos.map(r => r.name).join(', ')}`);
+    let idleTimer = null;
+    function resetIdleTimer() {
+        if (idleTimeoutSec <= 0)
+            return;
+        if (idleTimer)
+            clearTimeout(idleTimer);
+        idleTimer = setTimeout(async () => {
+            console.error('GitNexus eval-server: Idle timeout reached, shutting down');
+            await backend.disconnect();
+            process.exit(0);
+        }, idleTimeoutSec * 1000);
+    }
+    const server = http.createServer(async (req, res) => {
+        resetIdleTimer();
+        try {
+            // Health check
+            if (req.method === 'GET' && req.url === '/health') {
+                res.setHeader('Content-Type', 'application/json');
+                res.writeHead(200);
+                res.end(JSON.stringify({ status: 'ok', repos: repos.map(r => r.name) }));
+                return;
+            }
+            // Shutdown
+            if (req.method === 'POST' && req.url === '/shutdown') {
+                res.setHeader('Content-Type', 'application/json');
+                res.writeHead(200);
+                res.end(JSON.stringify({ status: 'shutting_down' }));
+                setTimeout(async () => {
+                    await backend.disconnect();
+                    server.close();
+                    process.exit(0);
+                }, 100);
+                return;
+            }
+            // Tool calls: POST /tool/:name
+            const toolMatch = req.url?.match(/^\/tool\/(\w+)$/);
+            if (req.method === 'POST' && toolMatch) {
+                const toolName = toolMatch[1];
+                const body = await readBody(req);
+                let args = {};
+                if (body.trim()) {
+                    try {
+                        args = JSON.parse(body);
+                    }
+                    catch {
+                        res.setHeader('Content-Type', 'text/plain');
+                        res.writeHead(400);
+                        res.end('Error: Invalid JSON body');
+                        return;
+                    }
+                }
+                // Call tool, format result as text, append next-step hint
+                const result = await backend.callTool(toolName, args);
+                const formatted = formatToolResult(toolName, result);
+                const hint = getNextStepHint(toolName);
+                res.setHeader('Content-Type', 'text/plain');
+                res.writeHead(200);
+                res.end(formatted + hint);
+                return;
+            }
+            // 404
+            res.setHeader('Content-Type', 'text/plain');
+            res.writeHead(404);
+            res.end('Not found. Use POST /tool/:name or GET /health');
+        }
+        catch (err) {
+            res.setHeader('Content-Type', 'text/plain');
+            res.writeHead(500);
+            res.end(`Error: ${err.message || 'Internal error'}`);
+        }
+    });
+    server.listen(port, '127.0.0.1', () => {
+        console.error(`GitNexus eval-server: listening on http://127.0.0.1:${port}`);
+        console.error(`  POST /tool/query    — search execution flows`);
+        console.error(`  POST /tool/context  — 360-degree symbol view`);
+        console.error(`  POST /tool/impact   — blast radius analysis`);
+        console.error(`  POST /tool/cypher   — raw Cypher query`);
+        console.error(`  GET  /health        — health check`);
+        console.error(`  POST /shutdown      — graceful shutdown`);
+        if (idleTimeoutSec > 0) {
+            console.error(`  Auto-shutdown after ${idleTimeoutSec}s idle`);
+        }
+        try {
+            process.stdout.write(`GITNEXUS_EVAL_SERVER_READY:${port}\n`);
+        }
+        catch {
+            // stdout may not be available
+        }
+    });
+    resetIdleTimer();
+    const shutdown = async () => {
+        console.error('GitNexus eval-server: shutting down...');
+        await backend.disconnect();
+        server.close();
+        process.exit(0);
+    };
+    process.on('SIGINT', shutdown);
+    process.on('SIGTERM', shutdown);
+}
+function readBody(req) {
+    return new Promise((resolve, reject) => {
+        const chunks = [];
+        req.on('data', (chunk) => chunks.push(chunk));
+        req.on('end', () => resolve(Buffer.concat(chunks).toString('utf-8')));
+        req.on('error', reject);
+    });
+}

package/dist/cli/index.d.ts

@@ -0,0 +1,2 @@
+#!/usr/bin/env node
+export {};