@vandeepunk/pi-coding-agent 0.0.2 → 0.0.3

package/dist/core/resource-loader.js.map

@@ -1 +1 @@
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{ existsSync, readdirSync, readFileSync, statSync } from \"node:fs\";\nimport { homedir } from \"node:os\";\nimport { join, resolve, sep } from \"node:path\";\nimport chalk from \"chalk\";\nimport { CONFIG_DIR_NAME, getAgentDir } from \"../config.js\";\nimport { loadThemeFromPath, type Theme } from \"../modes/interactive/theme/theme.js\";\nimport type { ResourceDiagnostic } from \"./diagnostics.js\";\n\nexport type { ResourceCollision, ResourceDiagnostic } from \"./diagnostics.js\";\n\nimport { createEventBus, type EventBus } from \"./event-bus.js\";\nimport { createExtensionRuntime, loadExtensionFromFactory, loadExtensions } from \"./extensions/loader.js\";\nimport type { Extension, ExtensionFactory, ExtensionRuntime, LoadExtensionsResult } from \"./extensions/types.js\";\nimport { DefaultPackageManager, type PathMetadata } from \"./package-manager.js\";\nimport type { PromptTemplate } from \"./prompt-templates.js\";\nimport { loadPromptTemplates } from \"./prompt-templates.js\";\nimport { SettingsManager } from \"./settings-manager.js\";\nimport type { Skill } from \"./skills.js\";\nimport { loadSkills } from \"./skills.js\";\n\nexport interface ResourceExtensionPaths {\n\tskillPaths?: Array<{ path: string; metadata: PathMetadata }>;\n\tpromptPaths?: Array<{ path: string; metadata: PathMetadata }>;\n\tthemePaths?: Array<{ path: string; metadata: PathMetadata }>;\n}\n\nexport interface ResourceLoader {\n\tgetExtensions(): LoadExtensionsResult;\n\tgetSkills(): { skills: Skill[]; diagnostics: ResourceDiagnostic[] };\n\tgetPrompts(): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] };\n\tgetThemes(): { themes: Theme[]; diagnostics: ResourceDiagnostic[] };\n\tgetAgentsFiles(): { agentsFiles: Array<{ path: string; content: string }> };\n\tgetSystemPrompt(): string | undefined;\n\tgetAppendSystemPrompt(): string[];\n\tgetPathMetadata(): Map<string, PathMetadata>;\n\textendResources(paths: ResourceExtensionPaths): void;\n\treload(): Promise<void>;\n}\n\nfunction resolvePromptInput(input: string | undefined, description: string): string | undefined {\n\tif (!input) {\n\t\treturn undefined;\n\t}\n\n\tif (existsSync(input)) {\n\t\ttry {\n\t\t\treturn readFileSync(input, \"utf-8\");\n\t\t} catch (error) {\n\t\t\tconsole.error(chalk.yellow(`Warning: Could not read ${description} file ${input}: ${error}`));\n\t\t\treturn input;\n\t\t}\n\t}\n\n\treturn input;\n}\n\nfunction loadContextFileFromDir(dir: string): { path: string; content: string } | null {\n\tconst candidates = [\"AGENTS.md\", \"CLAUDE.md\"];\n\tfor (const filename of candidates) {\n\t\tconst filePath = join(dir, filename);\n\t\tif (existsSync(filePath)) {\n\t\t\ttry {\n\t\t\t\treturn {\n\t\t\t\t\tpath: filePath,\n\t\t\t\t\tcontent: readFileSync(filePath, \"utf-8\"),\n\t\t\t\t};\n\t\t\t} catch (error) {\n\t\t\t\tconsole.error(chalk.yellow(`Warning: Could not read ${filePath}: ${error}`));\n\t\t\t}\n\t\t}\n\t}\n\treturn null;\n}\n\nfunction loadProjectContextFiles(\n\toptions: { cwd?: string; agentDir?: string } = {},\n): Array<{ path: string; content: string }> {\n\tconst resolvedCwd = options.cwd ?? process.cwd();\n\tconst resolvedAgentDir = options.agentDir ?? getAgentDir();\n\n\tconst contextFiles: Array<{ path: string; content: string }> = [];\n\tconst seenPaths = new Set<string>();\n\n\tconst globalContext = loadContextFileFromDir(resolvedAgentDir);\n\tif (globalContext) {\n\t\tcontextFiles.push(globalContext);\n\t\tseenPaths.add(globalContext.path);\n\t}\n\n\tconst ancestorContextFiles: Array<{ path: string; content: string }> = [];\n\n\tlet currentDir = resolvedCwd;\n\tconst root = resolve(\"/\");\n\n\twhile (true) {\n\t\tconst contextFile = loadContextFileFromDir(currentDir);\n\t\tif (contextFile && !seenPaths.has(contextFile.path)) {\n\t\t\tancestorContextFiles.unshift(contextFile);\n\t\t\tseenPaths.add(contextFile.path);\n\t\t}\n\n\t\tif (currentDir === root) break;\n\n\t\tconst parentDir = resolve(currentDir, \"..\");\n\t\tif (parentDir === currentDir) break;\n\t\tcurrentDir = parentDir;\n\t}\n\n\tcontextFiles.push(...ancestorContextFiles);\n\n\treturn contextFiles;\n}\n\nexport interface DefaultResourceLoaderOptions {\n\tcwd?: string;\n\tagentDir?: string;\n\tsettingsManager?: SettingsManager;\n\teventBus?: EventBus;\n\tadditionalExtensionPaths?: string[];\n\tadditionalSkillPaths?: string[];\n\tadditionalPromptTemplatePaths?: string[];\n\tadditionalThemePaths?: string[];\n\textensionFactories?: ExtensionFactory[];\n\tnoExtensions?: boolean;\n\tnoSkills?: boolean;\n\tnoPromptTemplates?: boolean;\n\tnoThemes?: boolean;\n\tsystemPrompt?: string;\n\tappendSystemPrompt?: string;\n\textensionsOverride?: (base: LoadExtensionsResult) => LoadExtensionsResult;\n\tskillsOverride?: (base: { skills: Skill[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tskills: Skill[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tpromptsOverride?: (base: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tprompts: PromptTemplate[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tthemesOverride?: (base: { themes: Theme[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tagentsFilesOverride?: (base: { agentsFiles: Array<{ path: string; content: string }> }) => {\n\t\tagentsFiles: Array<{ path: string; content: string }>;\n\t};\n\tsystemPromptOverride?: (base: string | undefined) => string | undefined;\n\tappendSystemPromptOverride?: (base: string[]) => string[];\n}\n\nexport class DefaultResourceLoader implements ResourceLoader {\n\tprivate cwd: string;\n\tprivate agentDir: string;\n\tprivate settingsManager: SettingsManager;\n\tprivate eventBus: EventBus;\n\tprivate packageManager: DefaultPackageManager;\n\tprivate additionalExtensionPaths: string[];\n\tprivate additionalSkillPaths: string[];\n\tprivate additionalPromptTemplatePaths: string[];\n\tprivate additionalThemePaths: string[];\n\tprivate extensionFactories: ExtensionFactory[];\n\tprivate noExtensions: boolean;\n\tprivate noSkills: boolean;\n\tprivate noPromptTemplates: boolean;\n\tprivate noThemes: boolean;\n\tprivate systemPromptSource?: string;\n\tprivate appendSystemPromptSource?: string;\n\tprivate extensionsOverride?: (base: LoadExtensionsResult) => LoadExtensionsResult;\n\tprivate skillsOverride?: (base: { skills: Skill[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tskills: Skill[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate promptsOverride?: (base: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tprompts: PromptTemplate[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate themesOverride?: (base: { themes: Theme[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate agentsFilesOverride?: (base: { agentsFiles: Array<{ path: string; content: string }> }) => {\n\t\tagentsFiles: Array<{ path: string; content: string }>;\n\t};\n\tprivate systemPromptOverride?: (base: string | undefined) => string | undefined;\n\tprivate appendSystemPromptOverride?: (base: string[]) => string[];\n\n\tprivate extensionsResult: LoadExtensionsResult;\n\tprivate skills: Skill[];\n\tprivate skillDiagnostics: ResourceDiagnostic[];\n\tprivate prompts: PromptTemplate[];\n\tprivate promptDiagnostics: ResourceDiagnostic[];\n\tprivate themes: Theme[];\n\tprivate themeDiagnostics: ResourceDiagnostic[];\n\tprivate agentsFiles: Array<{ path: string; content: string }>;\n\tprivate systemPrompt?: string;\n\tprivate appendSystemPrompt: string[];\n\tprivate pathMetadata: Map<string, PathMetadata>;\n\tprivate lastSkillPaths: string[];\n\tprivate lastPromptPaths: string[];\n\tprivate lastThemePaths: string[];\n\n\tconstructor(options: DefaultResourceLoaderOptions) {\n\t\tthis.cwd = options.cwd ?? process.cwd();\n\t\tthis.agentDir = options.agentDir ?? getAgentDir();\n\t\tthis.settingsManager = 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SettingsManager.create(this.cwd, this.agentDir);\n\t\tthis.eventBus = options.eventBus ?? createEventBus();\n\t\tthis.packageManager = new DefaultPackageManager({\n\t\t\tcwd: this.cwd,\n\t\t\tagentDir: this.agentDir,\n\t\t\tsettingsManager: this.settingsManager,\n\t\t});\n\t\tthis.additionalExtensionPaths = options.additionalExtensionPaths ?? [];\n\t\tthis.additionalSkillPaths = options.additionalSkillPaths ?? [];\n\t\tthis.additionalPromptTemplatePaths = options.additionalPromptTemplatePaths ?? [];\n\t\tthis.additionalThemePaths = options.additionalThemePaths ?? [];\n\t\tthis.extensionFactories = options.extensionFactories ?? [];\n\t\tthis.noExtensions = options.noExtensions ?? false;\n\t\tthis.noSkills = options.noSkills ?? false;\n\t\tthis.noPromptTemplates = options.noPromptTemplates ?? false;\n\t\tthis.noThemes = options.noThemes ?? false;\n\t\tthis.systemPromptSource = options.systemPrompt;\n\t\tthis.appendSystemPromptSource = options.appendSystemPrompt;\n\t\tthis.extensionsOverride = options.extensionsOverride;\n\t\tthis.skillsOverride = options.skillsOverride;\n\t\tthis.promptsOverride = options.promptsOverride;\n\t\tthis.themesOverride = options.themesOverride;\n\t\tthis.agentsFilesOverride = options.agentsFilesOverride;\n\t\tthis.systemPromptOverride = options.systemPromptOverride;\n\t\tthis.appendSystemPromptOverride = options.appendSystemPromptOverride;\n\n\t\tthis.extensionsResult = { extensions: [], errors: [], runtime: createExtensionRuntime() };\n\t\tthis.skills = [];\n\t\tthis.skillDiagnostics = [];\n\t\tthis.prompts = [];\n\t\tthis.promptDiagnostics = [];\n\t\tthis.themes = [];\n\t\tthis.themeDiagnostics = [];\n\t\tthis.agentsFiles = [];\n\t\tthis.appendSystemPrompt = [];\n\t\tthis.pathMetadata = new Map();\n\t\tthis.lastSkillPaths = [];\n\t\tthis.lastPromptPaths = [];\n\t\tthis.lastThemePaths = [];\n\t}\n\n\tgetExtensions(): LoadExtensionsResult {\n\t\treturn this.extensionsResult;\n\t}\n\n\tgetSkills(): { skills: Skill[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { skills: this.skills, diagnostics: this.skillDiagnostics };\n\t}\n\n\tgetPrompts(): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { prompts: this.prompts, diagnostics: this.promptDiagnostics };\n\t}\n\n\tgetThemes(): { themes: Theme[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { themes: this.themes, diagnostics: this.themeDiagnostics };\n\t}\n\n\tgetAgentsFiles(): { agentsFiles: Array<{ path: string; content: string }> } {\n\t\treturn { agentsFiles: this.agentsFiles };\n\t}\n\n\tgetSystemPrompt(): string | undefined {\n\t\treturn this.systemPrompt;\n\t}\n\n\tgetAppendSystemPrompt(): string[] {\n\t\treturn this.appendSystemPrompt;\n\t}\n\n\tgetPathMetadata(): Map<string, PathMetadata> {\n\t\treturn this.pathMetadata;\n\t}\n\n\textendResources(paths: ResourceExtensionPaths): void {\n\t\tconst skillPaths = this.normalizeExtensionPaths(paths.skillPaths ?? []);\n\t\tconst promptPaths = this.normalizeExtensionPaths(paths.promptPaths ?? []);\n\t\tconst themePaths = this.normalizeExtensionPaths(paths.themePaths ?? []);\n\n\t\tif (skillPaths.length > 0) {\n\t\t\tthis.lastSkillPaths = this.mergePaths(\n\t\t\t\tthis.lastSkillPaths,\n\t\t\t\tskillPaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updateSkillsFromPaths(this.lastSkillPaths, skillPaths);\n\t\t}\n\n\t\tif (promptPaths.length > 0) {\n\t\t\tthis.lastPromptPaths = this.mergePaths(\n\t\t\t\tthis.lastPromptPaths,\n\t\t\t\tpromptPaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updatePromptsFromPaths(this.lastPromptPaths, promptPaths);\n\t\t}\n\n\t\tif (themePaths.length > 0) {\n\t\t\tthis.lastThemePaths = this.mergePaths(\n\t\t\t\tthis.lastThemePaths,\n\t\t\t\tthemePaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updateThemesFromPaths(this.lastThemePaths, themePaths);\n\t\t}\n\t}\n\n\tasync reload(): Promise<void> {\n\t\tconst resolvedPaths = await this.packageManager.resolve();\n\t\tconst cliExtensionPaths = await this.packageManager.resolveExtensionSources(this.additionalExtensionPaths, {\n\t\t\ttemporary: true,\n\t\t});\n\n\t\t// Helper to extract enabled paths and store metadata\n\t\tconst getEnabledResources = (\n\t\t\tresources: Array<{ path: string; enabled: boolean; metadata: PathMetadata }>,\n\t\t): Array<{ path: string; enabled: boolean; metadata: PathMetadata }> => {\n\t\t\tfor (const r of resources) {\n\t\t\t\tif (!this.pathMetadata.has(r.path)) {\n\t\t\t\t\tthis.pathMetadata.set(r.path, r.metadata);\n\t\t\t\t}\n\t\t\t}\n\t\t\treturn resources.filter((r) => r.enabled);\n\t\t};\n\n\t\tconst getEnabledPaths = (\n\t\t\tresources: Array<{ path: string; enabled: boolean; metadata: PathMetadata }>,\n\t\t): string[] => getEnabledResources(resources).map((r) => r.path);\n\n\t\t// Store metadata and get enabled paths\n\t\tthis.pathMetadata = new Map();\n\t\tconst enabledExtensions = getEnabledPaths(resolvedPaths.extensions);\n\t\tconst enabledSkillResources = getEnabledResources(resolvedPaths.skills);\n\t\tconst enabledPrompts = getEnabledPaths(resolvedPaths.prompts);\n\t\tconst enabledThemes = getEnabledPaths(resolvedPaths.themes);\n\n\t\tconst mapSkillPath = (resource: { path: string; metadata: PathMetadata }): string => {\n\t\t\tif (resource.metadata.source !== \"auto\" && resource.metadata.origin !== \"package\") {\n\t\t\t\treturn resource.path;\n\t\t\t}\n\t\t\ttry {\n\t\t\t\tconst stats = statSync(resource.path);\n\t\t\t\tif (!stats.isDirectory()) {\n\t\t\t\t\treturn resource.path;\n\t\t\t\t}\n\t\t\t} catch {\n\t\t\t\treturn resource.path;\n\t\t\t}\n\t\t\tconst skillFile = join(resource.path, \"SKILL.md\");\n\t\t\tif (existsSync(skillFile)) {\n\t\t\t\tif (!this.pathMetadata.has(skillFile)) {\n\t\t\t\t\tthis.pathMetadata.set(skillFile, resource.metadata);\n\t\t\t\t}\n\t\t\t\treturn skillFile;\n\t\t\t}\n\t\t\treturn resource.path;\n\t\t};\n\n\t\tconst enabledSkills = enabledSkillResources.map(mapSkillPath);\n\n\t\t// Add CLI paths metadata\n\t\tfor (const r of cliExtensionPaths.extensions) {\n\t\t\tif (!this.pathMetadata.has(r.path)) {\n\t\t\t\tthis.pathMetadata.set(r.path, { source: \"cli\", scope: \"temporary\", origin: \"top-level\" });\n\t\t\t}\n\t\t}\n\t\tfor (const r of cliExtensionPaths.skills) {\n\t\t\tif (!this.pathMetadata.has(r.path)) {\n\t\t\t\tthis.pathMetadata.set(r.path, { source: \"cli\", scope: \"temporary\", origin: \"top-level\" });\n\t\t\t}\n\t\t}\n\n\t\tconst cliEnabledExtensions = getEnabledPaths(cliExtensionPaths.extensions);\n\t\tconst cliEnabledSkills = getEnabledPaths(cliExtensionPaths.skills);\n\t\tconst cliEnabledPrompts = getEnabledPaths(cliExtensionPaths.prompts);\n\t\tconst cliEnabledThemes = getEnabledPaths(cliExtensionPaths.themes);\n\n\t\tconst extensionPaths = this.noExtensions\n\t\t\t? cliEnabledExtensions\n\t\t\t: this.mergePaths(enabledExtensions, cliEnabledExtensions);\n\n\t\tconst extensionsResult = await loadExtensions(extensionPaths, this.cwd, this.eventBus);\n\t\tconst inlineExtensions = await this.loadExtensionFactories(extensionsResult.runtime);\n\t\textensionsResult.extensions.push(...inlineExtensions.extensions);\n\t\textensionsResult.errors.push(...inlineExtensions.errors);\n\n\t\t// Detect extension conflicts (tools, commands, flags with same names from different extensions)\n\t\tconst conflicts = this.detectExtensionConflicts(extensionsResult.extensions);\n\t\tif (conflicts.length > 0) {\n\t\t\tconst conflictingPaths = new Set(conflicts.map((c) => c.path));\n\t\t\textensionsResult.extensions = extensionsResult.extensions.filter((ext) => !conflictingPaths.has(ext.path));\n\t\t\tfor (const conflict of conflicts) {\n\t\t\t\textensionsResult.errors.push({ path: conflict.path, error: conflict.message });\n\t\t\t}\n\t\t}\n\n\t\tthis.extensionsResult = this.extensionsOverride ? this.extensionsOverride(extensionsResult) : extensionsResult;\n\n\t\tconst skillPaths = this.noSkills\n\t\t\t? this.mergePaths(cliEnabledSkills, this.additionalSkillPaths)\n\t\t\t: this.mergePaths([...enabledSkills, ...cliEnabledSkills], this.additionalSkillPaths);\n\n\t\tthis.lastSkillPaths = skillPaths;\n\t\tthis.updateSkillsFromPaths(skillPaths);\n\n\t\tconst promptPaths = this.noPromptTemplates\n\t\t\t? this.mergePaths(cliEnabledPrompts, this.additionalPromptTemplatePaths)\n\t\t\t: this.mergePaths([...enabledPrompts, ...cliEnabledPrompts], this.additionalPromptTemplatePaths);\n\n\t\tthis.lastPromptPaths = promptPaths;\n\t\tthis.updatePromptsFromPaths(promptPaths);\n\n\t\tconst themePaths = this.noThemes\n\t\t\t? this.mergePaths(cliEnabledThemes, this.additionalThemePaths)\n\t\t\t: this.mergePaths([...enabledThemes, ...cliEnabledThemes], this.additionalThemePaths);\n\n\t\tthis.lastThemePaths = themePaths;\n\t\tthis.updateThemesFromPaths(themePaths);\n\n\t\tfor (const extension of this.extensionsResult.extensions) {\n\t\t\tthis.addDefaultMetadataForPath(extension.path);\n\t\t}\n\n\t\tconst agentsFiles = { agentsFiles: loadProjectContextFiles({ cwd: this.cwd, agentDir: this.agentDir }) };\n\t\tconst resolvedAgentsFiles = this.agentsFilesOverride ? this.agentsFilesOverride(agentsFiles) : agentsFiles;\n\t\tthis.agentsFiles = resolvedAgentsFiles.agentsFiles;\n\n\t\tconst baseSystemPrompt = resolvePromptInput(\n\t\t\tthis.systemPromptSource ?? this.discoverSystemPromptFile(),\n\t\t\t\"system prompt\",\n\t\t);\n\t\tthis.systemPrompt = this.systemPromptOverride ? this.systemPromptOverride(baseSystemPrompt) : baseSystemPrompt;\n\n\t\tconst appendSource = this.appendSystemPromptSource ?? this.discoverAppendSystemPromptFile();\n\t\tconst resolvedAppend = resolvePromptInput(appendSource, \"append system prompt\");\n\t\tconst baseAppend = resolvedAppend ? [resolvedAppend] : [];\n\t\tthis.appendSystemPrompt = this.appendSystemPromptOverride\n\t\t\t? this.appendSystemPromptOverride(baseAppend)\n\t\t\t: baseAppend;\n\t}\n\n\tprivate normalizeExtensionPaths(\n\t\tentries: Array<{ path: string; metadata: PathMetadata }>,\n\t): Array<{ path: string; metadata: PathMetadata }> {\n\t\treturn entries.map((entry) => ({\n\t\t\tpath: this.resolveResourcePath(entry.path),\n\t\t\tmetadata: entry.metadata,\n\t\t}));\n\t}\n\n\tprivate updateSkillsFromPaths(\n\t\tskillPaths: string[],\n\t\textensionPaths: Array<{ path: string; metadata: PathMetadata }> = [],\n\t): void {\n\t\tlet skillsResult: { skills: Skill[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noSkills && skillPaths.length === 0) {\n\t\t\tskillsResult = { skills: [], diagnostics: [] };\n\t\t} else {\n\t\t\tskillsResult = loadSkills({\n\t\t\t\tcwd: this.cwd,\n\t\t\t\tagentDir: this.agentDir,\n\t\t\t\tskillPaths,\n\t\t\t\tincludeDefaults: false,\n\t\t\t});\n\t\t}\n\t\tconst resolvedSkills = this.skillsOverride ? this.skillsOverride(skillsResult) : skillsResult;\n\t\tthis.skills = resolvedSkills.skills;\n\t\tthis.skillDiagnostics = resolvedSkills.diagnostics;\n\t\tthis.applyExtensionMetadata(\n\t\t\textensionPaths,\n\t\t\tthis.skills.map((skill) => skill.filePath),\n\t\t);\n\t\tfor (const skill of this.skills) {\n\t\t\tthis.addDefaultMetadataForPath(skill.filePath);\n\t\t}\n\t}\n\n\tprivate updatePromptsFromPaths(\n\t\tpromptPaths: string[],\n\t\textensionPaths: Array<{ path: string; metadata: PathMetadata }> = [],\n\t): void {\n\t\tlet promptsResult: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noPromptTemplates && promptPaths.length === 0) {\n\t\t\tpromptsResult = { prompts: [], diagnostics: [] };\n\t\t} else {\n\t\t\tconst allPrompts = loadPromptTemplates({\n\t\t\t\tcwd: this.cwd,\n\t\t\t\tagentDir: this.agentDir,\n\t\t\t\tpromptPaths,\n\t\t\t\tincludeDefaults: false,\n\t\t\t});\n\t\t\tpromptsResult = this.dedupePrompts(allPrompts);\n\t\t}\n\t\tconst resolvedPrompts = this.promptsOverride ? this.promptsOverride(promptsResult) : promptsResult;\n\t\tthis.prompts = resolvedPrompts.prompts;\n\t\tthis.promptDiagnostics = resolvedPrompts.diagnostics;\n\t\tthis.applyExtensionMetadata(\n\t\t\textensionPaths,\n\t\t\tthis.prompts.map((prompt) => prompt.filePath),\n\t\t);\n\t\tfor (const prompt of this.prompts) {\n\t\t\tthis.addDefaultMetadataForPath(prompt.filePath);\n\t\t}\n\t}\n\n\tprivate updateThemesFromPaths(\n\t\tthemePaths: string[],\n\t\textensionPaths: Array<{ path: string; metadata: PathMetadata }> = [],\n\t): void {\n\t\tlet themesResult: { themes: Theme[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noThemes && themePaths.length === 0) {\n\t\t\tthemesResult = { themes: [], diagnostics: [] };\n\t\t} else {\n\t\t\tconst loaded = this.loadThemes(themePaths, false);\n\t\t\tconst deduped = this.dedupeThemes(loaded.themes);\n\t\t\tthemesResult = { themes: deduped.themes, diagnostics: [...loaded.diagnostics, ...deduped.diagnostics] };\n\t\t}\n\t\tconst resolvedThemes = this.themesOverride ? this.themesOverride(themesResult) : themesResult;\n\t\tthis.themes = resolvedThemes.themes;\n\t\tthis.themeDiagnostics = resolvedThemes.diagnostics;\n\t\tconst themePathsWithSource = this.themes.flatMap((theme) => (theme.sourcePath ? [theme.sourcePath] : []));\n\t\tthis.applyExtensionMetadata(extensionPaths, themePathsWithSource);\n\t\tfor (const theme of this.themes) {\n\t\t\tif (theme.sourcePath) {\n\t\t\t\tthis.addDefaultMetadataForPath(theme.sourcePath);\n\t\t\t}\n\t\t}\n\t}\n\n\tprivate applyExtensionMetadata(\n\t\textensionPaths: Array<{ path: string; metadata: PathMetadata }>,\n\t\tresourcePaths: string[],\n\t): void {\n\t\tif (extensionPaths.length === 0) {\n\t\t\treturn;\n\t\t}\n\n\t\tconst normalized = extensionPaths.map((entry) => ({\n\t\t\tpath: resolve(entry.path),\n\t\t\tmetadata: entry.metadata,\n\t\t}));\n\n\t\tfor (const entry of normalized) {\n\t\t\tif (!this.pathMetadata.has(entry.path)) {\n\t\t\t\tthis.pathMetadata.set(entry.path, entry.metadata);\n\t\t\t}\n\t\t}\n\n\t\tfor (const resourcePath of resourcePaths) {\n\t\t\tconst normalizedResourcePath = resolve(resourcePath);\n\t\t\tif (this.pathMetadata.has(normalizedResourcePath) || this.pathMetadata.has(resourcePath)) {\n\t\t\t\tcontinue;\n\t\t\t}\n\t\t\tconst match = normalized.find(\n\t\t\t\t(entry) =>\n\t\t\t\t\tnormalizedResourcePath === entry.path || normalizedResourcePath.startsWith(`${entry.path}${sep}`),\n\t\t\t);\n\t\t\tif (match) {\n\t\t\t\tthis.pathMetadata.set(normalizedResourcePath, match.metadata);\n\t\t\t}\n\t\t}\n\t}\n\n\tprivate mergePaths(primary: string[], additional: string[]): string[] {\n\t\tconst merged: string[] = [];\n\t\tconst seen = new Set<string>();\n\n\t\tfor (const p of [...primary, ...additional]) {\n\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\tif (seen.has(resolved)) continue;\n\t\t\tseen.add(resolved);\n\t\t\tmerged.push(resolved);\n\t\t}\n\n\t\treturn merged;\n\t}\n\n\tprivate resolveResourcePath(p: string): string {\n\t\tconst trimmed = p.trim();\n\t\tlet expanded = trimmed;\n\t\tif (trimmed === \"~\") {\n\t\t\texpanded = homedir();\n\t\t} else if (trimmed.startsWith(\"~/\")) {\n\t\t\texpanded = join(homedir(), trimmed.slice(2));\n\t\t} else if (trimmed.startsWith(\"~\")) {\n\t\t\texpanded = join(homedir(), trimmed.slice(1));\n\t\t}\n\t\treturn resolve(this.cwd, expanded);\n\t}\n\n\tprivate loadThemes(\n\t\tpaths: string[],\n\t\tincludeDefaults: boolean = true,\n\t): {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t} {\n\t\tconst themes: Theme[] = [];\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\t\tif (includeDefaults) {\n\t\t\tconst defaultDirs = [join(this.agentDir, \"themes\"), join(this.cwd, CONFIG_DIR_NAME, \"themes\")];\n\n\t\t\tfor (const dir of defaultDirs) {\n\t\t\t\tthis.loadThemesFromDir(dir, themes, diagnostics);\n\t\t\t}\n\t\t}\n\n\t\tfor (const p of paths) {\n\t\t\tconst resolved = resolve(this.cwd, p);\n\t\t\tif (!existsSync(resolved)) {\n\t\t\t\tdiagnostics.push({ type: \"warning\", message: \"theme path does not exist\", path: resolved });\n\t\t\t\tcontinue;\n\t\t\t}\n\n\t\t\ttry {\n\t\t\t\tconst stats = statSync(resolved);\n\t\t\t\tif (stats.isDirectory()) {\n\t\t\t\t\tthis.loadThemesFromDir(resolved, themes, diagnostics);\n\t\t\t\t} else if (stats.isFile() && resolved.endsWith(\".json\")) {\n\t\t\t\t\tthis.loadThemeFromFile(resolved, themes, diagnostics);\n\t\t\t\t} else {\n\t\t\t\t\tdiagnostics.push({ type: \"warning\", message: \"theme path is not a json file\", path: resolved });\n\t\t\t\t}\n\t\t\t} catch (error) {\n\t\t\t\tconst message = error instanceof Error ? error.message : \"failed to read theme path\";\n\t\t\t\tdiagnostics.push({ type: \"warning\", message, path: resolved });\n\t\t\t}\n\t\t}\n\n\t\treturn { themes, diagnostics };\n\t}\n\n\tprivate loadThemesFromDir(dir: string, themes: Theme[], diagnostics: ResourceDiagnostic[]): void {\n\t\tif (!existsSync(dir)) {\n\t\t\treturn;\n\t\t}\n\n\t\ttry {\n\t\t\tconst entries = readdirSync(dir, { withFileTypes: true });\n\t\t\tfor (const entry of entries) {\n\t\t\t\tlet isFile = entry.isFile();\n\t\t\t\tif (entry.isSymbolicLink()) {\n\t\t\t\t\ttry {\n\t\t\t\t\t\tisFile = statSync(join(dir, entry.name)).isFile();\n\t\t\t\t\t} catch {\n\t\t\t\t\t\tcontinue;\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t\tif (!isFile) {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t\tif (!entry.name.endsWith(\".json\")) {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t\tthis.loadThemeFromFile(join(dir, entry.name), themes, diagnostics);\n\t\t\t}\n\t\t} catch (error) {\n\t\t\tconst message = error instanceof Error ? error.message : \"failed to read theme directory\";\n\t\t\tdiagnostics.push({ type: \"warning\", message, path: dir });\n\t\t}\n\t}\n\n\tprivate loadThemeFromFile(filePath: string, themes: Theme[], diagnostics: ResourceDiagnostic[]): void {\n\t\ttry {\n\t\t\tthemes.push(loadThemeFromPath(filePath));\n\t\t} catch (error) {\n\t\t\tconst message = error instanceof Error ? error.message : \"failed to load theme\";\n\t\t\tdiagnostics.push({ type: \"warning\", message, path: filePath });\n\t\t}\n\t}\n\n\tprivate async loadExtensionFactories(runtime: ExtensionRuntime): Promise<{\n\t\textensions: Extension[];\n\t\terrors: Array<{ path: string; error: string }>;\n\t}> {\n\t\tconst extensions: Extension[] = [];\n\t\tconst errors: Array<{ path: string; error: string }> = [];\n\n\t\tfor (const [index, factory] of this.extensionFactories.entries()) {\n\t\t\tconst extensionPath = `<inline:${index + 1}>`;\n\t\t\ttry {\n\t\t\t\tconst extension = await loadExtensionFromFactory(factory, this.cwd, this.eventBus, runtime, extensionPath);\n\t\t\t\textensions.push(extension);\n\t\t\t} catch (error) {\n\t\t\t\tconst message = error instanceof Error ? error.message : \"failed to load extension\";\n\t\t\t\terrors.push({ path: extensionPath, error: message });\n\t\t\t}\n\t\t}\n\n\t\treturn { extensions, errors };\n\t}\n\n\tprivate dedupePrompts(prompts: PromptTemplate[]): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] } {\n\t\tconst seen = new Map<string, PromptTemplate>();\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\n\t\tfor (const prompt of prompts) {\n\t\t\tconst existing = seen.get(prompt.name);\n\t\t\tif (existing) {\n\t\t\t\tdiagnostics.push({\n\t\t\t\t\ttype: \"collision\",\n\t\t\t\t\tmessage: `name \"/${prompt.name}\" collision`,\n\t\t\t\t\tpath: prompt.filePath,\n\t\t\t\t\tcollision: {\n\t\t\t\t\t\tresourceType: \"prompt\",\n\t\t\t\t\t\tname: prompt.name,\n\t\t\t\t\t\twinnerPath: existing.filePath,\n\t\t\t\t\t\tloserPath: prompt.filePath,\n\t\t\t\t\t},\n\t\t\t\t});\n\t\t\t} else {\n\t\t\t\tseen.set(prompt.name, prompt);\n\t\t\t}\n\t\t}\n\n\t\treturn { prompts: Array.from(seen.values()), diagnostics };\n\t}\n\n\tprivate dedupeThemes(themes: Theme[]): { themes: Theme[]; diagnostics: ResourceDiagnostic[] } {\n\t\tconst seen = new Map<string, Theme>();\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\n\t\tfor (const t of themes) {\n\t\t\tconst name = t.name ?? \"unnamed\";\n\t\t\tconst existing = seen.get(name);\n\t\t\tif (existing) {\n\t\t\t\tdiagnostics.push({\n\t\t\t\t\ttype: \"collision\",\n\t\t\t\t\tmessage: `name \"${name}\" collision`,\n\t\t\t\t\tpath: t.sourcePath,\n\t\t\t\t\tcollision: {\n\t\t\t\t\t\tresourceType: \"theme\",\n\t\t\t\t\t\tname,\n\t\t\t\t\t\twinnerPath: existing.sourcePath ?? \"<builtin>\",\n\t\t\t\t\t\tloserPath: t.sourcePath ?? \"<builtin>\",\n\t\t\t\t\t},\n\t\t\t\t});\n\t\t\t} else {\n\t\t\t\tseen.set(name, t);\n\t\t\t}\n\t\t}\n\n\t\treturn { themes: Array.from(seen.values()), diagnostics };\n\t}\n\n\tprivate discoverSystemPromptFile(): string | undefined {\n\t\tconst projectPath = join(this.cwd, CONFIG_DIR_NAME, \"SYSTEM.md\");\n\t\tif (existsSync(projectPath)) {\n\t\t\treturn projectPath;\n\t\t}\n\n\t\tconst globalPath = join(this.agentDir, \"SYSTEM.md\");\n\t\tif (existsSync(globalPath)) {\n\t\t\treturn globalPath;\n\t\t}\n\n\t\treturn undefined;\n\t}\n\n\tprivate discoverAppendSystemPromptFile(): string | undefined {\n\t\tconst projectPath = join(this.cwd, CONFIG_DIR_NAME, \"APPEND_SYSTEM.md\");\n\t\tif (existsSync(projectPath)) {\n\t\t\treturn projectPath;\n\t\t}\n\n\t\tconst globalPath = join(this.agentDir, \"APPEND_SYSTEM.md\");\n\t\tif (existsSync(globalPath)) {\n\t\t\treturn globalPath;\n\t\t}\n\n\t\treturn undefined;\n\t}\n\n\tprivate addDefaultMetadataForPath(filePath: string): void {\n\t\tif (!filePath || filePath.startsWith(\"<\")) {\n\t\t\treturn;\n\t\t}\n\n\t\tconst normalizedPath = resolve(filePath);\n\t\tif (this.pathMetadata.has(normalizedPath) || this.pathMetadata.has(filePath)) {\n\t\t\treturn;\n\t\t}\n\n\t\tconst agentRoots = [\n\t\t\tjoin(this.agentDir, \"skills\"),\n\t\t\tjoin(this.agentDir, \"prompts\"),\n\t\t\tjoin(this.agentDir, \"themes\"),\n\t\t\tjoin(this.agentDir, \"extensions\"),\n\t\t];\n\t\tconst projectRoots = [\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"skills\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"prompts\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"themes\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"extensions\"),\n\t\t];\n\n\t\tfor (const root of agentRoots) {\n\t\t\tif (this.isUnderPath(normalizedPath, root)) {\n\t\t\t\tthis.pathMetadata.set(normalizedPath, { source: \"local\", scope: \"user\", origin: \"top-level\" });\n\t\t\t\treturn;\n\t\t\t}\n\t\t}\n\n\t\tfor (const root of projectRoots) {\n\t\t\tif (this.isUnderPath(normalizedPath, root)) {\n\t\t\t\tthis.pathMetadata.set(normalizedPath, { source: \"local\", scope: \"project\", origin: \"top-level\" });\n\t\t\t\treturn;\n\t\t\t}\n\t\t}\n\t}\n\n\tprivate isUnderPath(target: string, root: string): boolean {\n\t\tconst normalizedRoot = resolve(root);\n\t\tif (target === normalizedRoot) {\n\t\t\treturn true;\n\t\t}\n\t\tconst prefix = normalizedRoot.endsWith(sep) ? normalizedRoot : `${normalizedRoot}${sep}`;\n\t\treturn target.startsWith(prefix);\n\t}\n\n\tprivate detectExtensionConflicts(extensions: Extension[]): Array<{ path: string; message: string }> {\n\t\tconst conflicts: Array<{ path: string; message: string }> = [];\n\n\t\t// Track which extension registered each tool, command, and flag\n\t\tconst toolOwners = new Map<string, string>();\n\t\tconst commandOwners = new Map<string, string>();\n\t\tconst flagOwners = new Map<string, string>();\n\n\t\tfor (const ext of extensions) {\n\t\t\t// Check tools\n\t\t\tfor (const toolName of ext.tools.keys()) {\n\t\t\t\tconst existingOwner = toolOwners.get(toolName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Tool \"${toolName}\" conflicts with ${existingOwner}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\ttoolOwners.set(toolName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\n\t\t\t// Check commands\n\t\t\tfor (const commandName of ext.commands.keys()) {\n\t\t\t\tconst existingOwner = commandOwners.get(commandName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Command \"/${commandName}\" conflicts with ${existingOwner}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\tcommandOwners.set(commandName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\n\t\t\t// Check flags\n\t\t\tfor (const flagName of ext.flags.keys()) {\n\t\t\t\tconst existingOwner = flagOwners.get(flagName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Flag \"--${flagName}\" conflicts with ${existingOwner}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\tflagOwners.set(flagName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\treturn conflicts;\n\t}\n}\n"]}
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{ existsSync, readdirSync, readFileSync, statSync } from \"node:fs\";\nimport { homedir } from \"node:os\";\nimport { join, resolve, sep } from \"node:path\";\nimport chalk from \"chalk\";\nimport { CONFIG_DIR_NAME, getAgentDir } from \"../config.js\";\nimport { loadThemeFromPath, type Theme } from \"../modes/interactive/theme/theme.js\";\nimport type { ResourceDiagnostic } from \"./diagnostics.js\";\n\nexport type { ResourceCollision, ResourceDiagnostic } from \"./diagnostics.js\";\n\nimport { createEventBus, type EventBus } from \"./event-bus.js\";\nimport { createExtensionRuntime, loadExtensionFromFactory, loadExtensions } from \"./extensions/loader.js\";\nimport type { Extension, ExtensionFactory, ExtensionRuntime, LoadExtensionsResult } from \"./extensions/types.js\";\nimport { DefaultPackageManager, type PathMetadata } from \"./package-manager.js\";\nimport type { PromptTemplate } from \"./prompt-templates.js\";\nimport { loadPromptTemplates } from \"./prompt-templates.js\";\nimport { SettingsManager } from \"./settings-manager.js\";\nimport type { Skill } from \"./skills.js\";\nimport { loadSkills } from \"./skills.js\";\n\nexport interface ResourceExtensionPaths {\n\tskillPaths?: Array<{ path: string; metadata: PathMetadata }>;\n\tpromptPaths?: Array<{ path: string; metadata: PathMetadata }>;\n\tthemePaths?: Array<{ path: string; metadata: PathMetadata }>;\n}\n\nexport interface ResourceLoader {\n\tgetExtensions(): LoadExtensionsResult;\n\tgetSkills(): { skills: Skill[]; diagnostics: ResourceDiagnostic[] };\n\tgetPrompts(): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] };\n\tgetThemes(): { themes: Theme[]; diagnostics: ResourceDiagnostic[] };\n\tgetAgentsFiles(): { agentsFiles: Array<{ path: string; content: string }> };\n\tgetSystemPrompt(): string | undefined;\n\tgetAppendSystemPrompt(): string[];\n\tgetPathMetadata(): Map<string, PathMetadata>;\n\textendResources(paths: ResourceExtensionPaths): void;\n\treload(): Promise<void>;\n}\n\nfunction resolvePromptInput(input: string | undefined, description: string): string | undefined {\n\tif (!input) {\n\t\treturn undefined;\n\t}\n\n\tif (existsSync(input)) {\n\t\ttry {\n\t\t\treturn readFileSync(input, \"utf-8\");\n\t\t} catch (error) {\n\t\t\tconsole.error(chalk.yellow(`Warning: Could not read ${description} file ${input}: ${error}`));\n\t\t\treturn input;\n\t\t}\n\t}\n\n\treturn input;\n}\n\nfunction loadContextFileFromDir(dir: string): { path: string; content: string } | null {\n\tconst candidates = [\"AGENTS.md\", \"CLAUDE.md\"];\n\tfor (const filename of candidates) {\n\t\tconst filePath = join(dir, filename);\n\t\tif (existsSync(filePath)) {\n\t\t\ttry {\n\t\t\t\treturn {\n\t\t\t\t\tpath: filePath,\n\t\t\t\t\tcontent: readFileSync(filePath, \"utf-8\"),\n\t\t\t\t};\n\t\t\t} catch (error) {\n\t\t\t\tconsole.error(chalk.yellow(`Warning: Could not read ${filePath}: ${error}`));\n\t\t\t}\n\t\t}\n\t}\n\treturn null;\n}\n\nfunction loadProjectContextFiles(\n\toptions: { cwd?: string; agentDir?: string } = {},\n): Array<{ path: string; content: string }> {\n\tconst resolvedCwd = options.cwd ?? process.cwd();\n\tconst resolvedAgentDir = options.agentDir ?? getAgentDir();\n\n\tconst contextFiles: Array<{ path: string; content: string }> = [];\n\tconst seenPaths = new Set<string>();\n\n\tconst globalContext = loadContextFileFromDir(resolvedAgentDir);\n\tif (globalContext) {\n\t\tcontextFiles.push(globalContext);\n\t\tseenPaths.add(globalContext.path);\n\t}\n\n\tconst ancestorContextFiles: Array<{ path: string; content: string }> = [];\n\n\tlet currentDir = resolvedCwd;\n\tconst root = resolve(\"/\");\n\n\twhile (true) {\n\t\tconst contextFile = loadContextFileFromDir(currentDir);\n\t\tif (contextFile && !seenPaths.has(contextFile.path)) {\n\t\t\tancestorContextFiles.unshift(contextFile);\n\t\t\tseenPaths.add(contextFile.path);\n\t\t}\n\n\t\tif (currentDir === root) break;\n\n\t\tconst parentDir = resolve(currentDir, \"..\");\n\t\tif (parentDir === currentDir) break;\n\t\tcurrentDir = parentDir;\n\t}\n\n\tcontextFiles.push(...ancestorContextFiles);\n\n\treturn contextFiles;\n}\n\nexport interface DefaultResourceLoaderOptions {\n\tcwd?: string;\n\tagentDir?: string;\n\tsettingsManager?: SettingsManager;\n\teventBus?: EventBus;\n\tadditionalExtensionPaths?: string[];\n\tadditionalSkillPaths?: string[];\n\tadditionalPromptTemplatePaths?: string[];\n\tadditionalThemePaths?: string[];\n\textensionFactories?: ExtensionFactory[];\n\tnoExtensions?: boolean;\n\tnoSkills?: boolean;\n\tnoPromptTemplates?: boolean;\n\tnoThemes?: boolean;\n\tsystemPrompt?: string;\n\tappendSystemPrompt?: string;\n\textensionsOverride?: (base: LoadExtensionsResult) => LoadExtensionsResult;\n\tskillsOverride?: (base: { skills: Skill[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tskills: Skill[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tpromptsOverride?: (base: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tprompts: PromptTemplate[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tthemesOverride?: (base: { themes: Theme[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tagentsFilesOverride?: (base: { agentsFiles: Array<{ path: string; content: string }> }) => {\n\t\tagentsFiles: Array<{ path: string; content: string }>;\n\t};\n\tsystemPromptOverride?: (base: string | undefined) => string | undefined;\n\tappendSystemPromptOverride?: (base: string[]) => string[];\n}\n\nexport class DefaultResourceLoader implements ResourceLoader {\n\tprivate cwd: string;\n\tprivate agentDir: string;\n\tprivate settingsManager: SettingsManager;\n\tprivate eventBus: EventBus;\n\tprivate packageManager: DefaultPackageManager;\n\tprivate additionalExtensionPaths: string[];\n\tprivate additionalSkillPaths: string[];\n\tprivate additionalPromptTemplatePaths: string[];\n\tprivate additionalThemePaths: string[];\n\tprivate extensionFactories: ExtensionFactory[];\n\tprivate noExtensions: boolean;\n\tprivate noSkills: boolean;\n\tprivate noPromptTemplates: boolean;\n\tprivate noThemes: boolean;\n\tprivate systemPromptSource?: string;\n\tprivate appendSystemPromptSource?: string;\n\tprivate extensionsOverride?: (base: LoadExtensionsResult) => LoadExtensionsResult;\n\tprivate skillsOverride?: (base: { skills: Skill[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tskills: Skill[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate promptsOverride?: (base: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tprompts: PromptTemplate[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate themesOverride?: (base: { themes: Theme[]; diagnostics: ResourceDiagnostic[] }) => {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t};\n\tprivate agentsFilesOverride?: (base: { agentsFiles: Array<{ path: string; content: string }> }) => {\n\t\tagentsFiles: Array<{ path: string; content: string }>;\n\t};\n\tprivate systemPromptOverride?: (base: string | undefined) => string | undefined;\n\tprivate appendSystemPromptOverride?: (base: string[]) => string[];\n\n\tprivate extensionsResult: LoadExtensionsResult;\n\tprivate skills: Skill[];\n\tprivate skillDiagnostics: ResourceDiagnostic[];\n\tprivate prompts: PromptTemplate[];\n\tprivate promptDiagnostics: ResourceDiagnostic[];\n\tprivate themes: Theme[];\n\tprivate themeDiagnostics: ResourceDiagnostic[];\n\tprivate agentsFiles: Array<{ path: string; content: string }>;\n\tprivate systemPrompt?: string;\n\tprivate appendSystemPrompt: string[];\n\tprivate pathMetadata: Map<string, PathMetadata>;\n\tprivate lastSkillPaths: string[];\n\tprivate lastPromptPaths: string[];\n\tprivate lastThemePaths: string[];\n\n\tconstructor(options: DefaultResourceLoaderOptions) {\n\t\tthis.cwd = options.cwd ?? process.cwd();\n\t\tthis.agentDir = options.agentDir ?? getAgentDir();\n\t\tthis.settingsManager = options.settingsManager ?? SettingsManager.create(this.cwd, this.agentDir);\n\t\tthis.eventBus = options.eventBus ?? createEventBus();\n\t\tthis.packageManager = new DefaultPackageManager({\n\t\t\tcwd: this.cwd,\n\t\t\tagentDir: this.agentDir,\n\t\t\tsettingsManager: this.settingsManager,\n\t\t});\n\t\tthis.additionalExtensionPaths = options.additionalExtensionPaths ?? [];\n\t\tthis.additionalSkillPaths = options.additionalSkillPaths ?? [];\n\t\tthis.additionalPromptTemplatePaths = options.additionalPromptTemplatePaths ?? [];\n\t\tthis.additionalThemePaths = options.additionalThemePaths ?? [];\n\t\tthis.extensionFactories = options.extensionFactories ?? [];\n\t\tthis.noExtensions = options.noExtensions ?? false;\n\t\tthis.noSkills = options.noSkills ?? false;\n\t\tthis.noPromptTemplates = options.noPromptTemplates ?? false;\n\t\tthis.noThemes = options.noThemes ?? false;\n\t\tthis.systemPromptSource = options.systemPrompt;\n\t\tthis.appendSystemPromptSource = options.appendSystemPrompt;\n\t\tthis.extensionsOverride = options.extensionsOverride;\n\t\tthis.skillsOverride = options.skillsOverride;\n\t\tthis.promptsOverride = options.promptsOverride;\n\t\tthis.themesOverride = options.themesOverride;\n\t\tthis.agentsFilesOverride = options.agentsFilesOverride;\n\t\tthis.systemPromptOverride = options.systemPromptOverride;\n\t\tthis.appendSystemPromptOverride = options.appendSystemPromptOverride;\n\n\t\tthis.extensionsResult = { extensions: [], errors: [], runtime: createExtensionRuntime() };\n\t\tthis.skills = [];\n\t\tthis.skillDiagnostics = [];\n\t\tthis.prompts = [];\n\t\tthis.promptDiagnostics = [];\n\t\tthis.themes = [];\n\t\tthis.themeDiagnostics = [];\n\t\tthis.agentsFiles = [];\n\t\tthis.appendSystemPrompt = [];\n\t\tthis.pathMetadata = new Map();\n\t\tthis.lastSkillPaths = [];\n\t\tthis.lastPromptPaths = [];\n\t\tthis.lastThemePaths = [];\n\t}\n\n\tgetExtensions(): LoadExtensionsResult {\n\t\treturn this.extensionsResult;\n\t}\n\n\tgetSkills(): { skills: Skill[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { skills: this.skills, diagnostics: this.skillDiagnostics };\n\t}\n\n\tgetPrompts(): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { prompts: this.prompts, diagnostics: this.promptDiagnostics };\n\t}\n\n\tgetThemes(): { themes: Theme[]; diagnostics: ResourceDiagnostic[] } {\n\t\treturn { themes: this.themes, diagnostics: this.themeDiagnostics };\n\t}\n\n\tgetAgentsFiles(): { agentsFiles: Array<{ path: string; content: string }> } {\n\t\treturn { agentsFiles: this.agentsFiles };\n\t}\n\n\tgetSystemPrompt(): string | undefined {\n\t\treturn this.systemPrompt;\n\t}\n\n\tgetAppendSystemPrompt(): string[] {\n\t\treturn this.appendSystemPrompt;\n\t}\n\n\tgetPathMetadata(): Map<string, PathMetadata> {\n\t\treturn this.pathMetadata;\n\t}\n\n\textendResources(paths: ResourceExtensionPaths): void {\n\t\tconst skillPaths = this.normalizeExtensionPaths(paths.skillPaths ?? []);\n\t\tconst promptPaths = this.normalizeExtensionPaths(paths.promptPaths ?? []);\n\t\tconst themePaths = this.normalizeExtensionPaths(paths.themePaths ?? []);\n\n\t\tif (skillPaths.length > 0) {\n\t\t\tthis.lastSkillPaths = this.mergePaths(\n\t\t\t\tthis.lastSkillPaths,\n\t\t\t\tskillPaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updateSkillsFromPaths(this.lastSkillPaths, skillPaths);\n\t\t}\n\n\t\tif (promptPaths.length > 0) {\n\t\t\tthis.lastPromptPaths = this.mergePaths(\n\t\t\t\tthis.lastPromptPaths,\n\t\t\t\tpromptPaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updatePromptsFromPaths(this.lastPromptPaths, promptPaths);\n\t\t}\n\n\t\tif (themePaths.length > 0) {\n\t\t\tthis.lastThemePaths = this.mergePaths(\n\t\t\t\tthis.lastThemePaths,\n\t\t\t\tthemePaths.map((entry) => entry.path),\n\t\t\t);\n\t\t\tthis.updateThemesFromPaths(this.lastThemePaths, themePaths);\n\t\t}\n\t}\n\n\tasync reload(): Promise<void> {\n\t\tconst resolvedPaths = await this.packageManager.resolve();\n\t\tconst cliExtensionPaths = await this.packageManager.resolveExtensionSources(this.additionalExtensionPaths, {\n\t\t\ttemporary: true,\n\t\t});\n\n\t\t// Helper to extract enabled paths and store metadata\n\t\tconst getEnabledResources = (\n\t\t\tresources: Array<{ path: string; enabled: boolean; metadata: PathMetadata }>,\n\t\t): Array<{ path: string; enabled: boolean; metadata: PathMetadata }> => {\n\t\t\tfor (const r of resources) {\n\t\t\t\tif (!this.pathMetadata.has(r.path)) {\n\t\t\t\t\tthis.pathMetadata.set(r.path, r.metadata);\n\t\t\t\t}\n\t\t\t}\n\t\t\treturn resources.filter((r) => r.enabled);\n\t\t};\n\n\t\tconst getEnabledPaths = (\n\t\t\tresources: Array<{ path: string; enabled: boolean; metadata: PathMetadata }>,\n\t\t): string[] => getEnabledResources(resources).map((r) => r.path);\n\n\t\t// Store metadata and get enabled paths\n\t\tthis.pathMetadata = new Map();\n\t\tconst enabledExtensions = getEnabledPaths(resolvedPaths.extensions);\n\t\tconst enabledSkillResources = getEnabledResources(resolvedPaths.skills);\n\t\tconst enabledCommands = getEnabledPaths(resolvedPaths.commands);\n\t\tconst enabledThemes = getEnabledPaths(resolvedPaths.themes);\n\n\t\tconst mapSkillPath = (resource: { path: string; metadata: PathMetadata }): string => {\n\t\t\tif (resource.metadata.source !== \"auto\" && resource.metadata.origin !== \"package\") {\n\t\t\t\treturn resource.path;\n\t\t\t}\n\t\t\ttry {\n\t\t\t\tconst stats = statSync(resource.path);\n\t\t\t\tif (!stats.isDirectory()) {\n\t\t\t\t\treturn resource.path;\n\t\t\t\t}\n\t\t\t} catch {\n\t\t\t\treturn resource.path;\n\t\t\t}\n\t\t\tconst skillFile = join(resource.path, \"SKILL.md\");\n\t\t\tif (existsSync(skillFile)) {\n\t\t\t\tif (!this.pathMetadata.has(skillFile)) {\n\t\t\t\t\tthis.pathMetadata.set(skillFile, resource.metadata);\n\t\t\t\t}\n\t\t\t\treturn skillFile;\n\t\t\t}\n\t\t\treturn resource.path;\n\t\t};\n\n\t\tconst enabledSkills = enabledSkillResources.map(mapSkillPath);\n\n\t\t// Add CLI paths metadata\n\t\tfor (const r of cliExtensionPaths.extensions) {\n\t\t\tif (!this.pathMetadata.has(r.path)) {\n\t\t\t\tthis.pathMetadata.set(r.path, { source: \"cli\", scope: \"temporary\", origin: \"top-level\" });\n\t\t\t}\n\t\t}\n\t\tfor (const r of cliExtensionPaths.skills) {\n\t\t\tif (!this.pathMetadata.has(r.path)) {\n\t\t\t\tthis.pathMetadata.set(r.path, { source: \"cli\", scope: \"temporary\", origin: \"top-level\" });\n\t\t\t}\n\t\t}\n\n\t\tconst cliEnabledExtensions = getEnabledPaths(cliExtensionPaths.extensions);\n\t\tconst cliEnabledSkills = getEnabledPaths(cliExtensionPaths.skills);\n\t\tconst cliEnabledCommands = getEnabledPaths(cliExtensionPaths.commands);\n\t\tconst cliEnabledThemes = getEnabledPaths(cliExtensionPaths.themes);\n\n\t\tconst extensionPaths = this.noExtensions\n\t\t\t? cliEnabledExtensions\n\t\t\t: this.mergePaths(enabledExtensions, cliEnabledExtensions);\n\n\t\tconst extensionsResult = await loadExtensions(extensionPaths, this.cwd, this.eventBus);\n\t\tconst inlineExtensions = await this.loadExtensionFactories(extensionsResult.runtime);\n\t\textensionsResult.extensions.push(...inlineExtensions.extensions);\n\t\textensionsResult.errors.push(...inlineExtensions.errors);\n\n\t\t// Detect extension conflicts (tools, commands, flags with same names from different extensions)\n\t\tconst conflicts = this.detectExtensionConflicts(extensionsResult.extensions);\n\t\tif (conflicts.length > 0) {\n\t\t\tconst conflictingPaths = new Set(conflicts.map((c) => c.path));\n\t\t\textensionsResult.extensions = extensionsResult.extensions.filter((ext) => !conflictingPaths.has(ext.path));\n\t\t\tfor (const conflict of conflicts) {\n\t\t\t\textensionsResult.errors.push({ path: conflict.path, error: conflict.message });\n\t\t\t}\n\t\t}\n\n\t\tthis.extensionsResult = this.extensionsOverride ? this.extensionsOverride(extensionsResult) : extensionsResult;\n\n\t\tconst skillPaths = this.noSkills\n\t\t\t? this.mergePaths(cliEnabledSkills, this.additionalSkillPaths)\n\t\t\t: this.mergePaths([...enabledSkills, ...cliEnabledSkills], this.additionalSkillPaths);\n\n\t\tthis.lastSkillPaths = skillPaths;\n\t\tthis.updateSkillsFromPaths(skillPaths);\n\n\t\tconst promptPaths = this.noPromptTemplates\n\t\t\t? this.mergePaths(cliEnabledCommands, this.additionalPromptTemplatePaths)\n\t\t\t: this.mergePaths([...enabledCommands, ...cliEnabledCommands], this.additionalPromptTemplatePaths);\n\n\t\tthis.lastPromptPaths = promptPaths;\n\t\tthis.updatePromptsFromPaths(promptPaths);\n\n\t\tconst themePaths = this.noThemes\n\t\t\t? this.mergePaths(cliEnabledThemes, this.additionalThemePaths)\n\t\t\t: this.mergePaths([...enabledThemes, ...cliEnabledThemes], this.additionalThemePaths);\n\n\t\tthis.lastThemePaths = themePaths;\n\t\tthis.updateThemesFromPaths(themePaths);\n\n\t\tfor (const extension of this.extensionsResult.extensions) {\n\t\t\tthis.addDefaultMetadataForPath(extension.path);\n\t\t}\n\n\t\tconst agentsFiles = { agentsFiles: loadProjectContextFiles({ cwd: this.cwd, agentDir: this.agentDir }) };\n\t\tconst resolvedAgentsFiles = this.agentsFilesOverride ? this.agentsFilesOverride(agentsFiles) : agentsFiles;\n\t\tthis.agentsFiles = resolvedAgentsFiles.agentsFiles;\n\n\t\tconst baseSystemPrompt = resolvePromptInput(\n\t\t\tthis.systemPromptSource ?? this.discoverSystemPromptFile(),\n\t\t\t\"system prompt\",\n\t\t);\n\t\tthis.systemPrompt = this.systemPromptOverride ? this.systemPromptOverride(baseSystemPrompt) : baseSystemPrompt;\n\n\t\tconst appendSource = this.appendSystemPromptSource ?? this.discoverAppendSystemPromptFile();\n\t\tconst resolvedAppend = resolvePromptInput(appendSource, \"append system prompt\");\n\t\tconst baseAppend = resolvedAppend ? [resolvedAppend] : [];\n\t\tthis.appendSystemPrompt = this.appendSystemPromptOverride\n\t\t\t? this.appendSystemPromptOverride(baseAppend)\n\t\t\t: baseAppend;\n\t}\n\n\tprivate normalizeExtensionPaths(\n\t\tentries: Array<{ path: string; metadata: PathMetadata }>,\n\t): Array<{ path: string; metadata: PathMetadata }> {\n\t\treturn entries.map((entry) => ({\n\t\t\tpath: this.resolveResourcePath(entry.path),\n\t\t\tmetadata: entry.metadata,\n\t\t}));\n\t}\n\n\tprivate updateSkillsFromPaths(\n\t\tskillPaths: string[],\n\t\textensionPaths: Array<{ path: string; metadata: PathMetadata }> = [],\n\t): void {\n\t\tlet skillsResult: { skills: Skill[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noSkills && skillPaths.length === 0) {\n\t\t\tskillsResult = { skills: [], diagnostics: [] };\n\t\t} else {\n\t\t\tskillsResult = loadSkills({\n\t\t\t\tcwd: this.cwd,\n\t\t\t\tagentDir: this.agentDir,\n\t\t\t\tskillPaths,\n\t\t\t\tincludeDefaults: false,\n\t\t\t});\n\t\t}\n\t\tconst resolvedSkills = this.skillsOverride ? this.skillsOverride(skillsResult) : skillsResult;\n\t\tthis.skills = resolvedSkills.skills;\n\t\tthis.skillDiagnostics = resolvedSkills.diagnostics;\n\t\tthis.applyExtensionMetadata(\n\t\t\textensionPaths,\n\t\t\tthis.skills.map((skill) => skill.filePath),\n\t\t);\n\t\tfor (const skill of this.skills) {\n\t\t\tthis.addDefaultMetadataForPath(skill.filePath);\n\t\t}\n\t}\n\n\tprivate updatePromptsFromPaths(\n\t\tpromptPaths: string[],\n\t\textensionPaths: Array<{ path: string; metadata: PathMetadata }> = [],\n\t): void {\n\t\tlet promptsResult: { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noPromptTemplates && promptPaths.length === 0) {\n\t\t\tpromptsResult = { prompts: [], diagnostics: [] };\n\t\t} else {\n\t\t\tconst allPrompts = loadPromptTemplates({\n\t\t\t\tcwd: this.cwd,\n\t\t\t\tagentDir: this.agentDir,\n\t\t\t\tpromptPaths,\n\t\t\t\tincludeDefaults: false,\n\t\t\t});\n\t\t\tpromptsResult = this.dedupePrompts(allPrompts);\n\t\t}\n\t\tconst resolvedPrompts = this.promptsOverride ? this.promptsOverride(promptsResult) : promptsResult;\n\t\tthis.prompts = resolvedPrompts.prompts;\n\t\tthis.promptDiagnostics = resolvedPrompts.diagnostics;\n\t\tthis.applyExtensionMetadata(\n\t\t\textensionPaths,\n\t\t\tthis.prompts.map((prompt) => prompt.filePath),\n\t\t);\n\t\tfor (const prompt of this.prompts) {\n\t\t\tthis.addDefaultMetadataForPath(prompt.filePath);\n\t\t}\n\t}\n\n\tprivate updateThemesFromPaths(\n\t\tthemePaths: string[],\n\t\textensionPaths: Array<{ path: string; metadata: PathMetadata }> = [],\n\t): void {\n\t\tlet themesResult: { themes: Theme[]; diagnostics: ResourceDiagnostic[] };\n\t\tif (this.noThemes && themePaths.length === 0) {\n\t\t\tthemesResult = { themes: [], diagnostics: [] };\n\t\t} else {\n\t\t\tconst loaded = this.loadThemes(themePaths, false);\n\t\t\tconst deduped = this.dedupeThemes(loaded.themes);\n\t\t\tthemesResult = { themes: deduped.themes, diagnostics: [...loaded.diagnostics, ...deduped.diagnostics] };\n\t\t}\n\t\tconst resolvedThemes = this.themesOverride ? this.themesOverride(themesResult) : themesResult;\n\t\tthis.themes = resolvedThemes.themes;\n\t\tthis.themeDiagnostics = resolvedThemes.diagnostics;\n\t\tconst themePathsWithSource = this.themes.flatMap((theme) => (theme.sourcePath ? [theme.sourcePath] : []));\n\t\tthis.applyExtensionMetadata(extensionPaths, themePathsWithSource);\n\t\tfor (const theme of this.themes) {\n\t\t\tif (theme.sourcePath) {\n\t\t\t\tthis.addDefaultMetadataForPath(theme.sourcePath);\n\t\t\t}\n\t\t}\n\t}\n\n\tprivate applyExtensionMetadata(\n\t\textensionPaths: Array<{ path: string; metadata: PathMetadata }>,\n\t\tresourcePaths: string[],\n\t): void {\n\t\tif (extensionPaths.length === 0) {\n\t\t\treturn;\n\t\t}\n\n\t\tconst normalized = extensionPaths.map((entry) => ({\n\t\t\tpath: resolve(entry.path),\n\t\t\tmetadata: entry.metadata,\n\t\t}));\n\n\t\tfor (const entry of normalized) {\n\t\t\tif (!this.pathMetadata.has(entry.path)) {\n\t\t\t\tthis.pathMetadata.set(entry.path, entry.metadata);\n\t\t\t}\n\t\t}\n\n\t\tfor (const resourcePath of resourcePaths) {\n\t\t\tconst normalizedResourcePath = resolve(resourcePath);\n\t\t\tif (this.pathMetadata.has(normalizedResourcePath) || this.pathMetadata.has(resourcePath)) {\n\t\t\t\tcontinue;\n\t\t\t}\n\t\t\tconst match = normalized.find(\n\t\t\t\t(entry) =>\n\t\t\t\t\tnormalizedResourcePath === entry.path || normalizedResourcePath.startsWith(`${entry.path}${sep}`),\n\t\t\t);\n\t\t\tif (match) {\n\t\t\t\tthis.pathMetadata.set(normalizedResourcePath, match.metadata);\n\t\t\t}\n\t\t}\n\t}\n\n\tprivate mergePaths(primary: string[], additional: string[]): string[] {\n\t\tconst merged: string[] = [];\n\t\tconst seen = new Set<string>();\n\n\t\tfor (const p of [...primary, ...additional]) {\n\t\t\tconst resolved = this.resolveResourcePath(p);\n\t\t\tif (seen.has(resolved)) continue;\n\t\t\tseen.add(resolved);\n\t\t\tmerged.push(resolved);\n\t\t}\n\n\t\treturn merged;\n\t}\n\n\tprivate resolveResourcePath(p: string): string {\n\t\tconst trimmed = p.trim();\n\t\tlet expanded = trimmed;\n\t\tif (trimmed === \"~\") {\n\t\t\texpanded = homedir();\n\t\t} else if (trimmed.startsWith(\"~/\")) {\n\t\t\texpanded = join(homedir(), trimmed.slice(2));\n\t\t} else if (trimmed.startsWith(\"~\")) {\n\t\t\texpanded = join(homedir(), trimmed.slice(1));\n\t\t}\n\t\treturn resolve(this.cwd, expanded);\n\t}\n\n\tprivate loadThemes(\n\t\tpaths: string[],\n\t\tincludeDefaults: boolean = true,\n\t): {\n\t\tthemes: Theme[];\n\t\tdiagnostics: ResourceDiagnostic[];\n\t} {\n\t\tconst themes: Theme[] = [];\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\t\tif (includeDefaults) {\n\t\t\tconst defaultDirs = [join(this.agentDir, \"themes\"), join(this.cwd, CONFIG_DIR_NAME, \"themes\")];\n\n\t\t\tfor (const dir of defaultDirs) {\n\t\t\t\tthis.loadThemesFromDir(dir, themes, diagnostics);\n\t\t\t}\n\t\t}\n\n\t\tfor (const p of paths) {\n\t\t\tconst resolved = resolve(this.cwd, p);\n\t\t\tif (!existsSync(resolved)) {\n\t\t\t\tdiagnostics.push({ type: \"warning\", message: \"theme path does not exist\", path: resolved });\n\t\t\t\tcontinue;\n\t\t\t}\n\n\t\t\ttry {\n\t\t\t\tconst stats = statSync(resolved);\n\t\t\t\tif (stats.isDirectory()) {\n\t\t\t\t\tthis.loadThemesFromDir(resolved, themes, diagnostics);\n\t\t\t\t} else if (stats.isFile() && resolved.endsWith(\".json\")) {\n\t\t\t\t\tthis.loadThemeFromFile(resolved, themes, diagnostics);\n\t\t\t\t} else {\n\t\t\t\t\tdiagnostics.push({ type: \"warning\", message: \"theme path is not a json file\", path: resolved });\n\t\t\t\t}\n\t\t\t} catch (error) {\n\t\t\t\tconst message = error instanceof Error ? error.message : \"failed to read theme path\";\n\t\t\t\tdiagnostics.push({ type: \"warning\", message, path: resolved });\n\t\t\t}\n\t\t}\n\n\t\treturn { themes, diagnostics };\n\t}\n\n\tprivate loadThemesFromDir(dir: string, themes: Theme[], diagnostics: ResourceDiagnostic[]): void {\n\t\tif (!existsSync(dir)) {\n\t\t\treturn;\n\t\t}\n\n\t\ttry {\n\t\t\tconst entries = readdirSync(dir, { withFileTypes: true });\n\t\t\tfor (const entry of entries) {\n\t\t\t\tlet isFile = entry.isFile();\n\t\t\t\tif (entry.isSymbolicLink()) {\n\t\t\t\t\ttry {\n\t\t\t\t\t\tisFile = statSync(join(dir, entry.name)).isFile();\n\t\t\t\t\t} catch {\n\t\t\t\t\t\tcontinue;\n\t\t\t\t\t}\n\t\t\t\t}\n\t\t\t\tif (!isFile) {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t\tif (!entry.name.endsWith(\".json\")) {\n\t\t\t\t\tcontinue;\n\t\t\t\t}\n\t\t\t\tthis.loadThemeFromFile(join(dir, entry.name), themes, diagnostics);\n\t\t\t}\n\t\t} catch (error) {\n\t\t\tconst message = error instanceof Error ? error.message : \"failed to read theme directory\";\n\t\t\tdiagnostics.push({ type: \"warning\", message, path: dir });\n\t\t}\n\t}\n\n\tprivate loadThemeFromFile(filePath: string, themes: Theme[], diagnostics: ResourceDiagnostic[]): void {\n\t\ttry {\n\t\t\tthemes.push(loadThemeFromPath(filePath));\n\t\t} catch (error) {\n\t\t\tconst message = error instanceof Error ? error.message : \"failed to load theme\";\n\t\t\tdiagnostics.push({ type: \"warning\", message, path: filePath });\n\t\t}\n\t}\n\n\tprivate async loadExtensionFactories(runtime: ExtensionRuntime): Promise<{\n\t\textensions: Extension[];\n\t\terrors: Array<{ path: string; error: string }>;\n\t}> {\n\t\tconst extensions: Extension[] = [];\n\t\tconst errors: Array<{ path: string; error: string }> = [];\n\n\t\tfor (const [index, factory] of this.extensionFactories.entries()) {\n\t\t\tconst extensionPath = `<inline:${index + 1}>`;\n\t\t\ttry {\n\t\t\t\tconst extension = await loadExtensionFromFactory(factory, this.cwd, this.eventBus, runtime, extensionPath);\n\t\t\t\textensions.push(extension);\n\t\t\t} catch (error) {\n\t\t\t\tconst message = error instanceof Error ? error.message : \"failed to load extension\";\n\t\t\t\terrors.push({ path: extensionPath, error: message });\n\t\t\t}\n\t\t}\n\n\t\treturn { extensions, errors };\n\t}\n\n\tprivate dedupePrompts(prompts: PromptTemplate[]): { prompts: PromptTemplate[]; diagnostics: ResourceDiagnostic[] } {\n\t\tconst seen = new Map<string, PromptTemplate>();\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\n\t\tfor (const prompt of prompts) {\n\t\t\tconst existing = seen.get(prompt.name);\n\t\t\tif (existing) {\n\t\t\t\tdiagnostics.push({\n\t\t\t\t\ttype: \"collision\",\n\t\t\t\t\tmessage: `name \"/${prompt.name}\" collision`,\n\t\t\t\t\tpath: prompt.filePath,\n\t\t\t\t\tcollision: {\n\t\t\t\t\t\tresourceType: \"prompt\",\n\t\t\t\t\t\tname: prompt.name,\n\t\t\t\t\t\twinnerPath: existing.filePath,\n\t\t\t\t\t\tloserPath: prompt.filePath,\n\t\t\t\t\t},\n\t\t\t\t});\n\t\t\t} else {\n\t\t\t\tseen.set(prompt.name, prompt);\n\t\t\t}\n\t\t}\n\n\t\treturn { prompts: Array.from(seen.values()), diagnostics };\n\t}\n\n\tprivate dedupeThemes(themes: Theme[]): { themes: Theme[]; diagnostics: ResourceDiagnostic[] } {\n\t\tconst seen = new Map<string, Theme>();\n\t\tconst diagnostics: ResourceDiagnostic[] = [];\n\n\t\tfor (const t of themes) {\n\t\t\tconst name = t.name ?? \"unnamed\";\n\t\t\tconst existing = seen.get(name);\n\t\t\tif (existing) {\n\t\t\t\tdiagnostics.push({\n\t\t\t\t\ttype: \"collision\",\n\t\t\t\t\tmessage: `name \"${name}\" collision`,\n\t\t\t\t\tpath: t.sourcePath,\n\t\t\t\t\tcollision: {\n\t\t\t\t\t\tresourceType: \"theme\",\n\t\t\t\t\t\tname,\n\t\t\t\t\t\twinnerPath: existing.sourcePath ?? \"<builtin>\",\n\t\t\t\t\t\tloserPath: t.sourcePath ?? \"<builtin>\",\n\t\t\t\t\t},\n\t\t\t\t});\n\t\t\t} else {\n\t\t\t\tseen.set(name, t);\n\t\t\t}\n\t\t}\n\n\t\treturn { themes: Array.from(seen.values()), diagnostics };\n\t}\n\n\tprivate discoverSystemPromptFile(): string | undefined {\n\t\tconst projectPath = join(this.cwd, CONFIG_DIR_NAME, \"SYSTEM.md\");\n\t\tif (existsSync(projectPath)) {\n\t\t\treturn projectPath;\n\t\t}\n\n\t\tconst globalPath = join(this.agentDir, \"SYSTEM.md\");\n\t\tif (existsSync(globalPath)) {\n\t\t\treturn globalPath;\n\t\t}\n\n\t\treturn undefined;\n\t}\n\n\tprivate discoverAppendSystemPromptFile(): string | undefined {\n\t\tconst projectPath = join(this.cwd, CONFIG_DIR_NAME, \"APPEND_SYSTEM.md\");\n\t\tif (existsSync(projectPath)) {\n\t\t\treturn projectPath;\n\t\t}\n\n\t\tconst globalPath = join(this.agentDir, \"APPEND_SYSTEM.md\");\n\t\tif (existsSync(globalPath)) {\n\t\t\treturn globalPath;\n\t\t}\n\n\t\treturn undefined;\n\t}\n\n\tprivate addDefaultMetadataForPath(filePath: string): void {\n\t\tif (!filePath || filePath.startsWith(\"<\")) {\n\t\t\treturn;\n\t\t}\n\n\t\tconst normalizedPath = resolve(filePath);\n\t\tif (this.pathMetadata.has(normalizedPath) || this.pathMetadata.has(filePath)) {\n\t\t\treturn;\n\t\t}\n\n\t\tconst agentRoots = [\n\t\t\tjoin(this.agentDir, \"skills\"),\n\t\t\tjoin(this.agentDir, \"commands\"),\n\t\t\tjoin(this.agentDir, \"themes\"),\n\t\t\tjoin(this.agentDir, \"extensions\"),\n\t\t];\n\t\tconst projectRoots = [\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"skills\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"commands\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"themes\"),\n\t\t\tjoin(this.cwd, CONFIG_DIR_NAME, \"extensions\"),\n\t\t];\n\n\t\tfor (const root of agentRoots) {\n\t\t\tif (this.isUnderPath(normalizedPath, root)) {\n\t\t\t\tthis.pathMetadata.set(normalizedPath, { source: \"local\", scope: \"user\", origin: \"top-level\" });\n\t\t\t\treturn;\n\t\t\t}\n\t\t}\n\n\t\tfor (const root of projectRoots) {\n\t\t\tif (this.isUnderPath(normalizedPath, root)) {\n\t\t\t\tthis.pathMetadata.set(normalizedPath, { source: \"local\", scope: \"project\", origin: \"top-level\" });\n\t\t\t\treturn;\n\t\t\t}\n\t\t}\n\t}\n\n\tprivate isUnderPath(target: string, root: string): boolean {\n\t\tconst normalizedRoot = resolve(root);\n\t\tif (target === normalizedRoot) {\n\t\t\treturn true;\n\t\t}\n\t\tconst prefix = normalizedRoot.endsWith(sep) ? normalizedRoot : `${normalizedRoot}${sep}`;\n\t\treturn target.startsWith(prefix);\n\t}\n\n\tprivate detectExtensionConflicts(extensions: Extension[]): Array<{ path: string; message: string }> {\n\t\tconst conflicts: Array<{ path: string; message: string }> = [];\n\n\t\t// Track which extension registered each tool, command, and flag\n\t\tconst toolOwners = new Map<string, string>();\n\t\tconst commandOwners = new Map<string, string>();\n\t\tconst flagOwners = new Map<string, string>();\n\n\t\tfor (const ext of extensions) {\n\t\t\t// Check tools\n\t\t\tfor (const toolName of ext.tools.keys()) {\n\t\t\t\tconst existingOwner = toolOwners.get(toolName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Tool \"${toolName}\" conflicts with ${existingOwner}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\ttoolOwners.set(toolName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\n\t\t\t// Check commands\n\t\t\tfor (const commandName of ext.commands.keys()) {\n\t\t\t\tconst existingOwner = commandOwners.get(commandName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Command \"/${commandName}\" conflicts with ${existingOwner}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\tcommandOwners.set(commandName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\n\t\t\t// Check flags\n\t\t\tfor (const flagName of ext.flags.keys()) {\n\t\t\t\tconst existingOwner = flagOwners.get(flagName);\n\t\t\t\tif (existingOwner && existingOwner !== ext.path) {\n\t\t\t\t\tconflicts.push({\n\t\t\t\t\t\tpath: ext.path,\n\t\t\t\t\t\tmessage: `Flag \"--${flagName}\" conflicts with ${existingOwner}`,\n\t\t\t\t\t});\n\t\t\t\t} else {\n\t\t\t\t\tflagOwners.set(flagName, ext.path);\n\t\t\t\t}\n\t\t\t}\n\t\t}\n\n\t\treturn conflicts;\n\t}\n}\n"]}

package/dist/core/settings-manager.d.ts

@@ -38,7 +38,7 @@ export type PackageSource = string | {
     source: string;
     extensions?: string[];
     skills?: string[];
-    prompts?: string[];
+    commands?: string[];
     themes?: string[];
 };
 export interface Settings {
@@ -60,7 +60,7 @@ export interface Settings {
     packages?: PackageSource[];
     extensions?: string[];
     skills?: string[];
-    prompts?: string[];
+    commands?: string[];
     themes?: string[];
     enableSkillCommands?: boolean;
     terminal?: TerminalSettings;

package/dist/core/settings-manager.d.ts.map

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{ existsSync, mkdirSync, readFileSync, writeFileSync } from \"fs\";\nimport { dirname, join } from \"path\";\nimport { CONFIG_DIR_NAME, getAgentDir } from \"../config.js\";\n\nexport interface CompactionSettings {\n\tenabled?: boolean; // default: true\n\treserveTokens?: number; // default: 16384\n\tkeepRecentTokens?: number; // default: 20000\n}\n\nexport interface BranchSummarySettings {\n\treserveTokens?: number; // default: 16384 (tokens reserved for prompt + LLM response)\n}\n\nexport interface RetrySettings {\n\tenabled?: boolean; // default: true\n\tmaxRetries?: number; // default: 3\n\tbaseDelayMs?: number; // default: 2000 (exponential backoff: 2s, 4s, 8s)\n\tmaxDelayMs?: number; // default: 60000 (max server-requested delay before failing)\n}\n\nexport interface TerminalSettings {\n\tshowImages?: boolean; // default: true (only relevant if terminal supports images)\n\tclearOnShrink?: boolean; // default: false (clear empty rows when content shrinks)\n}\n\nexport interface ImageSettings {\n\tautoResize?: boolean; // default: true (resize images to 2000x2000 max for better model compatibility)\n\tblockImages?: boolean; // default: false - when true, prevents all images from being sent to LLM providers\n}\n\nexport interface ThinkingBudgetsSettings {\n\tminimal?: number;\n\tlow?: number;\n\tmedium?: number;\n\thigh?: number;\n}\n\nexport interface MarkdownSettings {\n\tcodeBlockIndent?: string; // default: \"  \"\n}\n\n/**\n * Package source for npm/git packages.\n * - String form: load all resources from the package\n * - Object form: filter which resources to load\n */\nexport type PackageSource =\n\t| string\n\t| {\n\t\t\tsource: string;\n\t\t\textensions?: string[];\n\t\t\tskills?: string[];\n\t\t\tprompts?: string[];\n\t\t\tthemes?: string[];\n\t  };\n\nexport interface Settings {\n\tlastChangelogVersion?: string;\n\tdefaultProvider?: string;\n\tdefaultModel?: string;\n\tdefaultThinkingLevel?: \"off\" | \"minimal\" | \"low\" | \"medium\" | \"high\" | \"xhigh\";\n\tsteeringMode?: \"all\" | \"one-at-a-time\";\n\tfollowUpMode?: \"all\" | \"one-at-a-time\";\n\ttheme?: string;\n\tcompaction?: CompactionSettings;\n\tbranchSummary?: BranchSummarySettings;\n\tretry?: RetrySettings;\n\thideThinkingBlock?: boolean;\n\tshellPath?: string; // Custom shell path (e.g., for Cygwin users on Windows)\n\tquietStartup?: boolean;\n\tshellCommandPrefix?: string; // Prefix prepended to every bash command (e.g., \"shopt -s expand_aliases\" for alias support)\n\tcollapseChangelog?: boolean; // Show condensed changelog after update (use /changelog for full)\n\tpackages?: PackageSource[]; // Array of npm/git package sources (string or object with filtering)\n\textensions?: string[]; // Array of local extension file paths or directories\n\tskills?: string[]; // Array of local skill file paths or directories\n\tprompts?: string[]; // Array of local prompt template paths or directories\n\tthemes?: string[]; // Array of local theme file paths or directories\n\tenableSkillCommands?: boolean; // default: true - register skills as /skill:name commands\n\tterminal?: TerminalSettings;\n\timages?: ImageSettings;\n\tenabledModels?: string[]; // Model patterns for cycling (same format as --models CLI flag)\n\tdoubleEscapeAction?: \"fork\" | \"tree\" | \"none\"; // Action for double-escape with empty editor (default: \"tree\")\n\tthinkingBudgets?: ThinkingBudgetsSettings; // Custom token budgets for thinking levels\n\teditorPaddingX?: number; // Horizontal padding for input editor (default: 0)\n\tautocompleteMaxVisible?: number; // Max visible items in autocomplete dropdown (default: 5)\n\tshowHardwareCursor?: boolean; // Show terminal cursor while still positioning it for IME\n\tmarkdown?: MarkdownSettings;\n}\n\n/** Deep merge settings: project/overrides take precedence, nested objects merge recursively */\nfunction deepMergeSettings(base: Settings, overrides: Settings): Settings {\n\tconst result: Settings = { ...base };\n\n\tfor 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Settings;\n\tprivate persist: boolean;\n\tprivate modifiedFields = new Set<keyof Settings>(); // Track fields modified during session\n\tprivate modifiedNestedFields = new Map<keyof Settings, Set<string>>(); // Track nested field modifications\n\tprivate globalSettingsLoadError: Error | null = null; // Track if settings file had parse errors\n\n\tprivate constructor(\n\t\tsettingsPath: string | null,\n\t\tprojectSettingsPath: string | null,\n\t\tinitialSettings: Settings,\n\t\tpersist: boolean,\n\t\tloadError: Error | null = null,\n\t) {\n\t\tthis.settingsPath = settingsPath;\n\t\tthis.projectSettingsPath = projectSettingsPath;\n\t\tthis.persist = persist;\n\t\tthis.globalSettings = initialSettings;\n\t\tthis.inMemoryProjectSettings = {};\n\t\tthis.globalSettingsLoadError = loadError;\n\t\tconst projectSettings = this.loadProjectSettings();\n\t\tthis.settings = deepMergeSettings(this.globalSettings, projectSettings);\n\t}\n\n\t/** Create a SettingsManager that loads from files */\n\tstatic create(cwd: string = process.cwd(), agentDir: string = getAgentDir()): SettingsManager {\n\t\tconst settingsPath = join(agentDir, \"settings.json\");\n\t\tconst projectSettingsPath = join(cwd, CONFIG_DIR_NAME, \"settings.json\");\n\n\t\tlet globalSettings: Settings = {};\n\t\tlet loadError: Error | null = null;\n\n\t\ttry {\n\t\t\tglobalSettings = SettingsManager.loadFromFile(settingsPath);\n\t\t} catch (error) {\n\t\t\tloadError = error as Error;\n\t\t\tconsole.error(`Warning: Invalid JSON in ${settingsPath}: ${error}`);\n\t\t\tconsole.error(`Fix the syntax error to enable settings persistence.`);\n\t\t}\n\n\t\treturn new SettingsManager(settingsPath, projectSettingsPath, globalSettings, true, loadError);\n\t}\n\n\t/** Create an in-memory SettingsManager (no file I/O) */\n\tstatic inMemory(settings: Partial<Settings> = {}): SettingsManager {\n\t\treturn new SettingsManager(null, null, settings, false);\n\t}\n\n\tprivate static loadFromFile(path: string): Settings {\n\t\tif (!existsSync(path)) {\n\t\t\treturn {};\n\t\t}\n\t\tconst content = readFileSync(path, \"utf-8\");\n\t\tconst settings = JSON.parse(content);\n\t\treturn SettingsManager.migrateSettings(settings);\n\t}\n\n\t/** Migrate old settings format to new format */\n\tprivate static migrateSettings(settings: Record<string, unknown>): Settings {\n\t\t// Migrate queueMode -> steeringMode\n\t\tif (\"queueMode\" in settings && !(\"steeringMode\" in settings)) {\n\t\t\tsettings.steeringMode = settings.queueMode;\n\t\t\tdelete settings.queueMode;\n\t\t}\n\n\t\t// Migrate old skills object format to new array format\n\t\tif (\n\t\t\t\"skills\" in settings &&\n\t\t\ttypeof settings.skills === \"object\" &&\n\t\t\tsettings.skills !== null &&\n\t\t\t!Array.isArray(settings.skills)\n\t\t) {\n\t\t\tconst skillsSettings = settings.skills as {\n\t\t\t\tenableSkillCommands?: boolean;\n\t\t\t\tcustomDirectories?: unknown;\n\t\t\t};\n\t\t\tif (skillsSettings.enableSkillCommands !== undefined && settings.enableSkillCommands === undefined) {\n\t\t\t\tsettings.enableSkillCommands = skillsSettings.enableSkillCommands;\n\t\t\t}\n\t\t\tif (Array.isArray(skillsSettings.customDirectories) && skillsSettings.customDirectories.length > 0) {\n\t\t\t\tsettings.skills = skillsSettings.customDirectories;\n\t\t\t} else {\n\t\t\t\tdelete settings.skills;\n\t\t\t}\n\t\t}\n\n\t\treturn settings as Settings;\n\t}\n\n\tprivate loadProjectSettings(): Settings {\n\t\t// In-memory mode: return stored in-memory project settings\n\t\tif (!this.persist) {\n\t\t\treturn structuredClone(this.inMemoryProjectSettings);\n\t\t}\n\n\t\tif (!this.projectSettingsPath || !existsSync(this.projectSettingsPath)) {\n\t\t\treturn {};\n\t\t}\n\n\t\ttry {\n\t\t\tconst content = readFileSync(this.projectSettingsPath, \"utf-8\");\n\t\t\tconst settings = JSON.parse(content);\n\t\t\treturn SettingsManager.migrateSettings(settings);\n\t\t} catch (error) {\n\t\t\tconsole.error(`Warning: Could not read project settings file: ${error}`);\n\t\t\treturn {};\n\t\t}\n\t}\n\n\tgetGlobalSettings(): Settings {\n\t\treturn structuredClone(this.globalSettings);\n\t}\n\n\tgetProjectSettings(): Settings {\n\t\treturn this.loadProjectSettings();\n\t}\n\n\treload(): void {\n\t\tlet nextGlobalSettings: Settings | null = null;\n\n\t\tif (this.persist && this.settingsPath) {\n\t\t\ttry {\n\t\t\t\tnextGlobalSettings = SettingsManager.loadFromFile(this.settingsPath);\n\t\t\t\tthis.globalSettingsLoadError = null;\n\t\t\t} catch (error) {\n\t\t\t\tthis.globalSettingsLoadError = error as Error;\n\t\t\t}\n\t\t}\n\n\t\tif (nextGlobalSettings) {\n\t\t\tthis.globalSettings = nextGlobalSettings;\n\t\t}\n\n\t\tthis.modifiedFields.clear();\n\t\tthis.modifiedNestedFields.clear();\n\n\t\tconst projectSettings = this.loadProjectSettings();\n\t\tthis.settings = deepMergeSettings(this.globalSettings, projectSettings);\n\t}\n\n\t/** Apply additional overrides on top of current settings */\n\tapplyOverrides(overrides: Partial<Settings>): void {\n\t\tthis.settings = deepMergeSettings(this.settings, overrides);\n\t}\n\n\t/** Mark a field as modified during this session */\n\tprivate markModified(field: keyof Settings, nestedKey?: string): void {\n\t\tthis.modifiedFields.add(field);\n\t\tif (nestedKey) {\n\t\t\tif (!this.modifiedNestedFields.has(field)) {\n\t\t\t\tthis.modifiedNestedFields.set(field, new Set());\n\t\t\t}\n\t\t\tthis.modifiedNestedFields.get(field)!.add(nestedKey);\n\t\t}\n\t}\n\n\tprivate save(): void {\n\t\tif (this.persist && this.settingsPath) {\n\t\t\t// Don't overwrite if the file had parse errors on initial load\n\t\t\tif (this.globalSettingsLoadError) {\n\t\t\t\t// Re-merge to update active settings even though we can't persist\n\t\t\t\tconst projectSettings = this.loadProjectSettings();\n\t\t\t\tthis.settings = deepMergeSettings(this.globalSettings, projectSettings);\n\t\t\t\treturn;\n\t\t\t}\n\n\t\t\ttry {\n\t\t\t\tconst dir = dirname(this.settingsPath);\n\t\t\t\tif (!existsSync(dir)) {\n\t\t\t\t\tmkdirSync(dir, { recursive: true });\n\t\t\t\t}\n\n\t\t\t\t// Re-read current file to get latest external changes\n\t\t\t\tconst currentFileSettings = SettingsManager.loadFromFile(this.settingsPath);\n\n\t\t\t\t// Start with file settings as base - preserves external edits\n\t\t\t\tconst mergedSettings: Settings = { ...currentFileSettings };\n\n\t\t\t\t// Only override with in-memory values for fields that were explicitly modified during this session\n\t\t\t\tfor (const field of this.modifiedFields) {\n\t\t\t\t\tconst value = this.globalSettings[field];\n\n\t\t\t\t\t// Handle nested objects specially - merge at nested level to preserve unmodified nested keys\n\t\t\t\t\tif (this.modifiedNestedFields.has(field) && typeof value === \"object\" && value !== null) {\n\t\t\t\t\t\tconst nestedModified = this.modifiedNestedFields.get(field)!;\n\t\t\t\t\t\tconst baseNested = (currentFileSettings[field] as Record<string, unknown>) ?? {};\n\t\t\t\t\t\tconst inMemoryNested = value as Record<string, unknown>;\n\t\t\t\t\t\tconst mergedNested = { ...baseNested };\n\t\t\t\t\t\tfor (const nestedKey of nestedModified) {\n\t\t\t\t\t\t\tmergedNested[nestedKey] = inMemoryNested[nestedKey];\n\t\t\t\t\t\t}\n\t\t\t\t\t\t(mergedSettings as Record<string, unknown>)[field] = mergedNested;\n\t\t\t\t\t} else {\n\t\t\t\t\t\t// For top-level primitives and arrays, use the modified value directly\n\t\t\t\t\t\t(mergedSettings as Record<string, unknown>)[field] = value;\n\t\t\t\t\t}\n\t\t\t\t}\n\n\t\t\t\tthis.globalSettings = mergedSettings;\n\t\t\t\twriteFileSync(this.settingsPath, JSON.stringify(this.globalSettings, null, 2), \"utf-8\");\n\t\t\t} catch (error) {\n\t\t\t\t// File may have been externally modified with invalid JSON - don't overwrite\n\t\t\t\tconsole.error(`Warning: Could not save settings file: ${error}`);\n\t\t\t}\n\t\t}\n\n\t\t// Always re-merge to update active settings (needed for both file and inMemory modes)\n\t\tconst projectSettings = this.loadProjectSettings();\n\t\tthis.settings = deepMergeSettings(this.globalSettings, projectSettings);\n\t}\n\n\tprivate saveProjectSettings(settings: Settings): void {\n\t\t// In-memory mode: store in memory\n\t\tif (!this.persist) {\n\t\t\tthis.inMemoryProjectSettings = structuredClone(settings);\n\t\t\treturn;\n\t\t}\n\n\t\tif (!this.projectSettingsPath) {\n\t\t\treturn;\n\t\t}\n\t\ttry {\n\t\t\tconst dir = dirname(this.projectSettingsPath);\n\t\t\tif (!existsSync(dir)) {\n\t\t\t\tmkdirSync(dir, { recursive: true });\n\t\t\t}\n\t\t\twriteFileSync(this.projectSettingsPath, JSON.stringify(settings, null, 2), \"utf-8\");\n\t\t} catch (error) {\n\t\t\tconsole.error(`Warning: Could not save project settings file: ${error}`);\n\t\t}\n\t}\n\n\tgetLastChangelogVersion(): string | undefined {\n\t\treturn this.settings.lastChangelogVersion;\n\t}\n\n\tsetLastChangelogVersion(version: string): void {\n\t\tthis.globalSettings.lastChangelogVersion = version;\n\t\tthis.markModified(\"lastChangelogVersion\");\n\t\tthis.save();\n\t}\n\n\tgetDefaultProvider(): string | undefined {\n\t\treturn this.settings.defaultProvider;\n\t}\n\n\tgetDefaultModel(): string | undefined {\n\t\treturn this.settings.defaultModel;\n\t}\n\n\tsetDefaultProvider(provider: string): void {\n\t\tthis.globalSettings.defaultProvider = provider;\n\t\tthis.markModified(\"defaultProvider\");\n\t\tthis.save();\n\t}\n\n\tsetDefaultModel(modelId: string): void {\n\t\tthis.globalSettings.defaultModel = modelId;\n\t\tthis.markModified(\"defaultModel\");\n\t\tthis.save();\n\t}\n\n\tsetDefaultModelAndProvider(provider: string, modelId: string): void {\n\t\tthis.globalSettings.defaultProvider = provider;\n\t\tthis.globalSettings.defaultModel = modelId;\n\t\tthis.markModified(\"defaultProvider\");\n\t\tthis.markModified(\"defaultModel\");\n\t\tthis.save();\n\t}\n\n\tgetSteeringMode(): \"all\" | \"one-at-a-time\" {\n\t\treturn this.settings.steeringMode || \"one-at-a-time\";\n\t}\n\n\tsetSteeringMode(mode: \"all\" | \"one-at-a-time\"): void {\n\t\tthis.globalSettings.steeringMode = mode;\n\t\tthis.markModified(\"steeringMode\");\n\t\tthis.save();\n\t}\n\n\tgetFollowUpMode(): \"all\" | \"one-at-a-time\" {\n\t\treturn this.settings.followUpMode || \"one-at-a-time\";\n\t}\n\n\tsetFollowUpMode(mode: \"all\" | \"one-at-a-time\"): void {\n\t\tthis.globalSettings.followUpMode = mode;\n\t\tthis.markModified(\"followUpMode\");\n\t\tthis.save();\n\t}\n\n\tgetTheme(): string | undefined {\n\t\treturn this.settings.theme;\n\t}\n\n\tsetTheme(theme: string): void {\n\t\tthis.globalSettings.theme = theme;\n\t\tthis.markModified(\"theme\");\n\t\tthis.save();\n\t}\n\n\tgetDefaultThinkingLevel(): \"off\" | \"minimal\" | \"low\" | \"medium\" | \"high\" | \"xhigh\" | undefined {\n\t\treturn this.settings.defaultThinkingLevel;\n\t}\n\n\tsetDefaultThinkingLevel(level: \"off\" | \"minimal\" | \"low\" | \"medium\" | \"high\" | \"xhigh\"): void {\n\t\tthis.globalSettings.defaultThinkingLevel = level;\n\t\tthis.markModified(\"defaultThinkingLevel\");\n\t\tthis.save();\n\t}\n\n\tgetCompactionEnabled(): boolean {\n\t\treturn this.settings.compaction?.enabled ?? true;\n\t}\n\n\tsetCompactionEnabled(enabled: boolean): void {\n\t\tif (!this.globalSettings.compaction) {\n\t\t\tthis.globalSettings.compaction = {};\n\t\t}\n\t\tthis.globalSettings.compaction.enabled = enabled;\n\t\tthis.markModified(\"compaction\", \"enabled\");\n\t\tthis.save();\n\t}\n\n\tgetCompactionReserveTokens(): number {\n\t\treturn this.settings.compaction?.reserveTokens ?? 16384;\n\t}\n\n\tgetCompactionKeepRecentTokens(): number {\n\t\treturn this.settings.compaction?.keepRecentTokens ?? 20000;\n\t}\n\n\tgetCompactionSettings(): { enabled: boolean; reserveTokens: number; keepRecentTokens: number } {\n\t\treturn {\n\t\t\tenabled: this.getCompactionEnabled(),\n\t\t\treserveTokens: this.getCompactionReserveTokens(),\n\t\t\tkeepRecentTokens: this.getCompactionKeepRecentTokens(),\n\t\t};\n\t}\n\n\tgetBranchSummarySettings(): { reserveTokens: number } {\n\t\treturn {\n\t\t\treserveTokens: this.settings.branchSummary?.reserveTokens ?? 16384,\n\t\t};\n\t}\n\n\tgetRetryEnabled(): boolean {\n\t\treturn this.settings.retry?.enabled ?? true;\n\t}\n\n\tsetRetryEnabled(enabled: boolean): void {\n\t\tif (!this.globalSettings.retry) {\n\t\t\tthis.globalSettings.retry = {};\n\t\t}\n\t\tthis.globalSettings.retry.enabled = enabled;\n\t\tthis.markModified(\"retry\", \"enabled\");\n\t\tthis.save();\n\t}\n\n\tgetRetrySettings(): { enabled: boolean; maxRetries: number; baseDelayMs: number; maxDelayMs: number } {\n\t\treturn {\n\t\t\tenabled: this.getRetryEnabled(),\n\t\t\tmaxRetries: this.settings.retry?.maxRetries ?? 3,\n\t\t\tbaseDelayMs: this.settings.retry?.baseDelayMs ?? 2000,\n\t\t\tmaxDelayMs: this.settings.retry?.maxDelayMs ?? 60000,\n\t\t};\n\t}\n\n\tgetHideThinkingBlock(): boolean {\n\t\treturn this.settings.hideThinkingBlock ?? false;\n\t}\n\n\tsetHideThinkingBlock(hide: boolean): void {\n\t\tthis.globalSettings.hideThinkingBlock = hide;\n\t\tthis.markModified(\"hideThinkingBlock\");\n\t\tthis.save();\n\t}\n\n\tgetShellPath(): string | undefined {\n\t\treturn this.settings.shellPath;\n\t}\n\n\tsetShellPath(path: string | undefined): void {\n\t\tthis.globalSettings.shellPath = path;\n\t\tthis.markModified(\"shellPath\");\n\t\tthis.save();\n\t}\n\n\tgetQuietStartup(): boolean {\n\t\treturn this.settings.quietStartup ?? false;\n\t}\n\n\tsetQuietStartup(quiet: boolean): void {\n\t\tthis.globalSettings.quietStartup = quiet;\n\t\tthis.markModified(\"quietStartup\");\n\t\tthis.save();\n\t}\n\n\tgetShellCommandPrefix(): string | undefined {\n\t\treturn this.settings.shellCommandPrefix;\n\t}\n\n\tsetShellCommandPrefix(prefix: string | undefined): void {\n\t\tthis.globalSettings.shellCommandPrefix = prefix;\n\t\tthis.markModified(\"shellCommandPrefix\");\n\t\tthis.save();\n\t}\n\n\tgetCollapseChangelog(): boolean {\n\t\treturn this.settings.collapseChangelog ?? false;\n\t}\n\n\tsetCollapseChangelog(collapse: boolean): void {\n\t\tthis.globalSettings.collapseChangelog = collapse;\n\t\tthis.markModified(\"collapseChangelog\");\n\t\tthis.save();\n\t}\n\n\tgetPackages(): PackageSource[] {\n\t\treturn [...(this.settings.packages ?? [])];\n\t}\n\n\tsetPackages(packages: PackageSource[]): void {\n\t\tthis.globalSettings.packages = packages;\n\t\tthis.markModified(\"packages\");\n\t\tthis.save();\n\t}\n\n\tsetProjectPackages(packages: PackageSource[]): void {\n\t\tconst projectSettings = this.loadProjectSettings();\n\t\tprojectSettings.packages = packages;\n\t\tthis.saveProjectSettings(projectSettings);\n\t\tthis.settings = deepMergeSettings(this.globalSettings, projectSettings);\n\t}\n\n\tgetExtensionPaths(): string[] {\n\t\treturn [...(this.settings.extensions ?? [])];\n\t}\n\n\tsetExtensionPaths(paths: string[]): void {\n\t\tthis.globalSettings.extensions = paths;\n\t\tthis.markModified(\"extensions\");\n\t\tthis.save();\n\t}\n\n\tsetProjectExtensionPaths(paths: string[]): void {\n\t\tconst projectSettings = this.loadProjectSettings();\n\t\tprojectSettings.extensions = paths;\n\t\tthis.saveProjectSettings(projectSettings);\n\t\tthis.settings = deepMergeSettings(this.globalSettings, projectSettings);\n\t}\n\n\tgetSkillPaths(): string[] {\n\t\treturn [...(this.settings.skills ?? [])];\n\t}\n\n\tsetSkillPaths(paths: string[]): void {\n\t\tthis.globalSettings.skills = paths;\n\t\tthis.markModified(\"skills\");\n\t\tthis.save();\n\t}\n\n\tsetProjectSkillPaths(paths: string[]): void {\n\t\tconst projectSettings = this.loadProjectSettings();\n\t\tprojectSettings.skills = paths;\n\t\tthis.saveProjectSettings(projectSettings);\n\t\tthis.settings = deepMergeSettings(this.globalSettings, projectSettings);\n\t}\n\n\tgetPromptTemplatePaths(): string[] {\n\t\treturn [...(this.settings.prompts ?? [])];\n\t}\n\n\tsetPromptTemplatePaths(paths: string[]): void {\n\t\tthis.globalSettings.prompts = paths;\n\t\tthis.markModified(\"prompts\");\n\t\tthis.save();\n\t}\n\n\tsetProjectPromptTemplatePaths(paths: string[]): void {\n\t\tconst projectSettings = this.loadProjectSettings();\n\t\tprojectSettings.prompts = paths;\n\t\tthis.saveProjectSettings(projectSettings);\n\t\tthis.settings = deepMergeSettings(this.globalSettings, projectSettings);\n\t}\n\n\tgetThemePaths(): string[] {\n\t\treturn [...(this.settings.themes ?? [])];\n\t}\n\n\tsetThemePaths(paths: string[]): void {\n\t\tthis.globalSettings.themes = paths;\n\t\tthis.markModified(\"themes\");\n\t\tthis.save();\n\t}\n\n\tsetProjectThemePaths(paths: string[]): void {\n\t\tconst projectSettings = this.loadProjectSettings();\n\t\tprojectSettings.themes = paths;\n\t\tthis.saveProjectSettings(projectSettings);\n\t\tthis.settings = deepMergeSettings(this.globalSettings, projectSettings);\n\t}\n\n\tgetEnableSkillCommands(): boolean {\n\t\treturn this.settings.enableSkillCommands ?? true;\n\t}\n\n\tsetEnableSkillCommands(enabled: boolean): void {\n\t\tthis.globalSettings.enableSkillCommands = enabled;\n\t\tthis.markModified(\"enableSkillCommands\");\n\t\tthis.save();\n\t}\n\n\tgetThinkingBudgets(): ThinkingBudgetsSettings | undefined {\n\t\treturn this.settings.thinkingBudgets;\n\t}\n\n\tgetShowImages(): boolean {\n\t\treturn this.settings.terminal?.showImages ?? true;\n\t}\n\n\tsetShowImages(show: boolean): void {\n\t\tif (!this.globalSettings.terminal) {\n\t\t\tthis.globalSettings.terminal = {};\n\t\t}\n\t\tthis.globalSettings.terminal.showImages = show;\n\t\tthis.markModified(\"terminal\", \"showImages\");\n\t\tthis.save();\n\t}\n\n\tgetClearOnShrink(): boolean {\n\t\t// Settings takes precedence, then env var, then default false\n\t\tif (this.settings.terminal?.clearOnShrink !== undefined) {\n\t\t\treturn this.settings.terminal.clearOnShrink;\n\t\t}\n\t\treturn process.env.PI_CLEAR_ON_SHRINK === \"1\";\n\t}\n\n\tsetClearOnShrink(enabled: boolean): void {\n\t\tif (!this.globalSettings.terminal) {\n\t\t\tthis.globalSettings.terminal = {};\n\t\t}\n\t\tthis.globalSettings.terminal.clearOnShrink = enabled;\n\t\tthis.markModified(\"terminal\", \"clearOnShrink\");\n\t\tthis.save();\n\t}\n\n\tgetImageAutoResize(): boolean {\n\t\treturn this.settings.images?.autoResize ?? true;\n\t}\n\n\tsetImageAutoResize(enabled: boolean): void {\n\t\tif (!this.globalSettings.images) {\n\t\t\tthis.globalSettings.images = {};\n\t\t}\n\t\tthis.globalSettings.images.autoResize = enabled;\n\t\tthis.markModified(\"images\", \"autoResize\");\n\t\tthis.save();\n\t}\n\n\tgetBlockImages(): boolean {\n\t\treturn this.settings.images?.blockImages ?? false;\n\t}\n\n\tsetBlockImages(blocked: boolean): void {\n\t\tif (!this.globalSettings.images) {\n\t\t\tthis.globalSettings.images = {};\n\t\t}\n\t\tthis.globalSettings.images.blockImages = blocked;\n\t\tthis.markModified(\"images\", \"blockImages\");\n\t\tthis.save();\n\t}\n\n\tgetEnabledModels(): string[] | undefined {\n\t\treturn this.settings.enabledModels;\n\t}\n\n\tsetEnabledModels(patterns: string[] | undefined): void {\n\t\tthis.globalSettings.enabledModels = patterns;\n\t\tthis.markModified(\"enabledModels\");\n\t\tthis.save();\n\t}\n\n\tgetDoubleEscapeAction(): \"fork\" | \"tree\" | \"none\" {\n\t\treturn this.settings.doubleEscapeAction ?? \"tree\";\n\t}\n\n\tsetDoubleEscapeAction(action: \"fork\" | \"tree\" | \"none\"): void {\n\t\tthis.globalSettings.doubleEscapeAction = action;\n\t\tthis.markModified(\"doubleEscapeAction\");\n\t\tthis.save();\n\t}\n\n\tgetShowHardwareCursor(): boolean {\n\t\treturn this.settings.showHardwareCursor ?? process.env.PI_HARDWARE_CURSOR === \"1\";\n\t}\n\n\tsetShowHardwareCursor(enabled: boolean): void {\n\t\tthis.globalSettings.showHardwareCursor = enabled;\n\t\tthis.markModified(\"showHardwareCursor\");\n\t\tthis.save();\n\t}\n\n\tgetEditorPaddingX(): number {\n\t\treturn this.settings.editorPaddingX ?? 0;\n\t}\n\n\tsetEditorPaddingX(padding: number): void {\n\t\tthis.globalSettings.editorPaddingX = Math.max(0, Math.min(3, Math.floor(padding)));\n\t\tthis.markModified(\"editorPaddingX\");\n\t\tthis.save();\n\t}\n\n\tgetAutocompleteMaxVisible(): number {\n\t\treturn this.settings.autocompleteMaxVisible ?? 5;\n\t}\n\n\tsetAutocompleteMaxVisible(maxVisible: number): void {\n\t\tthis.globalSettings.autocompleteMaxVisible = Math.max(3, Math.min(20, Math.floor(maxVisible)));\n\t\tthis.markModified(\"autocompleteMaxVisible\");\n\t\tthis.save();\n\t}\n\n\tgetCodeBlockIndent(): string {\n\t\treturn this.settings.markdown?.codeBlockIndent ?? \"  \";\n\t}\n}\n"]}
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{ existsSync, mkdirSync, readFileSync, writeFileSync } from \"fs\";\nimport { dirname, join } from \"path\";\nimport { CONFIG_DIR_NAME, getAgentDir } from \"../config.js\";\n\nexport interface CompactionSettings {\n    enabled?: boolean; // default: true\n    reserveTokens?: number; // default: 16384\n    keepRecentTokens?: number; // default: 20000\n}\n\nexport interface BranchSummarySettings {\n    reserveTokens?: number; // default: 16384 (tokens reserved for prompt + LLM response)\n}\n\nexport interface RetrySettings {\n    enabled?: boolean; // default: true\n    maxRetries?: number; // default: 3\n    baseDelayMs?: number; // default: 2000 (exponential backoff: 2s, 4s, 8s)\n    maxDelayMs?: number; // default: 60000 (max server-requested delay before failing)\n}\n\nexport interface TerminalSettings {\n    showImages?: boolean; // default: true (only relevant if terminal supports images)\n    clearOnShrink?: boolean; // default: false (clear empty rows when content shrinks)\n}\n\nexport interface ImageSettings {\n    autoResize?: boolean; // default: true (resize images to 2000x2000 max for better model compatibility)\n    blockImages?: boolean; // default: false - when true, prevents all images from being sent to LLM providers\n}\n\nexport interface ThinkingBudgetsSettings {\n    minimal?: number;\n    low?: number;\n    medium?: number;\n    high?: number;\n}\n\nexport interface MarkdownSettings {\n    codeBlockIndent?: string; // default: \"  \"\n}\n\n/**\n * Package source for npm/git packages.\n * - String form: load all resources from the package\n * - Object form: filter which resources to load\n */\nexport type PackageSource =\n    | string\n    | {\n        source: string;\n        extensions?: string[];\n        skills?: string[];\n        commands?: string[];\n        themes?: string[];\n    };\n\nexport interface Settings {\n    lastChangelogVersion?: string;\n    defaultProvider?: string;\n    defaultModel?: string;\n    defaultThinkingLevel?: \"off\" | \"minimal\" | \"low\" | \"medium\" | \"high\" | \"xhigh\";\n    steeringMode?: \"all\" | \"one-at-a-time\";\n    followUpMode?: \"all\" | \"one-at-a-time\";\n    theme?: string;\n    compaction?: CompactionSettings;\n    branchSummary?: BranchSummarySettings;\n    retry?: RetrySettings;\n    hideThinkingBlock?: boolean;\n    shellPath?: string; // Custom shell path (e.g., for Cygwin users on Windows)\n    quietStartup?: boolean;\n    shellCommandPrefix?: string; // Prefix prepended to every bash command (e.g., \"shopt -s expand_aliases\" for alias support)\n    collapseChangelog?: boolean; // Show condensed changelog after update (use /changelog for full)\n    packages?: PackageSource[]; // Array of npm/git package sources (string or object with filtering)\n    extensions?: string[]; // Array of local extension file paths or directories\n    skills?: string[]; // Array of local skill file paths or directories\n    commands?: string[]; // Array of local command template paths or directories\n    themes?: string[]; // Array of local theme file paths or directories\n    enableSkillCommands?: boolean; // default: true - register skills as /skill:name commands\n    terminal?: TerminalSettings;\n    images?: ImageSettings;\n    enabledModels?: string[]; // Model patterns for cycling (same format as --models CLI flag)\n    doubleEscapeAction?: \"fork\" | \"tree\" | \"none\"; // Action for double-escape with empty editor (default: \"tree\")\n    thinkingBudgets?: ThinkingBudgetsSettings; // Custom token budgets for thinking levels\n    editorPaddingX?: number; // Horizontal padding for input editor (default: 0)\n    autocompleteMaxVisible?: number; // Max visible items in autocomplete dropdown (default: 5)\n    showHardwareCursor?: boolean; // Show terminal cursor while still positioning it for IME\n    markdown?: MarkdownSettings;\n}\n\n/** Deep merge settings: project/overrides take precedence, nested objects merge recursively */\nfunction deepMergeSettings(base: Settings, overrides: Settings): Settings {\n    const result: Settings = { ...base };\n\n    for (const key of Object.keys(overrides) as (keyof Settings)[]) {\n        const overrideValue = overrides[key];\n        const baseValue = base[key];\n\n        if (overrideValue === undefined) {\n            continue;\n        }\n\n        // For nested objects, merge recursively\n        if (\n            typeof overrideValue === \"object\" &&\n                overrideValue !== null &&\n                !Array.isArray(overrideValue) &&\n                typeof baseValue === \"object\" &&\n                baseValue !== null &&\n                !Array.isArray(baseValue)\n        ) {\n            (result as Record<string, unknown>)[key] = { ...baseValue, ...overrideValue };\n        } else {\n            // For primitives and arrays, override value wins\n            (result as Record<string, unknown>)[key] = overrideValue;\n        }\n    }\n\n    return result;\n}\n\nexport class SettingsManager {\n    private settingsPath: string | null;\n    private projectSettingsPath: string | null;\n    private globalSettings: Settings;\n    private inMemoryProjectSettings: Settings; // For in-memory mode\n    private settings: Settings;\n    private persist: boolean;\n    private modifiedFields = new Set<keyof Settings>(); // Track fields modified during session\n    private modifiedNestedFields = new Map<keyof Settings, Set<string>>(); // Track nested field modifications\n    private globalSettingsLoadError: Error | null = null; // Track if settings file had parse errors\n\n    private constructor(\n        settingsPath: string | null,\n        projectSettingsPath: string | null,\n        initialSettings: Settings,\n        persist: boolean,\n        loadError: Error | null = null,\n    ) {\n        this.settingsPath = settingsPath;\n        this.projectSettingsPath = projectSettingsPath;\n        this.persist = persist;\n        this.globalSettings = initialSettings;\n        this.inMemoryProjectSettings = {};\n        this.globalSettingsLoadError = loadError;\n        const projectSettings = this.loadProjectSettings();\n        this.settings = deepMergeSettings(this.globalSettings, projectSettings);\n    }\n\n    /** Create a SettingsManager that loads from files */\n    static create(cwd: string = process.cwd(), agentDir: string = getAgentDir()): SettingsManager {\n        const settingsPath = join(agentDir, \"settings.json\");\n        const projectSettingsPath = join(cwd, CONFIG_DIR_NAME, \"settings.json\");\n\n        let globalSettings: Settings = {};\n        let loadError: Error | null = null;\n\n        try {\n            globalSettings = SettingsManager.loadFromFile(settingsPath);\n        } catch (error) {\n            loadError = error as Error;\n            console.error(`Warning: Invalid JSON in ${settingsPath}: ${error}`);\n            console.error(`Fix the syntax error to enable settings persistence.`);\n        }\n\n        return new SettingsManager(settingsPath, projectSettingsPath, globalSettings, true, loadError);\n    }\n\n    /** Create an in-memory SettingsManager (no file I/O) */\n    static inMemory(settings: Partial<Settings> = {}): SettingsManager {\n        return new SettingsManager(null, null, settings, false);\n    }\n\n    private static loadFromFile(path: string): Settings {\n        if (!existsSync(path)) {\n            return {};\n        }\n        const content = readFileSync(path, \"utf-8\");\n        const settings = JSON.parse(content);\n        return SettingsManager.migrateSettings(settings);\n    }\n\n    /** Migrate old settings format to new format */\n    private static migrateSettings(settings: Record<string, unknown>): Settings {\n        // Migrate queueMode -> steeringMode\n        if (\"queueMode\" in settings && !(\"steeringMode\" in settings)) {\n            settings.steeringMode = settings.queueMode;\n            delete settings.queueMode;\n        }\n\n        // Migrate old skills object format to new array format\n        if (\n            \"skills\" in settings &&\n                typeof settings.skills === \"object\" &&\n                settings.skills !== null &&\n                !Array.isArray(settings.skills)\n        ) {\n            const skillsSettings = settings.skills as {\n                enableSkillCommands?: boolean;\n                customDirectories?: unknown;\n            };\n            if (skillsSettings.enableSkillCommands !== undefined && settings.enableSkillCommands === undefined) {\n                settings.enableSkillCommands = skillsSettings.enableSkillCommands;\n            }\n            if (Array.isArray(skillsSettings.customDirectories) && skillsSettings.customDirectories.length > 0) {\n                settings.skills = skillsSettings.customDirectories;\n            } else {\n                delete settings.skills;\n            }\n        }\n\n        return settings as Settings;\n    }\n\n    private loadProjectSettings(): Settings {\n        // In-memory mode: return stored in-memory project settings\n        if (!this.persist) {\n            return structuredClone(this.inMemoryProjectSettings);\n        }\n\n        if (!this.projectSettingsPath || !existsSync(this.projectSettingsPath)) {\n            return {};\n        }\n\n        try {\n            const content = readFileSync(this.projectSettingsPath, \"utf-8\");\n            const settings = JSON.parse(content);\n            return SettingsManager.migrateSettings(settings);\n        } catch (error) {\n            console.error(`Warning: Could not read project settings file: ${error}`);\n            return {};\n        }\n    }\n\n    getGlobalSettings(): Settings {\n        return structuredClone(this.globalSettings);\n    }\n\n    getProjectSettings(): Settings {\n        return this.loadProjectSettings();\n    }\n\n    reload(): void {\n        let nextGlobalSettings: Settings | null = null;\n\n        if (this.persist && this.settingsPath) {\n            try {\n                nextGlobalSettings = SettingsManager.loadFromFile(this.settingsPath);\n                this.globalSettingsLoadError = null;\n            } catch (error) {\n                this.globalSettingsLoadError = error as Error;\n            }\n        }\n\n        if (nextGlobalSettings) {\n            this.globalSettings = nextGlobalSettings;\n        }\n\n        this.modifiedFields.clear();\n        this.modifiedNestedFields.clear();\n\n        const projectSettings = this.loadProjectSettings();\n        this.settings = deepMergeSettings(this.globalSettings, projectSettings);\n    }\n\n    /** Apply additional overrides on top of current settings */\n    applyOverrides(overrides: Partial<Settings>): void {\n        this.settings = deepMergeSettings(this.settings, overrides);\n    }\n\n    /** Mark a field as modified during this session */\n    private markModified(field: keyof Settings, nestedKey?: string): void {\n        this.modifiedFields.add(field);\n        if (nestedKey) {\n            if (!this.modifiedNestedFields.has(field)) {\n                this.modifiedNestedFields.set(field, new Set());\n            }\n            this.modifiedNestedFields.get(field)!.add(nestedKey);\n        }\n    }\n\n    private save(): void {\n        if (this.persist && this.settingsPath) {\n            // Don't overwrite if the file had parse errors on initial load\n            if (this.globalSettingsLoadError) {\n                // Re-merge to update active settings even though we can't persist\n                const projectSettings = this.loadProjectSettings();\n                this.settings = deepMergeSettings(this.globalSettings, projectSettings);\n                return;\n            }\n\n            try {\n                const dir = dirname(this.settingsPath);\n                if (!existsSync(dir)) {\n                    mkdirSync(dir, { recursive: true });\n                }\n\n                // Re-read current file to get latest external changes\n                const currentFileSettings = SettingsManager.loadFromFile(this.settingsPath);\n\n                // Start with file settings as base - preserves external edits\n                const mergedSettings: Settings = { ...currentFileSettings };\n\n                // Only override with in-memory values for fields that were explicitly modified during this session\n                for (const field of this.modifiedFields) {\n                    const value = this.globalSettings[field];\n\n                    // Handle nested objects specially - merge at nested level to preserve unmodified nested keys\n                    if (this.modifiedNestedFields.has(field) && typeof value === \"object\" && value !== null) {\n                        const nestedModified = this.modifiedNestedFields.get(field)!;\n                        const baseNested = (currentFileSettings[field] as Record<string, unknown>) ?? {};\n                        const inMemoryNested = value as Record<string, unknown>;\n                        const mergedNested = { ...baseNested };\n                        for (const nestedKey of nestedModified) {\n                            mergedNested[nestedKey] = inMemoryNested[nestedKey];\n                        }\n                        (mergedSettings as Record<string, unknown>)[field] = mergedNested;\n                    } else {\n                        // For top-level primitives and arrays, use the modified value directly\n                        (mergedSettings as Record<string, unknown>)[field] = value;\n                    }\n                }\n\n                this.globalSettings = mergedSettings;\n                writeFileSync(this.settingsPath, JSON.stringify(this.globalSettings, null, 2), \"utf-8\");\n            } catch (error) {\n                // File may have been externally modified with invalid JSON - don't overwrite\n                console.error(`Warning: Could not save settings file: ${error}`);\n            }\n        }\n\n        // Always re-merge to update active settings (needed for both file and inMemory modes)\n        const projectSettings = this.loadProjectSettings();\n        this.settings = deepMergeSettings(this.globalSettings, projectSettings);\n    }\n\n    private saveProjectSettings(settings: Settings): void {\n        // In-memory mode: store in memory\n        if (!this.persist) {\n            this.inMemoryProjectSettings = structuredClone(settings);\n            return;\n        }\n\n        if (!this.projectSettingsPath) {\n            return;\n        }\n        try {\n            const dir = dirname(this.projectSettingsPath);\n            if (!existsSync(dir)) {\n                mkdirSync(dir, { recursive: true });\n            }\n            writeFileSync(this.projectSettingsPath, JSON.stringify(settings, null, 2), \"utf-8\");\n        } catch (error) {\n            console.error(`Warning: Could not save project settings file: ${error}`);\n        }\n    }\n\n    getLastChangelogVersion(): string | undefined {\n        return this.settings.lastChangelogVersion;\n    }\n\n    setLastChangelogVersion(version: string): void {\n        this.globalSettings.lastChangelogVersion = version;\n        this.markModified(\"lastChangelogVersion\");\n        this.save();\n    }\n\n    getDefaultProvider(): string | undefined {\n        return this.settings.defaultProvider;\n    }\n\n    getDefaultModel(): string | undefined {\n        return this.settings.defaultModel;\n    }\n\n    setDefaultProvider(provider: string): void {\n        this.globalSettings.defaultProvider = provider;\n        this.markModified(\"defaultProvider\");\n        this.save();\n    }\n\n    setDefaultModel(modelId: string): void {\n        this.globalSettings.defaultModel = modelId;\n        this.markModified(\"defaultModel\");\n        this.save();\n    }\n\n    setDefaultModelAndProvider(provider: string, modelId: string): void {\n        this.globalSettings.defaultProvider = provider;\n        this.globalSettings.defaultModel = modelId;\n        this.markModified(\"defaultProvider\");\n        this.markModified(\"defaultModel\");\n        this.save();\n    }\n\n    getSteeringMode(): \"all\" | \"one-at-a-time\" {\n        return this.settings.steeringMode || \"one-at-a-time\";\n    }\n\n    setSteeringMode(mode: \"all\" | \"one-at-a-time\"): void {\n        this.globalSettings.steeringMode = mode;\n        this.markModified(\"steeringMode\");\n        this.save();\n    }\n\n    getFollowUpMode(): \"all\" | \"one-at-a-time\" {\n        return this.settings.followUpMode || \"one-at-a-time\";\n    }\n\n    setFollowUpMode(mode: \"all\" | \"one-at-a-time\"): void {\n        this.globalSettings.followUpMode = mode;\n        this.markModified(\"followUpMode\");\n        this.save();\n    }\n\n    getTheme(): string | undefined {\n        return this.settings.theme;\n    }\n\n    setTheme(theme: string): void {\n        this.globalSettings.theme = theme;\n        this.markModified(\"theme\");\n        this.save();\n    }\n\n    getDefaultThinkingLevel(): \"off\" | \"minimal\" | \"low\" | \"medium\" | \"high\" | \"xhigh\" | undefined {\n        return this.settings.defaultThinkingLevel;\n    }\n\n    setDefaultThinkingLevel(level: \"off\" | \"minimal\" | \"low\" | \"medium\" | \"high\" | \"xhigh\"): void {\n        this.globalSettings.defaultThinkingLevel = level;\n        this.markModified(\"defaultThinkingLevel\");\n        this.save();\n    }\n\n    getCompactionEnabled(): boolean {\n        return this.settings.compaction?.enabled ?? true;\n    }\n\n    setCompactionEnabled(enabled: boolean): void {\n        if (!this.globalSettings.compaction) {\n            this.globalSettings.compaction = {};\n        }\n        this.globalSettings.compaction.enabled = enabled;\n        this.markModified(\"compaction\", \"enabled\");\n        this.save();\n    }\n\n    getCompactionReserveTokens(): number {\n        return this.settings.compaction?.reserveTokens ?? 16384;\n    }\n\n    getCompactionKeepRecentTokens(): number {\n        return this.settings.compaction?.keepRecentTokens ?? 20000;\n    }\n\n    getCompactionSettings(): { enabled: boolean; reserveTokens: number; keepRecentTokens: number } {\n        return {\n            enabled: this.getCompactionEnabled(),\n            reserveTokens: this.getCompactionReserveTokens(),\n            keepRecentTokens: this.getCompactionKeepRecentTokens(),\n        };\n    }\n\n    getBranchSummarySettings(): { reserveTokens: number } {\n        return {\n            reserveTokens: this.settings.branchSummary?.reserveTokens ?? 16384,\n        };\n    }\n\n    getRetryEnabled(): boolean {\n        return this.settings.retry?.enabled ?? true;\n    }\n\n    setRetryEnabled(enabled: boolean): void {\n        if (!this.globalSettings.retry) {\n            this.globalSettings.retry = {};\n        }\n        this.globalSettings.retry.enabled = enabled;\n        this.markModified(\"retry\", \"enabled\");\n        this.save();\n    }\n\n    getRetrySettings(): { enabled: boolean; maxRetries: number; baseDelayMs: number; maxDelayMs: number } {\n        return {\n            enabled: this.getRetryEnabled(),\n            maxRetries: this.settings.retry?.maxRetries ?? 3,\n            baseDelayMs: this.settings.retry?.baseDelayMs ?? 2000,\n            maxDelayMs: this.settings.retry?.maxDelayMs ?? 60000,\n        };\n    }\n\n    getHideThinkingBlock(): boolean {\n        return this.settings.hideThinkingBlock ?? false;\n    }\n\n    setHideThinkingBlock(hide: boolean): void {\n        this.globalSettings.hideThinkingBlock = hide;\n        this.markModified(\"hideThinkingBlock\");\n        this.save();\n    }\n\n    getShellPath(): string | undefined {\n        return this.settings.shellPath;\n    }\n\n    setShellPath(path: string | undefined): void {\n        this.globalSettings.shellPath = path;\n        this.markModified(\"shellPath\");\n        this.save();\n    }\n\n    getQuietStartup(): boolean {\n        return this.settings.quietStartup ?? false;\n    }\n\n    setQuietStartup(quiet: boolean): void {\n        this.globalSettings.quietStartup = quiet;\n        this.markModified(\"quietStartup\");\n        this.save();\n    }\n\n    getShellCommandPrefix(): string | undefined {\n        return this.settings.shellCommandPrefix;\n    }\n\n    setShellCommandPrefix(prefix: string | undefined): void {\n        this.globalSettings.shellCommandPrefix = prefix;\n        this.markModified(\"shellCommandPrefix\");\n        this.save();\n    }\n\n    getCollapseChangelog(): boolean {\n        return this.settings.collapseChangelog ?? false;\n    }\n\n    setCollapseChangelog(collapse: boolean): void {\n        this.globalSettings.collapseChangelog = collapse;\n        this.markModified(\"collapseChangelog\");\n        this.save();\n    }\n\n    getPackages(): PackageSource[] {\n        return [...(this.settings.packages ?? [])];\n    }\n\n    setPackages(packages: PackageSource[]): void {\n        this.globalSettings.packages = packages;\n        this.markModified(\"packages\");\n        this.save();\n    }\n\n    setProjectPackages(packages: PackageSource[]): void {\n        const projectSettings = this.loadProjectSettings();\n        projectSettings.packages = packages;\n        this.saveProjectSettings(projectSettings);\n        this.settings = deepMergeSettings(this.globalSettings, projectSettings);\n    }\n\n    getExtensionPaths(): string[] {\n        return [...(this.settings.extensions ?? [])];\n    }\n\n    setExtensionPaths(paths: string[]): void {\n        this.globalSettings.extensions = paths;\n        this.markModified(\"extensions\");\n        this.save();\n    }\n\n    setProjectExtensionPaths(paths: string[]): void {\n        const projectSettings = this.loadProjectSettings();\n        projectSettings.extensions = paths;\n        this.saveProjectSettings(projectSettings);\n        this.settings = deepMergeSettings(this.globalSettings, projectSettings);\n    }\n\n    getSkillPaths(): string[] {\n        return [...(this.settings.skills ?? [])];\n    }\n\n    setSkillPaths(paths: string[]): void {\n        this.globalSettings.skills = paths;\n        this.markModified(\"skills\");\n        this.save();\n    }\n\n    setProjectSkillPaths(paths: string[]): void {\n        const projectSettings = this.loadProjectSettings();\n        projectSettings.skills = paths;\n        this.saveProjectSettings(projectSettings);\n        this.settings = deepMergeSettings(this.globalSettings, projectSettings);\n    }\n\n    getPromptTemplatePaths(): string[] {\n        return [...(this.settings.commands ?? [])];\n    }\n\n    setPromptTemplatePaths(paths: string[]): void {\n        this.globalSettings.commands = paths;\n        this.markModified(\"commands\");\n        this.save();\n    }\n\n    setProjectPromptTemplatePaths(paths: string[]): void {\n        const projectSettings = this.loadProjectSettings();\n        projectSettings.commands = paths;\n        this.saveProjectSettings(projectSettings);\n        this.settings = deepMergeSettings(this.globalSettings, projectSettings);\n    }\n\n    getThemePaths(): string[] {\n        return [...(this.settings.themes ?? [])];\n    }\n\n    setThemePaths(paths: string[]): void {\n        this.globalSettings.themes = paths;\n        this.markModified(\"themes\");\n        this.save();\n    }\n\n    setProjectThemePaths(paths: string[]): void {\n        const projectSettings = this.loadProjectSettings();\n        projectSettings.themes = paths;\n        this.saveProjectSettings(projectSettings);\n        this.settings = deepMergeSettings(this.globalSettings, projectSettings);\n    }\n\n    getEnableSkillCommands(): boolean {\n        return this.settings.enableSkillCommands ?? true;\n    }\n\n    setEnableSkillCommands(enabled: boolean): void {\n        this.globalSettings.enableSkillCommands = enabled;\n        this.markModified(\"enableSkillCommands\");\n        this.save();\n    }\n\n    getThinkingBudgets(): ThinkingBudgetsSettings | undefined {\n        return this.settings.thinkingBudgets;\n    }\n\n    getShowImages(): boolean {\n        return this.settings.terminal?.showImages ?? true;\n    }\n\n    setShowImages(show: boolean): void {\n        if (!this.globalSettings.terminal) {\n            this.globalSettings.terminal = {};\n        }\n        this.globalSettings.terminal.showImages = show;\n        this.markModified(\"terminal\", \"showImages\");\n        this.save();\n    }\n\n    getClearOnShrink(): boolean {\n        // Settings takes precedence, then env var, then default false\n        if (this.settings.terminal?.clearOnShrink !== undefined) {\n            return this.settings.terminal.clearOnShrink;\n        }\n        return process.env.PI_CLEAR_ON_SHRINK === \"1\";\n    }\n\n    setClearOnShrink(enabled: boolean): void {\n        if (!this.globalSettings.terminal) {\n            this.globalSettings.terminal = {};\n        }\n        this.globalSettings.terminal.clearOnShrink = enabled;\n        this.markModified(\"terminal\", \"clearOnShrink\");\n        this.save();\n    }\n\n    getImageAutoResize(): boolean {\n        return this.settings.images?.autoResize ?? true;\n    }\n\n    setImageAutoResize(enabled: boolean): void {\n        if (!this.globalSettings.images) {\n            this.globalSettings.images = {};\n        }\n        this.globalSettings.images.autoResize = enabled;\n        this.markModified(\"images\", \"autoResize\");\n        this.save();\n    }\n\n    getBlockImages(): boolean {\n        return this.settings.images?.blockImages ?? false;\n    }\n\n    setBlockImages(blocked: boolean): void {\n        if (!this.globalSettings.images) {\n            this.globalSettings.images = {};\n        }\n        this.globalSettings.images.blockImages = blocked;\n        this.markModified(\"images\", \"blockImages\");\n        this.save();\n    }\n\n    getEnabledModels(): string[] | undefined {\n        return this.settings.enabledModels;\n    }\n\n    setEnabledModels(patterns: string[] | undefined): void {\n        this.globalSettings.enabledModels = patterns;\n        this.markModified(\"enabledModels\");\n        this.save();\n    }\n\n    getDoubleEscapeAction(): \"fork\" | \"tree\" | \"none\" {\n        return this.settings.doubleEscapeAction ?? \"tree\";\n    }\n\n    setDoubleEscapeAction(action: \"fork\" | \"tree\" | \"none\"): void {\n        this.globalSettings.doubleEscapeAction = action;\n        this.markModified(\"doubleEscapeAction\");\n        this.save();\n    }\n\n    getShowHardwareCursor(): boolean {\n        return this.settings.showHardwareCursor ?? process.env.PI_HARDWARE_CURSOR === \"1\";\n    }\n\n    setShowHardwareCursor(enabled: boolean): void {\n        this.globalSettings.showHardwareCursor = enabled;\n        this.markModified(\"showHardwareCursor\");\n        this.save();\n    }\n\n    getEditorPaddingX(): number {\n        return this.settings.editorPaddingX ?? 0;\n    }\n\n    setEditorPaddingX(padding: number): void {\n        this.globalSettings.editorPaddingX = Math.max(0, Math.min(3, Math.floor(padding)));\n        this.markModified(\"editorPaddingX\");\n        this.save();\n    }\n\n    getAutocompleteMaxVisible(): number {\n        return this.settings.autocompleteMaxVisible ?? 5;\n    }\n\n    setAutocompleteMaxVisible(maxVisible: number): void {\n        this.globalSettings.autocompleteMaxVisible = Math.max(3, Math.min(20, Math.floor(maxVisible)));\n        this.markModified(\"autocompleteMaxVisible\");\n        this.save();\n    }\n\n    getCodeBlockIndent(): string {\n        return this.settings.markdown?.codeBlockIndent ?? \"  \";\n    }\n}\n"]}

package/dist/core/settings-manager.js

@@ -419,16 +419,16 @@ export class SettingsManager {
         this.settings = deepMergeSettings(this.globalSettings, projectSettings);
     }
     getPromptTemplatePaths() {
-        return [...(this.settings.prompts ?? [])];
+        return [...(this.settings.commands ?? [])];
     }
     setPromptTemplatePaths(paths) {
-        this.globalSettings.prompts = paths;
-        this.markModified("prompts");
+        this.globalSettings.commands = paths;
+        this.markModified("commands");
         this.save();
     }
     setProjectPromptTemplatePaths(paths) {
         const projectSettings = this.loadProjectSettings();
-        projectSettings.prompts = paths;
+        projectSettings.commands = paths;
         this.saveProjectSettings(projectSettings);
         this.settings = deepMergeSettings(this.globalSettings, projectSettings);
     }