@usejunior/docx-core 0.0.1 → 0.1.1

package/dist/baselines/atomizer/documentReconstructor.js.map

@@ -0,0 +1 @@
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package/dist/baselines/atomizer/hierarchicalLcs.d.ts

@@ -0,0 +1,111 @@
+/**
+ * Hierarchical LCS Comparison
+ *
+ * Implements two-level comparison like WmlComparer:
+ * 1. First pass: LCS on paragraph GROUPS (coarse alignment)
+ * 2. Second pass: LCS on atoms WITHIN matched groups (fine alignment)
+ *
+ * This prevents atoms from one paragraph matching random fragments
+ * in other paragraphs.
+ *
+ * Additionally, large paragraphs (like definition sections) are split
+ * on soft breaks (w:br) to prevent cross-definition contamination.
+ */
+import type { ComparisonUnitAtom } from '../../core-types.js';
+import { type LcsResult } from './atomLcs.js';
+/**
+ * Default paragraph-level similarity threshold used for group matching.
+ *
+ * Lower values favor treating modified paragraphs as aligned pairs (so atom-level
+ * comparison can run), while higher values favor whole-paragraph replacement.
+ */
+export declare const DEFAULT_PARAGRAPH_SIMILARITY_THRESHOLD = 0.25;
+/**
+ * A group of atoms belonging to the same paragraph.
+ * Used for paragraph-level comparison.
+ */
+export interface ComparisonUnitGroup {
+    /** Paragraph index from atom.paragraphIndex */
+    paragraphIndex: number;
+    /** Atoms in this paragraph */
+    atoms: ComparisonUnitAtom[];
+    /** Hash of concatenated text content for paragraph-level matching */
+    textHash: string;
+    /** Hash of normalized text used only for matching heuristics */
+    normalizedTextHash: string;
+    /** Concatenated text content for similarity calculation */
+    textContent: string;
+}
+/**
+ * Options for hierarchical comparison.
+ */
+export interface HierarchicalCompareOptions {
+    /** Minimum similarity (0-1) to consider groups as matching. Default: 0.25 */
+    similarityThreshold?: number;
+}
+/**
+ * Result of paragraph-level LCS comparison.
+ */
+export interface GroupLcsResult {
+    /** Matched paragraph pairs */
+    matchedGroups: Array<{
+        originalIndex: number;
+        revisedIndex: number;
+    }>;
+    /** Indices of paragraphs only in original (deleted) */
+    deletedGroupIndices: number[];
+    /** Indices of paragraphs only in revised (inserted) */
+    insertedGroupIndices: number[];
+}
+/**
+ * Group atoms by paragraph index.
+ *
+ * @param atoms - Atoms with paragraphIndex set
+ * @returns Array of paragraph groups in document order
+ */
+export declare function groupAtomsByParagraphIndex(atoms: ComparisonUnitAtom[]): ComparisonUnitGroup[];
+/**
+ * Group atoms by paragraph, then split large paragraphs on soft breaks (w:br).
+ *
+ * This handles mega-paragraphs like definition sections where many definitions
+ * are in a single paragraph separated by soft breaks. Without this split,
+ * the atom-level LCS can match fragments across definition boundaries.
+ *
+ * @param atoms - Atoms with paragraphIndex set
+ * @returns Array of groups, potentially more than the number of paragraphs
+ */
+export declare function groupAtomsByParagraphAndBreaks(atoms: ComparisonUnitAtom[]): ComparisonUnitGroup[];
+/**
+ * Compute LCS on paragraph groups with similarity fallback.
+ *
+ * Two passes:
+ * 1. LCS with exact text hash matching (fast path)
+ * 2. Similarity matching for unmatched groups (fallback)
+ *
+ * @param originalGroups - Groups from original document
+ * @param revisedGroups - Groups from revised document
+ * @param similarityThreshold - Minimum similarity to consider a match (default: 0.25)
+ */
+export declare function computeGroupLcs(originalGroups: ComparisonUnitGroup[], revisedGroups: ComparisonUnitGroup[], similarityThreshold?: number): GroupLcsResult;
+/**
+ * Perform hierarchical LCS comparison.
+ *
+ * Pipeline:
+ * 1. Group atoms by paragraph
+ * 2. LCS on paragraph groups (coarse alignment) with similarity fallback
+ * 3. For matched groups: LCS on atoms within them
+ * 4. For unmatched groups: mark all atoms as deleted/inserted
+ *
+ * @param originalAtoms - Atoms from original document
+ * @param revisedAtoms - Atoms from revised document
+ * @param options - Comparison options including similarity threshold
+ * @returns Combined atom-level LCS result
+ */
+export declare function hierarchicalCompare(originalAtoms: ComparisonUnitAtom[], revisedAtoms: ComparisonUnitAtom[], options?: HierarchicalCompareOptions): LcsResult;
+/**
+ * Mark correlation status using hierarchical comparison result.
+ *
+ * Same as regular markCorrelationStatus but uses hierarchical LCS result.
+ */
+export declare function markHierarchicalCorrelationStatus(original: ComparisonUnitAtom[], revised: ComparisonUnitAtom[], lcsResult: LcsResult): void;
+//# sourceMappingURL=hierarchicalLcs.d.ts.map

package/dist/baselines/atomizer/hierarchicalLcs.d.ts.map

@@ -0,0 +1 @@
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package/dist/baselines/atomizer/hierarchicalLcs.js

@@ -0,0 +1,469 @@
+/**
+ * Hierarchical LCS Comparison
+ *
+ * Implements two-level comparison like WmlComparer:
+ * 1. First pass: LCS on paragraph GROUPS (coarse alignment)
+ * 2. Second pass: LCS on atoms WITHIN matched groups (fine alignment)
+ *
+ * This prevents atoms from one paragraph matching random fragments
+ * in other paragraphs.
+ *
+ * Additionally, large paragraphs (like definition sections) are split
+ * on soft breaks (w:br) to prevent cross-definition contamination.
+ */
+import { CorrelationStatus } from '../../core-types.js';
+import { sha1, EMPTY_PARAGRAPH_TAG } from '../../atomizer.js';
+import { computeAtomLcs } from './atomLcs.js';
+import { debug } from './debug.js';
+/**
+ * Maximum atoms in a group before we split on w:br boundaries.
+ * This handles mega-paragraphs like definition sections.
+ */
+const MAX_ATOMS_BEFORE_SPLIT = 50;
+/**
+ * Default paragraph-level similarity threshold used for group matching.
+ *
+ * Lower values favor treating modified paragraphs as aligned pairs (so atom-level
+ * comparison can run), while higher values favor whole-paragraph replacement.
+ */
+export const DEFAULT_PARAGRAPH_SIMILARITY_THRESHOLD = 0.25;
+/**
+ * Group atoms by paragraph index.
+ *
+ * @param atoms - Atoms with paragraphIndex set
+ * @returns Array of paragraph groups in document order
+ */
+export function groupAtomsByParagraphIndex(atoms) {
+    const groups = new Map();
+    for (const atom of atoms) {
+        const idx = atom.paragraphIndex ?? -1;
+        if (!groups.has(idx)) {
+            groups.set(idx, []);
+        }
+        groups.get(idx).push(atom);
+    }
+    // Convert to array sorted by paragraph index
+    const result = [];
+    const sortedIndices = [...groups.keys()].sort((a, b) => a - b);
+    for (const idx of sortedIndices) {
+        const atoms = groups.get(idx);
+        const textContent = extractGroupTextContent(atoms);
+        // For empty paragraph groups, use the atom's sha1Hash (which has context)
+        // instead of the empty text hash. This prevents all empty paragraphs from
+        // matching each other regardless of position.
+        const isEmptyParagraphGroup = atoms.length === 1 &&
+            atoms[0].contentElement.tagName === EMPTY_PARAGRAPH_TAG;
+        const textHash = isEmptyParagraphGroup
+            ? atoms[0].sha1Hash // Use context-aware atom hash
+            : sha1(textContent);
+        const normalizedTextHash = isEmptyParagraphGroup
+            ? textHash
+            : sha1(normalizeText(textContent));
+        result.push({
+            paragraphIndex: idx,
+            atoms,
+            textHash,
+            normalizedTextHash,
+            textContent,
+        });
+    }
+    return result;
+}
+/**
+ * Create a ComparisonUnitGroup from a list of atoms.
+ */
+function createGroup(atoms, groupIndex) {
+    const textContent = extractGroupTextContent(atoms);
+    // For empty paragraph groups, use the atom's sha1Hash (which has context)
+    const isEmptyGroup = atoms.length === 1 &&
+        atoms[0].contentElement.tagName === EMPTY_PARAGRAPH_TAG;
+    const textHash = isEmptyGroup
+        ? atoms[0].sha1Hash
+        : sha1(textContent);
+    const normalizedTextHash = isEmptyGroup
+        ? textHash
+        : sha1(normalizeText(textContent));
+    return {
+        paragraphIndex: groupIndex,
+        atoms,
+        textHash,
+        normalizedTextHash,
+        textContent,
+    };
+}
+/**
+ * Group atoms by paragraph, then split large paragraphs on soft breaks (w:br).
+ *
+ * This handles mega-paragraphs like definition sections where many definitions
+ * are in a single paragraph separated by soft breaks. Without this split,
+ * the atom-level LCS can match fragments across definition boundaries.
+ *
+ * @param atoms - Atoms with paragraphIndex set
+ * @returns Array of groups, potentially more than the number of paragraphs
+ */
+export function groupAtomsByParagraphAndBreaks(atoms) {
+    // First, group by paragraph index
+    const paragraphMap = new Map();
+    for (const atom of atoms) {
+        const idx = atom.paragraphIndex ?? -1;
+        if (!paragraphMap.has(idx)) {
+            paragraphMap.set(idx, []);
+        }
+        paragraphMap.get(idx).push(atom);
+    }
+    // Convert to array sorted by paragraph index
+    const sortedIndices = [...paragraphMap.keys()].sort((a, b) => a - b);
+    // Now process each paragraph, splitting large ones on w:br
+    const result = [];
+    let groupIndex = 0;
+    for (const paraIdx of sortedIndices) {
+        const paraAtoms = paragraphMap.get(paraIdx);
+        // Small paragraph - keep as-is
+        if (paraAtoms.length <= MAX_ATOMS_BEFORE_SPLIT) {
+            result.push(createGroup(paraAtoms, groupIndex++));
+            continue;
+        }
+        // Large paragraph - split on w:br boundaries
+        let currentAtoms = [];
+        for (const atom of paraAtoms) {
+            currentAtoms.push(atom);
+            // Split AFTER w:br (keep the break with the preceding content)
+            if (atom.contentElement.tagName === 'w:br') {
+                if (currentAtoms.length > 0) {
+                    result.push(createGroup(currentAtoms, groupIndex++));
+                    currentAtoms = [];
+                }
+            }
+        }
+        // Don't forget trailing atoms after last break
+        if (currentAtoms.length > 0) {
+            result.push(createGroup(currentAtoms, groupIndex++));
+        }
+    }
+    return result;
+}
+/**
+ * Extract concatenated text content from a group of atoms.
+ * Used for paragraph-level comparison and similarity calculation.
+ */
+function extractGroupTextContent(atoms) {
+    const textParts = [];
+    for (const atom of atoms) {
+        // Treat run separators as visible token boundaries for similarity purposes.
+        if (atom.contentElement.tagName === 'w:br' ||
+            atom.contentElement.tagName === 'w:cr' ||
+            atom.contentElement.tagName === 'w:tab') {
+            textParts.push(' ');
+            continue;
+        }
+        const text = atom.contentElement.textContent;
+        if (text) {
+            textParts.push(text);
+        }
+    }
+    return textParts.join('');
+}
+/**
+ * Normalize text for similarity comparison.
+ * - Trim whitespace
+ * - Collapse multiple spaces
+ * - Lowercase for case-insensitive comparison
+ */
+function normalizeText(text) {
+    return text
+        .trim()
+        .replace(/\s+/g, ' ')
+        .toLowerCase();
+}
+/**
+ * Check if a group contains only empty paragraph atoms.
+ */
+function isEmptyParagraphGroup(group) {
+    return group.atoms.length === 1 &&
+        group.atoms[0].contentElement.tagName === EMPTY_PARAGRAPH_TAG;
+}
+/**
+ * Paragraph groups are considered coarse-equal if:
+ * 1) Their raw text hash matches exactly, or
+ * 2) Their normalized-text hash matches (heuristic assist only).
+ *
+ * Empty paragraphs intentionally require strict hash equality.
+ */
+function groupsCoarselyEqual(a, b) {
+    if (a.textHash === b.textHash) {
+        return true;
+    }
+    if (isEmptyParagraphGroup(a) || isEmptyParagraphGroup(b)) {
+        return false;
+    }
+    return a.normalizedTextHash === b.normalizedTextHash;
+}
+/**
+ * Compute similarity between two groups using Jaccard index on words.
+ *
+ * @returns Value between 0 (completely different) and 1 (identical)
+ */
+function computeGroupSimilarity(a, b) {
+    // For empty paragraph groups, only consider them similar if their
+    // context-aware hashes match. This prevents empty paragraphs from
+    // matching each other regardless of position.
+    if (isEmptyParagraphGroup(a) || isEmptyParagraphGroup(b)) {
+        // If one is empty and the other isn't, they're not similar
+        if (isEmptyParagraphGroup(a) !== isEmptyParagraphGroup(b)) {
+            return 0;
+        }
+        // Both are empty paragraph groups - compare their context-aware hashes
+        // They must match exactly (return 1) or not at all (return 0)
+        return a.textHash === b.textHash ? 1 : 0;
+    }
+    const textA = normalizeText(a.textContent);
+    const textB = normalizeText(b.textContent);
+    const wordsA = new Set(textA.split(' ').filter(w => w.length > 0));
+    const wordsB = new Set(textB.split(' ').filter(w => w.length > 0));
+    if (wordsA.size === 0 && wordsB.size === 0) {
+        return 1; // Both empty
+    }
+    if (wordsA.size === 0 || wordsB.size === 0) {
+        return 0; // One empty
+    }
+    const intersection = new Set([...wordsA].filter(x => wordsB.has(x)));
+    const union = new Set([...wordsA, ...wordsB]);
+    return intersection.size / union.size;
+}
+/**
+ * Compute LCS on paragraph groups with similarity fallback.
+ *
+ * Two passes:
+ * 1. LCS with exact text hash matching (fast path)
+ * 2. Similarity matching for unmatched groups (fallback)
+ *
+ * @param originalGroups - Groups from original document
+ * @param revisedGroups - Groups from revised document
+ * @param similarityThreshold - Minimum similarity to consider a match (default: 0.25)
+ */
+export function computeGroupLcs(originalGroups, revisedGroups, similarityThreshold = DEFAULT_PARAGRAPH_SIMILARITY_THRESHOLD) {
+    const n = originalGroups.length;
+    const m = revisedGroups.length;
+    // === Pass 1: LCS with exact hash and normalized-hash matching ===
+    const dp = Array(n + 1)
+        .fill(null)
+        .map(() => Array(m + 1).fill(0));
+    for (let i = 1; i <= n; i++) {
+        for (let j = 1; j <= m; j++) {
+            if (groupsCoarselyEqual(originalGroups[i - 1], revisedGroups[j - 1])) {
+                dp[i][j] = dp[i - 1][j - 1] + 1;
+            }
+            else {
+                dp[i][j] = Math.max(dp[i - 1][j], dp[i][j - 1]);
+            }
+        }
+    }
+    // Backtrack to find matched groups
+    const matchedGroups = [];
+    let i = n;
+    let j = m;
+    while (i > 0 && j > 0) {
+        if (groupsCoarselyEqual(originalGroups[i - 1], revisedGroups[j - 1])) {
+            matchedGroups.unshift({ originalIndex: i - 1, revisedIndex: j - 1 });
+            i--;
+            j--;
+        }
+        else if (dp[i - 1][j] > dp[i][j - 1]) {
+            i--;
+        }
+        else {
+            j--;
+        }
+    }
+    // Find initially unmatched indices
+    const matchedOriginal = new Set(matchedGroups.map((m) => m.originalIndex));
+    const matchedRevised = new Set(matchedGroups.map((m) => m.revisedIndex));
+    let unmatchedOriginal = [];
+    for (let idx = 0; idx < n; idx++) {
+        if (!matchedOriginal.has(idx)) {
+            unmatchedOriginal.push(idx);
+        }
+    }
+    let unmatchedRevised = [];
+    for (let idx = 0; idx < m; idx++) {
+        if (!matchedRevised.has(idx)) {
+            unmatchedRevised.push(idx);
+        }
+    }
+    // === Pass 2: Similarity matching for unmatched groups ===
+    // Try to find near-matches for paragraphs that were modified significantly
+    const similarityMatches = [];
+    for (const origIdx of unmatchedOriginal) {
+        const origGroup = originalGroups[origIdx];
+        let bestMatch = null;
+        for (const revIdx of unmatchedRevised) {
+            const revGroup = revisedGroups[revIdx];
+            const similarity = computeGroupSimilarity(origGroup, revGroup);
+            if (similarity >= similarityThreshold) {
+                if (!bestMatch || similarity > bestMatch.similarity) {
+                    bestMatch = { revisedIndex: revIdx, similarity };
+                }
+            }
+        }
+        if (bestMatch) {
+            similarityMatches.push({ originalIndex: origIdx, revisedIndex: bestMatch.revisedIndex });
+            // Remove from unmatched revised
+            unmatchedRevised = unmatchedRevised.filter(idx => idx !== bestMatch.revisedIndex);
+        }
+    }
+    // Combine exact matches and similarity matches
+    const allMatches = [...matchedGroups, ...similarityMatches];
+    // Update matched sets
+    for (const match of similarityMatches) {
+        matchedOriginal.add(match.originalIndex);
+        matchedRevised.add(match.revisedIndex);
+    }
+    // Final deleted and inserted indices
+    const deletedGroupIndices = [];
+    for (let idx = 0; idx < n; idx++) {
+        if (!matchedOriginal.has(idx)) {
+            deletedGroupIndices.push(idx);
+        }
+    }
+    const insertedGroupIndices = [];
+    for (let idx = 0; idx < m; idx++) {
+        if (!matchedRevised.has(idx)) {
+            insertedGroupIndices.push(idx);
+        }
+    }
+    return { matchedGroups: allMatches, deletedGroupIndices, insertedGroupIndices };
+}
+/**
+ * Perform hierarchical LCS comparison.
+ *
+ * Pipeline:
+ * 1. Group atoms by paragraph
+ * 2. LCS on paragraph groups (coarse alignment) with similarity fallback
+ * 3. For matched groups: LCS on atoms within them
+ * 4. For unmatched groups: mark all atoms as deleted/inserted
+ *
+ * @param originalAtoms - Atoms from original document
+ * @param revisedAtoms - Atoms from revised document
+ * @param options - Comparison options including similarity threshold
+ * @returns Combined atom-level LCS result
+ */
+export function hierarchicalCompare(originalAtoms, revisedAtoms, options = {}) {
+    const { similarityThreshold = DEFAULT_PARAGRAPH_SIMILARITY_THRESHOLD } = options;
+    // Step 1: Group atoms by paragraph, splitting large paragraphs on w:br
+    const originalGroups = groupAtomsByParagraphAndBreaks(originalAtoms);
+    const revisedGroups = groupAtomsByParagraphAndBreaks(revisedAtoms);
+    // Count empty paragraph groups
+    const origEmptyGroups = originalGroups.filter(g => isEmptyParagraphGroup(g));
+    const revEmptyGroups = revisedGroups.filter(g => isEmptyParagraphGroup(g));
+    debug('hierarchicalLcs', `${originalGroups.length} original groups (${origEmptyGroups.length} empty), ${revisedGroups.length} revised groups (${revEmptyGroups.length} empty)`);
+    // Step 2: LCS on paragraph groups with similarity fallback
+    const groupLcs = computeGroupLcs(originalGroups, revisedGroups, similarityThreshold);
+    // Count empty paragraphs in each category
+    const matchedEmptyCount = groupLcs.matchedGroups.filter(m => isEmptyParagraphGroup(originalGroups[m.originalIndex])).length;
+    const deletedEmptyCount = groupLcs.deletedGroupIndices.filter(i => isEmptyParagraphGroup(originalGroups[i])).length;
+    const insertedEmptyCount = groupLcs.insertedGroupIndices.filter(i => isEmptyParagraphGroup(revisedGroups[i])).length;
+    debug('hierarchicalLcs', `Group LCS: ${groupLcs.matchedGroups.length} matched (${matchedEmptyCount} empty), ${groupLcs.deletedGroupIndices.length} deleted (${deletedEmptyCount} empty), ${groupLcs.insertedGroupIndices.length} inserted (${insertedEmptyCount} empty)`);
+    // Step 3: Build combined atom-level result
+    const allMatches = [];
+    const deletedIndices = [];
+    const insertedIndices = [];
+    // Build atom index maps for quick lookup
+    const origAtomToIndex = new Map();
+    for (let i = 0; i < originalAtoms.length; i++) {
+        origAtomToIndex.set(originalAtoms[i], i);
+    }
+    const revAtomToIndex = new Map();
+    for (let i = 0; i < revisedAtoms.length; i++) {
+        revAtomToIndex.set(revisedAtoms[i], i);
+    }
+    // For matched groups: do atom-level LCS within them
+    for (const match of groupLcs.matchedGroups) {
+        const origGroup = originalGroups[match.originalIndex];
+        const revGroup = revisedGroups[match.revisedIndex];
+        // Check if this was an exact match (hash) or similarity match
+        const isExactMatch = origGroup.textHash === revGroup.textHash;
+        // For LOW similarity matches (< threshold), skip atom LCS to avoid spurious
+        // matches on common fragments. Use the same threshold as paragraph matching.
+        const similarity = isExactMatch ? 1.0 : computeGroupSimilarity(origGroup, revGroup);
+        const useAtomLcs = similarity >= similarityThreshold;
+        if (!isExactMatch && !useAtomLcs) {
+            debug('hierarchicalLcs', `Low similarity match (${similarity.toFixed(2)}): origGroup[${match.originalIndex}] "${origGroup.textContent.slice(0, 50)}..." vs revGroup[${match.revisedIndex}] "${revGroup.textContent.slice(0, 50)}..."`);
+        }
+        if (isExactMatch || useAtomLcs) {
+            // High-similarity match: do atom-level LCS for fine-grained changes
+            const withinLcs = computeAtomLcs(origGroup.atoms, revGroup.atoms);
+            // Translate local indices to global indices
+            for (const atomMatch of withinLcs.matches) {
+                const origAtom = origGroup.atoms[atomMatch.originalIndex];
+                const revAtom = revGroup.atoms[atomMatch.revisedIndex];
+                allMatches.push({
+                    originalIndex: origAtomToIndex.get(origAtom),
+                    revisedIndex: revAtomToIndex.get(revAtom),
+                });
+            }
+            for (const localIdx of withinLcs.deletedIndices) {
+                const origAtom = origGroup.atoms[localIdx];
+                deletedIndices.push(origAtomToIndex.get(origAtom));
+            }
+            for (const localIdx of withinLcs.insertedIndices) {
+                const revAtom = revGroup.atoms[localIdx];
+                insertedIndices.push(revAtomToIndex.get(revAtom));
+            }
+        }
+        else {
+            // Low similarity match: treat entire paragraph as replaced
+            // This prevents spurious atom matches on common fragments
+            for (const atom of origGroup.atoms) {
+                deletedIndices.push(origAtomToIndex.get(atom));
+            }
+            for (const atom of revGroup.atoms) {
+                insertedIndices.push(revAtomToIndex.get(atom));
+            }
+        }
+    }
+    // For deleted groups: mark all atoms as deleted
+    for (const groupIdx of groupLcs.deletedGroupIndices) {
+        const group = originalGroups[groupIdx];
+        for (const atom of group.atoms) {
+            deletedIndices.push(origAtomToIndex.get(atom));
+        }
+    }
+    // For inserted groups: mark all atoms as inserted
+    for (const groupIdx of groupLcs.insertedGroupIndices) {
+        const group = revisedGroups[groupIdx];
+        for (const atom of group.atoms) {
+            insertedIndices.push(revAtomToIndex.get(atom));
+        }
+    }
+    debug('hierarchicalLcs', `Hierarchical result: ${allMatches.length} matches, ${deletedIndices.length} deleted, ${insertedIndices.length} inserted`);
+    return {
+        matches: allMatches,
+        deletedIndices,
+        insertedIndices,
+    };
+}
+/**
+ * Mark correlation status using hierarchical comparison result.
+ *
+ * Same as regular markCorrelationStatus but uses hierarchical LCS result.
+ */
+export function markHierarchicalCorrelationStatus(original, revised, lcsResult) {
+    // Mark matched atoms as Equal and link them
+    for (const match of lcsResult.matches) {
+        const origAtom = original[match.originalIndex];
+        const revAtom = revised[match.revisedIndex];
+        origAtom.correlationStatus = CorrelationStatus.Equal;
+        revAtom.correlationStatus = CorrelationStatus.Equal;
+        // Link revised atom to original for format change detection
+        revAtom.comparisonUnitAtomBefore = origAtom;
+    }
+    // Mark deleted atoms
+    for (const idx of lcsResult.deletedIndices) {
+        original[idx].correlationStatus = CorrelationStatus.Deleted;
+    }
+    // Mark inserted atoms
+    for (const idx of lcsResult.insertedIndices) {
+        revised[idx].correlationStatus = CorrelationStatus.Inserted;
+    }
+}
+//# sourceMappingURL=hierarchicalLcs.js.map