@unlimiting/qsc 0.1.0

package/dist/store.js

@@ -0,0 +1,500 @@
+import Database from "better-sqlite3";
+import * as sqliteVec from "sqlite-vec";
+// --- Embedding text formatting ---
+/**
+ * Format a chunk with contextual metadata for embedding.
+ * The resulting string includes file path, language, chunk type, and name
+ * as a prefix before the actual code content, so that the embedding model
+ * captures contextual information alongside the raw code.
+ *
+ * Format: "file: <path> | language: <lang> | type: <type> | name: <name> | code: <content>"
+ */
+export function formatChunkForEmbedding(chunk) {
+    const parts = [];
+    if (chunk.file_path)
+        parts.push(`file: ${chunk.file_path}`);
+    if (chunk.language)
+        parts.push(`language: ${chunk.language}`);
+    if (chunk.chunk_type)
+        parts.push(`type: ${chunk.chunk_type}`);
+    if (chunk.name)
+        parts.push(`name: ${chunk.name}`);
+    parts.push(`code: ${chunk.content}`);
+    return parts.join(" | ");
+}
+// --- Schema SQL ---
+const SCHEMA_SQL = `
+CREATE TABLE IF NOT EXISTS repositories (
+  id TEXT PRIMARY KEY,
+  path TEXT NOT NULL,
+  last_commit TEXT,
+  indexed_at TEXT,
+  config TEXT
+);
+
+CREATE TABLE IF NOT EXISTS files (
+  id INTEGER PRIMARY KEY AUTOINCREMENT,
+  repo_id TEXT NOT NULL REFERENCES repositories(id),
+  path TEXT NOT NULL,
+  hash TEXT NOT NULL,
+  language TEXT,
+  active INTEGER DEFAULT 1,
+  indexed_at TEXT,
+  UNIQUE(repo_id, path)
+);
+
+CREATE INDEX IF NOT EXISTS idx_files_repo_id ON files(repo_id);
+CREATE INDEX IF NOT EXISTS idx_files_hash ON files(hash);
+CREATE INDEX IF NOT EXISTS idx_files_active ON files(active);
+
+CREATE TABLE IF NOT EXISTS chunks (
+  id INTEGER PRIMARY KEY AUTOINCREMENT,
+  file_id INTEGER NOT NULL REFERENCES files(id),
+  hash TEXT NOT NULL,
+  seq INTEGER NOT NULL,
+  start_line INTEGER,
+  end_line INTEGER,
+  chunk_type TEXT,
+  name TEXT,
+  content TEXT NOT NULL,
+  metadata TEXT,
+  UNIQUE(file_id, seq)
+);
+
+CREATE INDEX IF NOT EXISTS idx_chunks_file_id ON chunks(file_id);
+CREATE INDEX IF NOT EXISTS idx_chunks_hash ON chunks(hash);
+
+CREATE TABLE IF NOT EXISTS chunk_vectors (
+  chunk_id INTEGER PRIMARY KEY REFERENCES chunks(id),
+  model TEXT NOT NULL,
+  embedded_at TEXT
+);
+`;
+const FTS_SQL = `
+CREATE VIRTUAL TABLE IF NOT EXISTS chunks_fts USING fts5(
+  content,
+  name,
+  content=chunks,
+  content_rowid=id
+);
+`;
+const FTS_TRIGGERS_SQL = `
+CREATE TRIGGER IF NOT EXISTS chunks_ai AFTER INSERT ON chunks BEGIN
+  INSERT INTO chunks_fts(rowid, content, name) VALUES (new.id, new.content, new.name);
+END;
+
+CREATE TRIGGER IF NOT EXISTS chunks_ad AFTER DELETE ON chunks BEGIN
+  INSERT INTO chunks_fts(chunks_fts, rowid, content, name) VALUES('delete', old.id, old.content, old.name);
+END;
+
+CREATE TRIGGER IF NOT EXISTS chunks_au AFTER UPDATE ON chunks BEGIN
+  INSERT INTO chunks_fts(chunks_fts, rowid, content, name) VALUES('delete', old.id, old.content, old.name);
+  INSERT INTO chunks_fts(rowid, content, name) VALUES (new.id, new.content, new.name);
+END;
+`;
+function vectorTableSQL(dimensions) {
+    return `CREATE VIRTUAL TABLE IF NOT EXISTS vectors_vec USING vec0(
+  chunk_id INTEGER PRIMARY KEY,
+  embedding float[${dimensions}] distance_metric=cosine
+);`;
+}
+function prepareStatements(db) {
+    return {
+        upsertRepo: db.prepare(`
+      INSERT INTO repositories (id, path, last_commit, indexed_at, config)
+      VALUES (@id, @path, @last_commit, @indexed_at, @config)
+      ON CONFLICT(id) DO UPDATE SET
+        path = excluded.path,
+        last_commit = excluded.last_commit,
+        indexed_at = excluded.indexed_at,
+        config = excluded.config
+    `),
+        upsertFile: db.prepare(`
+      INSERT INTO files (repo_id, path, hash, language, active, indexed_at)
+      VALUES (@repo_id, @path, @hash, @language, @active, @indexed_at)
+      ON CONFLICT(repo_id, path) DO UPDATE SET
+        hash = excluded.hash,
+        language = excluded.language,
+        active = excluded.active,
+        indexed_at = excluded.indexed_at
+    `),
+        getFileByRepoAndPath: db.prepare(`
+      SELECT * FROM files WHERE repo_id = ? AND path = ?
+    `),
+        insertChunk: db.prepare(`
+      INSERT INTO chunks (file_id, hash, seq, start_line, end_line, chunk_type, name, content, metadata)
+      VALUES (@file_id, @hash, @seq, @start_line, @end_line, @chunk_type, @name, @content, @metadata)
+    `),
+        deleteChunksByFileId: db.prepare(`
+      DELETE FROM chunks WHERE file_id = ?
+    `),
+        getChunkHashesByFileId: db.prepare(`
+      SELECT id, hash, seq FROM chunks WHERE file_id = ? ORDER BY seq ASC
+    `),
+        deleteChunkById: db.prepare(`
+      DELETE FROM chunks WHERE id = ?
+    `),
+        deleteVectorByChunkId: db.prepare(`
+      DELETE FROM vectors_vec WHERE chunk_id = ?
+    `),
+        deleteChunkVectorByChunkId: db.prepare(`
+      DELETE FROM chunk_vectors WHERE chunk_id = ?
+    `),
+        updateChunkSeq: db.prepare(`
+      UPDATE chunks SET seq = ? WHERE id = ?
+    `),
+        getUnembeddedChunks: db.prepare(`
+      SELECT
+        c.id AS chunk_id,
+        c.content,
+        c.name,
+        c.chunk_type,
+        f.path AS file_path,
+        f.language,
+        f.repo_id
+      FROM chunks c
+      JOIN files f ON c.file_id = f.id
+      WHERE f.active = 1
+        AND c.id NOT IN (SELECT chunk_id FROM chunk_vectors)
+      LIMIT ?
+    `),
+        insertVector: db.prepare(`
+      INSERT INTO vectors_vec (chunk_id, embedding)
+      VALUES (?, ?)
+    `),
+        insertChunkVector: db.prepare(`
+      INSERT OR REPLACE INTO chunk_vectors (chunk_id, model, embedded_at)
+      VALUES (?, ?, ?)
+    `),
+        searchBM25: db.prepare(`
+      SELECT
+        c.id AS chunk_id,
+        c.file_id,
+        c.content,
+        c.name,
+        c.chunk_type,
+        c.start_line,
+        c.end_line,
+        f.path AS file_path,
+        f.repo_id,
+        fts.rank
+      FROM chunks_fts fts
+      JOIN chunks c ON c.id = fts.rowid
+      JOIN files f ON c.file_id = f.id
+      WHERE chunks_fts MATCH ?
+        AND f.active = 1
+      ORDER BY fts.rank
+      LIMIT ?
+    `),
+        searchVector: db.prepare(`
+      SELECT
+        v.chunk_id,
+        v.distance
+      FROM vectors_vec v
+      WHERE v.embedding MATCH ?
+        AND k = ?
+    `),
+        searchVectorDetail: db.prepare(`
+      SELECT
+        c.id AS chunk_id,
+        c.file_id,
+        c.content,
+        c.name,
+        c.chunk_type,
+        c.start_line,
+        c.end_line,
+        f.path AS file_path,
+        f.repo_id
+      FROM chunks c
+      JOIN files f ON c.file_id = f.id
+      WHERE c.id = ?
+        AND f.active = 1
+    `),
+        deactivateFile: db.prepare(`
+      UPDATE files SET active = 0 WHERE repo_id = ? AND path = ?
+    `),
+        deleteOrphanChunks: db.prepare(`
+      DELETE FROM chunks WHERE file_id IN (
+        SELECT id FROM files WHERE active = 0
+      )
+    `),
+        deleteOrphanVectors: db.prepare(`
+      DELETE FROM vectors_vec WHERE chunk_id NOT IN (
+        SELECT id FROM chunks
+      )
+    `),
+        deleteOrphanChunkVectors: db.prepare(`
+      DELETE FROM chunk_vectors WHERE chunk_id NOT IN (
+        SELECT id FROM chunks
+      )
+    `),
+        countRepos: db.prepare(`SELECT COUNT(*) AS count FROM repositories`),
+        countFiles: db.prepare(`SELECT COUNT(*) AS count FROM files`),
+        countActiveFiles: db.prepare(`SELECT COUNT(*) AS count FROM files WHERE active = 1`),
+        countChunks: db.prepare(`SELECT COUNT(*) AS count FROM chunks`),
+        countEmbeddedChunks: db.prepare(`SELECT COUNT(*) AS count FROM chunk_vectors`),
+        getRepository: db.prepare(`
+      SELECT * FROM repositories WHERE id = ?
+    `),
+        getActiveFiles: db.prepare(`
+      SELECT * FROM files WHERE repo_id = ? AND active = 1
+    `),
+        getFileByPath: db.prepare(`
+      SELECT * FROM files WHERE repo_id = ? AND path = ?
+    `),
+        getChunksByFileId: db.prepare(`
+      SELECT * FROM chunks WHERE file_id = ? ORDER BY seq ASC
+    `),
+    };
+}
+// --- Factory ---
+export function createStore(dbPath) {
+    const db = new Database(dbPath);
+    let stmts = null;
+    return {
+        initDb(dimensions) {
+            // Load sqlite-vec extension
+            sqliteVec.load(db);
+            // Pragmas
+            db.pragma("journal_mode = WAL");
+            db.pragma("foreign_keys = ON");
+            // Create core tables
+            db.exec(SCHEMA_SQL);
+            // Create FTS5 virtual table
+            db.exec(FTS_SQL);
+            // Create FTS5 triggers
+            db.exec(FTS_TRIGGERS_SQL);
+            // Create sqlite-vec virtual table
+            db.exec(vectorTableSQL(dimensions));
+            // Prepare statements
+            stmts = prepareStatements(db);
+        },
+        upsertRepository(repo) {
+            stmts.upsertRepo.run({
+                id: repo.id,
+                path: repo.path,
+                last_commit: repo.last_commit ?? null,
+                indexed_at: repo.indexed_at ?? new Date().toISOString(),
+                config: repo.config ?? null,
+            });
+        },
+        upsertFile(file) {
+            const existing = stmts.getFileByRepoAndPath.get(file.repo_id, file.path);
+            if (existing && existing.hash === file.hash && existing.active === 1) {
+                return { id: existing.id, changed: false };
+            }
+            const result = stmts.upsertFile.run({
+                repo_id: file.repo_id,
+                path: file.path,
+                hash: file.hash,
+                language: file.language ?? null,
+                active: file.active ?? 1,
+                indexed_at: file.indexed_at ?? new Date().toISOString(),
+            });
+            const id = existing
+                ? existing.id
+                : Number(result.lastInsertRowid);
+            return { id, changed: true };
+        },
+        insertChunks(fileId, chunks) {
+            const ids = [];
+            const txn = db.transaction(() => {
+                // Get existing chunks for this file
+                const existingChunks = stmts.getChunkHashesByFileId.all(fileId);
+                // Build a map of existing hash -> chunk info (use first occurrence per hash)
+                const existingByHash = new Map();
+                for (const ec of existingChunks) {
+                    if (!existingByHash.has(ec.hash)) {
+                        existingByHash.set(ec.hash, { id: ec.id, seq: ec.seq, used: false });
+                    }
+                }
+                // Build set of new hashes for detecting removed chunks
+                const newHashCounts = new Map();
+                for (const chunk of chunks) {
+                    newHashCounts.set(chunk.hash, (newHashCounts.get(chunk.hash) ?? 0) + 1);
+                }
+                // Track which existing chunk IDs are reused
+                const reusedIds = new Set();
+                // Process new chunks: match by hash, reuse or insert
+                // First pass: collect hash usage to handle duplicates
+                const hashUsage = new Map(); // hash -> times used so far
+                for (const chunk of chunks) {
+                    const usedCount = hashUsage.get(chunk.hash) ?? 0;
+                    hashUsage.set(chunk.hash, usedCount + 1);
+                    // Find an available existing chunk with this hash
+                    const existing = existingByHash.get(chunk.hash);
+                    if (existing && !existing.used) {
+                        // Reuse existing chunk - just update seq if needed
+                        existing.used = true;
+                        reusedIds.add(existing.id);
+                        if (existing.seq !== chunk.seq) {
+                            // Need to handle UNIQUE(file_id, seq) constraint:
+                            // Temporarily set seq to a negative value, then update
+                            stmts.updateChunkSeq.run(-(chunk.seq + 1), existing.id);
+                        }
+                        ids.push(existing.id);
+                    }
+                    else {
+                        // New chunk - will insert after cleanup
+                        ids.push(-1); // placeholder
+                    }
+                }
+                // Delete chunks that are no longer needed (not reused)
+                for (const ec of existingChunks) {
+                    if (!reusedIds.has(ec.id)) {
+                        stmts.deleteVectorByChunkId.run(BigInt(ec.id));
+                        stmts.deleteChunkVectorByChunkId.run(ec.id);
+                        stmts.deleteChunkById.run(ec.id);
+                    }
+                }
+                // Fix temporary seq values for reused chunks
+                for (let i = 0; i < chunks.length; i++) {
+                    if (ids[i] !== -1) {
+                        const existing = existingByHash.get(chunks[i].hash);
+                        if (existing && existing.id === ids[i] && existing.seq !== chunks[i].seq) {
+                            stmts.updateChunkSeq.run(chunks[i].seq, ids[i]);
+                        }
+                    }
+                }
+                // Insert new chunks (those with placeholder -1)
+                for (let i = 0; i < chunks.length; i++) {
+                    if (ids[i] === -1) {
+                        const chunk = chunks[i];
+                        const result = stmts.insertChunk.run({
+                            file_id: fileId,
+                            hash: chunk.hash,
+                            seq: chunk.seq,
+                            start_line: chunk.start_line ?? null,
+                            end_line: chunk.end_line ?? null,
+                            chunk_type: chunk.chunk_type ?? null,
+                            name: chunk.name ?? null,
+                            content: chunk.content,
+                            metadata: chunk.metadata ?? null,
+                        });
+                        ids[i] = Number(result.lastInsertRowid);
+                    }
+                }
+            });
+            txn();
+            return ids;
+        },
+        getUnembeddedChunks(limit = 100) {
+            return stmts.getUnembeddedChunks.all(limit);
+        },
+        insertEmbeddings(embeddings) {
+            const txn = db.transaction(() => {
+                const now = new Date().toISOString();
+                for (const emb of embeddings) {
+                    // sqlite-vec requires BigInt for integer primary key bindings
+                    stmts.insertVector.run(BigInt(emb.chunk_id), emb.embedding);
+                    stmts.insertChunkVector.run(emb.chunk_id, emb.model, now);
+                }
+            });
+            txn();
+        },
+        searchBM25(query, limit = 20) {
+            const ftsQuery = buildFTS5Query(query);
+            if (!ftsQuery)
+                return [];
+            return stmts.searchBM25.all(ftsQuery, limit);
+        },
+        searchVector(embedding, limit = 20) {
+            // Step 1: Get chunk_ids and distances from sqlite-vec
+            const vecResults = stmts.searchVector.all(embedding, limit);
+            if (vecResults.length === 0)
+                return [];
+            // Step 2: Fetch full chunk details for each result
+            const results = [];
+            for (const vr of vecResults) {
+                const row = stmts.searchVectorDetail.get(vr.chunk_id);
+                if (row) {
+                    results.push({ ...row, distance: vr.distance });
+                }
+            }
+            return results;
+        },
+        deactivateFiles(repoId, paths) {
+            const txn = db.transaction(() => {
+                for (const p of paths) {
+                    stmts.deactivateFile.run(repoId, p);
+                }
+            });
+            txn();
+        },
+        cleanup() {
+            let deletedChunks = 0;
+            let deletedVectors = 0;
+            const txn = db.transaction(() => {
+                // Get chunk IDs from inactive files
+                const orphanChunkIds = db
+                    .prepare(`SELECT id FROM chunks WHERE file_id IN (SELECT id FROM files WHERE active = 0)`)
+                    .all();
+                if (orphanChunkIds.length > 0) {
+                    // Delete vectors for these chunks first (sqlite-vec requires BigInt)
+                    const deleteVec = db.prepare(`DELETE FROM vectors_vec WHERE chunk_id = ?`);
+                    const deleteCV = db.prepare(`DELETE FROM chunk_vectors WHERE chunk_id = ?`);
+                    for (const { id } of orphanChunkIds) {
+                        deleteVec.run(BigInt(id));
+                        deleteCV.run(id);
+                    }
+                    deletedVectors = orphanChunkIds.length;
+                    // Now delete the orphan chunks
+                    const chunkResult = stmts.deleteOrphanChunks.run();
+                    deletedChunks = chunkResult.changes;
+                }
+            });
+            txn();
+            return { deletedChunks, deletedVectors };
+        },
+        getStats() {
+            const repos = stmts.countRepos.get().count;
+            const files = stmts.countFiles.get().count;
+            const activeFiles = stmts.countActiveFiles.get().count;
+            const chunks = stmts.countChunks.get().count;
+            const embeddedChunks = stmts.countEmbeddedChunks.get().count;
+            return {
+                repositories: repos,
+                files,
+                active_files: activeFiles,
+                chunks,
+                embedded_chunks: embeddedChunks,
+                pending_chunks: chunks - embeddedChunks,
+            };
+        },
+        getRepository(repoId) {
+            return stmts.getRepository.get(repoId);
+        },
+        getActiveFiles(repoId) {
+            return stmts.getActiveFiles.all(repoId);
+        },
+        getFileByPath(repoId, path) {
+            return stmts.getFileByPath.get(repoId, path);
+        },
+        getChunksByFileId(fileId) {
+            return stmts.getChunksByFileId.all(fileId);
+        },
+        close() {
+            db.close();
+        },
+    };
+}
+// --- Helpers ---
+/**
+ * Build an FTS5-compatible query from user input.
+ * Supports quoted phrases, handles special characters.
+ */
+function buildFTS5Query(input) {
+    const trimmed = input.trim();
+    if (!trimmed)
+        return "";
+    // If already contains FTS5 operators, pass through
+    if (/["{}\[\]]/.test(trimmed) || /\b(AND|OR|NOT|NEAR)\b/.test(trimmed)) {
+        return trimmed;
+    }
+    // Split into tokens, wrap each in quotes for safe matching
+    const tokens = trimmed.split(/\s+/).filter(Boolean);
+    if (tokens.length === 0)
+        return "";
+    return tokens.map((t) => `"${t.replace(/"/g, '""')}"`).join(" ");
+}
+//# sourceMappingURL=store.js.map

package/dist/store.js.map

@@ -0,0 +1 @@
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package/package.json

@@ -0,0 +1,48 @@
+{
+  "name": "@unlimiting/qsc",
+  "version": "0.1.0",
+  "description": "Query Source Code - AST-based code search with hybrid BM25+Vector+LLM reranking",
+  "type": "module",
+  "main": "dist/index.js",
+  "types": "dist/index.d.ts",
+  "bin": {
+    "qsc": "dist/index.js"
+  },
+  "files": [
+    "dist/",
+    "package.json",
+    "README.md",
+    "LICENSE"
+  ],
+  "scripts": {
+    "dev": "tsx src/index.ts",
+    "build": "tsc",
+    "start": "node dist/index.js",
+    "typecheck": "tsc --noEmit",
+    "prepublishOnly": "npm run build"
+  },
+  "engines": {
+    "node": ">=20"
+  },
+  "publishConfig": {
+    "access": "public"
+  },
+  "license": "MIT",
+  "dependencies": {
+    "@modelcontextprotocol/sdk": "^1.27.1",
+    "better-sqlite3": "^12.6.2",
+    "fast-glob": "^3.3.3",
+    "openai": "^6.25.0",
+    "sqlite-vec": "^0.1.7-alpha.2",
+    "tree-sitter-wasms": "^0.1.13",
+    "web-tree-sitter": "^0.22.6",
+    "yaml": "^2.8.2",
+    "zod": "^4.3.6"
+  },
+  "devDependencies": {
+    "@types/better-sqlite3": "^7.6.13",
+    "@types/node": "^25.3.2",
+    "tsx": "^4.21.0",
+    "typescript": "^5.9.3"
+  }
+}