@unbrained/pm-cli 2026.6.6 → 2026.6.7

package/dist/cli/commands/reindex.js.map

@@ -1 +1 @@
-{"version":3,"file":"reindex.js","sources":["cli/commands/reindex.ts"],"sourceRoot":"/","sourcesContent":["import fs from \"node:fs/promises\";\nimport path from \"node:path\";\nimport { toNonEmptyStringOrUndefined } from \"../../core/shared/primitives.js\";\nimport { getActiveExtensionRegistrations, runActiveOnIndexHooks, runActiveOnWriteHooks } from \"../../core/extensions/index.js\";\nimport { collectRegisteredItemFieldNames } from \"../../core/extensions/item-fields.js\";\nimport {\n  resolveRegisteredSearchProvider,\n  resolveRegisteredVectorStoreAdapter,\n} from \"../../core/extensions/runtime-registrations.js\";\nimport { pathExists, writeFileAtomic } from \"../../core/fs/fs-utils.js\";\nimport { resolveItemTypeRegistry } from \"../../core/item/type-registry.js\";\nimport { parseItemDocument } from \"../../core/item/item-format.js\";\nimport { acquireLock } from \"../../core/lock/lock.js\";\nimport { buildSearchCorpus, buildSemanticCorpusInput } from \"../../core/search/corpus.js\";\nimport { executeEmbeddingBatchesWithRetry } from \"../../core/search/embedding-batches.js\";\nimport { readVectorizationStatusLedger, writeVectorizationStatusLedger } from \"../../core/search/cache.js\";\nimport { REINDEX_LOCK_ID } from \"../../core/search/background-refresh.js\";\nimport { resolveEmbeddingProviders } from \"../../core/search/providers.js\";\nimport { resolveSettingsWithSemanticRuntimeDefaults } from \"../../core/search/semantic-defaults.js\";\nimport { executeVectorDelete, executeVectorReset, executeVectorUpsert, resolveVectorStores } from \"../../core/search/vector-stores.js\";\nimport {\n  buildVectorizationEmbeddingIdentity,\n  buildVectorizationEmbeddingMetadata,\n  hasVectorizationEmbeddingIdentityChanged,\n  hasVectorizationVectorDimensionChanged,\n  inferConsistentVectorDimension,\n} from \"../../core/search/vectorization-metadata.js\";\nimport type {\n  VectorizationEmbeddingIdentity,\n  VectorizationEmbeddingMetadata,\n} from \"../../core/search/vectorization-metadata.js\";\nimport { EXIT_CODE } from \"../../core/shared/constants.js\";\nimport type { GlobalOptions } from \"../../core/shared/command-types.js\";\nimport { PmCliError } from \"../../core/shared/errors.js\";\nimport { nowIso } from \"../../core/shared/time.js\";\nimport { listAllDocumentCandidatesCached, type CachedDocumentCandidate } from \"../../core/store/front-matter-cache.js\";\nimport { getSettingsPath, resolvePmRoot } from \"../../core/store/paths.js\";\nimport { readSettings } from \"../../core/store/settings.js\";\nimport type { ItemDocument, PmSettings } from \"../../types/index.js\";\n\nconst MANIFEST_PATH = \"index/manifest.json\";\nconst EMBEDDINGS_PATH = \"search/embeddings.jsonl\";\n\nexport interface ReindexOptions {\n  mode?: string;\n  progress?: boolean;\n}\n\nexport interface ReindexResult {\n  ok: boolean;\n  mode: \"keyword\" | \"semantic\" | \"hybrid\";\n  total_items: number;\n  semantic: {\n    enabled: boolean;\n    stale_items: number;\n    unchanged_items: number;\n    embedded_items: number;\n    vector_upserted: number;\n    batches_completed: number;\n  };\n  artifacts: {\n    manifest: string;\n    embeddings: string;\n  };\n  warnings: string[];\n  generated_at: string;\n}\n\nfunction shouldEmitReindexProgress(options: ReindexOptions): boolean {\n  return options.progress === true || process.stderr.isTTY === true;\n}\n\nfunction emitReindexProgress(enabled: boolean, message: string): void {\n  if (!enabled) {\n    return;\n  }\n  try {\n    process.stderr.write(`[pm reindex] ${message}\\n`);\n  } catch {\n    // Ignore transient stderr write failures.\n  }\n}\n\nfunction parseMode(raw: string | undefined): \"keyword\" | \"semantic\" | \"hybrid\" {\n  const normalized = (raw ?? \"keyword\").trim().toLowerCase();\n  if (normalized === \"keyword\") {\n    return \"keyword\";\n  }\n  if (normalized === \"semantic\" || normalized === \"hybrid\") {\n    return normalized;\n  }\n  throw new PmCliError(\"Reindex mode must be one of keyword|semantic|hybrid\", EXIT_CODE.USAGE);\n}\n\nasync function loadDocumentCandidates(\n  pmRoot: string,\n  itemFormat: \"toon\" | \"json_markdown\",\n  typeToFolder: Record<string, string>,\n  schema: PmSettings[\"schema\"],\n): Promise<{ candidates: CachedDocumentCandidate[]; warnings: string[] }> {\n  const warnings: string[] = [];\n  const candidates = await listAllDocumentCandidatesCached(pmRoot, itemFormat, typeToFolder, warnings, schema);\n  return {\n    candidates,\n    warnings,\n  };\n}\n\nasync function hydrateDocuments(\n  pmRoot: string,\n  candidates: CachedDocumentCandidate[],\n  schema: PmSettings[\"schema\"],\n  warnings: string[],\n  itemIds?: Set<string>,\n): Promise<ItemDocument[]> {\n  const extensionFieldNames = collectRegisteredItemFieldNames(getActiveExtensionRegistrations());\n  const hydrated: ItemDocument[] = [];\n  for (const candidate of candidates) {\n    if (itemIds && !itemIds.has(candidate.metadata.id)) {\n      continue;\n    }\n    if (typeof candidate.body === \"string\") {\n      hydrated.push({\n        metadata: candidate.metadata,\n        body: candidate.body,\n      });\n      continue;\n    }\n    try {\n      const raw = await fs.readFile(candidate.item_path, \"utf8\");\n      const parsed = parseItemDocument(raw, {\n        format: candidate.item_format,\n        schema,\n        extensionFieldNames,\n        onWarning: (warning) => warnings.push(warning),\n      });\n      hydrated.push({\n        metadata: candidate.metadata,\n        body: parsed.body,\n      });\n    } catch {\n      warnings.push(`item_list_item_read_failed:${path.relative(pmRoot, candidate.item_path)}`);\n      hydrated.push({\n        metadata: candidate.metadata,\n        body: \"\",\n      });\n    }\n  }\n  return hydrated;\n}\n\nfunction buildKeywordRecord(document: ItemDocument, mode: \"keyword\" | \"semantic\" | \"hybrid\"): Record<string, unknown> {\n  const item = document.metadata;\n  return {\n    id: item.id,\n    mode,\n    updated_at: item.updated_at,\n    corpus: buildSearchCorpus(document),\n  };\n}\n\ntype ExtensionEmbedBatch = (context: {\n  inputs: string[];\n  settings: PmSettings;\n  model: string;\n}) => Promise<number[][]> | number[][];\n\ntype ExtensionEmbedOne = (context: {\n  input: string;\n  settings: PmSettings;\n  model: string;\n}) => Promise<number[]> | number[];\n\ntype ExtensionVectorUpsert = (context: {\n  points: Array<{\n    id: string;\n    vector: number[];\n    payload: Record<string, unknown>;\n  }>;\n  settings: PmSettings;\n}) => Promise<void> | void;\n\ntype ExtensionVectorDelete = (context: {\n  ids: string[];\n  settings: PmSettings;\n}) => Promise<void> | void;\n\ninterface ExtensionVectorAdapter {\n  name: string;\n  upsert: ExtensionVectorUpsert;\n  delete?: ExtensionVectorDelete;\n}\n\ninterface ReindexEmbeddingExecutionResult {\n  vectors: number[][];\n  embeddingIdentity: VectorizationEmbeddingIdentity;\n}\n\nconst toOptionalNonEmptyString = toNonEmptyStringOrUndefined;\n\nfunction resolveExtensionSearchEmbedding(\n  settings: PmSettings,\n): { name: string; embedBatch?: ExtensionEmbedBatch; embed?: ExtensionEmbedOne } | null {\n  const registrations = getActiveExtensionRegistrations();\n  const providerName = toOptionalNonEmptyString(settings.search?.provider);\n  const registration = resolveRegisteredSearchProvider(registrations, providerName);\n  if (!registration) {\n    return null;\n  }\n  const runtimeDefinition = registration.runtime_definition ?? registration.definition;\n  const name =\n    toOptionalNonEmptyString((runtimeDefinition as { name?: unknown }).name) ??\n    toOptionalNonEmptyString((registration.definition as { name?: unknown }).name) ??\n    providerName;\n  if (!name) {\n    return null;\n  }\n  const embedBatch = (runtimeDefinition as { embedBatch?: unknown; embed_batch?: unknown }).embedBatch;\n  const embedBatchSnake = (runtimeDefinition as { embedBatch?: unknown; embed_batch?: unknown }).embed_batch;\n  const embed = (runtimeDefinition as { embed?: unknown }).embed;\n  const resolvedEmbedBatch =\n    typeof embedBatch === \"function\"\n      ? (embedBatch as ExtensionEmbedBatch)\n      : typeof embedBatchSnake === \"function\"\n        ? (embedBatchSnake as ExtensionEmbedBatch)\n        : undefined;\n  const resolvedEmbed = typeof embed === \"function\" ? (embed as ExtensionEmbedOne) : undefined;\n  if (!resolvedEmbedBatch && !resolvedEmbed) {\n    return null;\n  }\n  return {\n    name,\n    embedBatch: resolvedEmbedBatch,\n    embed: resolvedEmbed,\n  };\n}\n\nfunction resolveExtensionVectorAdapter(settings: PmSettings): ExtensionVectorAdapter | null {\n  const registrations = getActiveExtensionRegistrations();\n  const adapterName = toOptionalNonEmptyString(settings.vector_store?.adapter);\n  const registration = resolveRegisteredVectorStoreAdapter(registrations, adapterName);\n  if (!registration) {\n    return null;\n  }\n  const runtimeDefinition = registration.runtime_definition ?? registration.definition;\n  const name =\n    toOptionalNonEmptyString((runtimeDefinition as { name?: unknown }).name) ??\n    toOptionalNonEmptyString((registration.definition as { name?: unknown }).name) ??\n    adapterName;\n  const upsert = (runtimeDefinition as { upsert?: unknown }).upsert;\n  const deleteHandler = (runtimeDefinition as { delete?: unknown }).delete;\n  if (!name || typeof upsert !== \"function\") {\n    return null;\n  }\n  return {\n    name,\n    upsert: upsert as ExtensionVectorUpsert,\n    ...(typeof deleteHandler === \"function\" ? { delete: deleteHandler as ExtensionVectorDelete } : {}),\n  };\n}\n\nfunction assertVector(value: unknown, context: string): number[] {\n  if (!Array.isArray(value) || value.some((entry) => typeof entry !== \"number\" || !Number.isFinite(entry))) {\n    throw new PmCliError(`Invalid vector returned by ${context}`, EXIT_CODE.GENERIC_FAILURE);\n  }\n  return value;\n}\n\nasync function executeExtensionEmbedding(\n  extensionEmbedding: { name: string; embedBatch?: ExtensionEmbedBatch; embed?: ExtensionEmbedOne },\n  settings: PmSettings,\n  corpusInputs: string[],\n): Promise<number[][]> {\n  const model = settings.search?.embedding_model?.trim() || \"text-embedding-3-small\";\n  if (extensionEmbedding.embedBatch) {\n    const vectors = await Promise.resolve(\n      extensionEmbedding.embedBatch({\n        inputs: corpusInputs,\n        settings,\n        model,\n      }),\n    );\n    if (!Array.isArray(vectors)) {\n      throw new PmCliError(\n        `Extension search provider \"${extensionEmbedding.name}\" embedBatch must return an array of vectors`,\n        EXIT_CODE.GENERIC_FAILURE,\n      );\n    }\n    return vectors.map((vector, index) =>\n      assertVector(vector, `extension search provider \"${extensionEmbedding.name}\" embedBatch output at index ${index}`),\n    );\n  }\n  if (!extensionEmbedding.embed) {\n    throw new PmCliError(\n      `Extension search provider \"${extensionEmbedding.name}\" does not implement embed/embedBatch`,\n      EXIT_CODE.GENERIC_FAILURE,\n    );\n  }\n  const vectors: number[][] = [];\n  for (const [index, input] of corpusInputs.entries()) {\n    const vector = await Promise.resolve(\n      extensionEmbedding.embed({\n        input,\n        settings,\n        model,\n      }),\n    );\n    vectors.push(assertVector(vector, `extension search provider \"${extensionEmbedding.name}\" embed output at index ${index}`));\n  }\n  return vectors;\n}\n\nfunction resolveExtensionEmbeddingModel(settings: PmSettings): string {\n  return settings.search?.embedding_model?.trim() || \"text-embedding-3-small\";\n}\n\nfunction resolveReindexEmbeddingIdentity(\n  settings: PmSettings,\n  activeEmbeddingProvider: ReturnType<typeof resolveEmbeddingProviders>[\"active\"],\n  extensionEmbedding: { name: string } | null,\n): VectorizationEmbeddingIdentity {\n  const identity = extensionEmbedding\n    ? buildVectorizationEmbeddingIdentity(extensionEmbedding.name, resolveExtensionEmbeddingModel(settings))\n    : activeEmbeddingProvider\n      ? buildVectorizationEmbeddingIdentity(activeEmbeddingProvider.name, activeEmbeddingProvider.model)\n      : null;\n  if (!identity) {\n    throw new PmCliError(\n      `No embedding identity available for semantic reindex mode`,\n      EXIT_CODE.USAGE,\n    );\n  }\n  return identity;\n}\n\nfunction collectLedgerOrphanIds(ledgerEntries: Record<string, string>, currentIds: Set<string>): string[] {\n  return Object.keys(ledgerEntries)\n    .filter((id) => !currentIds.has(id))\n    .sort((left, right) => left.localeCompare(right));\n}\n\nasync function executeReindexEmbedding(\n  settings: PmSettings,\n  requestedMode: \"keyword\" | \"semantic\" | \"hybrid\",\n  activeEmbeddingProvider: ReturnType<typeof resolveEmbeddingProviders>[\"active\"],\n  extensionEmbedding: { name: string; embedBatch?: ExtensionEmbedBatch; embed?: ExtensionEmbedOne } | null,\n  documents: ItemDocument[],\n  semanticWarnings: string[],\n  semanticSummary: ReindexResult[\"semantic\"],\n  progressEnabled: boolean,\n): Promise<ReindexEmbeddingExecutionResult> {\n  const semanticProviderName = extensionEmbedding?.name ?? activeEmbeddingProvider?.name;\n  const corpusInputs = documents.map((document) => buildSemanticCorpusInput(document, { providerName: semanticProviderName }));\n  let vectors: number[][] = [];\n  let embeddingIdentity: VectorizationEmbeddingIdentity | null = null;\n  if (extensionEmbedding) {\n    try {\n      vectors = await executeExtensionEmbedding(extensionEmbedding, settings, corpusInputs);\n      embeddingIdentity = buildVectorizationEmbeddingIdentity(extensionEmbedding.name, resolveExtensionEmbeddingModel(settings));\n    } catch (error: unknown) {\n      if (!activeEmbeddingProvider) {\n        throw new PmCliError(\n          `Extension search provider \"${extensionEmbedding.name}\" failed to generate embeddings: ${error instanceof Error ? error.message : String(error)}`,\n          EXIT_CODE.GENERIC_FAILURE,\n        );\n      }\n      semanticWarnings.push(\n        `Extension search provider \"${extensionEmbedding.name}\" failed; falling back to built-in provider (${error instanceof Error ? error.message : String(error)})`,\n      );\n    }\n  }\n  if (vectors.length === 0) {\n    if (!activeEmbeddingProvider) {\n      throw new PmCliError(\n        `No embedding executor available for reindex mode '${requestedMode}'`,\n        EXIT_CODE.USAGE,\n      );\n    }\n    const embeddingResult = await executeEmbeddingBatchesWithRetry(activeEmbeddingProvider, settings, corpusInputs, {\n      onProgress: (event) => {\n        if (event.phase === \"complete\") {\n          semanticSummary.batches_completed = event.batch_index;\n        }\n        emitReindexProgress(\n          progressEnabled,\n          `embedding_batch_${event.phase} batch=${event.batch_index}/${event.batch_total} size=${event.batch_size} completed_inputs=${event.completed_inputs}/${event.total_inputs}`,\n        );\n      },\n    });\n    semanticWarnings.push(...embeddingResult.warnings);\n    vectors = embeddingResult.vectors;\n    embeddingIdentity = buildVectorizationEmbeddingIdentity(activeEmbeddingProvider.name, activeEmbeddingProvider.model);\n  }\n  emitReindexProgress(progressEnabled, `embedding_complete vectors=${vectors.length}`);\n  if (vectors.length !== documents.length) {\n    throw new PmCliError(\n      `Embedding output size mismatch (expected ${documents.length}, received ${vectors.length})`,\n      EXIT_CODE.GENERIC_FAILURE,\n    );\n  }\n  if (!embeddingIdentity) {\n    throw new PmCliError(\n      `No embedding identity available for reindex mode '${requestedMode}'`,\n      EXIT_CODE.USAGE,\n    );\n  }\n  return { vectors, embeddingIdentity };\n}\n\nasync function resetVectorStoreForReindex(\n  activeVectorStore: ReturnType<typeof resolveVectorStores>[\"active\"],\n  extensionVectorAdapter: ExtensionVectorAdapter | null,\n  ledgerEntries: Record<string, string>,\n  settings: PmSettings,\n  semanticWarnings: string[],\n  vectorDimension?: number,\n): Promise<void> {\n  const knownIds = Object.keys(ledgerEntries);\n  if (extensionVectorAdapter) {\n    if (knownIds.length > 0 && extensionVectorAdapter.delete) {\n      try {\n        await Promise.resolve(extensionVectorAdapter.delete({ ids: knownIds.sort((left, right) => left.localeCompare(right)), settings }));\n      } catch (error: unknown) {\n        throw new PmCliError(\n          `Extension vector adapter \"${extensionVectorAdapter.name}\" failed to delete vectors during reindex reset: ${error instanceof Error ? error.message : String(error)}`,\n          EXIT_CODE.GENERIC_FAILURE,\n        );\n      }\n    } else if (knownIds.length > 0) {\n      semanticWarnings.push(\n        `search_semantic_reindex_reset_skipped:adapter=${extensionVectorAdapter.name}:known_ids=${knownIds.length}`,\n      );\n    }\n    if (!activeVectorStore) {\n      return;\n    }\n  }\n  if (activeVectorStore) {\n    await executeVectorReset(activeVectorStore, knownIds, {}, vectorDimension);\n  }\n}\n\nasync function pruneReindexOrphanVectors(\n  activeVectorStore: ReturnType<typeof resolveVectorStores>[\"active\"],\n  extensionVectorAdapter: ExtensionVectorAdapter | null,\n  orphanIds: string[],\n  settings: PmSettings,\n  semanticWarnings: string[],\n): Promise<void> {\n  if (orphanIds.length === 0) {\n    return;\n  }\n  if (extensionVectorAdapter) {\n    if (extensionVectorAdapter.delete) {\n      try {\n        await Promise.resolve(extensionVectorAdapter.delete({ ids: orphanIds, settings }));\n      } catch (error: unknown) {\n        throw new PmCliError(\n          `Extension vector adapter \"${extensionVectorAdapter.name}\" failed to delete orphan vectors during reindex: ${error instanceof Error ? error.message : String(error)}`,\n          EXIT_CODE.GENERIC_FAILURE,\n        );\n      }\n    } else {\n      semanticWarnings.push(\n        `search_semantic_reindex_orphan_prune_skipped:adapter=${extensionVectorAdapter.name}:count=${orphanIds.length}`,\n      );\n    }\n    if (!activeVectorStore) {\n      return;\n    }\n  }\n  if (activeVectorStore) {\n    await executeVectorDelete(activeVectorStore, orphanIds);\n  }\n}\n\nexport async function runReindex(options: ReindexOptions, global: GlobalOptions): Promise<ReindexResult> {\n  const requestedMode = parseMode(options.mode);\n  const progressEnabled = shouldEmitReindexProgress(options);\n  emitReindexProgress(progressEnabled, `start mode=${requestedMode}`);\n  const pmRoot = resolvePmRoot(process.cwd(), global.path);\n  if (!(await pathExists(getSettingsPath(pmRoot)))) {\n    throw new PmCliError(`Tracker is not initialized at ${pmRoot}. Run pm init first.`, EXIT_CODE.NOT_FOUND);\n  }\n\n  const settings = resolveSettingsWithSemanticRuntimeDefaults(await readSettings(pmRoot)).settings;\n  let releaseReindexLock: (() => Promise<void>) | null = null;\n  try {\n    releaseReindexLock = await acquireLock(\n      pmRoot,\n      REINDEX_LOCK_ID,\n      settings.locks.ttl_seconds,\n      process.env.PM_AUTHOR ?? \"pm-reindex\",\n      false,\n      settings.governance.force_required_for_stale_lock,\n    );\n  } catch (error: unknown) {\n    if (error instanceof PmCliError && error.exitCode === EXIT_CODE.CONFLICT) {\n      throw new PmCliError(\n        \"Another pm reindex run is already active for this project. Wait for it to finish before starting a new keyword, semantic, or hybrid reindex.\",\n        EXIT_CODE.CONFLICT,\n        {\n          code: \"reindex_already_running\",\n          type: \"urn:pm-cli:error:reindex_already_running\",\n          why: \"Semantic reindex can be expensive and duplicate runs compete for the same local embedding model and vector store.\",\n          nextSteps: [\n            \"Check active pm reindex processes before starting another reindex.\",\n            \"Rerun with --progress when you need non-interactive visibility.\",\n          ],\n        },\n      );\n    }\n    throw error;\n  }\n\n  try {\n  const typeRegistry = resolveItemTypeRegistry(settings, getActiveExtensionRegistrations());\n  const extensionEmbedding = resolveExtensionSearchEmbedding(settings);\n  const extensionVectorAdapter = resolveExtensionVectorAdapter(settings);\n  let activeEmbeddingProvider: ReturnType<typeof resolveEmbeddingProviders>[\"active\"] = null;\n  let activeVectorStore: ReturnType<typeof resolveVectorStores>[\"active\"] = null;\n  if (requestedMode !== \"keyword\") {\n    const providerResolution = resolveEmbeddingProviders(settings);\n    if (!providerResolution.active && !extensionEmbedding) {\n      throw new PmCliError(\n        `Reindex mode '${requestedMode}' requires a configured embedding provider in settings.providers.openai/settings.providers.ollama or an extension provider selected by settings.search.provider`,\n        EXIT_CODE.USAGE,\n      );\n    }\n    const vectorResolution = resolveVectorStores(settings);\n    if (!vectorResolution.active && !extensionVectorAdapter) {\n      throw new PmCliError(\n        `Reindex mode '${requestedMode}' requires a configured vector store in settings.vector_store.qdrant/settings.vector_store.lancedb or an extension adapter selected by settings.vector_store.adapter`,\n        EXIT_CODE.USAGE,\n      );\n    }\n    activeEmbeddingProvider = providerResolution.active;\n    activeVectorStore = vectorResolution.active;\n  }\n  const mode = requestedMode;\n  emitReindexProgress(progressEnabled, \"loading item corpus\");\n  const loadedCandidates = await loadDocumentCandidates(pmRoot, settings.item_format, typeRegistry.type_to_folder, settings.schema);\n  const reindexWarnings = [...loadedCandidates.warnings];\n  const documentCandidates = loadedCandidates.candidates;\n  const metadataDocuments: ItemDocument[] = documentCandidates.map((candidate) => ({\n    metadata: candidate.metadata,\n    body: typeof candidate.body === \"string\" ? candidate.body : \"\",\n  }));\n  emitReindexProgress(progressEnabled, `loaded_items=${metadataDocuments.length}`);\n  const generatedAt = nowIso();\n\n  const manifest = {\n    version: 1,\n    mode,\n    generated_at: generatedAt,\n    total_items: metadataDocuments.length,\n    items: metadataDocuments.map((document) => ({\n      id: document.metadata.id,\n      type: document.metadata.type,\n      status: document.metadata.status,\n      priority: document.metadata.priority,\n      updated_at: document.metadata.updated_at,\n    })),\n  };\n\n  const manifestPath = path.join(pmRoot, MANIFEST_PATH);\n  const embeddingsPath = path.join(pmRoot, EMBEDDINGS_PATH);\n\n  let documentsForKeywordArtifacts =\n    mode === \"keyword\"\n      ? await hydrateDocuments(pmRoot, documentCandidates, settings.schema, reindexWarnings)\n      : metadataDocuments;\n  const semanticWarnings: string[] = [];\n  const vectorizationLedgerEntries: Record<string, string> = {};\n  let vectorizationEmbeddingMetadata: VectorizationEmbeddingMetadata | null = null;\n  const semanticSummary = {\n    enabled: mode !== \"keyword\",\n    stale_items: 0,\n    unchanged_items: 0,\n    embedded_items: 0,\n    vector_upserted: 0,\n    batches_completed: 0,\n  };\n  if (mode !== \"keyword\" && metadataDocuments.length > 0) {\n    const ledger = await readVectorizationStatusLedger(pmRoot);\n    semanticWarnings.push(...ledger.warnings);\n    const embeddingIdentity = resolveReindexEmbeddingIdentity(settings, activeEmbeddingProvider, extensionEmbedding);\n    const currentIds = new Set(metadataDocuments.map((document) => document.metadata.id));\n    const orphanIds = collectLedgerOrphanIds(ledger.entries, currentIds);\n    let resetRequired = hasVectorizationEmbeddingIdentityChanged(ledger.embedding, embeddingIdentity);\n    let staleIds = new Set(\n      (resetRequired ? metadataDocuments : metadataDocuments.filter((document) => ledger.entries[document.metadata.id] !== document.metadata.updated_at))\n        .map((document) => document.metadata.id),\n    );\n    let staleDocuments = staleIds.size > 0\n      ? await hydrateDocuments(pmRoot, documentCandidates, settings.schema, reindexWarnings, staleIds)\n      : [];\n    let freshDocuments = metadataDocuments.length - staleDocuments.length;\n    semanticSummary.stale_items = staleDocuments.length;\n    semanticSummary.unchanged_items = freshDocuments;\n    for (const document of metadataDocuments) {\n      vectorizationLedgerEntries[document.metadata.id] = document.metadata.updated_at;\n    }\n    if (staleDocuments.length === 0) {\n      emitReindexProgress(progressEnabled, `embedding_skipped unchanged_items=${freshDocuments}`);\n      semanticWarnings.push(`search_semantic_reindex_skipped_unchanged:count=${freshDocuments}`);\n    } else {\n      emitReindexProgress(progressEnabled, `embedding_start items=${staleDocuments.length} unchanged_items=${freshDocuments}`);\n      let embeddingResult = await executeReindexEmbedding(\n        settings,\n        requestedMode,\n        activeEmbeddingProvider,\n        extensionEmbedding,\n        staleDocuments,\n        semanticWarnings,\n        semanticSummary,\n        progressEnabled,\n      );\n      let vectors = embeddingResult.vectors;\n      let actualEmbeddingIdentity = embeddingResult.embeddingIdentity;\n      let vectorDimension = inferConsistentVectorDimension(vectors, \"Reindex embeddings\");\n      if (\n        !resetRequired &&\n        (hasVectorizationEmbeddingIdentityChanged(ledger.embedding, actualEmbeddingIdentity) ||\n          hasVectorizationVectorDimensionChanged(ledger.embedding, vectorDimension))\n      ) {\n        resetRequired = true;\n        staleIds = new Set(metadataDocuments.map((document) => document.metadata.id));\n        staleDocuments = await hydrateDocuments(pmRoot, documentCandidates, settings.schema, reindexWarnings, staleIds);\n        freshDocuments = 0;\n        semanticSummary.stale_items = staleDocuments.length;\n        semanticSummary.unchanged_items = 0;\n        emitReindexProgress(progressEnabled, `embedding_dimension_changed reset_items=${staleDocuments.length}`);\n        embeddingResult = await executeReindexEmbedding(\n          settings,\n          requestedMode,\n          activeEmbeddingProvider,\n          extensionEmbedding,\n          staleDocuments,\n          semanticWarnings,\n          semanticSummary,\n          progressEnabled,\n        );\n        vectors = embeddingResult.vectors;\n        actualEmbeddingIdentity = embeddingResult.embeddingIdentity;\n        vectorDimension = inferConsistentVectorDimension(vectors, \"Reindex embeddings\");\n      }\n      if (resetRequired) {\n        emitReindexProgress(progressEnabled, \"vector_reset_start\");\n        await resetVectorStoreForReindex(\n          activeVectorStore,\n          extensionVectorAdapter,\n          ledger.entries,\n          settings,\n          semanticWarnings,\n          ledger.embedding ? vectorDimension : undefined,\n        );\n        emitReindexProgress(progressEnabled, \"vector_reset_complete\");\n      } else {\n        await pruneReindexOrphanVectors(activeVectorStore, extensionVectorAdapter, orphanIds, settings, semanticWarnings);\n      }\n      vectorizationEmbeddingMetadata = buildVectorizationEmbeddingMetadata(actualEmbeddingIdentity, vectorDimension);\n      const points = staleDocuments.map((document, index) => ({\n        id: document.metadata.id,\n        vector: assertVector(vectors[index], `reindex embeddings output at index ${index}`),\n        payload: {\n          id: document.metadata.id,\n          type: document.metadata.type,\n          status: document.metadata.status,\n          priority: document.metadata.priority,\n          updated_at: document.metadata.updated_at,\n        },\n      }));\n      semanticSummary.embedded_items = vectors.length;\n      if (extensionVectorAdapter) {\n        try {\n          emitReindexProgress(progressEnabled, `vector_upsert_start adapter=${extensionVectorAdapter.name} points=${points.length}`);\n          await Promise.resolve(\n            extensionVectorAdapter.upsert({\n              points,\n              settings,\n            }),\n          );\n          semanticSummary.vector_upserted = points.length;\n          emitReindexProgress(progressEnabled, `vector_upsert_complete adapter=${extensionVectorAdapter.name}`);\n        } catch (error: unknown) {\n          if (!activeVectorStore) {\n            throw new PmCliError(\n              `Extension vector adapter \"${extensionVectorAdapter.name}\" failed to upsert vectors: ${error instanceof Error ? error.message : String(error)}`,\n              EXIT_CODE.GENERIC_FAILURE,\n            );\n          }\n          semanticWarnings.push(\n            `Extension vector adapter \"${extensionVectorAdapter.name}\" failed; falling back to built-in vector store (${error instanceof Error ? error.message : String(error)})`,\n          );\n          emitReindexProgress(progressEnabled, \"vector_upsert_fallback built_in_store\");\n          await executeVectorUpsert(activeVectorStore, points);\n          semanticSummary.vector_upserted = points.length;\n          emitReindexProgress(progressEnabled, `vector_upsert_complete adapter=${activeVectorStore.name}`);\n        }\n      } else if (activeVectorStore) {\n        emitReindexProgress(progressEnabled, `vector_upsert_start adapter=${activeVectorStore.name} points=${points.length}`);\n        await executeVectorUpsert(activeVectorStore, points);\n        semanticSummary.vector_upserted = points.length;\n        emitReindexProgress(progressEnabled, `vector_upsert_complete adapter=${activeVectorStore.name}`);\n      } else {\n        throw new PmCliError(\n          `No vector upsert executor available for reindex mode '${requestedMode}'`,\n          EXIT_CODE.USAGE,\n        );\n      }\n      if (freshDocuments > 0) {\n        semanticWarnings.push(`search_semantic_reindex_skipped_unchanged:count=${freshDocuments}`);\n      }\n      const staleDocumentsById = new Map(staleDocuments.map((document) => [document.metadata.id, document]));\n      documentsForKeywordArtifacts = metadataDocuments.map(\n        (document) => staleDocumentsById.get(document.metadata.id) ?? document,\n      );\n    }\n    if (staleDocuments.length === 0) {\n      await pruneReindexOrphanVectors(activeVectorStore, extensionVectorAdapter, orphanIds, settings, semanticWarnings);\n      vectorizationEmbeddingMetadata = ledger.embedding;\n    }\n  }\n  const embeddingsLines = documentsForKeywordArtifacts.map((document) => JSON.stringify(buildKeywordRecord(document, mode))).join(\"\\n\");\n  emitReindexProgress(progressEnabled, \"writing keyword artifacts\");\n  await writeFileAtomic(manifestPath, `${JSON.stringify(manifest, null, 2)}\\n`);\n  await writeFileAtomic(embeddingsPath, `${embeddingsLines}\\n`);\n  const vectorizationWarnings: string[] = [];\n  if (mode !== \"keyword\") {\n    try {\n      emitReindexProgress(progressEnabled, \"writing vectorization status ledger\");\n      await writeVectorizationStatusLedger(pmRoot, vectorizationLedgerEntries, vectorizationEmbeddingMetadata);\n    } catch (error: unknown) {\n      vectorizationWarnings.push(\n        `search_vectorization_status_ledger_write_failed:${error instanceof Error ? error.message : String(error)}`,\n      );\n    }\n  }\n  const hookWarnings = [\n    ...(await runActiveOnWriteHooks({\n      path: manifestPath,\n      scope: \"project\",\n      op: \"reindex:manifest\",\n    })),\n    ...(await runActiveOnWriteHooks({\n      path: embeddingsPath,\n      scope: \"project\",\n      op: \"reindex:embeddings\",\n    })),\n    ...(await runActiveOnIndexHooks({\n      mode,\n      total_items: metadataDocuments.length,\n    })),\n  ];\n  emitReindexProgress(progressEnabled, \"done\");\n\n  return {\n    ok: true,\n    mode,\n    total_items: metadataDocuments.length,\n    semantic: semanticSummary,\n    artifacts: {\n      manifest: MANIFEST_PATH,\n      embeddings: EMBEDDINGS_PATH,\n    },\n    warnings: [...reindexWarnings, ...semanticWarnings, ...vectorizationWarnings, ...hookWarnings],\n    generated_at: generatedAt,\n  };\n  } finally {\n    await releaseReindexLock?.();\n  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+{"version":3,"file":"reindex.js","sources":["cli/commands/reindex.ts"],"sourceRoot":"/","sourcesContent":["import fs from \"node:fs/promises\";\nimport path from \"node:path\";\nimport { toNonEmptyStringOrUndefined } from \"../../core/shared/primitives.js\";\nimport { getActiveExtensionRegistrations, runActiveOnIndexHooks, runActiveOnWriteHooks } from \"../../core/extensions/index.js\";\nimport { collectRegisteredItemFieldNames } from \"../../core/extensions/item-fields.js\";\nimport {\n  resolveRegisteredSearchProvider,\n  resolveRegisteredVectorStoreAdapter,\n} from \"../../core/extensions/runtime-registrations.js\";\nimport { pathExists, writeFileAtomic } from \"../../core/fs/fs-utils.js\";\nimport { resolveItemTypeRegistry } from \"../../core/item/type-registry.js\";\nimport { parseItemDocument } from \"../../core/item/item-format.js\";\nimport { acquireLock } from \"../../core/lock/lock.js\";\nimport {\n  buildSearchCorpus,\n  buildSemanticCorpusInput,\n  resolveSemanticCorpusCharacterLimit,\n} from \"../../core/search/corpus.js\";\nimport { executeEmbeddingBatchesWithRetry } from \"../../core/search/embedding-batches.js\";\nimport { readVectorizationStatusLedger, writeVectorizationStatusLedger } from \"../../core/search/cache.js\";\nimport { REINDEX_LOCK_ID } from \"../../core/search/background-refresh.js\";\nimport { resolveEmbeddingProviders } from \"../../core/search/providers.js\";\nimport { resolveSettingsWithSemanticRuntimeDefaults } from \"../../core/search/semantic-defaults.js\";\nimport { executeVectorDelete, executeVectorReset, executeVectorUpsert, resolveVectorStores } from \"../../core/search/vector-stores.js\";\nimport {\n  buildVectorizationEmbeddingIdentity,\n  buildVectorizationEmbeddingMetadata,\n  hasVectorizationEmbeddingIdentityChanged,\n  hasVectorizationVectorDimensionChanged,\n  inferConsistentVectorDimension,\n} from \"../../core/search/vectorization-metadata.js\";\nimport type {\n  VectorizationEmbeddingIdentity,\n  VectorizationEmbeddingMetadata,\n} from \"../../core/search/vectorization-metadata.js\";\nimport { EXIT_CODE } from \"../../core/shared/constants.js\";\nimport type { GlobalOptions } from \"../../core/shared/command-types.js\";\nimport { PmCliError } from \"../../core/shared/errors.js\";\nimport { nowIso } from \"../../core/shared/time.js\";\nimport { listAllDocumentCandidatesCached, type CachedDocumentCandidate } from \"../../core/store/front-matter-cache.js\";\nimport { getSettingsPath, resolvePmRoot } from \"../../core/store/paths.js\";\nimport { readSettings } from \"../../core/store/settings.js\";\nimport type { ItemDocument, PmSettings } from \"../../types/index.js\";\n\nconst MANIFEST_PATH = \"index/manifest.json\";\nconst EMBEDDINGS_PATH = \"search/embeddings.jsonl\";\n\nexport interface ReindexOptions {\n  mode?: string;\n  progress?: boolean;\n}\n\nexport interface ReindexResult {\n  ok: boolean;\n  mode: \"keyword\" | \"semantic\" | \"hybrid\";\n  total_items: number;\n  semantic: {\n    enabled: boolean;\n    stale_items: number;\n    unchanged_items: number;\n    embedded_items: number;\n    vector_upserted: number;\n    batches_completed: number;\n  };\n  artifacts: {\n    manifest: string;\n    embeddings: string;\n  };\n  warnings: string[];\n  generated_at: string;\n}\n\nfunction shouldEmitReindexProgress(options: ReindexOptions): boolean {\n  return options.progress === true || process.stderr.isTTY === true;\n}\n\nfunction emitReindexProgress(enabled: boolean, message: string): void {\n  if (!enabled) {\n    return;\n  }\n  try {\n    process.stderr.write(`[pm reindex] ${message}\\n`);\n  } catch {\n    // Ignore transient stderr write failures.\n  }\n}\n\nfunction parseMode(raw: string | undefined): \"keyword\" | \"semantic\" | \"hybrid\" {\n  const normalized = (raw ?? \"keyword\").trim().toLowerCase();\n  if (normalized === \"keyword\") {\n    return \"keyword\";\n  }\n  if (normalized === \"semantic\" || normalized === \"hybrid\") {\n    return normalized;\n  }\n  throw new PmCliError(\"Reindex mode must be one of keyword|semantic|hybrid\", EXIT_CODE.USAGE);\n}\n\nasync function loadDocumentCandidates(\n  pmRoot: string,\n  itemFormat: \"toon\" | \"json_markdown\",\n  typeToFolder: Record<string, string>,\n  schema: PmSettings[\"schema\"],\n): Promise<{ candidates: CachedDocumentCandidate[]; warnings: string[] }> {\n  const warnings: string[] = [];\n  const candidates = await listAllDocumentCandidatesCached(pmRoot, itemFormat, typeToFolder, warnings, schema);\n  return {\n    candidates,\n    warnings,\n  };\n}\n\nasync function hydrateDocuments(\n  pmRoot: string,\n  candidates: CachedDocumentCandidate[],\n  schema: PmSettings[\"schema\"],\n  warnings: string[],\n  itemIds?: Set<string>,\n): Promise<ItemDocument[]> {\n  const extensionFieldNames = collectRegisteredItemFieldNames(getActiveExtensionRegistrations());\n  const hydrated: ItemDocument[] = [];\n  for (const candidate of candidates) {\n    if (itemIds && !itemIds.has(candidate.metadata.id)) {\n      continue;\n    }\n    if (typeof candidate.body === \"string\") {\n      hydrated.push({\n        metadata: candidate.metadata,\n        body: candidate.body,\n      });\n      continue;\n    }\n    try {\n      const raw = await fs.readFile(candidate.item_path, \"utf8\");\n      const parsed = parseItemDocument(raw, {\n        format: candidate.item_format,\n        schema,\n        extensionFieldNames,\n        onWarning: (warning) => warnings.push(warning),\n      });\n      hydrated.push({\n        metadata: candidate.metadata,\n        body: parsed.body,\n      });\n    } catch {\n      warnings.push(`item_list_item_read_failed:${path.relative(pmRoot, candidate.item_path)}`);\n      hydrated.push({\n        metadata: candidate.metadata,\n        body: \"\",\n      });\n    }\n  }\n  return hydrated;\n}\n\nfunction buildKeywordRecord(document: ItemDocument, mode: \"keyword\" | \"semantic\" | \"hybrid\"): Record<string, unknown> {\n  const item = document.metadata;\n  return {\n    id: item.id,\n    mode,\n    updated_at: item.updated_at,\n    corpus: buildSearchCorpus(document),\n  };\n}\n\ntype ExtensionEmbedBatch = (context: {\n  inputs: string[];\n  settings: PmSettings;\n  model: string;\n}) => Promise<number[][]> | number[][];\n\ntype ExtensionEmbedOne = (context: {\n  input: string;\n  settings: PmSettings;\n  model: string;\n}) => Promise<number[]> | number[];\n\ntype ExtensionVectorUpsert = (context: {\n  points: Array<{\n    id: string;\n    vector: number[];\n    payload: Record<string, unknown>;\n  }>;\n  settings: PmSettings;\n}) => Promise<void> | void;\n\ntype ExtensionVectorDelete = (context: {\n  ids: string[];\n  settings: PmSettings;\n}) => Promise<void> | void;\n\ninterface ExtensionVectorAdapter {\n  name: string;\n  upsert: ExtensionVectorUpsert;\n  delete?: ExtensionVectorDelete;\n}\n\ninterface ReindexEmbeddingExecutionResult {\n  vectors: number[][];\n  embeddingIdentity: VectorizationEmbeddingIdentity;\n}\n\nconst toOptionalNonEmptyString = toNonEmptyStringOrUndefined;\n\nfunction resolveExtensionSearchEmbedding(\n  settings: PmSettings,\n): { name: string; embedBatch?: ExtensionEmbedBatch; embed?: ExtensionEmbedOne } | null {\n  const registrations = getActiveExtensionRegistrations();\n  const providerName = toOptionalNonEmptyString(settings.search?.provider);\n  const registration = resolveRegisteredSearchProvider(registrations, providerName);\n  if (!registration) {\n    return null;\n  }\n  const runtimeDefinition = registration.runtime_definition ?? registration.definition;\n  const name =\n    toOptionalNonEmptyString((runtimeDefinition as { name?: unknown }).name) ??\n    toOptionalNonEmptyString((registration.definition as { name?: unknown }).name) ??\n    providerName;\n  if (!name) {\n    return null;\n  }\n  const embedBatch = (runtimeDefinition as { embedBatch?: unknown; embed_batch?: unknown }).embedBatch;\n  const embedBatchSnake = (runtimeDefinition as { embedBatch?: unknown; embed_batch?: unknown }).embed_batch;\n  const embed = (runtimeDefinition as { embed?: unknown }).embed;\n  const resolvedEmbedBatch =\n    typeof embedBatch === \"function\"\n      ? (embedBatch as ExtensionEmbedBatch)\n      : typeof embedBatchSnake === \"function\"\n        ? (embedBatchSnake as ExtensionEmbedBatch)\n        : undefined;\n  const resolvedEmbed = typeof embed === \"function\" ? (embed as ExtensionEmbedOne) : undefined;\n  if (!resolvedEmbedBatch && !resolvedEmbed) {\n    return null;\n  }\n  return {\n    name,\n    embedBatch: resolvedEmbedBatch,\n    embed: resolvedEmbed,\n  };\n}\n\nfunction resolveExtensionVectorAdapter(settings: PmSettings): ExtensionVectorAdapter | null {\n  const registrations = getActiveExtensionRegistrations();\n  const adapterName = toOptionalNonEmptyString(settings.vector_store?.adapter);\n  const registration = resolveRegisteredVectorStoreAdapter(registrations, adapterName);\n  if (!registration) {\n    return null;\n  }\n  const runtimeDefinition = registration.runtime_definition ?? registration.definition;\n  const name =\n    toOptionalNonEmptyString((runtimeDefinition as { name?: unknown }).name) ??\n    toOptionalNonEmptyString((registration.definition as { name?: unknown }).name) ??\n    adapterName;\n  const upsert = (runtimeDefinition as { upsert?: unknown }).upsert;\n  const deleteHandler = (runtimeDefinition as { delete?: unknown }).delete;\n  if (!name || typeof upsert !== \"function\") {\n    return null;\n  }\n  return {\n    name,\n    upsert: upsert as ExtensionVectorUpsert,\n    ...(typeof deleteHandler === \"function\" ? { delete: deleteHandler as ExtensionVectorDelete } : {}),\n  };\n}\n\nfunction assertVector(value: unknown, context: string): number[] {\n  if (!Array.isArray(value) || value.some((entry) => typeof entry !== \"number\" || !Number.isFinite(entry))) {\n    throw new PmCliError(`Invalid vector returned by ${context}`, EXIT_CODE.GENERIC_FAILURE);\n  }\n  return value;\n}\n\nasync function executeExtensionEmbedding(\n  extensionEmbedding: { name: string; embedBatch?: ExtensionEmbedBatch; embed?: ExtensionEmbedOne },\n  settings: PmSettings,\n  corpusInputs: string[],\n): Promise<number[][]> {\n  const model = settings.search?.embedding_model?.trim() || \"text-embedding-3-small\";\n  if (extensionEmbedding.embedBatch) {\n    const vectors = await Promise.resolve(\n      extensionEmbedding.embedBatch({\n        inputs: corpusInputs,\n        settings,\n        model,\n      }),\n    );\n    if (!Array.isArray(vectors)) {\n      throw new PmCliError(\n        `Extension search provider \"${extensionEmbedding.name}\" embedBatch must return an array of vectors`,\n        EXIT_CODE.GENERIC_FAILURE,\n      );\n    }\n    return vectors.map((vector, index) =>\n      assertVector(vector, `extension search provider \"${extensionEmbedding.name}\" embedBatch output at index ${index}`),\n    );\n  }\n  if (!extensionEmbedding.embed) {\n    throw new PmCliError(\n      `Extension search provider \"${extensionEmbedding.name}\" does not implement embed/embedBatch`,\n      EXIT_CODE.GENERIC_FAILURE,\n    );\n  }\n  const vectors: number[][] = [];\n  for (const [index, input] of corpusInputs.entries()) {\n    const vector = await Promise.resolve(\n      extensionEmbedding.embed({\n        input,\n        settings,\n        model,\n      }),\n    );\n    vectors.push(assertVector(vector, `extension search provider \"${extensionEmbedding.name}\" embed output at index ${index}`));\n  }\n  return vectors;\n}\n\nfunction resolveExtensionEmbeddingModel(settings: PmSettings): string {\n  return settings.search?.embedding_model?.trim() || \"text-embedding-3-small\";\n}\n\nfunction resolveReindexEmbeddingIdentity(\n  settings: PmSettings,\n  activeEmbeddingProvider: ReturnType<typeof resolveEmbeddingProviders>[\"active\"],\n  extensionEmbedding: { name: string } | null,\n): VectorizationEmbeddingIdentity {\n  const identity = extensionEmbedding\n    ? buildVectorizationEmbeddingIdentity(extensionEmbedding.name, resolveExtensionEmbeddingModel(settings))\n    : activeEmbeddingProvider\n      ? buildVectorizationEmbeddingIdentity(activeEmbeddingProvider.name, activeEmbeddingProvider.model)\n      : null;\n  if (!identity) {\n    throw new PmCliError(\n      `No embedding identity available for semantic reindex mode`,\n      EXIT_CODE.USAGE,\n    );\n  }\n  return identity;\n}\n\nfunction collectLedgerOrphanIds(ledgerEntries: Record<string, string>, currentIds: Set<string>): string[] {\n  return Object.keys(ledgerEntries)\n    .filter((id) => !currentIds.has(id))\n    .sort((left, right) => left.localeCompare(right));\n}\n\nasync function executeReindexEmbedding(\n  settings: PmSettings,\n  requestedMode: \"keyword\" | \"semantic\" | \"hybrid\",\n  activeEmbeddingProvider: ReturnType<typeof resolveEmbeddingProviders>[\"active\"],\n  extensionEmbedding: { name: string; embedBatch?: ExtensionEmbedBatch; embed?: ExtensionEmbedOne } | null,\n  documents: ItemDocument[],\n  semanticWarnings: string[],\n  semanticSummary: ReindexResult[\"semantic\"],\n  progressEnabled: boolean,\n): Promise<ReindexEmbeddingExecutionResult> {\n  const semanticProviderName = extensionEmbedding?.name ?? activeEmbeddingProvider?.name;\n  const corpusCharacterLimit = resolveSemanticCorpusCharacterLimit(\n    semanticProviderName,\n    settings.search.embedding_corpus_max_characters,\n  ).maxCharacters;\n  const corpusInputs = documents.map((document) =>\n    buildSemanticCorpusInput(document, {\n      providerName: semanticProviderName,\n      maxCharacters: corpusCharacterLimit,\n    }),\n  );\n  let vectors: number[][] = [];\n  let embeddingIdentity: VectorizationEmbeddingIdentity | null = null;\n  if (extensionEmbedding) {\n    try {\n      vectors = await executeExtensionEmbedding(extensionEmbedding, settings, corpusInputs);\n      embeddingIdentity = buildVectorizationEmbeddingIdentity(extensionEmbedding.name, resolveExtensionEmbeddingModel(settings));\n    } catch (error: unknown) {\n      if (!activeEmbeddingProvider) {\n        throw new PmCliError(\n          `Extension search provider \"${extensionEmbedding.name}\" failed to generate embeddings: ${error instanceof Error ? error.message : String(error)}`,\n          EXIT_CODE.GENERIC_FAILURE,\n        );\n      }\n      semanticWarnings.push(\n        `Extension search provider \"${extensionEmbedding.name}\" failed; falling back to built-in provider (${error instanceof Error ? error.message : String(error)})`,\n      );\n    }\n  }\n  if (vectors.length === 0) {\n    if (!activeEmbeddingProvider) {\n      throw new PmCliError(\n        `No embedding executor available for reindex mode '${requestedMode}'`,\n        EXIT_CODE.USAGE,\n      );\n    }\n    const embeddingResult = await executeEmbeddingBatchesWithRetry(activeEmbeddingProvider, settings, corpusInputs, {\n      onProgress: (event) => {\n        if (event.phase === \"complete\") {\n          semanticSummary.batches_completed = event.batch_index;\n        }\n        emitReindexProgress(\n          progressEnabled,\n          `embedding_batch_${event.phase} batch=${event.batch_index}/${event.batch_total} size=${event.batch_size} completed_inputs=${event.completed_inputs}/${event.total_inputs}`,\n        );\n      },\n    });\n    semanticWarnings.push(...embeddingResult.warnings);\n    vectors = embeddingResult.vectors;\n    embeddingIdentity = buildVectorizationEmbeddingIdentity(activeEmbeddingProvider.name, activeEmbeddingProvider.model);\n  }\n  emitReindexProgress(progressEnabled, `embedding_complete vectors=${vectors.length}`);\n  if (vectors.length !== documents.length) {\n    throw new PmCliError(\n      `Embedding output size mismatch (expected ${documents.length}, received ${vectors.length})`,\n      EXIT_CODE.GENERIC_FAILURE,\n    );\n  }\n  if (!embeddingIdentity) {\n    throw new PmCliError(\n      `No embedding identity available for reindex mode '${requestedMode}'`,\n      EXIT_CODE.USAGE,\n    );\n  }\n  return { vectors, embeddingIdentity };\n}\n\nasync function resetVectorStoreForReindex(\n  activeVectorStore: ReturnType<typeof resolveVectorStores>[\"active\"],\n  extensionVectorAdapter: ExtensionVectorAdapter | null,\n  ledgerEntries: Record<string, string>,\n  settings: PmSettings,\n  semanticWarnings: string[],\n  vectorDimension?: number,\n): Promise<void> {\n  const knownIds = Object.keys(ledgerEntries);\n  if (extensionVectorAdapter) {\n    if (knownIds.length > 0 && extensionVectorAdapter.delete) {\n      try {\n        await Promise.resolve(extensionVectorAdapter.delete({ ids: knownIds.sort((left, right) => left.localeCompare(right)), settings }));\n      } catch (error: unknown) {\n        throw new PmCliError(\n          `Extension vector adapter \"${extensionVectorAdapter.name}\" failed to delete vectors during reindex reset: ${error instanceof Error ? error.message : String(error)}`,\n          EXIT_CODE.GENERIC_FAILURE,\n        );\n      }\n    } else if (knownIds.length > 0) {\n      semanticWarnings.push(\n        `search_semantic_reindex_reset_skipped:adapter=${extensionVectorAdapter.name}:known_ids=${knownIds.length}`,\n      );\n    }\n    if (!activeVectorStore) {\n      return;\n    }\n  }\n  if (activeVectorStore) {\n    await executeVectorReset(activeVectorStore, knownIds, {}, vectorDimension);\n  }\n}\n\nasync function pruneReindexOrphanVectors(\n  activeVectorStore: ReturnType<typeof resolveVectorStores>[\"active\"],\n  extensionVectorAdapter: ExtensionVectorAdapter | null,\n  orphanIds: string[],\n  settings: PmSettings,\n  semanticWarnings: string[],\n): Promise<void> {\n  if (orphanIds.length === 0) {\n    return;\n  }\n  if (extensionVectorAdapter) {\n    if (extensionVectorAdapter.delete) {\n      try {\n        await Promise.resolve(extensionVectorAdapter.delete({ ids: orphanIds, settings }));\n      } catch (error: unknown) {\n        throw new PmCliError(\n          `Extension vector adapter \"${extensionVectorAdapter.name}\" failed to delete orphan vectors during reindex: ${error instanceof Error ? error.message : String(error)}`,\n          EXIT_CODE.GENERIC_FAILURE,\n        );\n      }\n    } else {\n      semanticWarnings.push(\n        `search_semantic_reindex_orphan_prune_skipped:adapter=${extensionVectorAdapter.name}:count=${orphanIds.length}`,\n      );\n    }\n    if (!activeVectorStore) {\n      return;\n    }\n  }\n  if (activeVectorStore) {\n    await executeVectorDelete(activeVectorStore, orphanIds);\n  }\n}\n\nexport async function runReindex(options: ReindexOptions, global: GlobalOptions): Promise<ReindexResult> {\n  const requestedMode = parseMode(options.mode);\n  const progressEnabled = shouldEmitReindexProgress(options);\n  emitReindexProgress(progressEnabled, `start mode=${requestedMode}`);\n  const pmRoot = resolvePmRoot(process.cwd(), global.path);\n  if (!(await pathExists(getSettingsPath(pmRoot)))) {\n    throw new PmCliError(`Tracker is not initialized at ${pmRoot}. Run pm init first.`, EXIT_CODE.NOT_FOUND);\n  }\n\n  const settings = resolveSettingsWithSemanticRuntimeDefaults(await readSettings(pmRoot)).settings;\n  let releaseReindexLock: (() => Promise<void>) | null = null;\n  try {\n    releaseReindexLock = await acquireLock(\n      pmRoot,\n      REINDEX_LOCK_ID,\n      settings.locks.ttl_seconds,\n      process.env.PM_AUTHOR ?? \"pm-reindex\",\n      false,\n      settings.governance.force_required_for_stale_lock,\n    );\n  } catch (error: unknown) {\n    if (error instanceof PmCliError && error.exitCode === EXIT_CODE.CONFLICT) {\n      throw new PmCliError(\n        \"Another pm reindex run is already active for this project. Wait for it to finish before starting a new keyword, semantic, or hybrid reindex.\",\n        EXIT_CODE.CONFLICT,\n        {\n          code: \"reindex_already_running\",\n          type: \"urn:pm-cli:error:reindex_already_running\",\n          why: \"Semantic reindex can be expensive and duplicate runs compete for the same local embedding model and vector store.\",\n          nextSteps: [\n            \"Check active pm reindex processes before starting another reindex.\",\n            \"Rerun with --progress when you need non-interactive visibility.\",\n          ],\n        },\n      );\n    }\n    throw error;\n  }\n\n  try {\n  const typeRegistry = resolveItemTypeRegistry(settings, getActiveExtensionRegistrations());\n  const extensionEmbedding = resolveExtensionSearchEmbedding(settings);\n  const extensionVectorAdapter = resolveExtensionVectorAdapter(settings);\n  let activeEmbeddingProvider: ReturnType<typeof resolveEmbeddingProviders>[\"active\"] = null;\n  let activeVectorStore: ReturnType<typeof resolveVectorStores>[\"active\"] = null;\n  if (requestedMode !== \"keyword\") {\n    const providerResolution = resolveEmbeddingProviders(settings);\n    if (!providerResolution.active && !extensionEmbedding) {\n      throw new PmCliError(\n        `Reindex mode '${requestedMode}' requires a configured embedding provider in settings.providers.openai/settings.providers.ollama or an extension provider selected by settings.search.provider`,\n        EXIT_CODE.USAGE,\n      );\n    }\n    const vectorResolution = resolveVectorStores(settings);\n    if (!vectorResolution.active && !extensionVectorAdapter) {\n      throw new PmCliError(\n        `Reindex mode '${requestedMode}' requires a configured vector store in settings.vector_store.qdrant/settings.vector_store.lancedb or an extension adapter selected by settings.vector_store.adapter`,\n        EXIT_CODE.USAGE,\n      );\n    }\n    activeEmbeddingProvider = providerResolution.active;\n    activeVectorStore = vectorResolution.active;\n  }\n  const mode = requestedMode;\n  emitReindexProgress(progressEnabled, \"loading item corpus\");\n  const loadedCandidates = await loadDocumentCandidates(pmRoot, settings.item_format, typeRegistry.type_to_folder, settings.schema);\n  const reindexWarnings = [...loadedCandidates.warnings];\n  const documentCandidates = loadedCandidates.candidates;\n  const metadataDocuments: ItemDocument[] = documentCandidates.map((candidate) => ({\n    metadata: candidate.metadata,\n    body: typeof candidate.body === \"string\" ? candidate.body : \"\",\n  }));\n  emitReindexProgress(progressEnabled, `loaded_items=${metadataDocuments.length}`);\n  const generatedAt = nowIso();\n\n  const manifest = {\n    version: 1,\n    mode,\n    generated_at: generatedAt,\n    total_items: metadataDocuments.length,\n    items: metadataDocuments.map((document) => ({\n      id: document.metadata.id,\n      type: document.metadata.type,\n      status: document.metadata.status,\n      priority: document.metadata.priority,\n      updated_at: document.metadata.updated_at,\n    })),\n  };\n\n  const manifestPath = path.join(pmRoot, MANIFEST_PATH);\n  const embeddingsPath = path.join(pmRoot, EMBEDDINGS_PATH);\n\n  let documentsForKeywordArtifacts =\n    mode === \"keyword\"\n      ? await hydrateDocuments(pmRoot, documentCandidates, settings.schema, reindexWarnings)\n      : metadataDocuments;\n  const semanticWarnings: string[] = [];\n  const vectorizationLedgerEntries: Record<string, string> = {};\n  let vectorizationEmbeddingMetadata: VectorizationEmbeddingMetadata | null = null;\n  const semanticSummary = {\n    enabled: mode !== \"keyword\",\n    stale_items: 0,\n    unchanged_items: 0,\n    embedded_items: 0,\n    vector_upserted: 0,\n    batches_completed: 0,\n  };\n  if (mode !== \"keyword\" && metadataDocuments.length > 0) {\n    const ledger = await readVectorizationStatusLedger(pmRoot);\n    semanticWarnings.push(...ledger.warnings);\n    const embeddingIdentity = resolveReindexEmbeddingIdentity(settings, activeEmbeddingProvider, extensionEmbedding);\n    const currentIds = new Set(metadataDocuments.map((document) => document.metadata.id));\n    const orphanIds = collectLedgerOrphanIds(ledger.entries, currentIds);\n    let resetRequired = hasVectorizationEmbeddingIdentityChanged(ledger.embedding, embeddingIdentity);\n    let staleIds = new Set(\n      (resetRequired ? metadataDocuments : metadataDocuments.filter((document) => ledger.entries[document.metadata.id] !== document.metadata.updated_at))\n        .map((document) => document.metadata.id),\n    );\n    let staleDocuments = staleIds.size > 0\n      ? await hydrateDocuments(pmRoot, documentCandidates, settings.schema, reindexWarnings, staleIds)\n      : [];\n    let freshDocuments = metadataDocuments.length - staleDocuments.length;\n    semanticSummary.stale_items = staleDocuments.length;\n    semanticSummary.unchanged_items = freshDocuments;\n    for (const document of metadataDocuments) {\n      vectorizationLedgerEntries[document.metadata.id] = document.metadata.updated_at;\n    }\n    if (staleDocuments.length === 0) {\n      emitReindexProgress(progressEnabled, `embedding_skipped unchanged_items=${freshDocuments}`);\n      semanticWarnings.push(`search_semantic_reindex_skipped_unchanged:count=${freshDocuments}`);\n    } else {\n      emitReindexProgress(progressEnabled, `embedding_start items=${staleDocuments.length} unchanged_items=${freshDocuments}`);\n      let embeddingResult = await executeReindexEmbedding(\n        settings,\n        requestedMode,\n        activeEmbeddingProvider,\n        extensionEmbedding,\n        staleDocuments,\n        semanticWarnings,\n        semanticSummary,\n        progressEnabled,\n      );\n      let vectors = embeddingResult.vectors;\n      let actualEmbeddingIdentity = embeddingResult.embeddingIdentity;\n      let vectorDimension = inferConsistentVectorDimension(vectors, \"Reindex embeddings\");\n      if (\n        !resetRequired &&\n        (hasVectorizationEmbeddingIdentityChanged(ledger.embedding, actualEmbeddingIdentity) ||\n          hasVectorizationVectorDimensionChanged(ledger.embedding, vectorDimension))\n      ) {\n        resetRequired = true;\n        staleIds = new Set(metadataDocuments.map((document) => document.metadata.id));\n        staleDocuments = await hydrateDocuments(pmRoot, documentCandidates, settings.schema, reindexWarnings, staleIds);\n        freshDocuments = 0;\n        semanticSummary.stale_items = staleDocuments.length;\n        semanticSummary.unchanged_items = 0;\n        emitReindexProgress(progressEnabled, `embedding_dimension_changed reset_items=${staleDocuments.length}`);\n        embeddingResult = await executeReindexEmbedding(\n          settings,\n          requestedMode,\n          activeEmbeddingProvider,\n          extensionEmbedding,\n          staleDocuments,\n          semanticWarnings,\n          semanticSummary,\n          progressEnabled,\n        );\n        vectors = embeddingResult.vectors;\n        actualEmbeddingIdentity = embeddingResult.embeddingIdentity;\n        vectorDimension = inferConsistentVectorDimension(vectors, \"Reindex embeddings\");\n      }\n      if (resetRequired) {\n        emitReindexProgress(progressEnabled, \"vector_reset_start\");\n        await resetVectorStoreForReindex(\n          activeVectorStore,\n          extensionVectorAdapter,\n          ledger.entries,\n          settings,\n          semanticWarnings,\n          ledger.embedding ? vectorDimension : undefined,\n        );\n        emitReindexProgress(progressEnabled, \"vector_reset_complete\");\n      } else {\n        await pruneReindexOrphanVectors(activeVectorStore, extensionVectorAdapter, orphanIds, settings, semanticWarnings);\n      }\n      vectorizationEmbeddingMetadata = buildVectorizationEmbeddingMetadata(actualEmbeddingIdentity, vectorDimension);\n      const points = staleDocuments.map((document, index) => ({\n        id: document.metadata.id,\n        vector: assertVector(vectors[index], `reindex embeddings output at index ${index}`),\n        payload: {\n          id: document.metadata.id,\n          type: document.metadata.type,\n          status: document.metadata.status,\n          priority: document.metadata.priority,\n          updated_at: document.metadata.updated_at,\n        },\n      }));\n      semanticSummary.embedded_items = vectors.length;\n      if (extensionVectorAdapter) {\n        try {\n          emitReindexProgress(progressEnabled, `vector_upsert_start adapter=${extensionVectorAdapter.name} points=${points.length}`);\n          await Promise.resolve(\n            extensionVectorAdapter.upsert({\n              points,\n              settings,\n            }),\n          );\n          semanticSummary.vector_upserted = points.length;\n          emitReindexProgress(progressEnabled, `vector_upsert_complete adapter=${extensionVectorAdapter.name}`);\n        } catch (error: unknown) {\n          if (!activeVectorStore) {\n            throw new PmCliError(\n              `Extension vector adapter \"${extensionVectorAdapter.name}\" failed to upsert vectors: ${error instanceof Error ? error.message : String(error)}`,\n              EXIT_CODE.GENERIC_FAILURE,\n            );\n          }\n          semanticWarnings.push(\n            `Extension vector adapter \"${extensionVectorAdapter.name}\" failed; falling back to built-in vector store (${error instanceof Error ? error.message : String(error)})`,\n          );\n          emitReindexProgress(progressEnabled, \"vector_upsert_fallback built_in_store\");\n          await executeVectorUpsert(activeVectorStore, points);\n          semanticSummary.vector_upserted = points.length;\n          emitReindexProgress(progressEnabled, `vector_upsert_complete adapter=${activeVectorStore.name}`);\n        }\n      } else if (activeVectorStore) {\n        emitReindexProgress(progressEnabled, `vector_upsert_start adapter=${activeVectorStore.name} points=${points.length}`);\n        await executeVectorUpsert(activeVectorStore, points);\n        semanticSummary.vector_upserted = points.length;\n        emitReindexProgress(progressEnabled, `vector_upsert_complete adapter=${activeVectorStore.name}`);\n      } else {\n        throw new PmCliError(\n          `No vector upsert executor available for reindex mode '${requestedMode}'`,\n          EXIT_CODE.USAGE,\n        );\n      }\n      if (freshDocuments > 0) {\n        semanticWarnings.push(`search_semantic_reindex_skipped_unchanged:count=${freshDocuments}`);\n      }\n      const staleDocumentsById = new Map(staleDocuments.map((document) => [document.metadata.id, document]));\n      documentsForKeywordArtifacts = metadataDocuments.map(\n        (document) => staleDocumentsById.get(document.metadata.id) ?? document,\n      );\n    }\n    if (staleDocuments.length === 0) {\n      await pruneReindexOrphanVectors(activeVectorStore, extensionVectorAdapter, orphanIds, settings, semanticWarnings);\n      vectorizationEmbeddingMetadata = ledger.embedding;\n    }\n  }\n  const embeddingsLines = documentsForKeywordArtifacts.map((document) => JSON.stringify(buildKeywordRecord(document, mode))).join(\"\\n\");\n  emitReindexProgress(progressEnabled, \"writing keyword artifacts\");\n  await writeFileAtomic(manifestPath, `${JSON.stringify(manifest, null, 2)}\\n`);\n  await writeFileAtomic(embeddingsPath, `${embeddingsLines}\\n`);\n  const vectorizationWarnings: string[] = [];\n  if (mode !== \"keyword\") {\n    try {\n      emitReindexProgress(progressEnabled, \"writing vectorization status ledger\");\n      await writeVectorizationStatusLedger(pmRoot, vectorizationLedgerEntries, vectorizationEmbeddingMetadata);\n    } catch (error: unknown) {\n      vectorizationWarnings.push(\n        `search_vectorization_status_ledger_write_failed:${error instanceof Error ? error.message : String(error)}`,\n      );\n    }\n  }\n  const hookWarnings = [\n    ...(await runActiveOnWriteHooks({\n      path: manifestPath,\n      scope: \"project\",\n      op: \"reindex:manifest\",\n    })),\n    ...(await runActiveOnWriteHooks({\n      path: embeddingsPath,\n      scope: \"project\",\n      op: \"reindex:embeddings\",\n    })),\n    ...(await runActiveOnIndexHooks({\n      mode,\n      total_items: metadataDocuments.length,\n    })),\n  ];\n  emitReindexProgress(progressEnabled, \"done\");\n\n  return {\n    ok: true,\n    mode,\n    total_items: metadataDocuments.length,\n    semantic: semanticSummary,\n    artifacts: {\n      manifest: MANIFEST_PATH,\n      embeddings: EMBEDDINGS_PATH,\n    },\n    warnings: [...reindexWarnings, ...semanticWarnings, ...vectorizationWarnings, ...hookWarnings],\n    generated_at: generatedAt,\n  };\n  } finally {\n    await releaseReindexLock?.();\n  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package/dist/cli/commands/search.d.ts

@@ -2,6 +2,7 @@ import type { GlobalOptions } from "../../core/shared/command-types.js";
 import type { ItemFrontMatter } from "../../types/index.js";
 export interface SearchOptions {
     mode?: string;
+    semanticWeight?: string | number;
     includeLinked?: boolean;
     titleExact?: boolean;
     phraseExact?: boolean;