@ulrichc1/sparn 1.2.1 → 1.2.2

package/dist/mcp/index.js.map

@@ -1 +1 @@
-{"version":3,"sources":["../../src/mcp/index.ts","../../src/core/kv-memory.ts","../../src/mcp/server.ts","../../src/adapters/generic.ts","../../src/core/btsp-embedder.ts","../../src/utils/hash.ts","../../src/core/confidence-states.ts","../../src/core/engram-scorer.ts","../../src/utils/tokenizer.ts","../../src/core/sparse-pruner.ts","../../src/core/sleep-compressor.ts","../../src/types/config.ts"],"sourcesContent":["#!/usr/bin/env node\n\n/**\n * Sparn MCP Server Entry Point\n *\n * Starts the Sparn MCP server using stdio transport.\n * This is the main entry point for MCP client integrations\n * (Claude Desktop, VS Code, etc.).\n *\n * Usage:\n *   node dist/mcp/index.js\n *   node dist/mcp/index.cjs\n *\n * Environment variables:\n *   SPARN_DB_PATH - Custom path for the SQLite database (default: .sparn/memory.db)\n */\n\nimport { mkdirSync } from 'node:fs';\nimport { dirname, resolve } from 'node:path';\nimport { StdioServerTransport } from '@modelcontextprotocol/sdk/server/stdio.js';\nimport { createKVMemory } from '../core/kv-memory.js';\nimport { createSparnMcpServer } from './server.js';\n\nasync function main(): Promise<void> {\n  const dbPath = resolve(process.env['SPARN_DB_PATH'] ?? '.sparn/memory.db');\n\n  // Ensure the database directory exists\n  mkdirSync(dirname(dbPath), { recursive: true });\n\n  const memory = await createKVMemory(dbPath);\n\n  const server = createSparnMcpServer({ memory });\n\n  const transport = new StdioServerTransport();\n  await server.connect(transport);\n\n  // Log to stderr (stdout is reserved for MCP JSON-RPC messages)\n  console.error('Sparn MCP server running on stdio');\n\n  // Graceful shutdown\n  const shutdown = async () => {\n    console.error('Shutting down Sparn MCP server...');\n    await server.close();\n    await memory.close();\n    process.exit(0);\n  };\n\n  process.on('SIGINT', shutdown);\n  process.on('SIGTERM', shutdown);\n}\n\nmain().catch((error) => {\n  console.error('Fatal error in Sparn MCP server:', error);\n  process.exit(1);\n});\n","/**\n * KV Memory Store Module\n * Implements hippocampal key-value storage with dual index/value tables.\n * Maps to: Hippocampal Key-Value — the hippocampus separates what to store from how to retrieve it.\n */\n\nimport { copyFileSync, existsSync } from 'node:fs';\nimport Database from 'better-sqlite3';\nimport type { MemoryEntry, MemoryQueryFilters } from '../types/memory.js';\n\n/**\n * Optimization statistics record.\n */\nexport interface OptimizationStats {\n  id: number;\n  timestamp: number;\n  tokens_before: number;\n  tokens_after: number;\n  entries_pruned: number;\n  duration_ms: number;\n}\n\n/**\n * KV Memory interface.\n */\nexport interface KVMemory {\n  /** Store a memory entry */\n  put(entry: MemoryEntry): Promise<void>;\n\n  /** Retrieve a memory entry by ID */\n  get(id: string): Promise<MemoryEntry | null>;\n\n  /** Query entries by filters */\n  query(filters: MemoryQueryFilters): Promise<MemoryEntry[]>;\n\n  /** Delete a memory entry */\n  delete(id: string): Promise<void>;\n\n  /** List all entry IDs */\n  list(): Promise<string[]>;\n\n  /** Compact database (remove expired entries) */\n  compact(): Promise<number>;\n\n  /** Close database connection */\n  close(): Promise<void>;\n\n  /** Record optimization statistics */\n  recordOptimization(stats: Omit<OptimizationStats, 'id'>): Promise<void>;\n\n  /** Get all optimization statistics */\n  getOptimizationStats(): Promise<OptimizationStats[]>;\n\n  /** Clear all optimization statistics */\n  clearOptimizationStats(): Promise<void>;\n}\n\n/**\n * Create a timestamped backup of the database\n * @param dbPath - Path to database file\n * @returns Path to backup file\n */\nfunction createBackup(dbPath: string): string {\n  const timestamp = new Date().toISOString().replace(/[:.]/g, '-');\n  const backupPath = `${dbPath}.backup-${timestamp}`;\n\n  try {\n    copyFileSync(dbPath, backupPath);\n    console.log(`✓ Database backed up to: ${backupPath}`);\n    return backupPath;\n  } catch (error) {\n    console.error(`Warning: Could not create backup: ${error}`);\n    return '';\n  }\n}\n\n/**\n * Create KV Memory store with SQLite backend.\n *\n * Initializes database with dual table schema:\n * - entries_index: Fast lookups (id, hash, timestamp, score, ttl, state, accessCount, isBTSP)\n * - entries_value: Content storage (id, content, tags, metadata)\n *\n * @param dbPath - Path to SQLite database file\n * @returns KVMemory instance\n */\nexport async function createKVMemory(dbPath: string): Promise<KVMemory> {\n  // Detect database corruption and create backup\n  let db: Database.Database;\n  try {\n    db = new Database(dbPath);\n\n    // Quick integrity check\n    const integrityCheck = db.pragma('quick_check', { simple: true });\n    if (integrityCheck !== 'ok') {\n      console.error('⚠ Database corruption detected!');\n\n      // Create backup before attempting recovery\n      if (existsSync(dbPath)) {\n        const backupPath = createBackup(dbPath);\n        if (backupPath) {\n          console.log(`Backup created at: ${backupPath}`);\n        }\n      }\n\n      // Try to recover\n      console.log('Attempting database recovery...');\n      db.close();\n      db = new Database(dbPath);\n    }\n  } catch (error) {\n    console.error('⚠ Database error detected:', error);\n\n    // Create backup if database exists\n    if (existsSync(dbPath)) {\n      createBackup(dbPath);\n      console.log('Creating new database...');\n    }\n\n    db = new Database(dbPath);\n  }\n\n  // Enable WAL mode for better concurrency\n  db.pragma('journal_mode = WAL');\n\n  // Create entries_index table\n  db.exec(`\n    CREATE TABLE IF NOT EXISTS entries_index (\n      id TEXT PRIMARY KEY NOT NULL,\n      hash TEXT UNIQUE NOT NULL,\n      timestamp INTEGER NOT NULL,\n      score REAL NOT NULL DEFAULT 0.0 CHECK(score >= 0.0 AND score <= 1.0),\n      ttl INTEGER NOT NULL CHECK(ttl >= 0),\n      state TEXT NOT NULL CHECK(state IN ('silent', 'ready', 'active')),\n      accessCount INTEGER NOT NULL DEFAULT 0 CHECK(accessCount >= 0),\n      isBTSP INTEGER NOT NULL DEFAULT 0 CHECK(isBTSP IN (0, 1)),\n      created_at INTEGER NOT NULL DEFAULT (strftime('%s', 'now'))\n    );\n  `);\n\n  // Create entries_value table\n  db.exec(`\n    CREATE TABLE IF NOT EXISTS entries_value (\n      id TEXT PRIMARY KEY NOT NULL,\n      content TEXT NOT NULL,\n      tags TEXT,\n      metadata TEXT,\n      FOREIGN KEY (id) REFERENCES entries_index(id) ON DELETE CASCADE\n    );\n  `);\n\n  // Create optimization_stats table\n  db.exec(`\n    CREATE TABLE IF NOT EXISTS optimization_stats (\n      id INTEGER PRIMARY KEY AUTOINCREMENT,\n      timestamp INTEGER NOT NULL DEFAULT (strftime('%s', 'now')),\n      tokens_before INTEGER NOT NULL,\n      tokens_after INTEGER NOT NULL,\n      entries_pruned INTEGER NOT NULL,\n      duration_ms INTEGER NOT NULL\n    );\n  `);\n\n  // Create indexes\n  db.exec(`\n    CREATE INDEX IF NOT EXISTS idx_entries_state ON entries_index(state);\n    CREATE INDEX IF NOT EXISTS idx_entries_score ON entries_index(score DESC);\n    CREATE INDEX IF NOT EXISTS idx_entries_hash ON entries_index(hash);\n    CREATE INDEX IF NOT EXISTS idx_entries_timestamp ON entries_index(timestamp DESC);\n    CREATE INDEX IF NOT EXISTS idx_stats_timestamp ON optimization_stats(timestamp DESC);\n  `);\n\n  // Prepare statements for better performance\n  const putIndexStmt = db.prepare(`\n    INSERT OR REPLACE INTO entries_index\n    (id, hash, timestamp, score, ttl, state, accessCount, isBTSP)\n    VALUES (?, ?, ?, ?, ?, ?, ?, ?)\n  `);\n\n  const putValueStmt = db.prepare(`\n    INSERT OR REPLACE INTO entries_value\n    (id, content, tags, metadata)\n    VALUES (?, ?, ?, ?)\n  `);\n\n  const getStmt = db.prepare(`\n    SELECT\n      i.id, i.hash, i.timestamp, i.score, i.ttl, i.state, i.accessCount, i.isBTSP,\n      v.content, v.tags, v.metadata\n    FROM entries_index i\n    JOIN entries_value v ON i.id = v.id\n    WHERE i.id = ?\n  `);\n\n  const deleteIndexStmt = db.prepare('DELETE FROM entries_index WHERE id = ?');\n  const deleteValueStmt = db.prepare('DELETE FROM entries_value WHERE id = ?');\n\n  return {\n    async put(entry: MemoryEntry): Promise<void> {\n      const transaction = db.transaction(() => {\n        putIndexStmt.run(\n          entry.id,\n          entry.hash,\n          entry.timestamp,\n          entry.score,\n          entry.ttl,\n          entry.state,\n          entry.accessCount,\n          entry.isBTSP ? 1 : 0,\n        );\n\n        putValueStmt.run(\n          entry.id,\n          entry.content,\n          JSON.stringify(entry.tags),\n          JSON.stringify(entry.metadata),\n        );\n      });\n\n      transaction();\n    },\n\n    async get(id: string): Promise<MemoryEntry | null> {\n      const row = getStmt.get(id) as unknown;\n\n      if (!row) {\n        return null;\n      }\n\n      const r = row as {\n        id: string;\n        hash: string;\n        timestamp: number;\n        score: number;\n        ttl: number;\n        state: string;\n        accessCount: number;\n        isBTSP: number;\n        content: string;\n        tags: string | null;\n        metadata: string | null;\n      };\n\n      return {\n        id: r.id,\n        content: r.content,\n        hash: r.hash,\n        timestamp: r.timestamp,\n        score: r.score,\n        ttl: r.ttl,\n        state: r.state as 'silent' | 'ready' | 'active',\n        accessCount: r.accessCount,\n        tags: r.tags ? JSON.parse(r.tags) : [],\n        metadata: r.metadata ? JSON.parse(r.metadata) : {},\n        isBTSP: r.isBTSP === 1,\n      };\n    },\n\n    async query(filters: MemoryQueryFilters): Promise<MemoryEntry[]> {\n      let sql = `\n        SELECT\n          i.id, i.hash, i.timestamp, i.score, i.ttl, i.state, i.accessCount, i.isBTSP,\n          v.content, v.tags, v.metadata\n        FROM entries_index i\n        JOIN entries_value v ON i.id = v.id\n        WHERE 1=1\n      `;\n\n      const params: unknown[] = [];\n\n      if (filters.state) {\n        sql += ' AND i.state = ?';\n        params.push(filters.state);\n      }\n\n      if (filters.minScore !== undefined) {\n        sql += ' AND i.score >= ?';\n        params.push(filters.minScore);\n      }\n\n      if (filters.maxScore !== undefined) {\n        sql += ' AND i.score <= ?';\n        params.push(filters.maxScore);\n      }\n\n      if (filters.isBTSP !== undefined) {\n        sql += ' AND i.isBTSP = ?';\n        params.push(filters.isBTSP ? 1 : 0);\n      }\n\n      sql += ' ORDER BY i.score DESC';\n\n      if (filters.limit) {\n        sql += ' LIMIT ?';\n        params.push(filters.limit);\n      }\n\n      if (filters.offset) {\n        sql += ' OFFSET ?';\n        params.push(filters.offset);\n      }\n\n      const stmt = db.prepare(sql);\n      const rows = stmt.all(...params) as unknown[];\n\n      return rows.map((row) => {\n        const r = row as {\n          id: string;\n          hash: string;\n          timestamp: number;\n          score: number;\n          ttl: number;\n          state: string;\n          accessCount: number;\n          isBTSP: number;\n          content: string;\n          tags: string | null;\n          metadata: string | null;\n        };\n\n        return {\n          id: r.id,\n          content: r.content,\n          hash: r.hash,\n          timestamp: r.timestamp,\n          score: r.score,\n          ttl: r.ttl,\n          state: r.state as 'silent' | 'ready' | 'active',\n          accessCount: r.accessCount,\n          tags: r.tags ? JSON.parse(r.tags) : [],\n          metadata: r.metadata ? JSON.parse(r.metadata) : {},\n          isBTSP: r.isBTSP === 1,\n        };\n      });\n    },\n\n    async delete(id: string): Promise<void> {\n      const transaction = db.transaction(() => {\n        deleteIndexStmt.run(id);\n        deleteValueStmt.run(id);\n      });\n\n      transaction();\n    },\n\n    async list(): Promise<string[]> {\n      const stmt = db.prepare('SELECT id FROM entries_index');\n      const rows = stmt.all() as { id: string }[];\n      return rows.map((r) => r.id);\n    },\n\n    async compact(): Promise<number> {\n      const before = db.prepare('SELECT COUNT(*) as count FROM entries_index').get() as {\n        count: number;\n      };\n\n      // Remove fully decayed entries (this will be enhanced in sleep-compressor)\n      db.exec('DELETE FROM entries_index WHERE ttl <= 0');\n\n      db.exec('VACUUM');\n\n      const after = db.prepare('SELECT COUNT(*) as count FROM entries_index').get() as {\n        count: number;\n      };\n\n      return before.count - after.count;\n    },\n\n    async close(): Promise<void> {\n      db.close();\n    },\n\n    async recordOptimization(stats: Omit<OptimizationStats, 'id'>): Promise<void> {\n      const stmt = db.prepare(`\n        INSERT INTO optimization_stats (timestamp, tokens_before, tokens_after, entries_pruned, duration_ms)\n        VALUES (?, ?, ?, ?, ?)\n      `);\n\n      stmt.run(\n        stats.timestamp,\n        stats.tokens_before,\n        stats.tokens_after,\n        stats.entries_pruned,\n        stats.duration_ms,\n      );\n    },\n\n    async getOptimizationStats(): Promise<OptimizationStats[]> {\n      const stmt = db.prepare(`\n        SELECT id, timestamp, tokens_before, tokens_after, entries_pruned, duration_ms\n        FROM optimization_stats\n        ORDER BY timestamp DESC\n      `);\n\n      const rows = stmt.all() as OptimizationStats[];\n      return rows;\n    },\n\n    async clearOptimizationStats(): Promise<void> {\n      db.exec('DELETE FROM optimization_stats');\n    },\n  };\n}\n","/**\n * Sparn MCP Server - Model Context Protocol server implementation\n *\n * Exposes Sparn's neuroscience-inspired context optimization as MCP tools,\n * enabling integration with Claude Desktop, VS Code, and other MCP clients.\n *\n * Tools:\n * - sparn_optimize: Optimize context with configurable options\n * - sparn_stats: Get optimization statistics\n * - sparn_consolidate: Run memory consolidation (sleep replay)\n */\n\nimport { McpServer } from '@modelcontextprotocol/sdk/server/mcp.js';\nimport { z } from 'zod';\nimport { createGenericAdapter } from '../adapters/generic.js';\nimport type { KVMemory } from '../core/kv-memory.js';\nimport { createSleepCompressor } from '../core/sleep-compressor.js';\nimport type { SparnConfig } from '../types/config.js';\nimport { DEFAULT_CONFIG } from '../types/config.js';\n\n/**\n * Options for creating the Sparn MCP server.\n */\nexport interface SparnMcpServerOptions {\n  /** KV memory store instance */\n  memory: KVMemory;\n  /** Sparn configuration (defaults to DEFAULT_CONFIG) */\n  config?: SparnConfig;\n}\n\n/**\n * Create and configure the Sparn MCP server with all tools registered.\n *\n * @param options - Server options including memory store and config\n * @returns Configured McpServer instance ready to connect to a transport\n */\nexport function createSparnMcpServer(options: SparnMcpServerOptions): McpServer {\n  const { memory, config = DEFAULT_CONFIG } = options;\n\n  const server = new McpServer({\n    name: 'sparn',\n    version: '1.1.1',\n  });\n\n  registerOptimizeTool(server, memory, config);\n  registerStatsTool(server, memory);\n  registerConsolidateTool(server, memory);\n\n  return server;\n}\n\n/**\n * Register the sparn_optimize tool.\n *\n * Optimizes input context using the neuroscience-inspired pipeline:\n * BTSP detection, engram scoring, confidence states, and sparse pruning.\n */\nfunction registerOptimizeTool(server: McpServer, memory: KVMemory, config: SparnConfig): void {\n  server.registerTool(\n    'sparn_optimize',\n    {\n      title: 'Sparn Optimize',\n      description:\n        'Optimize context using neuroscience-inspired pruning. ' +\n        'Applies BTSP detection, engram scoring, confidence states, ' +\n        'and sparse pruning to reduce token usage while preserving important information.',\n      inputSchema: {\n        context: z.string().describe('The context text to optimize'),\n        dryRun: z\n          .boolean()\n          .optional()\n          .default(false)\n          .describe('If true, do not persist changes to the memory store'),\n        verbose: z\n          .boolean()\n          .optional()\n          .default(false)\n          .describe('If true, include per-entry details in the response'),\n        threshold: z\n          .number()\n          .min(0)\n          .max(100)\n          .optional()\n          .describe('Custom pruning threshold (1-100, overrides config)'),\n      },\n    },\n    async ({ context, dryRun, verbose, threshold }) => {\n      try {\n        const effectiveConfig = threshold\n          ? { ...config, pruning: { ...config.pruning, threshold } }\n          : config;\n\n        const adapter = createGenericAdapter(memory, effectiveConfig);\n        const result = await adapter.optimize(context, {\n          dryRun,\n          verbose,\n          threshold,\n        });\n\n        const response = {\n          optimizedContext: result.optimizedContext,\n          tokensBefore: result.tokensBefore,\n          tokensAfter: result.tokensAfter,\n          reduction: `${(result.reduction * 100).toFixed(1)}%`,\n          entriesProcessed: result.entriesProcessed,\n          entriesKept: result.entriesKept,\n          durationMs: result.durationMs,\n          stateDistribution: result.stateDistribution,\n          ...(verbose && result.details ? { details: result.details } : {}),\n        };\n\n        return {\n          content: [\n            {\n              type: 'text' as const,\n              text: JSON.stringify(response, null, 2),\n            },\n          ],\n        };\n      } catch (error) {\n        const message = error instanceof Error ? error.message : String(error);\n        return {\n          content: [\n            {\n              type: 'text' as const,\n              text: JSON.stringify({ error: message }),\n            },\n          ],\n          isError: true,\n        };\n      }\n    },\n  );\n}\n\n/**\n * Register the sparn_stats tool.\n *\n * Returns optimization statistics from the memory store, including\n * total commands run, tokens saved, and average reduction.\n */\nfunction registerStatsTool(server: McpServer, memory: KVMemory): void {\n  server.registerTool(\n    'sparn_stats',\n    {\n      title: 'Sparn Stats',\n      description:\n        'Get optimization statistics including total commands run, ' +\n        'tokens saved, and average reduction percentage.',\n      inputSchema: {\n        reset: z\n          .boolean()\n          .optional()\n          .default(false)\n          .describe('If true, reset all optimization statistics'),\n      },\n    },\n    async ({ reset }) => {\n      try {\n        if (reset) {\n          await memory.clearOptimizationStats();\n          return {\n            content: [\n              {\n                type: 'text' as const,\n                text: JSON.stringify(\n                  {\n                    message: 'Optimization statistics have been reset.',\n                    totalCommands: 0,\n                    totalTokensSaved: 0,\n                    averageReduction: '0.0%',\n                  },\n                  null,\n                  2,\n                ),\n              },\n            ],\n          };\n        }\n\n        const stats = await memory.getOptimizationStats();\n        const totalCommands = stats.length;\n\n        const totalTokensSaved = stats.reduce(\n          (sum, s) => sum + (s.tokens_before - s.tokens_after),\n          0,\n        );\n\n        const averageReduction =\n          totalCommands > 0\n            ? stats.reduce((sum, s) => {\n                const reduction =\n                  s.tokens_before > 0 ? (s.tokens_before - s.tokens_after) / s.tokens_before : 0;\n                return sum + reduction;\n              }, 0) / totalCommands\n            : 0;\n\n        const recentOptimizations = stats.slice(0, 10).map((s) => ({\n          timestamp: new Date(s.timestamp).toISOString(),\n          tokensBefore: s.tokens_before,\n          tokensAfter: s.tokens_after,\n          entriesPruned: s.entries_pruned,\n          durationMs: s.duration_ms,\n          reduction: `${(\n            ((s.tokens_before - s.tokens_after) / Math.max(s.tokens_before, 1)) * 100\n          ).toFixed(1)}%`,\n        }));\n\n        const response = {\n          totalCommands,\n          totalTokensSaved,\n          averageReduction: `${(averageReduction * 100).toFixed(1)}%`,\n          recentOptimizations,\n        };\n\n        return {\n          content: [\n            {\n              type: 'text' as const,\n              text: JSON.stringify(response, null, 2),\n            },\n          ],\n        };\n      } catch (error) {\n        const message = error instanceof Error ? error.message : String(error);\n        return {\n          content: [\n            {\n              type: 'text' as const,\n              text: JSON.stringify({ error: message }),\n            },\n          ],\n          isError: true,\n        };\n      }\n    },\n  );\n}\n\n/**\n * Register the sparn_consolidate tool.\n *\n * Runs the sleep-compressor consolidation process, which removes\n * decayed entries and merges duplicates in the memory store.\n */\nfunction registerConsolidateTool(server: McpServer, memory: KVMemory): void {\n  server.registerTool(\n    'sparn_consolidate',\n    {\n      title: 'Sparn Consolidate',\n      description:\n        'Run memory consolidation (sleep replay). ' +\n        'Removes decayed entries and merges duplicates to reclaim space. ' +\n        'Inspired by the neuroscience principle of sleep-based memory consolidation.',\n    },\n    async () => {\n      try {\n        const allIds = await memory.list();\n        const allEntries = await Promise.all(\n          allIds.map(async (id) => {\n            const entry = await memory.get(id);\n            return entry;\n          }),\n        );\n\n        const entries = allEntries.filter((e) => e !== null);\n\n        const compressor = createSleepCompressor();\n        const result = compressor.consolidate(entries);\n\n        // Apply changes to memory store\n        for (const removed of result.removed) {\n          await memory.delete(removed.id);\n        }\n\n        for (const kept of result.kept) {\n          await memory.put(kept);\n        }\n\n        // Run VACUUM to reclaim disk space\n        await memory.compact();\n\n        const response = {\n          entriesBefore: result.entriesBefore,\n          entriesAfter: result.entriesAfter,\n          decayedRemoved: result.decayedRemoved,\n          duplicatesRemoved: result.duplicatesRemoved,\n          compressionRatio: `${(result.compressionRatio * 100).toFixed(1)}%`,\n          durationMs: result.durationMs,\n          vacuumCompleted: true,\n        };\n\n        return {\n          content: [\n            {\n              type: 'text' as const,\n              text: JSON.stringify(response, null, 2),\n            },\n          ],\n        };\n      } catch (error) {\n        const message = error instanceof Error ? error.message : String(error);\n        return {\n          content: [\n            {\n              type: 'text' as const,\n              text: JSON.stringify({ error: message }),\n            },\n          ],\n          isError: true,\n        };\n      }\n    },\n  );\n}\n","/**\n * Generic Adapter - Agent-agnostic optimization pipeline\n *\n * Orchestrates all 6 neuroscience modules to optimize context memory.\n */\n\nimport { randomUUID } from 'node:crypto';\nimport { createBTSPEmbedder } from '../core/btsp-embedder.js';\nimport { createConfidenceStates } from '../core/confidence-states.js';\nimport { createEngramScorer } from '../core/engram-scorer.js';\nimport type { KVMemory } from '../core/kv-memory.js';\nimport { createSparsePruner } from '../core/sparse-pruner.js';\nimport type { AgentAdapter, OptimizationResult, OptimizeOptions } from '../types/adapter.js';\nimport type { SparnConfig } from '../types/config.js';\nimport type { MemoryEntry } from '../types/memory.js';\nimport { hashContent } from '../utils/hash.js';\nimport { estimateTokens } from '../utils/tokenizer.js';\n\n/**\n * Create a generic adapter instance\n * @param memory - KV memory store\n * @param config - Sparn configuration\n * @returns AgentAdapter instance\n */\nexport function createGenericAdapter(memory: KVMemory, config: SparnConfig): AgentAdapter {\n  const pruner = createSparsePruner(config.pruning);\n  const scorer = createEngramScorer(config.decay);\n  const states = createConfidenceStates(config.states);\n  const btsp = createBTSPEmbedder();\n\n  async function optimize(\n    context: string,\n    options: OptimizeOptions = {},\n  ): Promise<OptimizationResult> {\n    const startTime = Date.now();\n\n    // Parse context into entries (line-based for simplicity)\n    const lines = context.split('\\n').filter((line) => line.trim().length > 0);\n    const entries: MemoryEntry[] = lines.map((content) => ({\n      id: randomUUID(),\n      content,\n      hash: hashContent(content),\n      timestamp: Date.now(),\n      score: btsp.detectBTSP(content) ? 1.0 : 0.5, // BTSP gets high initial score\n      ttl: config.decay.defaultTTL * 3600, // Convert hours to seconds\n      state: 'ready' as const,\n      accessCount: 0,\n      tags: [],\n      metadata: {},\n      isBTSP: btsp.detectBTSP(content),\n    }));\n\n    // Calculate original token count\n    const tokensBefore = entries.reduce((sum, e) => sum + estimateTokens(e.content), 0);\n\n    // Step 1: Update scores with decay\n    const scoredEntries = entries.map((entry) => ({\n      ...entry,\n      score: scorer.calculateScore(entry),\n    }));\n\n    // Step 2: Transition states based on scores\n    const statedEntries = scoredEntries.map((entry) => states.transition(entry));\n\n    // Step 3: Apply sparse pruning\n    const pruneResult = pruner.prune(statedEntries);\n\n    // Step 4: Keep active and ready entries, discard silent\n    const optimizedEntries = pruneResult.kept.filter(\n      (e) => e.state === 'active' || e.state === 'ready',\n    );\n\n    // Calculate final token count\n    const tokensAfter = optimizedEntries.reduce((sum, e) => sum + estimateTokens(e.content), 0);\n\n    // Reconstruct optimized context\n    const optimizedContext = optimizedEntries.map((e) => e.content).join('\\n');\n\n    // Store entries in memory (if not dry run)\n    if (!options.dryRun) {\n      for (const entry of optimizedEntries) {\n        await memory.put(entry);\n      }\n\n      // Record optimization statistics\n      await memory.recordOptimization({\n        timestamp: Date.now(),\n        tokens_before: tokensBefore,\n        tokens_after: tokensAfter,\n        entries_pruned: entries.length - optimizedEntries.length,\n        duration_ms: Date.now() - startTime,\n      });\n    }\n\n    // Get state distribution\n    const distribution = states.getDistribution(optimizedEntries);\n\n    const result: OptimizationResult = {\n      optimizedContext,\n      tokensBefore,\n      tokensAfter,\n      reduction: tokensBefore > 0 ? (tokensBefore - tokensAfter) / tokensBefore : 0,\n      entriesProcessed: entries.length,\n      entriesKept: optimizedEntries.length,\n      stateDistribution: distribution,\n      durationMs: Date.now() - startTime,\n    };\n\n    // Add verbose details if requested\n    if (options.verbose) {\n      result.details = optimizedEntries.map((e) => ({\n        id: e.id,\n        score: e.score,\n        state: e.state,\n        isBTSP: e.isBTSP,\n        tokens: estimateTokens(e.content),\n      }));\n    }\n\n    return result;\n  }\n\n  return {\n    optimize,\n  };\n}\n","/**\n * BTSP Embedder - Implements behavioral timescale synaptic plasticity\n *\n * Neuroscience: One-shot learning from critical events (errors, conflicts).\n * Application: Detect high-importance patterns and mark for permanent retention.\n */\n\nimport { randomUUID } from 'node:crypto';\nimport type { MemoryEntry } from '../types/memory.js';\nimport { hashContent } from '../utils/hash.js';\n\nexport interface BTSPEmbedder {\n  /**\n   * Detect if content contains BTSP patterns (errors, stack traces, conflicts, git diffs)\n   * @param content - Content to analyze\n   * @returns True if BTSP pattern detected\n   */\n  detectBTSP(content: string): boolean;\n\n  /**\n   * Create a new memory entry marked as BTSP (one-shot learned)\n   * @param content - Entry content\n   * @param tags - Optional tags\n   * @param metadata - Optional metadata\n   * @returns BTSP-marked memory entry\n   */\n  createBTSPEntry(\n    content: string,\n    tags?: string[],\n    metadata?: Record<string, unknown>,\n  ): MemoryEntry;\n}\n\n/**\n * Create a BTSP embedder instance\n * @returns BTSPEmbedder instance\n */\nexport function createBTSPEmbedder(): BTSPEmbedder {\n  // Patterns that indicate critical events\n  const BTSP_PATTERNS = [\n    // Error patterns\n    /\\b(error|exception|failure|fatal|critical|panic)\\b/i,\n    /\\b(TypeError|ReferenceError|SyntaxError|RangeError|URIError)\\b/,\n    /\\bENOENT|EACCES|ECONNREFUSED|ETIMEDOUT\\b/,\n\n    // Stack trace patterns\n    /^\\s+at\\s+.*\\(.*:\\d+:\\d+\\)/m, // JavaScript stack trace\n    /^\\s+at\\s+.*\\.[a-zA-Z]+:\\d+/m, // Python/Ruby stack trace\n\n    // Git diff new files\n    /^new file mode \\d+$/m,\n    /^--- \\/dev\\/null$/m,\n\n    // Merge conflict markers\n    /^<<<<<<< /m,\n    /^=======/m,\n    /^>>>>>>> /m,\n  ];\n\n  function detectBTSP(content: string): boolean {\n    return BTSP_PATTERNS.some((pattern) => pattern.test(content));\n  }\n\n  function createBTSPEntry(\n    content: string,\n    tags: string[] = [],\n    metadata: Record<string, unknown> = {},\n  ): MemoryEntry {\n    return {\n      id: randomUUID(),\n      content,\n      hash: hashContent(content),\n      timestamp: Date.now(),\n      score: 1.0, // Maximum initial score\n      ttl: 365 * 24 * 3600, // 1 year in seconds (long retention)\n      state: 'active', // Always active\n      accessCount: 0,\n      tags: [...tags, 'btsp'],\n      metadata,\n      isBTSP: true,\n    };\n  }\n\n  return {\n    detectBTSP,\n    createBTSPEntry,\n  };\n}\n","/**\n * Content hashing utilities.\n * Uses SHA-256 for deduplication.\n */\n\nimport { createHash } from 'node:crypto';\n\n/**\n * Generate SHA-256 hash of content for deduplication.\n *\n * @param content - Content to hash\n * @returns 64-character hex string (SHA-256)\n *\n * @example\n * ```typescript\n * const hash = hashContent('Hello world');\n * console.log(hash.length); // 64\n * ```\n */\nexport function hashContent(content: string): string {\n  return createHash('sha256').update(content, 'utf8').digest('hex');\n}\n","/**\n * Confidence States - Implements multi-state synapses\n *\n * Neuroscience: Synapses exist in three states: silent, ready (potentiated), active.\n * Application: Classify memory entries by score into silent/ready/active states.\n */\n\nimport type { ConfidenceState, MemoryEntry, StateDistribution } from '../types/memory.js';\n\nexport interface ConfidenceStatesConfig {\n  /** Score threshold for active state (e.g., 0.7) */\n  activeThreshold: number;\n  /** Score threshold for ready state (e.g., 0.3) */\n  readyThreshold: number;\n}\n\nexport interface ConfidenceStates {\n  /**\n   * Calculate state based on entry score and BTSP flag\n   * @param entry - Memory entry\n   * @returns Confidence state\n   */\n  calculateState(entry: MemoryEntry): ConfidenceState;\n\n  /**\n   * Transition entry to correct state based on its score\n   * @param entry - Entry to transition\n   * @returns Entry with updated state\n   */\n  transition(entry: MemoryEntry): MemoryEntry;\n\n  /**\n   * Get distribution of states across all entries\n   * @param entries - All memory entries\n   * @returns State distribution with counts\n   */\n  getDistribution(entries: MemoryEntry[]): StateDistribution;\n}\n\n/**\n * Create a confidence states manager\n * @param config - States configuration\n * @returns ConfidenceStates instance\n */\nexport function createConfidenceStates(config: ConfidenceStatesConfig): ConfidenceStates {\n  const { activeThreshold, readyThreshold } = config;\n\n  function calculateState(entry: MemoryEntry): ConfidenceState {\n    // BTSP entries are always active\n    if (entry.isBTSP) {\n      return 'active';\n    }\n\n    // State based on score thresholds\n    // Active: score > 0.7\n    if (entry.score > activeThreshold) {\n      return 'active';\n    }\n\n    // Ready: 0.3 <= score <= 0.7\n    if (entry.score >= readyThreshold) {\n      return 'ready';\n    }\n\n    // Silent: score < 0.3\n    return 'silent';\n  }\n\n  function transition(entry: MemoryEntry): MemoryEntry {\n    const newState = calculateState(entry);\n\n    return {\n      ...entry,\n      state: newState,\n    };\n  }\n\n  function getDistribution(entries: MemoryEntry[]): StateDistribution {\n    const distribution: StateDistribution = {\n      silent: 0,\n      ready: 0,\n      active: 0,\n      total: entries.length,\n    };\n\n    for (const entry of entries) {\n      const state = calculateState(entry);\n      distribution[state]++;\n    }\n\n    return distribution;\n  }\n\n  return {\n    calculateState,\n    transition,\n    getDistribution,\n  };\n}\n","/**\n * Engram Scorer - Implements engram theory (memory decay)\n *\n * Neuroscience: Memories fade over time without reinforcement.\n * Application: Apply exponential decay formula to memory scores based on age and access count.\n *\n * Formula: decay = 1 - e^(-age/TTL)\n * Score adjustment: score_new = score_old * (1 - decay) + (accessCount bonus)\n */\n\nimport type { MemoryEntry } from '../types/memory.js';\n\nexport interface EngramScorerConfig {\n  /** Default TTL in hours for new entries */\n  defaultTTL: number;\n  /** Decay threshold (0.0-1.0) above which entries are marked for pruning */\n  decayThreshold: number;\n}\n\nexport interface EngramScorer {\n  /**\n   * Calculate current score for an entry based on decay and access count\n   * @param entry - Memory entry to score\n   * @param currentTime - Current timestamp in milliseconds (for testing)\n   * @returns Updated score (0.0-1.0)\n   */\n  calculateScore(entry: MemoryEntry, currentTime?: number): number;\n\n  /**\n   * Refresh TTL to default value\n   * @param entry - Entry to refresh\n   * @returns Entry with refreshed TTL and timestamp\n   */\n  refreshTTL(entry: MemoryEntry): MemoryEntry;\n\n  /**\n   * Calculate decay factor (0.0-1.0) based on age and TTL\n   * @param ageInSeconds - Age of entry in seconds\n   * @param ttlInSeconds - TTL in seconds\n   * @returns Decay factor (0.0 = fresh, 1.0 = fully decayed)\n   */\n  calculateDecay(ageInSeconds: number, ttlInSeconds: number): number;\n}\n\n/**\n * Create an engram scorer instance\n * @param config - Scorer configuration\n * @returns EngramScorer instance\n */\nexport function createEngramScorer(config: EngramScorerConfig): EngramScorer {\n  const { defaultTTL } = config;\n\n  function calculateDecay(ageInSeconds: number, ttlInSeconds: number): number {\n    if (ttlInSeconds === 0) return 1.0; // Instant decay\n    if (ageInSeconds <= 0) return 0.0; // Fresh entry\n\n    // Exponential decay: 1 - e^(-age/TTL)\n    const ratio = ageInSeconds / ttlInSeconds;\n    const decay = 1 - Math.exp(-ratio);\n\n    // Clamp to [0.0, 1.0]\n    return Math.max(0, Math.min(1, decay));\n  }\n\n  function calculateScore(entry: MemoryEntry, currentTime: number = Date.now()): number {\n    // Calculate age in seconds\n    const ageInMilliseconds = currentTime - entry.timestamp;\n    const ageInSeconds = Math.max(0, ageInMilliseconds / 1000);\n\n    // Calculate decay factor\n    const decay = calculateDecay(ageInSeconds, entry.ttl);\n\n    // Base score reduced by decay\n    let score = entry.score * (1 - decay);\n\n    // Access count bonus (diminishing returns via log)\n    if (entry.accessCount > 0) {\n      const accessBonus = Math.log(entry.accessCount + 1) * 0.1;\n      score = Math.min(1.0, score + accessBonus);\n    }\n\n    // BTSP entries maintain high score\n    if (entry.isBTSP) {\n      score = Math.max(score, 0.9);\n    }\n\n    return Math.max(0, Math.min(1, score));\n  }\n\n  function refreshTTL(entry: MemoryEntry): MemoryEntry {\n    return {\n      ...entry,\n      ttl: defaultTTL * 3600, // Convert hours to seconds\n      timestamp: Date.now(),\n    };\n  }\n\n  return {\n    calculateScore,\n    refreshTTL,\n    calculateDecay,\n  };\n}\n","/**\n * Token estimation utilities.\n * Uses whitespace heuristic (~90% accuracy vs GPT tokenizer).\n */\n\n/**\n * Estimate token count for text using heuristic.\n *\n * Approximation: 1 token ≈ 4 chars or 0.75 words\n * Provides ~90% accuracy compared to GPT tokenizer, sufficient for optimization heuristics.\n *\n * @param text - Text to count\n * @returns Estimated token count\n *\n * @example\n * ```typescript\n * const tokens = estimateTokens('Hello world');\n * console.log(tokens); // ~2\n * ```\n */\nexport function estimateTokens(text: string): number {\n  if (!text || text.length === 0) {\n    return 0;\n  }\n\n  // Split on whitespace to get words\n  const words = text.split(/\\s+/).filter((w) => w.length > 0);\n  const wordCount = words.length;\n\n  // Character-based estimate\n  const charCount = text.length;\n  const charEstimate = Math.ceil(charCount / 4);\n\n  // Word-based estimate\n  const wordEstimate = Math.ceil(wordCount * 0.75);\n\n  // Return the maximum of both estimates (more conservative)\n  return Math.max(wordEstimate, charEstimate);\n}\n","/**\n * Sparse Pruner - Implements sparse coding principle\n *\n * Neuroscience: Only 2-5% of neurons fire at any given time.\n * Application: Keep only top 5% most relevant context entries by TF-IDF score.\n */\n\nimport type { MemoryEntry } from '../types/memory.js';\nimport type { PruneResult } from '../types/pruner.js';\nimport { estimateTokens } from '../utils/tokenizer.js';\n\nexport interface SparsePrunerConfig {\n  /** Percentage threshold for pruning (e.g., 5 = keep top 5%) */\n  threshold: number;\n}\n\nexport interface SparsePruner {\n  /**\n   * Prune entries to keep only top N% by relevance score\n   * @param entries - Memory entries to prune\n   * @returns Result with kept/removed entries and token counts\n   */\n  prune(entries: MemoryEntry[]): PruneResult;\n\n  /**\n   * Calculate TF-IDF relevance score for a single entry\n   * @param entry - Entry to score\n   * @param allEntries - All entries for IDF calculation\n   * @returns Relevance score (0.0-1.0)\n   */\n  scoreEntry(entry: MemoryEntry, allEntries: MemoryEntry[]): number;\n}\n\n/**\n * Create a sparse pruner instance\n * @param config - Pruner configuration\n * @returns SparsePruner instance\n */\nexport function createSparsePruner(config: SparsePrunerConfig): SparsePruner {\n  const { threshold } = config;\n\n  function tokenize(text: string): string[] {\n    return text\n      .toLowerCase()\n      .split(/\\s+/)\n      .filter((word) => word.length > 0);\n  }\n\n  function calculateTF(term: string, tokens: string[]): number {\n    const count = tokens.filter((t) => t === term).length;\n    // Sqrt capping to prevent common words from dominating\n    return Math.sqrt(count);\n  }\n\n  function calculateIDF(term: string, allEntries: MemoryEntry[]): number {\n    const totalDocs = allEntries.length;\n    const docsWithTerm = allEntries.filter((entry) => {\n      const tokens = tokenize(entry.content);\n      return tokens.includes(term);\n    }).length;\n\n    if (docsWithTerm === 0) return 0;\n\n    return Math.log(totalDocs / docsWithTerm);\n  }\n\n  function scoreEntry(entry: MemoryEntry, allEntries: MemoryEntry[]): number {\n    const tokens = tokenize(entry.content);\n    if (tokens.length === 0) return 0;\n\n    const uniqueTerms = [...new Set(tokens)];\n    let totalScore = 0;\n\n    for (const term of uniqueTerms) {\n      const tf = calculateTF(term, tokens);\n      const idf = calculateIDF(term, allEntries);\n      totalScore += tf * idf;\n    }\n\n    // Normalize by entry length\n    return totalScore / tokens.length;\n  }\n\n  function prune(entries: MemoryEntry[]): PruneResult {\n    if (entries.length === 0) {\n      return {\n        kept: [],\n        removed: [],\n        originalTokens: 0,\n        prunedTokens: 0,\n      };\n    }\n\n    // Calculate original token count\n    const originalTokens = entries.reduce((sum, e) => sum + estimateTokens(e.content), 0);\n\n    // Score all entries\n    const scored = entries.map((entry) => ({\n      entry,\n      score: scoreEntry(entry, entries),\n    }));\n\n    // Sort by score descending\n    scored.sort((a, b) => b.score - a.score);\n\n    // Keep top N% (minimum 1 entry)\n    const keepCount = Math.max(1, Math.ceil(entries.length * (threshold / 100)));\n    const kept = scored.slice(0, keepCount).map((s) => s.entry);\n    const removed = scored.slice(keepCount).map((s) => s.entry);\n\n    // Calculate pruned token count\n    const prunedTokens = kept.reduce((sum, e) => sum + estimateTokens(e.content), 0);\n\n    return {\n      kept,\n      removed,\n      originalTokens,\n      prunedTokens,\n    };\n  }\n\n  return {\n    prune,\n    scoreEntry,\n  };\n}\n","/**\n * Sleep Compressor - Implements sleep replay principle\n *\n * Neuroscience: During sleep, the brain consolidates memories by replaying important ones\n * and discarding irrelevant information.\n * Application: Periodic consolidation removes decayed entries and merges duplicates.\n */\n\nimport type { ConsolidateResult, DuplicateGroup } from '../types/consolidate.js';\nimport type { MemoryEntry } from '../types/memory.js';\nimport { createEngramScorer } from './engram-scorer.js';\n\nexport interface SleepCompressor {\n  /**\n   * Consolidate entries: remove decayed, merge duplicates\n   * @param entries - All memory entries\n   * @returns Consolidation result\n   */\n  consolidate(entries: MemoryEntry[]): ConsolidateResult;\n\n  /**\n   * Find duplicate entries (exact hash or near-duplicate by similarity)\n   * @param entries - Memory entries\n   * @returns Groups of duplicates\n   */\n  findDuplicates(entries: MemoryEntry[]): DuplicateGroup[];\n\n  /**\n   * Merge duplicate entries, keeping highest score\n   * @param groups - Duplicate groups\n   * @returns Merged entries\n   */\n  mergeDuplicates(groups: DuplicateGroup[]): MemoryEntry[];\n}\n\n/**\n * Create a sleep compressor instance\n * @returns SleepCompressor instance\n */\nexport function createSleepCompressor(): SleepCompressor {\n  const scorer = createEngramScorer({ defaultTTL: 24, decayThreshold: 0.95 });\n\n  function consolidate(entries: MemoryEntry[]): ConsolidateResult {\n    const startTime = Date.now();\n    const originalCount = entries.length;\n\n    // Step 1: Remove fully decayed entries (decay ≥ 0.95)\n    const now = Date.now();\n    const nonDecayed = entries.filter((entry) => {\n      const ageInSeconds = (now - entry.timestamp) / 1000;\n      const decay = scorer.calculateDecay(ageInSeconds, entry.ttl);\n      return decay < 0.95; // Keep entries with decay < 0.95\n    });\n\n    const decayedRemoved = originalCount - nonDecayed.length;\n\n    // Step 2: Find and merge duplicates\n    const duplicateGroups = findDuplicates(nonDecayed);\n    const merged = mergeDuplicates(duplicateGroups);\n\n    // Step 3: Keep non-duplicates\n    const duplicateIds = new Set(duplicateGroups.flatMap((g) => g.entries.map((e) => e.id)));\n    const nonDuplicates = nonDecayed.filter((e) => !duplicateIds.has(e.id));\n\n    // Combine merged duplicates with non-duplicates\n    const kept = [...merged, ...nonDuplicates];\n    const removed = entries.filter((e) => !kept.some((k) => k.id === e.id));\n\n    const duplicatesRemoved = duplicateGroups.reduce((sum, g) => sum + (g.entries.length - 1), 0);\n\n    return {\n      kept,\n      removed,\n      entriesBefore: originalCount,\n      entriesAfter: kept.length,\n      decayedRemoved,\n      duplicatesRemoved,\n      compressionRatio: originalCount > 0 ? kept.length / originalCount : 0,\n      durationMs: Date.now() - startTime,\n    };\n  }\n\n  function findDuplicates(entries: MemoryEntry[]): DuplicateGroup[] {\n    const groups: DuplicateGroup[] = [];\n    const processed = new Set<string>();\n\n    // Find exact hash matches\n    for (let i = 0; i < entries.length; i++) {\n      const entry = entries[i];\n      if (!entry || processed.has(entry.id)) continue;\n\n      const duplicates = entries.filter((e, idx) => idx !== i && e.hash === entry.hash);\n\n      if (duplicates.length > 0) {\n        const group: DuplicateGroup = {\n          entries: [entry, ...duplicates],\n          similarity: 1.0, // Exact match\n        };\n        groups.push(group);\n\n        // Mark as processed\n        processed.add(entry.id);\n        for (const dup of duplicates) {\n          processed.add(dup.id);\n        }\n      }\n    }\n\n    // Find near-duplicates (cosine similarity ≥ 0.85)\n    for (let i = 0; i < entries.length; i++) {\n      const entryI = entries[i];\n      if (!entryI || processed.has(entryI.id)) continue;\n\n      for (let j = i + 1; j < entries.length; j++) {\n        const entryJ = entries[j];\n        if (!entryJ || processed.has(entryJ.id)) continue;\n\n        const similarity = cosineSimilarity(entryI.content, entryJ.content);\n\n        if (similarity >= 0.85) {\n          const group: DuplicateGroup = {\n            entries: [entryI, entryJ],\n            similarity,\n          };\n          groups.push(group);\n\n          processed.add(entryI.id);\n          processed.add(entryJ.id);\n          break; // Move to next i\n        }\n      }\n    }\n\n    return groups;\n  }\n\n  function mergeDuplicates(groups: DuplicateGroup[]): MemoryEntry[] {\n    const merged: MemoryEntry[] = [];\n\n    for (const group of groups) {\n      // Keep entry with highest score\n      const sorted = [...group.entries].sort((a, b) => b.score - a.score);\n      const best = sorted[0];\n      if (!best) continue; // Skip empty groups\n\n      // Sum access counts\n      const totalAccessCount = group.entries.reduce((sum, e) => sum + e.accessCount, 0);\n\n      // Merge tags\n      const allTags = new Set(group.entries.flatMap((e) => e.tags));\n\n      merged.push({\n        ...best,\n        accessCount: totalAccessCount,\n        tags: Array.from(allTags),\n      });\n    }\n\n    return merged;\n  }\n\n  /**\n   * Calculate cosine similarity between two text strings\n   * @param text1 - First text\n   * @param text2 - Second text\n   * @returns Similarity score (0.0-1.0)\n   */\n  function cosineSimilarity(text1: string, text2: string): number {\n    const words1 = tokenize(text1);\n    const words2 = tokenize(text2);\n\n    // Build vocabulary\n    const vocab = new Set([...words1, ...words2]);\n\n    // Build word frequency vectors\n    const vec1: Record<string, number> = {};\n    const vec2: Record<string, number> = {};\n\n    for (const word of vocab) {\n      vec1[word] = words1.filter((w) => w === word).length;\n      vec2[word] = words2.filter((w) => w === word).length;\n    }\n\n    // Calculate dot product and magnitudes\n    let dotProduct = 0;\n    let mag1 = 0;\n    let mag2 = 0;\n\n    for (const word of vocab) {\n      const count1 = vec1[word] ?? 0;\n      const count2 = vec2[word] ?? 0;\n      dotProduct += count1 * count2;\n      mag1 += count1 * count1;\n      mag2 += count2 * count2;\n    }\n\n    mag1 = Math.sqrt(mag1);\n    mag2 = Math.sqrt(mag2);\n\n    if (mag1 === 0 || mag2 === 0) return 0;\n\n    return dotProduct / (mag1 * mag2);\n  }\n\n  function tokenize(text: string): string[] {\n    return text\n      .toLowerCase()\n      .split(/\\s+/)\n      .filter((word) => word.length > 0);\n  }\n\n  return {\n    consolidate,\n    findDuplicates,\n    mergeDuplicates,\n  };\n}\n","/**\n * Configuration types for Sparn behavior customization.\n */\n\n/**\n * Agent adapter type.\n */\nexport type AgentType = 'claude-code' | 'generic';\n\n/**\n * Pruning configuration.\n */\nexport interface PruningConfig {\n  /** Percentage of top-scored entries to keep (1-100, default: 5) */\n  threshold: number;\n\n  /** Aggressiveness scale 0-100 (affects TF-IDF weighting, default: 50) */\n  aggressiveness: number;\n}\n\n/**\n * Decay configuration.\n */\nexport interface DecayConfig {\n  /** Default TTL in hours (default: 24) */\n  defaultTTL: number;\n\n  /** Decay threshold for pruning (0.0-1.0, default: 0.95) */\n  decayThreshold: number;\n}\n\n/**\n * Confidence state threshold configuration.\n */\nexport interface StatesConfig {\n  /** Score threshold for active state (default: 0.7) */\n  activeThreshold: number;\n\n  /** Score threshold for ready state (default: 0.3) */\n  readyThreshold: number;\n}\n\n/**\n * UI configuration.\n */\nexport interface UIConfig {\n  /** Enable colored output (default: true) */\n  colors: boolean;\n\n  /** Enable sound effects (default: false) */\n  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+{"version":3,"sources":["../../src/mcp/index.ts","../../src/core/kv-memory.ts","../../src/mcp/server.ts","../../src/adapters/generic.ts","../../src/core/btsp-embedder.ts","../../src/utils/hash.ts","../../src/core/confidence-states.ts","../../src/core/engram-scorer.ts","../../src/utils/tokenizer.ts","../../src/core/sparse-pruner.ts","../../src/core/sleep-compressor.ts","../../src/types/config.ts"],"sourcesContent":["#!/usr/bin/env node\n\n/**\n * Sparn MCP Server Entry Point\n *\n * Starts the Sparn MCP server using stdio transport.\n * This is the main entry point for MCP client integrations\n * (Claude Desktop, VS Code, etc.).\n *\n * Usage:\n *   node dist/mcp/index.js\n *   node dist/mcp/index.cjs\n *\n * Environment variables:\n *   SPARN_DB_PATH - Custom path for the SQLite database (default: .sparn/memory.db)\n */\n\nimport { mkdirSync } from 'node:fs';\nimport { dirname, resolve } from 'node:path';\nimport { StdioServerTransport } from '@modelcontextprotocol/sdk/server/stdio.js';\nimport { createKVMemory } from '../core/kv-memory.js';\nimport { createSparnMcpServer } from './server.js';\n\nasync function main(): Promise<void> {\n  const dbPath = resolve(process.env['SPARN_DB_PATH'] ?? '.sparn/memory.db');\n\n  // Ensure the database directory exists\n  mkdirSync(dirname(dbPath), { recursive: true });\n\n  const memory = await createKVMemory(dbPath);\n\n  const server = createSparnMcpServer({ memory });\n\n  const transport = new StdioServerTransport();\n  await server.connect(transport);\n\n  // Log to stderr (stdout is reserved for MCP JSON-RPC messages)\n  console.error('Sparn MCP server running on stdio');\n\n  // Graceful shutdown\n  const shutdown = async () => {\n    console.error('Shutting down Sparn MCP server...');\n    await server.close();\n    await memory.close();\n    process.exit(0);\n  };\n\n  process.on('SIGINT', shutdown);\n  process.on('SIGTERM', shutdown);\n}\n\nmain().catch((error) => {\n  console.error('Fatal error in Sparn MCP server:', error);\n  process.exit(1);\n});\n","/**\n * KV Memory Store Module\n * Implements hippocampal key-value storage with dual index/value tables.\n * Maps to: Hippocampal Key-Value — the hippocampus separates what to store from how to retrieve it.\n */\n\nimport { copyFileSync, existsSync } from 'node:fs';\nimport Database from 'better-sqlite3';\nimport type { MemoryEntry, MemoryQueryFilters } from '../types/memory.js';\n\n/**\n * Optimization statistics record.\n */\nexport interface OptimizationStats {\n  id: number;\n  timestamp: number;\n  tokens_before: number;\n  tokens_after: number;\n  entries_pruned: number;\n  duration_ms: number;\n}\n\n/**\n * KV Memory interface.\n */\nexport interface KVMemory {\n  /** Store a memory entry */\n  put(entry: MemoryEntry): Promise<void>;\n\n  /** Retrieve a memory entry by ID */\n  get(id: string): Promise<MemoryEntry | null>;\n\n  /** Query entries by filters */\n  query(filters: MemoryQueryFilters): Promise<MemoryEntry[]>;\n\n  /** Delete a memory entry */\n  delete(id: string): Promise<void>;\n\n  /** List all entry IDs */\n  list(): Promise<string[]>;\n\n  /** Compact database (remove expired entries) */\n  compact(): Promise<number>;\n\n  /** Close database connection */\n  close(): Promise<void>;\n\n  /** Record optimization statistics */\n  recordOptimization(stats: Omit<OptimizationStats, 'id'>): Promise<void>;\n\n  /** Get all optimization statistics */\n  getOptimizationStats(): Promise<OptimizationStats[]>;\n\n  /** Clear all optimization statistics */\n  clearOptimizationStats(): Promise<void>;\n}\n\n/**\n * Create a timestamped backup of the database\n * @param dbPath - Path to database file\n * @returns Path to backup file\n */\nfunction createBackup(dbPath: string): string {\n  const timestamp = new Date().toISOString().replace(/[:.]/g, '-');\n  const backupPath = `${dbPath}.backup-${timestamp}`;\n\n  try {\n    copyFileSync(dbPath, backupPath);\n    console.log(`✓ Database backed up to: ${backupPath}`);\n    return backupPath;\n  } catch (error) {\n    console.error(`Warning: Could not create backup: ${error}`);\n    return '';\n  }\n}\n\n/**\n * Create KV Memory store with SQLite backend.\n *\n * Initializes database with dual table schema:\n * - entries_index: Fast lookups (id, hash, timestamp, score, ttl, state, accessCount, isBTSP)\n * - entries_value: Content storage (id, content, tags, metadata)\n *\n * @param dbPath - Path to SQLite database file\n * @returns KVMemory instance\n */\nexport async function createKVMemory(dbPath: string): Promise<KVMemory> {\n  // Detect database corruption and create backup\n  let db: Database.Database;\n  try {\n    db = new Database(dbPath);\n\n    // Quick integrity check\n    const integrityCheck = db.pragma('quick_check', { simple: true });\n    if (integrityCheck !== 'ok') {\n      console.error('⚠ Database corruption detected!');\n\n      // Create backup before attempting recovery\n      if (existsSync(dbPath)) {\n        const backupPath = createBackup(dbPath);\n        if (backupPath) {\n          console.log(`Backup created at: ${backupPath}`);\n        }\n      }\n\n      // Try to recover\n      console.log('Attempting database recovery...');\n      db.close();\n      db = new Database(dbPath);\n    }\n  } catch (error) {\n    console.error('⚠ Database error detected:', error);\n\n    // Create backup if database exists\n    if (existsSync(dbPath)) {\n      createBackup(dbPath);\n      console.log('Creating new database...');\n    }\n\n    db = new Database(dbPath);\n  }\n\n  // Enable WAL mode for better concurrency\n  db.pragma('journal_mode = WAL');\n\n  // Create entries_index table\n  db.exec(`\n    CREATE TABLE IF NOT EXISTS entries_index (\n      id TEXT PRIMARY KEY NOT NULL,\n      hash TEXT UNIQUE NOT NULL,\n      timestamp INTEGER NOT NULL,\n      score REAL NOT NULL DEFAULT 0.0 CHECK(score >= 0.0 AND score <= 1.0),\n      ttl INTEGER NOT NULL CHECK(ttl >= 0),\n      state TEXT NOT NULL CHECK(state IN ('silent', 'ready', 'active')),\n      accessCount INTEGER NOT NULL DEFAULT 0 CHECK(accessCount >= 0),\n      isBTSP INTEGER NOT NULL DEFAULT 0 CHECK(isBTSP IN (0, 1)),\n      created_at INTEGER NOT NULL DEFAULT (strftime('%s', 'now'))\n    );\n  `);\n\n  // Create entries_value table\n  db.exec(`\n    CREATE TABLE IF NOT EXISTS entries_value (\n      id TEXT PRIMARY KEY NOT NULL,\n      content TEXT NOT NULL,\n      tags TEXT,\n      metadata TEXT,\n      FOREIGN KEY (id) REFERENCES entries_index(id) ON DELETE CASCADE\n    );\n  `);\n\n  // Create optimization_stats table\n  db.exec(`\n    CREATE TABLE IF NOT EXISTS optimization_stats (\n      id INTEGER PRIMARY KEY AUTOINCREMENT,\n      timestamp INTEGER NOT NULL DEFAULT (strftime('%s', 'now')),\n      tokens_before INTEGER NOT NULL,\n      tokens_after INTEGER NOT NULL,\n      entries_pruned INTEGER NOT NULL,\n      duration_ms INTEGER NOT NULL\n    );\n  `);\n\n  // Create indexes\n  db.exec(`\n    CREATE INDEX IF NOT EXISTS idx_entries_state ON entries_index(state);\n    CREATE INDEX IF NOT EXISTS idx_entries_score ON entries_index(score DESC);\n    CREATE INDEX IF NOT EXISTS idx_entries_hash ON entries_index(hash);\n    CREATE INDEX IF NOT EXISTS idx_entries_timestamp ON entries_index(timestamp DESC);\n    CREATE INDEX IF NOT EXISTS idx_stats_timestamp ON optimization_stats(timestamp DESC);\n  `);\n\n  // Prepare statements for better performance\n  const putIndexStmt = db.prepare(`\n    INSERT OR REPLACE INTO entries_index\n    (id, hash, timestamp, score, ttl, state, accessCount, isBTSP)\n    VALUES (?, ?, ?, ?, ?, ?, ?, ?)\n  `);\n\n  const putValueStmt = db.prepare(`\n    INSERT OR REPLACE INTO entries_value\n    (id, content, tags, metadata)\n    VALUES (?, ?, ?, ?)\n  `);\n\n  const getStmt = db.prepare(`\n    SELECT\n      i.id, i.hash, i.timestamp, i.score, i.ttl, i.state, i.accessCount, i.isBTSP,\n      v.content, v.tags, v.metadata\n    FROM entries_index i\n    JOIN entries_value v ON i.id = v.id\n    WHERE i.id = ?\n  `);\n\n  const deleteIndexStmt = db.prepare('DELETE FROM entries_index WHERE id = ?');\n  const deleteValueStmt = db.prepare('DELETE FROM entries_value WHERE id = ?');\n\n  return {\n    async put(entry: MemoryEntry): Promise<void> {\n      const transaction = db.transaction(() => {\n        putIndexStmt.run(\n          entry.id,\n          entry.hash,\n          entry.timestamp,\n          entry.score,\n          entry.ttl,\n          entry.state,\n          entry.accessCount,\n          entry.isBTSP ? 1 : 0,\n        );\n\n        putValueStmt.run(\n          entry.id,\n          entry.content,\n          JSON.stringify(entry.tags),\n          JSON.stringify(entry.metadata),\n        );\n      });\n\n      transaction();\n    },\n\n    async get(id: string): Promise<MemoryEntry | null> {\n      const row = getStmt.get(id) as unknown;\n\n      if (!row) {\n        return null;\n      }\n\n      const r = row as {\n        id: string;\n        hash: string;\n        timestamp: number;\n        score: number;\n        ttl: number;\n        state: string;\n        accessCount: number;\n        isBTSP: number;\n        content: string;\n        tags: string | null;\n        metadata: string | null;\n      };\n\n      return {\n        id: r.id,\n        content: r.content,\n        hash: r.hash,\n        timestamp: r.timestamp,\n        score: r.score,\n        ttl: r.ttl,\n        state: r.state as 'silent' | 'ready' | 'active',\n        accessCount: r.accessCount,\n        tags: r.tags ? JSON.parse(r.tags) : [],\n        metadata: r.metadata ? JSON.parse(r.metadata) : {},\n        isBTSP: r.isBTSP === 1,\n      };\n    },\n\n    async query(filters: MemoryQueryFilters): Promise<MemoryEntry[]> {\n      let sql = `\n        SELECT\n          i.id, i.hash, i.timestamp, i.score, i.ttl, i.state, i.accessCount, i.isBTSP,\n          v.content, v.tags, v.metadata\n        FROM entries_index i\n        JOIN entries_value v ON i.id = v.id\n        WHERE 1=1\n      `;\n\n      const params: unknown[] = [];\n\n      if (filters.state) {\n        sql += ' AND i.state = ?';\n        params.push(filters.state);\n      }\n\n      if (filters.minScore !== undefined) {\n        sql += ' AND i.score >= ?';\n        params.push(filters.minScore);\n      }\n\n      if (filters.maxScore !== undefined) {\n        sql += ' AND i.score <= ?';\n        params.push(filters.maxScore);\n      }\n\n      if (filters.isBTSP !== undefined) {\n        sql += ' AND i.isBTSP = ?';\n        params.push(filters.isBTSP ? 1 : 0);\n      }\n\n      sql += ' ORDER BY i.score DESC';\n\n      if (filters.limit) {\n        sql += ' LIMIT ?';\n        params.push(filters.limit);\n      }\n\n      if (filters.offset) {\n        sql += ' OFFSET ?';\n        params.push(filters.offset);\n      }\n\n      const stmt = db.prepare(sql);\n      const rows = stmt.all(...params) as unknown[];\n\n      return rows.map((row) => {\n        const r = row as {\n          id: string;\n          hash: string;\n          timestamp: number;\n          score: number;\n          ttl: number;\n          state: string;\n          accessCount: number;\n          isBTSP: number;\n          content: string;\n          tags: string | null;\n          metadata: string | null;\n        };\n\n        return {\n          id: r.id,\n          content: r.content,\n          hash: r.hash,\n          timestamp: r.timestamp,\n          score: r.score,\n          ttl: r.ttl,\n          state: r.state as 'silent' | 'ready' | 'active',\n          accessCount: r.accessCount,\n          tags: r.tags ? JSON.parse(r.tags) : [],\n          metadata: r.metadata ? JSON.parse(r.metadata) : {},\n          isBTSP: r.isBTSP === 1,\n        };\n      });\n    },\n\n    async delete(id: string): Promise<void> {\n      const transaction = db.transaction(() => {\n        deleteIndexStmt.run(id);\n        deleteValueStmt.run(id);\n      });\n\n      transaction();\n    },\n\n    async list(): Promise<string[]> {\n      const stmt = db.prepare('SELECT id FROM entries_index');\n      const rows = stmt.all() as { id: string }[];\n      return rows.map((r) => r.id);\n    },\n\n    async compact(): Promise<number> {\n      const before = db.prepare('SELECT COUNT(*) as count FROM entries_index').get() as {\n        count: number;\n      };\n\n      // Remove fully decayed entries (this will be enhanced in sleep-compressor)\n      db.exec('DELETE FROM entries_index WHERE ttl <= 0');\n\n      db.exec('VACUUM');\n\n      const after = db.prepare('SELECT COUNT(*) as count FROM entries_index').get() as {\n        count: number;\n      };\n\n      return before.count - after.count;\n    },\n\n    async close(): Promise<void> {\n      db.close();\n    },\n\n    async recordOptimization(stats: Omit<OptimizationStats, 'id'>): Promise<void> {\n      const stmt = db.prepare(`\n        INSERT INTO optimization_stats (timestamp, tokens_before, tokens_after, entries_pruned, duration_ms)\n        VALUES (?, ?, ?, ?, ?)\n      `);\n\n      stmt.run(\n        stats.timestamp,\n        stats.tokens_before,\n        stats.tokens_after,\n        stats.entries_pruned,\n        stats.duration_ms,\n      );\n    },\n\n    async getOptimizationStats(): Promise<OptimizationStats[]> {\n      const stmt = db.prepare(`\n        SELECT id, timestamp, tokens_before, tokens_after, entries_pruned, duration_ms\n        FROM optimization_stats\n        ORDER BY timestamp DESC\n      `);\n\n      const rows = stmt.all() as OptimizationStats[];\n      return rows;\n    },\n\n    async clearOptimizationStats(): Promise<void> {\n      db.exec('DELETE FROM optimization_stats');\n    },\n  };\n}\n","/**\n * Sparn MCP Server - Model Context Protocol server implementation\n *\n * Exposes Sparn's neuroscience-inspired context optimization as MCP tools,\n * enabling integration with Claude Desktop, VS Code, and other MCP clients.\n *\n * Tools:\n * - sparn_optimize: Optimize context with configurable options\n * - sparn_stats: Get optimization statistics\n * - sparn_consolidate: Run memory consolidation (sleep replay)\n */\n\nimport { McpServer } from '@modelcontextprotocol/sdk/server/mcp.js';\nimport { z } from 'zod';\nimport { createGenericAdapter } from '../adapters/generic.js';\nimport type { KVMemory } from '../core/kv-memory.js';\nimport { createSleepCompressor } from '../core/sleep-compressor.js';\nimport type { SparnConfig } from '../types/config.js';\nimport { DEFAULT_CONFIG } from '../types/config.js';\n\n/**\n * Options for creating the Sparn MCP server.\n */\nexport interface SparnMcpServerOptions {\n  /** KV memory store instance */\n  memory: KVMemory;\n  /** Sparn configuration (defaults to DEFAULT_CONFIG) */\n  config?: SparnConfig;\n}\n\n/**\n * Create and configure the Sparn MCP server with all tools registered.\n *\n * @param options - Server options including memory store and config\n * @returns Configured McpServer instance ready to connect to a transport\n */\nexport function createSparnMcpServer(options: SparnMcpServerOptions): McpServer {\n  const { memory, config = DEFAULT_CONFIG } = options;\n\n  const server = new McpServer({\n    name: 'sparn',\n    version: '1.1.1',\n  });\n\n  registerOptimizeTool(server, memory, config);\n  registerStatsTool(server, memory);\n  registerConsolidateTool(server, memory);\n\n  return server;\n}\n\n/**\n * Register the sparn_optimize tool.\n *\n * Optimizes input context using the neuroscience-inspired pipeline:\n * BTSP detection, engram scoring, confidence states, and sparse pruning.\n */\nfunction registerOptimizeTool(server: McpServer, memory: KVMemory, config: SparnConfig): void {\n  server.registerTool(\n    'sparn_optimize',\n    {\n      title: 'Sparn Optimize',\n      description:\n        'Optimize context using neuroscience-inspired pruning. ' +\n        'Applies BTSP detection, engram scoring, confidence states, ' +\n        'and sparse pruning to reduce token usage while preserving important information.',\n      inputSchema: {\n        context: z.string().describe('The context text to optimize'),\n        dryRun: z\n          .boolean()\n          .optional()\n          .default(false)\n          .describe('If true, do not persist changes to the memory store'),\n        verbose: z\n          .boolean()\n          .optional()\n          .default(false)\n          .describe('If true, include per-entry details in the response'),\n        threshold: z\n          .number()\n          .min(0)\n          .max(100)\n          .optional()\n          .describe('Custom pruning threshold (1-100, overrides config)'),\n      },\n    },\n    async ({ context, dryRun, verbose, threshold }) => {\n      try {\n        const effectiveConfig = threshold\n          ? { ...config, pruning: { ...config.pruning, threshold } }\n          : config;\n\n        const adapter = createGenericAdapter(memory, effectiveConfig);\n        const result = await adapter.optimize(context, {\n          dryRun,\n          verbose,\n          threshold,\n        });\n\n        const response = {\n          optimizedContext: result.optimizedContext,\n          tokensBefore: result.tokensBefore,\n          tokensAfter: result.tokensAfter,\n          reduction: `${(result.reduction * 100).toFixed(1)}%`,\n          entriesProcessed: result.entriesProcessed,\n          entriesKept: result.entriesKept,\n          durationMs: result.durationMs,\n          stateDistribution: result.stateDistribution,\n          ...(verbose && result.details ? { details: result.details } : {}),\n        };\n\n        return {\n          content: [\n            {\n              type: 'text' as const,\n              text: JSON.stringify(response, null, 2),\n            },\n          ],\n        };\n      } catch (error) {\n        const message = error instanceof Error ? error.message : String(error);\n        return {\n          content: [\n            {\n              type: 'text' as const,\n              text: JSON.stringify({ error: message }),\n            },\n          ],\n          isError: true,\n        };\n      }\n    },\n  );\n}\n\n/**\n * Register the sparn_stats tool.\n *\n * Returns optimization statistics from the memory store, including\n * total commands run, tokens saved, and average reduction.\n */\nfunction registerStatsTool(server: McpServer, memory: KVMemory): void {\n  server.registerTool(\n    'sparn_stats',\n    {\n      title: 'Sparn Stats',\n      description:\n        'Get optimization statistics including total commands run, ' +\n        'tokens saved, and average reduction percentage.',\n      inputSchema: {\n        reset: z\n          .boolean()\n          .optional()\n          .default(false)\n          .describe('If true, reset all optimization statistics'),\n      },\n    },\n    async ({ reset }) => {\n      try {\n        if (reset) {\n          await memory.clearOptimizationStats();\n          return {\n            content: [\n              {\n                type: 'text' as const,\n                text: JSON.stringify(\n                  {\n                    message: 'Optimization statistics have been reset.',\n                    totalCommands: 0,\n                    totalTokensSaved: 0,\n                    averageReduction: '0.0%',\n                  },\n                  null,\n                  2,\n                ),\n              },\n            ],\n          };\n        }\n\n        const stats = await memory.getOptimizationStats();\n        const totalCommands = stats.length;\n\n        const totalTokensSaved = stats.reduce(\n          (sum, s) => sum + (s.tokens_before - s.tokens_after),\n          0,\n        );\n\n        const averageReduction =\n          totalCommands > 0\n            ? stats.reduce((sum, s) => {\n                const reduction =\n                  s.tokens_before > 0 ? (s.tokens_before - s.tokens_after) / s.tokens_before : 0;\n                return sum + reduction;\n              }, 0) / totalCommands\n            : 0;\n\n        const recentOptimizations = stats.slice(0, 10).map((s) => ({\n          timestamp: new Date(s.timestamp).toISOString(),\n          tokensBefore: s.tokens_before,\n          tokensAfter: s.tokens_after,\n          entriesPruned: s.entries_pruned,\n          durationMs: s.duration_ms,\n          reduction: `${(\n            ((s.tokens_before - s.tokens_after) / Math.max(s.tokens_before, 1)) * 100\n          ).toFixed(1)}%`,\n        }));\n\n        const response = {\n          totalCommands,\n          totalTokensSaved,\n          averageReduction: `${(averageReduction * 100).toFixed(1)}%`,\n          recentOptimizations,\n        };\n\n        return {\n          content: [\n            {\n              type: 'text' as const,\n              text: JSON.stringify(response, null, 2),\n            },\n          ],\n        };\n      } catch (error) {\n        const message = error instanceof Error ? error.message : String(error);\n        return {\n          content: [\n            {\n              type: 'text' as const,\n              text: JSON.stringify({ error: message }),\n            },\n          ],\n          isError: true,\n        };\n      }\n    },\n  );\n}\n\n/**\n * Register the sparn_consolidate tool.\n *\n * Runs the sleep-compressor consolidation process, which removes\n * decayed entries and merges duplicates in the memory store.\n */\nfunction registerConsolidateTool(server: McpServer, memory: KVMemory): void {\n  server.registerTool(\n    'sparn_consolidate',\n    {\n      title: 'Sparn Consolidate',\n      description:\n        'Run memory consolidation (sleep replay). ' +\n        'Removes decayed entries and merges duplicates to reclaim space. ' +\n        'Inspired by the neuroscience principle of sleep-based memory consolidation.',\n    },\n    async () => {\n      try {\n        const allIds = await memory.list();\n        const allEntries = await Promise.all(\n          allIds.map(async (id) => {\n            const entry = await memory.get(id);\n            return entry;\n          }),\n        );\n\n        const entries = allEntries.filter((e) => e !== null);\n\n        const compressor = createSleepCompressor();\n        const result = compressor.consolidate(entries);\n\n        // Apply changes to memory store\n        for (const removed of result.removed) {\n          await memory.delete(removed.id);\n        }\n\n        for (const kept of result.kept) {\n          await memory.put(kept);\n        }\n\n        // Run VACUUM to reclaim disk space\n        await memory.compact();\n\n        const response = {\n          entriesBefore: result.entriesBefore,\n          entriesAfter: result.entriesAfter,\n          decayedRemoved: result.decayedRemoved,\n          duplicatesRemoved: result.duplicatesRemoved,\n          compressionRatio: `${(result.compressionRatio * 100).toFixed(1)}%`,\n          durationMs: result.durationMs,\n          vacuumCompleted: true,\n        };\n\n        return {\n          content: [\n            {\n              type: 'text' as const,\n              text: JSON.stringify(response, null, 2),\n            },\n          ],\n        };\n      } catch (error) {\n        const message = error instanceof Error ? error.message : String(error);\n        return {\n          content: [\n            {\n              type: 'text' as const,\n              text: JSON.stringify({ error: message }),\n            },\n          ],\n          isError: true,\n        };\n      }\n    },\n  );\n}\n","/**\n * Generic Adapter - Agent-agnostic optimization pipeline\n *\n * Orchestrates all 6 neuroscience modules to optimize context memory.\n */\n\nimport { randomUUID } from 'node:crypto';\nimport { createBTSPEmbedder } from '../core/btsp-embedder.js';\nimport { createConfidenceStates } from '../core/confidence-states.js';\nimport { createEngramScorer } from '../core/engram-scorer.js';\nimport type { KVMemory } from '../core/kv-memory.js';\nimport { createSparsePruner } from '../core/sparse-pruner.js';\nimport type { AgentAdapter, OptimizationResult, OptimizeOptions } from '../types/adapter.js';\nimport type { SparnConfig } from '../types/config.js';\nimport type { MemoryEntry } from '../types/memory.js';\nimport { hashContent } from '../utils/hash.js';\nimport { estimateTokens } from '../utils/tokenizer.js';\n\n/**\n * Create a generic adapter instance\n * @param memory - KV memory store\n * @param config - Sparn configuration\n * @returns AgentAdapter instance\n */\nexport function createGenericAdapter(memory: KVMemory, config: SparnConfig): AgentAdapter {\n  const pruner = createSparsePruner(config.pruning);\n  const scorer = createEngramScorer(config.decay);\n  const states = createConfidenceStates(config.states);\n  const btsp = createBTSPEmbedder();\n\n  async function optimize(\n    context: string,\n    options: OptimizeOptions = {},\n  ): Promise<OptimizationResult> {\n    const startTime = Date.now();\n\n    // Parse context into entries (line-based for simplicity)\n    const lines = context.split('\\n').filter((line) => line.trim().length > 0);\n    const entries: MemoryEntry[] = lines.map((content) => ({\n      id: randomUUID(),\n      content,\n      hash: hashContent(content),\n      timestamp: Date.now(),\n      score: btsp.detectBTSP(content) ? 1.0 : 0.5, // BTSP gets high initial score\n      ttl: config.decay.defaultTTL * 3600, // Convert hours to seconds\n      state: 'ready' as const,\n      accessCount: 0,\n      tags: [],\n      metadata: {},\n      isBTSP: btsp.detectBTSP(content),\n    }));\n\n    // Calculate original token count\n    const tokensBefore = entries.reduce((sum, e) => sum + estimateTokens(e.content), 0);\n\n    // Step 1: Update scores with decay\n    const scoredEntries = entries.map((entry) => ({\n      ...entry,\n      score: scorer.calculateScore(entry),\n    }));\n\n    // Step 2: Transition states based on scores\n    const statedEntries = scoredEntries.map((entry) => states.transition(entry));\n\n    // Step 3: Apply sparse pruning\n    const pruneResult = pruner.prune(statedEntries);\n\n    // Step 4: Keep active and ready entries, discard silent\n    const optimizedEntries = pruneResult.kept.filter(\n      (e) => e.state === 'active' || e.state === 'ready',\n    );\n\n    // Calculate final token count\n    const tokensAfter = optimizedEntries.reduce((sum, e) => sum + estimateTokens(e.content), 0);\n\n    // Reconstruct optimized context\n    const optimizedContext = optimizedEntries.map((e) => e.content).join('\\n');\n\n    // Store entries in memory (if not dry run)\n    if (!options.dryRun) {\n      for (const entry of optimizedEntries) {\n        await memory.put(entry);\n      }\n\n      // Record optimization statistics\n      await memory.recordOptimization({\n        timestamp: Date.now(),\n        tokens_before: tokensBefore,\n        tokens_after: tokensAfter,\n        entries_pruned: entries.length - optimizedEntries.length,\n        duration_ms: Date.now() - startTime,\n      });\n    }\n\n    // Get state distribution\n    const distribution = states.getDistribution(optimizedEntries);\n\n    const result: OptimizationResult = {\n      optimizedContext,\n      tokensBefore,\n      tokensAfter,\n      reduction: tokensBefore > 0 ? (tokensBefore - tokensAfter) / tokensBefore : 0,\n      entriesProcessed: entries.length,\n      entriesKept: optimizedEntries.length,\n      stateDistribution: distribution,\n      durationMs: Date.now() - startTime,\n    };\n\n    // Add verbose details if requested\n    if (options.verbose) {\n      result.details = optimizedEntries.map((e) => ({\n        id: e.id,\n        score: e.score,\n        state: e.state,\n        isBTSP: e.isBTSP,\n        tokens: estimateTokens(e.content),\n      }));\n    }\n\n    return result;\n  }\n\n  return {\n    optimize,\n  };\n}\n","/**\n * BTSP Embedder - Implements behavioral timescale synaptic plasticity\n *\n * Neuroscience: One-shot learning from critical events (errors, conflicts).\n * Application: Detect high-importance patterns and mark for permanent retention.\n */\n\nimport { randomUUID } from 'node:crypto';\nimport type { MemoryEntry } from '../types/memory.js';\nimport { hashContent } from '../utils/hash.js';\n\nexport interface BTSPEmbedder {\n  /**\n   * Detect if content contains BTSP patterns (errors, stack traces, conflicts, git diffs)\n   * @param content - Content to analyze\n   * @returns True if BTSP pattern detected\n   */\n  detectBTSP(content: string): boolean;\n\n  /**\n   * Create a new memory entry marked as BTSP (one-shot learned)\n   * @param content - Entry content\n   * @param tags - Optional tags\n   * @param metadata - Optional metadata\n   * @returns BTSP-marked memory entry\n   */\n  createBTSPEntry(\n    content: string,\n    tags?: string[],\n    metadata?: Record<string, unknown>,\n  ): MemoryEntry;\n}\n\n/**\n * Create a BTSP embedder instance\n * @returns BTSPEmbedder instance\n */\nexport function createBTSPEmbedder(): BTSPEmbedder {\n  // Patterns that indicate critical events\n  const BTSP_PATTERNS = [\n    // Error patterns\n    /\\b(error|exception|failure|fatal|critical|panic)\\b/i,\n    /\\b(TypeError|ReferenceError|SyntaxError|RangeError|URIError)\\b/,\n    /\\bENOENT|EACCES|ECONNREFUSED|ETIMEDOUT\\b/,\n\n    // Stack trace patterns\n    /^\\s+at\\s+.*\\(.*:\\d+:\\d+\\)/m, // JavaScript stack trace\n    /^\\s+at\\s+.*\\.[a-zA-Z]+:\\d+/m, // Python/Ruby stack trace\n\n    // Git diff new files\n    /^new file mode \\d+$/m,\n    /^--- \\/dev\\/null$/m,\n\n    // Merge conflict markers\n    /^<<<<<<< /m,\n    /^=======/m,\n    /^>>>>>>> /m,\n  ];\n\n  function detectBTSP(content: string): boolean {\n    return BTSP_PATTERNS.some((pattern) => pattern.test(content));\n  }\n\n  function createBTSPEntry(\n    content: string,\n    tags: string[] = [],\n    metadata: Record<string, unknown> = {},\n  ): MemoryEntry {\n    return {\n      id: randomUUID(),\n      content,\n      hash: hashContent(content),\n      timestamp: Date.now(),\n      score: 1.0, // Maximum initial score\n      ttl: 365 * 24 * 3600, // 1 year in seconds (long retention)\n      state: 'active', // Always active\n      accessCount: 0,\n      tags: [...tags, 'btsp'],\n      metadata,\n      isBTSP: true,\n    };\n  }\n\n  return {\n    detectBTSP,\n    createBTSPEntry,\n  };\n}\n","/**\n * Content hashing utilities.\n * Uses SHA-256 for deduplication.\n */\n\nimport { createHash } from 'node:crypto';\n\n/**\n * Generate SHA-256 hash of content for deduplication.\n *\n * @param content - Content to hash\n * @returns 64-character hex string (SHA-256)\n *\n * @example\n * ```typescript\n * const hash = hashContent('Hello world');\n * console.log(hash.length); // 64\n * ```\n */\nexport function hashContent(content: string): string {\n  return createHash('sha256').update(content, 'utf8').digest('hex');\n}\n","/**\n * Confidence States - Implements multi-state synapses\n *\n * Neuroscience: Synapses exist in three states: silent, ready (potentiated), active.\n * Application: Classify memory entries by score into silent/ready/active states.\n */\n\nimport type { ConfidenceState, MemoryEntry, StateDistribution } from '../types/memory.js';\n\nexport interface ConfidenceStatesConfig {\n  /** Score threshold for active state (e.g., 0.7) */\n  activeThreshold: number;\n  /** Score threshold for ready state (e.g., 0.3) */\n  readyThreshold: number;\n}\n\nexport interface ConfidenceStates {\n  /**\n   * Calculate state based on entry score and BTSP flag\n   * @param entry - Memory entry\n   * @returns Confidence state\n   */\n  calculateState(entry: MemoryEntry): ConfidenceState;\n\n  /**\n   * Transition entry to correct state based on its score\n   * @param entry - Entry to transition\n   * @returns Entry with updated state\n   */\n  transition(entry: MemoryEntry): MemoryEntry;\n\n  /**\n   * Get distribution of states across all entries\n   * @param entries - All memory entries\n   * @returns State distribution with counts\n   */\n  getDistribution(entries: MemoryEntry[]): StateDistribution;\n}\n\n/**\n * Create a confidence states manager\n * @param config - States configuration\n * @returns ConfidenceStates instance\n */\nexport function createConfidenceStates(config: ConfidenceStatesConfig): ConfidenceStates {\n  const { activeThreshold, readyThreshold } = config;\n\n  function calculateState(entry: MemoryEntry): ConfidenceState {\n    // BTSP entries are always active\n    if (entry.isBTSP) {\n      return 'active';\n    }\n\n    // State based on score thresholds\n    // Active: score > 0.7\n    if (entry.score > activeThreshold) {\n      return 'active';\n    }\n\n    // Ready: 0.3 <= score <= 0.7\n    if (entry.score >= readyThreshold) {\n      return 'ready';\n    }\n\n    // Silent: score < 0.3\n    return 'silent';\n  }\n\n  function transition(entry: MemoryEntry): MemoryEntry {\n    const newState = calculateState(entry);\n\n    return {\n      ...entry,\n      state: newState,\n    };\n  }\n\n  function getDistribution(entries: MemoryEntry[]): StateDistribution {\n    const distribution: StateDistribution = {\n      silent: 0,\n      ready: 0,\n      active: 0,\n      total: entries.length,\n    };\n\n    for (const entry of entries) {\n      const state = calculateState(entry);\n      distribution[state]++;\n    }\n\n    return distribution;\n  }\n\n  return {\n    calculateState,\n    transition,\n    getDistribution,\n  };\n}\n","/**\n * Engram Scorer - Implements engram theory (memory decay)\n *\n * Neuroscience: Memories fade over time without reinforcement.\n * Application: Apply exponential decay formula to memory scores based on age and access count.\n *\n * Formula: decay = 1 - e^(-age/TTL)\n * Score adjustment: score_new = score_old * (1 - decay) + (accessCount bonus)\n */\n\nimport type { MemoryEntry } from '../types/memory.js';\n\nexport interface EngramScorerConfig {\n  /** Default TTL in hours for new entries */\n  defaultTTL: number;\n  /** Decay threshold (0.0-1.0) above which entries are marked for pruning */\n  decayThreshold: number;\n}\n\nexport interface EngramScorer {\n  /**\n   * Calculate current score for an entry based on decay and access count\n   * @param entry - Memory entry to score\n   * @param currentTime - Current timestamp in milliseconds (for testing)\n   * @returns Updated score (0.0-1.0)\n   */\n  calculateScore(entry: MemoryEntry, currentTime?: number): number;\n\n  /**\n   * Refresh TTL to default value\n   * @param entry - Entry to refresh\n   * @returns Entry with refreshed TTL and timestamp\n   */\n  refreshTTL(entry: MemoryEntry): MemoryEntry;\n\n  /**\n   * Calculate decay factor (0.0-1.0) based on age and TTL\n   * @param ageInSeconds - Age of entry in seconds\n   * @param ttlInSeconds - TTL in seconds\n   * @returns Decay factor (0.0 = fresh, 1.0 = fully decayed)\n   */\n  calculateDecay(ageInSeconds: number, ttlInSeconds: number): number;\n}\n\n/**\n * Create an engram scorer instance\n * @param config - Scorer configuration\n * @returns EngramScorer instance\n */\nexport function createEngramScorer(config: EngramScorerConfig): EngramScorer {\n  const { defaultTTL } = config;\n\n  function calculateDecay(ageInSeconds: number, ttlInSeconds: number): number {\n    if (ttlInSeconds === 0) return 1.0; // Instant decay\n    if (ageInSeconds <= 0) return 0.0; // Fresh entry\n\n    // Exponential decay: 1 - e^(-age/TTL)\n    const ratio = ageInSeconds / ttlInSeconds;\n    const decay = 1 - Math.exp(-ratio);\n\n    // Clamp to [0.0, 1.0]\n    return Math.max(0, Math.min(1, decay));\n  }\n\n  function calculateScore(entry: MemoryEntry, currentTime: number = Date.now()): number {\n    // Calculate age in seconds\n    const ageInMilliseconds = currentTime - entry.timestamp;\n    const ageInSeconds = Math.max(0, ageInMilliseconds / 1000);\n\n    // Calculate decay factor\n    const decay = calculateDecay(ageInSeconds, entry.ttl);\n\n    // Base score reduced by decay\n    let score = entry.score * (1 - decay);\n\n    // Access count bonus (diminishing returns via log)\n    if (entry.accessCount > 0) {\n      const accessBonus = Math.log(entry.accessCount + 1) * 0.1;\n      score = Math.min(1.0, score + accessBonus);\n    }\n\n    // BTSP entries maintain high score\n    if (entry.isBTSP) {\n      score = Math.max(score, 0.9);\n    }\n\n    return Math.max(0, Math.min(1, score));\n  }\n\n  function refreshTTL(entry: MemoryEntry): MemoryEntry {\n    return {\n      ...entry,\n      ttl: defaultTTL * 3600, // Convert hours to seconds\n      timestamp: Date.now(),\n    };\n  }\n\n  return {\n    calculateScore,\n    refreshTTL,\n    calculateDecay,\n  };\n}\n","/**\n * Token estimation utilities.\n * Uses whitespace heuristic (~90% accuracy vs GPT tokenizer).\n */\n\n/**\n * Estimate token count for text using heuristic.\n *\n * Approximation: 1 token ≈ 4 chars or 0.75 words\n * Provides ~90% accuracy compared to GPT tokenizer, sufficient for optimization heuristics.\n *\n * @param text - Text to count\n * @returns Estimated token count\n *\n * @example\n * ```typescript\n * const tokens = estimateTokens('Hello world');\n * console.log(tokens); // ~2\n * ```\n */\nexport function estimateTokens(text: string): number {\n  if (!text || text.length === 0) {\n    return 0;\n  }\n\n  // Split on whitespace to get words\n  const words = text.split(/\\s+/).filter((w) => w.length > 0);\n  const wordCount = words.length;\n\n  // Character-based estimate\n  const charCount = text.length;\n  const charEstimate = Math.ceil(charCount / 4);\n\n  // Word-based estimate\n  const wordEstimate = Math.ceil(wordCount * 0.75);\n\n  // Return the maximum of both estimates (more conservative)\n  return Math.max(wordEstimate, charEstimate);\n}\n","/**\n * Sparse Pruner - Implements sparse coding principle\n *\n * Neuroscience: Only 2-5% of neurons fire at any given time.\n * Application: Keep only top 5% most relevant context entries by TF-IDF score.\n */\n\nimport type { MemoryEntry } from '../types/memory.js';\nimport type { PruneResult } from '../types/pruner.js';\nimport { estimateTokens } from '../utils/tokenizer.js';\n\nexport interface SparsePrunerConfig {\n  /** Percentage threshold for pruning (e.g., 5 = keep top 5%) */\n  threshold: number;\n}\n\nexport interface SparsePruner {\n  /**\n   * Prune entries to keep only top N% by relevance score\n   * @param entries - Memory entries to prune\n   * @returns Result with kept/removed entries and token counts\n   */\n  prune(entries: MemoryEntry[]): PruneResult;\n\n  /**\n   * Calculate TF-IDF relevance score for a single entry\n   * @param entry - Entry to score\n   * @param allEntries - All entries for IDF calculation\n   * @returns Relevance score (0.0-1.0)\n   */\n  scoreEntry(entry: MemoryEntry, allEntries: MemoryEntry[]): number;\n}\n\n/**\n * Create a sparse pruner instance\n * @param config - Pruner configuration\n * @returns SparsePruner instance\n */\nexport function createSparsePruner(config: SparsePrunerConfig): SparsePruner {\n  const { threshold } = config;\n\n  function tokenize(text: string): string[] {\n    return text\n      .toLowerCase()\n      .split(/\\s+/)\n      .filter((word) => word.length > 0);\n  }\n\n  function calculateTF(term: string, tokens: string[]): number {\n    const count = tokens.filter((t) => t === term).length;\n    // Sqrt capping to prevent common words from dominating\n    return Math.sqrt(count);\n  }\n\n  function calculateIDF(term: string, allEntries: MemoryEntry[]): number {\n    const totalDocs = allEntries.length;\n    const docsWithTerm = allEntries.filter((entry) => {\n      const tokens = tokenize(entry.content);\n      return tokens.includes(term);\n    }).length;\n\n    if (docsWithTerm === 0) return 0;\n\n    return Math.log(totalDocs / docsWithTerm);\n  }\n\n  function scoreEntry(entry: MemoryEntry, allEntries: MemoryEntry[]): number {\n    const tokens = tokenize(entry.content);\n    if (tokens.length === 0) return 0;\n\n    const uniqueTerms = [...new Set(tokens)];\n    let totalScore = 0;\n\n    for (const term of uniqueTerms) {\n      const tf = calculateTF(term, tokens);\n      const idf = calculateIDF(term, allEntries);\n      totalScore += tf * idf;\n    }\n\n    // Normalize by entry length\n    return totalScore / tokens.length;\n  }\n\n  function prune(entries: MemoryEntry[]): PruneResult {\n    if (entries.length === 0) {\n      return {\n        kept: [],\n        removed: [],\n        originalTokens: 0,\n        prunedTokens: 0,\n      };\n    }\n\n    // Calculate original token count\n    const originalTokens = entries.reduce((sum, e) => sum + estimateTokens(e.content), 0);\n\n    // Score all entries\n    const scored = entries.map((entry) => ({\n      entry,\n      score: scoreEntry(entry, entries),\n    }));\n\n    // Sort by score descending\n    scored.sort((a, b) => b.score - a.score);\n\n    // Keep top N% (minimum 1 entry)\n    const keepCount = Math.max(1, Math.ceil(entries.length * (threshold / 100)));\n    const kept = scored.slice(0, keepCount).map((s) => s.entry);\n    const removed = scored.slice(keepCount).map((s) => s.entry);\n\n    // Calculate pruned token count\n    const prunedTokens = kept.reduce((sum, e) => sum + estimateTokens(e.content), 0);\n\n    return {\n      kept,\n      removed,\n      originalTokens,\n      prunedTokens,\n    };\n  }\n\n  return {\n    prune,\n    scoreEntry,\n  };\n}\n","/**\n * Sleep Compressor - Implements sleep replay principle\n *\n * Neuroscience: During sleep, the brain consolidates memories by replaying important ones\n * and discarding irrelevant information.\n * Application: Periodic consolidation removes decayed entries and merges duplicates.\n */\n\nimport type { ConsolidateResult, DuplicateGroup } from '../types/consolidate.js';\nimport type { MemoryEntry } from '../types/memory.js';\nimport { createEngramScorer } from './engram-scorer.js';\n\nexport interface SleepCompressor {\n  /**\n   * Consolidate entries: remove decayed, merge duplicates\n   * @param entries - All memory entries\n   * @returns Consolidation result\n   */\n  consolidate(entries: MemoryEntry[]): ConsolidateResult;\n\n  /**\n   * Find duplicate entries (exact hash or near-duplicate by similarity)\n   * @param entries - Memory entries\n   * @returns Groups of duplicates\n   */\n  findDuplicates(entries: MemoryEntry[]): DuplicateGroup[];\n\n  /**\n   * Merge duplicate entries, keeping highest score\n   * @param groups - Duplicate groups\n   * @returns Merged entries\n   */\n  mergeDuplicates(groups: DuplicateGroup[]): MemoryEntry[];\n}\n\n/**\n * Create a sleep compressor instance\n * @returns SleepCompressor instance\n */\nexport function createSleepCompressor(): SleepCompressor {\n  const scorer = createEngramScorer({ defaultTTL: 24, decayThreshold: 0.95 });\n\n  function consolidate(entries: MemoryEntry[]): ConsolidateResult {\n    const startTime = Date.now();\n    const originalCount = entries.length;\n\n    // Step 1: Remove fully decayed entries (decay ≥ 0.95)\n    const now = Date.now();\n    const nonDecayed = entries.filter((entry) => {\n      const ageInSeconds = (now - entry.timestamp) / 1000;\n      const decay = scorer.calculateDecay(ageInSeconds, entry.ttl);\n      return decay < 0.95; // Keep entries with decay < 0.95\n    });\n\n    const decayedRemoved = originalCount - nonDecayed.length;\n\n    // Step 2: Find and merge duplicates\n    const duplicateGroups = findDuplicates(nonDecayed);\n    const merged = mergeDuplicates(duplicateGroups);\n\n    // Step 3: Keep non-duplicates\n    const duplicateIds = new Set(duplicateGroups.flatMap((g) => g.entries.map((e) => e.id)));\n    const nonDuplicates = nonDecayed.filter((e) => !duplicateIds.has(e.id));\n\n    // Combine merged duplicates with non-duplicates\n    const kept = [...merged, ...nonDuplicates];\n    const removed = entries.filter((e) => !kept.some((k) => k.id === e.id));\n\n    const duplicatesRemoved = duplicateGroups.reduce((sum, g) => sum + (g.entries.length - 1), 0);\n\n    return {\n      kept,\n      removed,\n      entriesBefore: originalCount,\n      entriesAfter: kept.length,\n      decayedRemoved,\n      duplicatesRemoved,\n      compressionRatio: originalCount > 0 ? kept.length / originalCount : 0,\n      durationMs: Date.now() - startTime,\n    };\n  }\n\n  function findDuplicates(entries: MemoryEntry[]): DuplicateGroup[] {\n    const groups: DuplicateGroup[] = [];\n    const processed = new Set<string>();\n\n    // Find exact hash matches\n    for (let i = 0; i < entries.length; i++) {\n      const entry = entries[i];\n      if (!entry || processed.has(entry.id)) continue;\n\n      const duplicates = entries.filter((e, idx) => idx !== i && e.hash === entry.hash);\n\n      if (duplicates.length > 0) {\n        const group: DuplicateGroup = {\n          entries: [entry, ...duplicates],\n          similarity: 1.0, // Exact match\n        };\n        groups.push(group);\n\n        // Mark as processed\n        processed.add(entry.id);\n        for (const dup of duplicates) {\n          processed.add(dup.id);\n        }\n      }\n    }\n\n    // Find near-duplicates (cosine similarity ≥ 0.85)\n    for (let i = 0; i < entries.length; i++) {\n      const entryI = entries[i];\n      if (!entryI || processed.has(entryI.id)) continue;\n\n      for (let j = i + 1; j < entries.length; j++) {\n        const entryJ = entries[j];\n        if (!entryJ || processed.has(entryJ.id)) continue;\n\n        const similarity = cosineSimilarity(entryI.content, entryJ.content);\n\n        if (similarity >= 0.85) {\n          const group: DuplicateGroup = {\n            entries: [entryI, entryJ],\n            similarity,\n          };\n          groups.push(group);\n\n          processed.add(entryI.id);\n          processed.add(entryJ.id);\n          break; // Move to next i\n        }\n      }\n    }\n\n    return groups;\n  }\n\n  function mergeDuplicates(groups: DuplicateGroup[]): MemoryEntry[] {\n    const merged: MemoryEntry[] = [];\n\n    for (const group of groups) {\n      // Keep entry with highest score\n      const sorted = [...group.entries].sort((a, b) => b.score - a.score);\n      const best = sorted[0];\n      if (!best) continue; // Skip empty groups\n\n      // Sum access counts\n      const totalAccessCount = group.entries.reduce((sum, e) => sum + e.accessCount, 0);\n\n      // Merge tags\n      const allTags = new Set(group.entries.flatMap((e) => e.tags));\n\n      merged.push({\n        ...best,\n        accessCount: totalAccessCount,\n        tags: Array.from(allTags),\n      });\n    }\n\n    return merged;\n  }\n\n  /**\n   * Calculate cosine similarity between two text strings\n   * @param text1 - First text\n   * @param text2 - Second text\n   * @returns Similarity score (0.0-1.0)\n   */\n  function cosineSimilarity(text1: string, text2: string): number {\n    const words1 = tokenize(text1);\n    const words2 = tokenize(text2);\n\n    // Build vocabulary\n    const vocab = new Set([...words1, ...words2]);\n\n    // Build word frequency vectors\n    const vec1: Record<string, number> = {};\n    const vec2: Record<string, number> = {};\n\n    for (const word of vocab) {\n      vec1[word] = words1.filter((w) => w === word).length;\n      vec2[word] = words2.filter((w) => w === word).length;\n    }\n\n    // Calculate dot product and magnitudes\n    let dotProduct = 0;\n    let mag1 = 0;\n    let mag2 = 0;\n\n    for (const word of vocab) {\n      const count1 = vec1[word] ?? 0;\n      const count2 = vec2[word] ?? 0;\n      dotProduct += count1 * count2;\n      mag1 += count1 * count1;\n      mag2 += count2 * count2;\n    }\n\n    mag1 = Math.sqrt(mag1);\n    mag2 = Math.sqrt(mag2);\n\n    if (mag1 === 0 || mag2 === 0) return 0;\n\n    return dotProduct / (mag1 * mag2);\n  }\n\n  function tokenize(text: string): string[] {\n    return text\n      .toLowerCase()\n      .split(/\\s+/)\n      .filter((word) => word.length > 0);\n  }\n\n  return {\n    consolidate,\n    findDuplicates,\n    mergeDuplicates,\n  };\n}\n","/**\n * Configuration types for Sparn behavior customization.\n */\n\n/**\n * Agent adapter type.\n */\nexport type AgentType = 'claude-code' | 'generic';\n\n/**\n * Pruning configuration.\n */\nexport interface PruningConfig {\n  /** Percentage of top-scored entries to keep (1-100, default: 5) */\n  threshold: number;\n\n  /** Aggressiveness scale 0-100 (affects TF-IDF weighting, default: 50) */\n  aggressiveness: number;\n}\n\n/**\n * Decay configuration.\n */\nexport interface DecayConfig {\n  /** Default TTL in hours (default: 24) */\n  defaultTTL: number;\n\n  /** Decay threshold for pruning (0.0-1.0, default: 0.95) */\n  decayThreshold: number;\n}\n\n/**\n * Confidence state threshold configuration.\n */\nexport interface StatesConfig {\n  /** Score threshold for active state (default: 0.7) */\n  activeThreshold: number;\n\n  /** Score threshold for ready state (default: 0.3) */\n  readyThreshold: number;\n}\n\n/**\n * UI configuration.\n */\nexport interface UIConfig {\n  /** Enable colored output (default: true) */\n  colors: boolean;\n\n  /** Enable sound effects (default: false) */\n  sounds: boolean;\n\n  /** Verbose logging (default: false) */\n  verbose: boolean;\n}\n\n/**\n * Real-time optimization configuration.\n */\nexport interface RealtimeConfig {\n  /** Target token budget for optimized context (default: 50000) */\n  tokenBudget: number;\n\n  /** Token threshold that triggers auto-optimization (default: 60000) */\n  autoOptimizeThreshold: number;\n\n  /** File patterns to watch for changes (default: ['**\\/*.jsonl']) */\n  watchPatterns: string[];\n\n  /** Daemon PID file path (default: '.sparn/daemon.pid') */\n  pidFile: string;\n\n  /** Daemon log file path (default: '.sparn/daemon.log') */\n  logFile: string;\n\n  /** Debounce delay in milliseconds for file changes (default: 5000) */\n  debounceMs: number;\n\n  /** Enable incremental optimization (default: true) */\n  incremental: boolean;\n\n  /** Sliding window size for context entries (default: 500) */\n  windowSize: number;\n\n  /** Consolidation interval in hours, or null for disabled (default: null) */\n  consolidationInterval: number | null;\n}\n\n/**\n * Complete Sparn configuration.\n */\nexport interface SparnConfig {\n  pruning: PruningConfig;\n  decay: DecayConfig;\n  states: StatesConfig;\n  agent: AgentType;\n  ui: UIConfig;\n  /** Auto-consolidation interval in hours, or null for manual */\n  autoConsolidate: number | null;\n  /** Real-time optimization settings */\n  realtime: RealtimeConfig;\n}\n\n/**\n * Default configuration values.\n */\nexport const DEFAULT_CONFIG: SparnConfig = {\n  pruning: {\n    threshold: 5,\n    aggressiveness: 50,\n  },\n  decay: {\n    defaultTTL: 24,\n    decayThreshold: 0.95,\n  },\n  states: {\n    activeThreshold: 0.7,\n    readyThreshold: 0.3,\n  },\n  agent: 'generic',\n  ui: {\n    colors: true,\n    sounds: false,\n    verbose: false,\n  },\n  autoConsolidate: null,\n  realtime: {\n    tokenBudget: 40000,\n    autoOptimizeThreshold: 60000,\n    watchPatterns: ['**/*.jsonl'],\n    pidFile: '.sparn/daemon.pid',\n    logFile: '.sparn/daemon.log',\n    debounceMs: 5000,\n    incremental: true,\n    windowSize: 500,\n    consolidationInterval: null,\n  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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@ulrichc1/sparn",
-  "version": "1.2.1",
+  "version": "1.2.2",
   "type": "module",
   "description": "Neuroscience-inspired context optimization for AI coding agents",
   "main": "dist/index.cjs",