@tyvm/knowhow 0.0.32 → 0.0.33

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@tyvm/knowhow",
-  "version": "0.0.32",
+  "version": "0.0.33",
   "description": "ai cli with plugins and agents",
   "main": "ts_build/src/index.js",
   "bin": {

package/src/embeddings.ts

@@ -71,6 +71,46 @@ function getChunkId(id: string, index: number, chunkSize: number) {
   return chunkSize ? `${id}-${index}` : id;
 }
 
+function parseIdFromChunk(chunkName: string) {
+  const split = chunkName.split("-");
+  if (
+    split.length > 1 &&
+    Number.isInteger(parseInt(split[split.length - 1], 10))
+  ) {
+    // already has chunkId
+    return split.slice(0, -1).join("-");
+  }
+  return chunkName;
+}
+
+export async function detectDeletedEmbeddingFiles(
+  source: Config["embedSources"][0],
+  ignorePattern: string[],
+  embeddings: Embeddable[]
+) {
+  if (source.kind !== "file") {
+    return;
+  }
+  const inputs = (await glob.sync(source.input, {
+    ignore: ignorePattern,
+  })) as string[];
+
+  for (const embedding of embeddings) {
+    const id = parseIdFromChunk(embedding.id);
+    const dirName = path.dirname(id);
+    const exists = await fileExists(path.resolve(id));
+
+    const hasSomeFilesInDir = inputs.some((input) => input.startsWith(dirName));
+    if (hasSomeFilesInDir && !exists) {
+      console.log("Detected deleted embedding file", embedding.id);
+      const index = embeddings.findIndex((e) => e.id === embedding.id);
+      if (index !== -1) {
+        embeddings.splice(index, 1);
+      }
+    }
+  }
+}
+
 export async function embedSource(
   model: Config["embeddingModel"],
   source: Config["embedSources"][0],
@@ -97,10 +137,8 @@ export async function embedSource(
   }
 
   console.log(`Found ${inputs.length} files`);
-  if (inputs.length > 100) {
-    console.error(
-      "woah there, that's a lot of files. I'm not going to embed that many"
-    );
+  if (inputs.length > 1000) {
+    console.error("Large number of files detected. This may take a while");
   }
   console.log(inputs);
   const embeddings: Embeddable[] = await loadEmbedding(source.output);
@@ -108,18 +146,20 @@ export async function embedSource(
   let index = 0;
   for (const file of inputs) {
     index++;
-    const shouldSave = batch.length > 20 || index === inputs.length;
+    const shouldSave = batch.length > 20;
     if (shouldSave) {
       await Promise.all(batch);
+      await saveEmbedding(source.output, embeddings);
       batch = [];
     }
-    batch.push(embedKind(model, file, source, embeddings, shouldSave));
+    batch.push(embedKind(model, file, source, embeddings));
   }
   if (batch.length > 0) {
     await Promise.all(batch);
   }
 
   // Save one last time just in case
+  await detectDeletedEmbeddingFiles(source, ignorePattern, embeddings);
   await saveEmbedding(source.output, embeddings);
 }
 
@@ -165,9 +205,31 @@ export async function embed(
     }
 
     dontPrune.push(chunkId);
-    const alreadyEmbedded = embeddings.find(
-      (e) => e.id === chunkId && e.text === textOfChunk
-    );
+    const foundMany = embeddings.filter((e) => e.id === chunkId);
+    const found = foundMany.length > 0 ? foundMany[0] : null;
+    const alreadyEmbedded = found && found.text === textOfChunk;
+
+    if (foundMany.length > 1) {
+      // We have duplicates, so we need to remove them
+      console.log(`Removing ${foundMany.length} duplicates for`, chunkId);
+
+      let toDelete = embeddings.findIndex((e) => e.id === chunkId);
+      while (toDelete !== -1) {
+        // Keep removing until we find no more duplicates
+        embeddings.splice(toDelete, 1);
+        toDelete = embeddings.findIndex((e) => e.id === chunkId);
+      }
+
+      if (alreadyEmbedded) {
+        // Put back the exact match of the current chunk
+        // if this doesn't happen, we need to generate a new embedding
+        embeddings.push({
+          ...found,
+        });
+        updates.push(chunkId);
+      }
+    }
+
     if (alreadyEmbedded) {
       console.log("Skipping", chunkId);
       continue;
@@ -235,7 +297,7 @@ export async function embedJson(
   ) as Embeddable[];
 
   const embeddings: Embeddable[] = await loadEmbedding(output);
-  let updates = [];
+  const updates = [];
   let batch = [];
 
   for (const row of sourceJson) {
@@ -264,24 +326,17 @@ export async function embedJson(
       batch = [];
     }
     updates.push(...embedded);
-
-    if (updates.length > 20) {
-      await saveEmbedding(output, embeddings);
-      updates = [];
-    }
   }
 
   // save in case we missed some
   await Promise.all(batch);
-  await saveEmbedding(output, embeddings);
 }
 
 export async function embedKind(
   model: Config["embeddingModel"],
   id: string,
   source: Config["embedSources"][0],
-  embeddings = [] as Embeddable[],
-  save = true
+  embeddings = [] as Embeddable[]
 ) {
   const { prompt, output, uploadMode, chunkSize } = source;
 
@@ -312,10 +367,6 @@ export async function embedKind(
     );
     updates.push(...embedded);
   }
-
-  if (save && updates.length > 0) {
-    await saveEmbedding(output, embeddings);
-  }
 }
 
 async function handleFileKind(filePath: string) {
@@ -367,7 +418,12 @@ export async function handleAllKinds(
 
 export async function saveEmbedding(output: string, embeddings: Embeddable[]) {
   const fileString =
-    "[" + embeddings.map((e) => JSON.stringify(e)).join(",") + "]";
+    "[" +
+    embeddings
+      .sort((a, b) => (a.id < b.id ? -1 : 1))
+      .map((e) => JSON.stringify(e))
+      .join(",") +
+    "]";
   await writeFile(output, fileString);
 }
 

package/ts_build/src/embeddings.d.ts

@@ -6,11 +6,12 @@ export declare function getConfiguredEmbeddingMap(): Promise<{
     [filePath: string]: Embeddable<any>[];
 }>;
 export declare function getConfiguredEmbeddings(): Promise<Embeddable<any>[]>;
+export declare function detectDeletedEmbeddingFiles(source: Config["embedSources"][0], ignorePattern: string[], embeddings: Embeddable[]): Promise<void>;
 export declare function embedSource(model: Config["embeddingModel"], source: Config["embedSources"][0], ignorePattern: string[]): Promise<void>;
 export declare function embed(model: string, id: string, text: string, metadata: any, embeddings: Embeddable[], prompt?: string, chunkSize?: number, uploadMode?: boolean, minLength?: number): Promise<string[]>;
 export declare function isEmbeddingFile(inputFile: string): Promise<boolean>;
 export declare function embedJson(model: string, inputFile: string, source: Config["embedSources"][0]): Promise<void>;
-export declare function embedKind(model: Config["embeddingModel"], id: string, source: Config["embedSources"][0], embeddings?: Embeddable<any>[], save?: boolean): Promise<void>;
+export declare function embedKind(model: Config["embeddingModel"], id: string, source: Config["embedSources"][0], embeddings?: Embeddable<any>[]): Promise<void>;
 export declare function handleAllKinds(id: string, source: Config["embedSources"][0]): Promise<Partial<Embeddable>[]>;
 export declare function saveEmbedding(output: string, embeddings: Embeddable[]): Promise<void>;
 export declare function pruneEmbedding(id: string, chunkIds: string[], embeddings: Embeddable[]): Embeddable<any>[];

package/ts_build/src/embeddings.js

@@ -26,7 +26,7 @@ var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
 };
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.queryEmbedding = exports.pruneMetadata = exports.pruneVector = exports.pruneEmbedding = exports.saveEmbedding = exports.handleAllKinds = exports.embedKind = exports.embedJson = exports.isEmbeddingFile = exports.embed = exports.embedSource = exports.getConfiguredEmbeddings = exports.getConfiguredEmbeddingMap = exports.loadEmbedding = exports.cosineSimilarity = void 0;
+exports.queryEmbedding = exports.pruneMetadata = exports.pruneVector = exports.pruneEmbedding = exports.saveEmbedding = exports.handleAllKinds = exports.embedKind = exports.embedJson = exports.isEmbeddingFile = exports.embed = exports.embedSource = exports.detectDeletedEmbeddingFiles = exports.getConfiguredEmbeddings = exports.getConfiguredEmbeddingMap = exports.loadEmbedding = exports.cosineSimilarity = void 0;
 const glob_1 = __importDefault(require("glob"));
 const path = __importStar(require("path"));
 const config_1 = require("./config");
@@ -78,6 +78,36 @@ function getChunkId(id, index, chunkSize) {
     }
     return chunkSize ? `${id}-${index}` : id;
 }
+function parseIdFromChunk(chunkName) {
+    const split = chunkName.split("-");
+    if (split.length > 1 &&
+        Number.isInteger(parseInt(split[split.length - 1], 10))) {
+        return split.slice(0, -1).join("-");
+    }
+    return chunkName;
+}
+async function detectDeletedEmbeddingFiles(source, ignorePattern, embeddings) {
+    if (source.kind !== "file") {
+        return;
+    }
+    const inputs = (await glob_1.default.sync(source.input, {
+        ignore: ignorePattern,
+    }));
+    for (const embedding of embeddings) {
+        const id = parseIdFromChunk(embedding.id);
+        const dirName = path.dirname(id);
+        const exists = await (0, utils_1.fileExists)(path.resolve(id));
+        const hasSomeFilesInDir = inputs.some((input) => input.startsWith(dirName));
+        if (hasSomeFilesInDir && !exists) {
+            console.log("Detected deleted embedding file", embedding.id);
+            const index = embeddings.findIndex((e) => e.id === embedding.id);
+            if (index !== -1) {
+                embeddings.splice(index, 1);
+            }
+        }
+    }
+}
+exports.detectDeletedEmbeddingFiles = detectDeletedEmbeddingFiles;
 async function embedSource(model, source, ignorePattern) {
     if (!source.input) {
         console.log("Skipping", source.output, "with blank input property");
@@ -93,8 +123,8 @@ async function embedSource(model, source, ignorePattern) {
         inputs = [source.input];
     }
     console.log(`Found ${inputs.length} files`);
-    if (inputs.length > 100) {
-        console.error("woah there, that's a lot of files. I'm not going to embed that many");
+    if (inputs.length > 1000) {
+        console.error("Large number of files detected. This may take a while");
     }
     console.log(inputs);
     const embeddings = await loadEmbedding(source.output);
@@ -102,16 +132,18 @@ async function embedSource(model, source, ignorePattern) {
     let index = 0;
     for (const file of inputs) {
         index++;
-        const shouldSave = batch.length > 20 || index === inputs.length;
+        const shouldSave = batch.length > 20;
         if (shouldSave) {
             await Promise.all(batch);
+            await saveEmbedding(source.output, embeddings);
             batch = [];
         }
-        batch.push(embedKind(model, file, source, embeddings, shouldSave));
+        batch.push(embedKind(model, file, source, embeddings));
     }
     if (batch.length > 0) {
         await Promise.all(batch);
     }
+    await detectDeletedEmbeddingFiles(source, ignorePattern, embeddings);
     await saveEmbedding(source.output, embeddings);
 }
 exports.embedSource = embedSource;
@@ -139,7 +171,23 @@ async function embed(model, id, text, metadata, embeddings, prompt, chunkSize, u
             continue;
         }
         dontPrune.push(chunkId);
-        const alreadyEmbedded = embeddings.find((e) => e.id === chunkId && e.text === textOfChunk);
+        const foundMany = embeddings.filter((e) => e.id === chunkId);
+        const found = foundMany.length > 0 ? foundMany[0] : null;
+        const alreadyEmbedded = found && found.text === textOfChunk;
+        if (foundMany.length > 1) {
+            console.log(`Removing ${foundMany.length} duplicates for`, chunkId);
+            let toDelete = embeddings.findIndex((e) => e.id === chunkId);
+            while (toDelete !== -1) {
+                embeddings.splice(toDelete, 1);
+                toDelete = embeddings.findIndex((e) => e.id === chunkId);
+            }
+            if (alreadyEmbedded) {
+                embeddings.push({
+                    ...found,
+                });
+                updates.push(chunkId);
+            }
+        }
         if (alreadyEmbedded) {
             console.log("Skipping", chunkId);
             continue;
@@ -187,7 +235,7 @@ async function embedJson(model, inputFile, source) {
     const filePath = path.join(__dirname, inputFile);
     const sourceJson = JSON.parse(await (0, utils_1.readFile)(inputFile, "utf8"));
     const embeddings = await loadEmbedding(output);
-    let updates = [];
+    const updates = [];
     let batch = [];
     for (const row of sourceJson) {
         if (embeddings.find((e) => e.id === row.id)) {
@@ -201,16 +249,11 @@ async function embedJson(model, inputFile, source) {
             batch = [];
         }
         updates.push(...embedded);
-        if (updates.length > 20) {
-            await saveEmbedding(output, embeddings);
-            updates = [];
-        }
     }
     await Promise.all(batch);
-    await saveEmbedding(output, embeddings);
 }
 exports.embedJson = embedJson;
-async function embedKind(model, id, source, embeddings = [], save = true) {
+async function embedKind(model, id, source, embeddings = []) {
     const { prompt, output, uploadMode, chunkSize } = source;
     const stat = !source.kind && (await (0, utils_1.fileStat)(id));
     if (stat && stat.isDirectory()) {
@@ -227,9 +270,6 @@ async function embedKind(model, id, source, embeddings = [], save = true) {
         const embedded = await embed(model, rowId, text, metadata, embeddings, prompt, chunkSize, uploadMode);
         updates.push(...embedded);
     }
-    if (save && updates.length > 0) {
-        await saveEmbedding(output, embeddings);
-    }
 }
 exports.embedKind = embedKind;
 async function handleFileKind(filePath) {
@@ -274,7 +314,12 @@ async function handleAllKinds(id, source) {
 }
 exports.handleAllKinds = handleAllKinds;
 async function saveEmbedding(output, embeddings) {
-    const fileString = "[" + embeddings.map((e) => JSON.stringify(e)).join(",") + "]";
+    const fileString = "[" +
+        embeddings
+            .sort((a, b) => (a.id < b.id ? -1 : 1))
+            .map((e) => JSON.stringify(e))
+            .join(",") +
+        "]";
     await (0, utils_1.writeFile)(output, fileString);
 }
 exports.saveEmbedding = saveEmbedding;

package/ts_build/src/embeddings.js.map

@@ -1 +1 @@
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