@turf/quadrat-analysis 7.2.0 → 7.3.1

package/dist/cjs/index.cjs

@@ -106,9 +106,9 @@ function factorial(num) {
   }
   return inner(num);
 }
-var turf_quadrat_analysis_default = quadratAnalysis;
+var index_default = quadratAnalysis;
 
 
 
-exports.default = turf_quadrat_analysis_default; exports.quadratAnalysis = quadratAnalysis;
+exports.default = index_default; exports.quadratAnalysis = quadratAnalysis;
 //# sourceMappingURL=index.cjs.map

package/dist/cjs/index.cjs.map

@@ -1 +1 @@
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for 0 feature occuring,\n * 1 feature occuring, 2 features, and so on,\n * and lists these probabilities in the frequency table.\n * By comparing the two frequency tables, you can see whether the features create a pattern.\n * If the table for the observed distribution has more quadrats containing many features than the\n * table for the random distribution dose, then the features create a clustered pattern.\n *\n * It is hard to judge the frequency tables are similar or different just by looking at them.\n * So, we can use serval statistical tests to find out how much the frequency tables differ.\n * We use Kolmogorov-Smirnov test.This method calculates cumulative probabilities for both distributions,\n * and then compares the cumulative probabilities at each class level and selects the largest absolute difference D.\n * Then, the test compares D to the critical value for a confidence level you specify.\n * If D is greater than the critical value, the difference between  the observed distribution and\n * the random distribution is significant. The greater the value the bigger the difference.\n *\n * Traditionally, squares are used for the shape of the quadrats, in a regular grid(square-grid).\n * Some researchers suggest that the quadrat size equal twice the size of mean area per feature,\n * which is simply the area of the study area divided by the number of features.\n *\n *\n * @function\n * @param {FeatureCollection<Point>} pointFeatureSet point set to study\n * @param {Object} [options={}] optional parameters\n * @param {[number, number, number, number]} [options.studyBbox] bbox representing the study area\n * @param {20 | 15 | 10 | 5 | 2 | 1} [options.confidenceLevel=20] a confidence level.\n * The unit is percentage . 5 means 95%, value must be in {@link K_TABLE}\n * @returns {QuadratAnalysisResult} result\n * @example\n *\n * var bbox = [-65, 40, -63, 42];\n * var dataset = turf.randomPoint(100, { bbox: bbox });\n * var result = turf.quadratAnalysis(dataset);\n *\n */\nfunction quadratAnalysis(\n  pointFeatureSet: FeatureCollection<Point>,\n  options: {\n    studyBbox?: [number, number, number, number];\n    confidenceLevel?: 20 | 15 | 10 | 5 | 2 | 1;\n  }\n): QuadratAnalysisResult {\n  options = options || {};\n  const studyBbox = options.studyBbox || turfBBox(pointFeatureSet);\n  const confidenceLevel = options.confidenceLevel || 20;\n  const points = pointFeatureSet.features;\n\n  // create square-grid\n  const numOfPoints = points.length;\n  const sizeOfArea = area(bboxPolygon(studyBbox));\n  const lengthOfSide = Math.sqrt((sizeOfArea / numOfPoints) * 2);\n  const grid = squareGrid(studyBbox, lengthOfSide, {\n    units: \"meters\",\n  });\n  const quadrats = grid.features;\n\n  // count the number of features in each quadrat\n  const quadratIdDict: { [key: string]: { box: BBox; cnt: number } } = {};\n  for (let i = 0; i < quadrats.length; i++) {\n    quadratIdDict[i] = {\n      box: turfBBox(quadrats[i]),\n      cnt: 0,\n    };\n  }\n\n  let sumOfPoint = 0;\n  for (const pt of points) {\n    for (const key of Object.keys(quadratIdDict)) {\n      const box = quadratIdDict[key].box;\n      if (inBBox(getCoord(pt), box)) {\n        quadratIdDict[key].cnt += 1;\n        sumOfPoint += 1;\n        break;\n      }\n    }\n  }\n\n  // the most amount of features in quadrat\n  let maxCnt = 0;\n  for (const key of Object.keys(quadratIdDict)) {\n    const cnt = quadratIdDict[key].cnt;\n    if (cnt > maxCnt) {\n      maxCnt = cnt;\n    }\n  }\n\n  const expectedDistribution = [];\n  const numOfQuadrat = Object.keys(quadratIdDict).length;\n  const lambda = sumOfPoint / numOfQuadrat;\n\n  // get the cumulative probability of the random distribution\n  let cumulativeProbility = 0.0;\n  for (let x = 0; x < maxCnt + 1; x++) {\n    cumulativeProbility +=\n      (Math.exp(-lambda) * Math.pow(lambda, x)) / factorial(x);\n    expectedDistribution.push(cumulativeProbility);\n  }\n\n  // get the cumulative probability of the observed distribution\n  const observedDistribution = [];\n  let cumulativeObservedQuads = 0;\n  for (let x = 0; x < maxCnt + 1; x++) {\n    for (const key of Object.keys(quadratIdDict)) {\n      if (quadratIdDict[key].cnt === x) {\n        cumulativeObservedQuads += 1;\n      }\n    }\n    const p = cumulativeObservedQuads / numOfQuadrat;\n    observedDistribution.push(p);\n  }\n\n  // get the largest absolute difference between two distributions\n  let maxDifference = 0;\n  for (let x = 0; x < maxCnt + 1; x++) {\n    const difference = Math.abs(\n      expectedDistribution[x] - observedDistribution[x]\n    );\n    if (difference > maxDifference) {\n      maxDifference = difference;\n    }\n  }\n\n  const k = K_TABLE[confidenceLevel];\n\n  // statistical test\n  const criticalValue = k / Math.sqrt(numOfQuadrat);\n  const result: QuadratAnalysisResult = {\n    criticalValue,\n    isRandom: true,\n    maxAbsoluteDifference: maxDifference,\n    observedDistribution,\n  };\n\n  if (maxDifference > criticalValue) {\n    result.isRandom = false;\n  }\n\n  return result;\n}\n\n/**\n * the confidence level\n *\n * @constant\n * @type {Object}\n * @property {number} 20 1.07275\n * @property {number} 15 1.13795\n * @property {number} 10 1.22385\n * @property {number} 5 1.3581\n * @property {number} 2 1.51743\n * @property {number} 1 1.62762\n */\nconst K_TABLE = {\n  20: 1.07275,\n  15: 1.13795,\n  10: 1.22385,\n  5: 1.3581,\n  2: 1.51743,\n  1: 1.62762,\n};\n\n/**\n * the return type of the quadratAnalysis\n *\n * @typedef {object} QuadratAnalysisResult\n * @property {number} criticalValue\n * @property {number} maxAbsoluteDifference\n * @property {boolean} isRandom\n * @property {Array<number>} observedDistribution the cumulative distribution of observed features,\n * the index represents the number of features in the quadrat.\n */\n\n/**\n * inBBox from @turf/boolean-point-in-polygon\n *\n * @private\n * @param {Array<number>} pt point [x,y]\n * @param {BBox} bbox BBox [west, south, east, north]\n * @returns {boolean} true/false if point is inside BBox\n */\nfunction inBBox(pt: number[], bbox: BBox) {\n  return (\n    bbox[0] <= pt[0] && bbox[1] <= pt[1] && bbox[2] >= pt[0] && bbox[3] >= pt[1]\n  );\n}\n\n/**\n * https://stackoverflow.com/questions/3959211/fast-factorial-function-in-javascript\n * @private\n * @param {number} num Number\n * @returns {number} the factorial of num\n */\nfunction factorial(num: number) {\n  const f: number[] = [];\n  function inner(n: number): number {\n    if (n === 0 || n === 1) {\n      return 1;\n    }\n    if (f[n] > 0) {\n      return f[n];\n    }\n    return (f[n] = inner(n - 1) * n);\n  }\n  return inner(num);\n}\n\nexport { QuadratAnalysisResult, quadratAnalysis };\nexport default quadratAnalysis;\n"]}
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distribution and\n * the random distribution is significant. The greater the value the bigger the difference.\n *\n * Traditionally, squares are used for the shape of the quadrats, in a regular grid(square-grid).\n * Some researchers suggest that the quadrat size equal twice the size of mean area per feature,\n * which is simply the area of the study area divided by the number of features.\n *\n *\n * @function\n * @param {FeatureCollection<Point>} pointFeatureSet point set to study\n * @param {Object} [options={}] optional parameters\n * @param {[number, number, number, number]} [options.studyBbox] bbox representing the study area\n * @param {20 | 15 | 10 | 5 | 2 | 1} [options.confidenceLevel=20] a confidence level.\n * The unit is percentage . 5 means 95%, value must be in {@link K_TABLE}\n * @returns {QuadratAnalysisResult} result\n * @example\n *\n * var bbox = [-65, 40, -63, 42];\n * var dataset = turf.randomPoint(100, { bbox: bbox });\n * var result = turf.quadratAnalysis(dataset);\n *\n */\nfunction quadratAnalysis(\n  pointFeatureSet: FeatureCollection<Point>,\n  options: {\n    studyBbox?: [number, number, number, number];\n    confidenceLevel?: 20 | 15 | 10 | 5 | 2 | 1;\n  }\n): QuadratAnalysisResult {\n  options = options || {};\n  const studyBbox = options.studyBbox || turfBBox(pointFeatureSet);\n  const confidenceLevel = options.confidenceLevel || 20;\n  const points = pointFeatureSet.features;\n\n  // create square-grid\n  const numOfPoints = points.length;\n  const sizeOfArea = area(bboxPolygon(studyBbox));\n  const lengthOfSide = Math.sqrt((sizeOfArea / numOfPoints) * 2);\n  const grid = squareGrid(studyBbox, lengthOfSide, {\n    units: \"meters\",\n  });\n  const quadrats = grid.features;\n\n  // count the number of features in each quadrat\n  const quadratIdDict: { [key: string]: { box: BBox; cnt: number } } = {};\n  for (let i = 0; i < quadrats.length; i++) {\n    quadratIdDict[i] = {\n      box: turfBBox(quadrats[i]),\n      cnt: 0,\n    };\n  }\n\n  let sumOfPoint = 0;\n  for (const pt of points) {\n    for (const key of Object.keys(quadratIdDict)) {\n      const box = quadratIdDict[key].box;\n      if (inBBox(getCoord(pt), box)) {\n        quadratIdDict[key].cnt += 1;\n        sumOfPoint += 1;\n        break;\n      }\n    }\n  }\n\n  // the most amount of features in quadrat\n  let maxCnt = 0;\n  for (const key of Object.keys(quadratIdDict)) {\n    const cnt = quadratIdDict[key].cnt;\n    if (cnt > maxCnt) {\n      maxCnt = cnt;\n    }\n  }\n\n  const expectedDistribution = [];\n  const numOfQuadrat = Object.keys(quadratIdDict).length;\n  const lambda = sumOfPoint / numOfQuadrat;\n\n  // get the cumulative probability of the random distribution\n  let cumulativeProbility = 0.0;\n  for (let x = 0; x < maxCnt + 1; x++) {\n    cumulativeProbility +=\n      (Math.exp(-lambda) * Math.pow(lambda, x)) / factorial(x);\n    expectedDistribution.push(cumulativeProbility);\n  }\n\n  // get the cumulative probability of the observed distribution\n  const observedDistribution = [];\n  let cumulativeObservedQuads = 0;\n  for (let x = 0; x < maxCnt + 1; x++) {\n    for (const key of Object.keys(quadratIdDict)) {\n      if (quadratIdDict[key].cnt === x) {\n        cumulativeObservedQuads += 1;\n      }\n    }\n    const p = cumulativeObservedQuads / numOfQuadrat;\n    observedDistribution.push(p);\n  }\n\n  // get the largest absolute difference between two distributions\n  let maxDifference = 0;\n  for (let x = 0; x < maxCnt + 1; x++) {\n    const difference = Math.abs(\n      expectedDistribution[x] - observedDistribution[x]\n    );\n    if (difference > maxDifference) {\n      maxDifference = difference;\n    }\n  }\n\n  const k = K_TABLE[confidenceLevel];\n\n  // statistical test\n  const criticalValue = k / Math.sqrt(numOfQuadrat);\n  const result: QuadratAnalysisResult = {\n    criticalValue,\n    isRandom: true,\n    maxAbsoluteDifference: maxDifference,\n    observedDistribution,\n  };\n\n  if (maxDifference > criticalValue) {\n    result.isRandom = false;\n  }\n\n  return result;\n}\n\n/**\n * the confidence level\n *\n * @constant\n * @type {Object}\n * @property {number} 20 1.07275\n * @property {number} 15 1.13795\n * @property {number} 10 1.22385\n * @property {number} 5 1.3581\n * @property {number} 2 1.51743\n * @property {number} 1 1.62762\n */\nconst K_TABLE = {\n  20: 1.07275,\n  15: 1.13795,\n  10: 1.22385,\n  5: 1.3581,\n  2: 1.51743,\n  1: 1.62762,\n};\n\n/**\n * the return type of the quadratAnalysis\n *\n * @typedef {object} QuadratAnalysisResult\n * @property {number} criticalValue\n * @property {number} maxAbsoluteDifference\n * @property {boolean} isRandom\n * @property {Array<number>} observedDistribution the cumulative distribution of observed features,\n * the index represents the number of features in the quadrat.\n */\n\n/**\n * inBBox from @turf/boolean-point-in-polygon\n *\n * @private\n * @param {Array<number>} pt point [x,y]\n * @param {BBox} bbox BBox [west, south, east, north]\n * @returns {boolean} true/false if point is inside BBox\n */\nfunction inBBox(pt: number[], bbox: BBox) {\n  return (\n    bbox[0] <= pt[0] && bbox[1] <= pt[1] && bbox[2] >= pt[0] && bbox[3] >= pt[1]\n  );\n}\n\n/**\n * https://stackoverflow.com/questions/3959211/fast-factorial-function-in-javascript\n * @private\n * @param {number} num Number\n * @returns {number} the factorial of num\n */\nfunction factorial(num: number) {\n  const f: number[] = [];\n  function inner(n: number): number {\n    if (n === 0 || n === 1) {\n      return 1;\n    }\n    if (f[n] > 0) {\n      return f[n];\n    }\n    return (f[n] = inner(n - 1) * n);\n  }\n  return inner(num);\n}\n\nexport { QuadratAnalysisResult, quadratAnalysis };\nexport default quadratAnalysis;\n"]}

package/dist/esm/index.js

@@ -106,9 +106,9 @@ function factorial(num) {
   }
   return inner(num);
 }
-var turf_quadrat_analysis_default = quadratAnalysis;
+var index_default = quadratAnalysis;
 export {
-  turf_quadrat_analysis_default as default,
+  index_default as default,
   quadratAnalysis
 };
 //# sourceMappingURL=index.js.map

package/dist/esm/index.js.map

@@ -1 +1 @@
-{"version":3,"sources":["../../index.ts"],"sourcesContent":["import { BBox, FeatureCollection, Point } from \"geojson\";\nimport { area } from \"@turf/area\";\nimport { bbox as turfBBox } from \"@turf/bbox\";\nimport { bboxPolygon } from \"@turf/bbox-polygon\";\nimport { getCoord } from \"@turf/invariant\";\nimport { squareGrid } from \"@turf/square-grid\";\n\ninterface QuadratAnalysisResult {\n  criticalValue: number;\n  maxAbsoluteDifference: number;\n  isRandom: boolean;\n  observedDistribution: number[];\n}\n\n/**\n * Quadrat analysis lays a set of equal-size areas(quadrat) over the study area and counts\n * the number of features in each quadrat and creates a frequency table.\n * The table lists the number of quadrats containing no features,\n * the number containing one feature, two features, and so on,\n * all the way up to the quadrat containing the most features.\n * The method then creates the frequency table for the random distribution, usually based on a Poisson distribution.\n * The method uses the distribution to calculate the probability for 0 feature occuring,\n * 1 feature occuring, 2 features, and so on,\n * and lists these probabilities in the frequency table.\n * By comparing the two frequency tables, you can see whether the features create a pattern.\n * If the table for the observed distribution has more quadrats containing many features than the\n * table for the random distribution dose, then the features create a clustered pattern.\n *\n * It is hard to judge the frequency tables are similar or different just by looking at them.\n * So, we can use serval statistical tests to find out how much the frequency tables differ.\n * We use Kolmogorov-Smirnov test.This method calculates cumulative probabilities for both distributions,\n * and then compares the cumulative probabilities at each class level and selects the largest absolute difference D.\n * Then, the test compares D to the critical value for a confidence level you specify.\n * If D is greater than the critical value, the difference between  the observed distribution and\n * the random distribution is significant. 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+{"version":3,"sources":["../../index.ts"],"sourcesContent":["import { BBox, FeatureCollection, Point } from \"geojson\";\nimport { area } from \"@turf/area\";\nimport { bbox as turfBBox } from \"@turf/bbox\";\nimport { bboxPolygon } from \"@turf/bbox-polygon\";\nimport { getCoord } from \"@turf/invariant\";\nimport { squareGrid } from \"@turf/square-grid\";\n\ninterface QuadratAnalysisResult {\n  criticalValue: number;\n  maxAbsoluteDifference: number;\n  isRandom: boolean;\n  observedDistribution: number[];\n}\n\n/**\n * Quadrat analysis lays a set of equal-size areas(quadrat) over the study area and counts\n * the number of features in each quadrat and creates a frequency table.\n * The table lists the number of quadrats containing no features,\n * the number containing one feature, two features, and so on,\n * all the way up to the quadrat containing the most features.\n * The method then creates the frequency table for the random distribution, usually based on a Poisson distribution.\n * The method uses the distribution to calculate the probability for 0 feature occuring,\n * 1 feature occuring, 2 features, and so on,\n * and lists these probabilities in the frequency table.\n * By comparing the two frequency tables, you can see whether the features create a pattern.\n * If the table for the observed distribution has more quadrats containing many features than the\n * table for the random distribution dose, then the features create a clustered pattern.\n *\n * It is hard to judge the frequency tables are similar or different just by looking at them.\n * So, we can use serval statistical tests to find out how much the frequency tables differ.\n * We use Kolmogorov-Smirnov test.This method calculates cumulative probabilities for both distributions,\n * and then compares the cumulative probabilities at each class level and selects the largest absolute difference D.\n * Then, the test compares D to the critical value for a confidence level you specify.\n * If D is greater than the critical value, the difference between  the observed distribution and\n * the random distribution is significant. 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package/package.json

@@ -1,7 +1,7 @@
 {
   "name": "@turf/quadrat-analysis",
-  "version": "7.2.0",
-  "description": "turf quadrat-analysis module",
+  "version": "7.3.1",
+  "description": "Quadrat analysis lays a set of equal-size areas(quadrat) over the study area and counts the number of features in each quadrat and creates a frequency table.",
   "author": "Turf Authors",
   "contributors": [
     "Haoming Zhuang <@zhuang-hao-ming>"
@@ -48,34 +48,33 @@
     "bench": "tsx bench.ts",
     "build": "tsup --config ../../tsup.config.ts",
     "docs": "tsx ../../scripts/generate-readmes.ts",
-    "test": "npm-run-all --npm-path npm test:*",
+    "test": "pnpm run /test:.*/",
     "test:tape": "tsx test.ts"
   },
   "devDependencies": {
-    "@turf/nearest-neighbor-analysis": "^7.2.0",
+    "@turf/nearest-neighbor-analysis": "7.3.1",
     "@types/benchmark": "^2.1.5",
-    "@types/tape": "^4.13.4",
+    "@types/tape": "^5.8.1",
     "benchmark": "^2.1.4",
     "load-json-file": "^7.0.1",
-    "npm-run-all": "^4.1.5",
     "tape": "^5.9.0",
-    "tsup": "^8.3.5",
-    "tsx": "^4.19.2",
-    "typescript": "^5.5.4",
-    "write-json-file": "^5.0.0"
+    "tsup": "^8.4.0",
+    "tsx": "^4.19.4",
+    "typescript": "^5.8.3",
+    "write-json-file": "^6.0.0"
   },
   "dependencies": {
-    "@turf/area": "^7.2.0",
-    "@turf/bbox": "^7.2.0",
-    "@turf/bbox-polygon": "^7.2.0",
-    "@turf/centroid": "^7.2.0",
-    "@turf/helpers": "^7.2.0",
-    "@turf/invariant": "^7.2.0",
-    "@turf/point-grid": "^7.2.0",
-    "@turf/random": "^7.2.0",
-    "@turf/square-grid": "^7.2.0",
+    "@turf/area": "7.3.1",
+    "@turf/bbox": "7.3.1",
+    "@turf/bbox-polygon": "7.3.1",
+    "@turf/centroid": "7.3.1",
+    "@turf/helpers": "7.3.1",
+    "@turf/invariant": "7.3.1",
+    "@turf/point-grid": "7.3.1",
+    "@turf/random": "7.3.1",
+    "@turf/square-grid": "7.3.1",
     "@types/geojson": "^7946.0.10",
     "tslib": "^2.8.1"
   },
-  "gitHead": "7b0f0374c4668cd569f8904c71e2ae7d941be867"
+  "gitHead": "b7f1b4eafb760431e03955499d8eac9489438219"
 }