@trohde/earos 1.2.0 → 1.3.1

package/assets/init/docs/solutions/security-issues/cli-comprehensive-code-review-security-perf-architecture.md

@@ -0,0 +1,210 @@
+---
+title: "EaROS CLI comprehensive code review: 28 findings across security, performance, architecture, type safety, agent parity"
+category: security-issues
+date: 2026-03-23
+tags:
+  - code-review
+  - path-traversal
+  - typescript-strict-mode
+  - dead-code-removal
+  - performance-optimization
+  - cli-architecture
+  - express-server
+  - agent-parity
+  - type-safety
+  - earos-cli
+severity: high
+component:
+  - tools/editor/src/serve.ts
+  - tools/editor/bin.js
+  - tools/editor/src/init.ts
+  - tools/editor/src/export-docx.ts
+  - tools/editor/manifest-cli.mjs
+  - tools/editor/src/utils/validate.ts
+  - tools/editor/src/utils/export-markdown.ts
+  - tools/editor/src/components/AssessmentSummary.tsx
+  - tools/editor/package.json
+  - tools/editor/tsconfig.server.json
+root_cause_type: accumulated-tech-debt
+resolution_type: multi-phase-refactor
+---
+
+# EaROS CLI Comprehensive Code Review — 28 Findings
+
+## Problem
+
+A 6-agent code review of the EaROS CLI (`tools/editor/`, ~3300 lines TypeScript/JavaScript) identified 28 findings across security, performance, architecture, type safety, agent parity, and code simplification. The CLI had grown organically with no prior comprehensive review, accumulating technical debt across multiple concern areas.
+
+**Key symptoms:**
+- Path traversal bypass in `safeRepoPath()` — `startsWith` without trailing separator allowed access to sibling directories
+- Express server bound to `0.0.0.0`, exposing file read/write API to the local network
+- Dead TypeScript source files (`cli.ts`, `manifest-cli.ts`) that were never compiled, creating contributor confusion
+- CLI export command hardcoded to artifact kind only — rubrics and evaluations rejected
+- No structured JSON output for any CLI command, blocking agent/CI integration
+- Sequential icon downloads in `earos init --icons` (3 cloud packages one-at-a-time)
+- `strict: false` in TypeScript configs with 49+ `any` usages
+- Silent validation bypass — schema compilation failure returned `valid: true`
+
+## Root Cause
+
+Six independent root causes identified:
+
+1. **Security:** `safeRepoPath` used `abs.startsWith(repoRoot)` without appending a path separator. On a system where `repoRoot = /projects/EAROS`, the path `/projects/EAROS-evil/secret.yaml` would pass the check. The server's `app.listen(port)` call omitted the host parameter, defaulting to `0.0.0.0`. The `resolveLocalMermaidImage` function had no containment check for `..` segments after the `/icons/` prefix.
+
+2. **Dead code:** `src/cli.ts` (78 lines) was described as a "TypeScript source reference for bin.js" but was never in any `tsconfig.json` files array. It had diverged from `bin.js` (missing `init`, `export`, `manifest`, `dev` commands). Similarly, `manifest-cli.ts` existed alongside `manifest-cli.mjs` but was never compiled.
+
+3. **Agent parity:** The `earos export` command checked `if (artifactData?.kind !== 'artifact')` and rejected all other kinds. No `--json` flag existed on any command.
+
+4. **Performance:** The `for (const config of ICON_PACKAGES)` loop in `init.ts` awaited each download sequentially. The `createIconAliases` function used `.sort()[0]` (O(n log n)) instead of a linear max-scan (O(n)).
+
+5. **Type safety:** Both `tsconfig.json` and `tsconfig.server.json` had `strict: false`. The `getGateSeverity` function was duplicated in `AssessmentSummary.tsx` and `score-helpers.tsx`.
+
+6. **Silent fail-open:** In `validate.ts`, when `ajv.compile(schema)` threw an error, the catch block returned `null`, and the caller treated `null` as "valid" — meaning a broken schema silently validated everything.
+
+## Solution
+
+Implemented across 5 phases, published as `@trohde/earos@1.3.0`.
+
+### Phase 1 — Security Hardening
+
+**Path traversal fix** (the most critical finding):
+
+```typescript
+// BEFORE (vulnerable)
+function safeRepoPath(repoRoot: string, rawPath: string): string | null {
+  const decoded = decodeURIComponent(rawPath)
+  const abs = resolve(repoRoot, decoded)
+  if (!abs.startsWith(repoRoot)) return null  // EAROS-evil passes!
+  return abs
+}
+
+// AFTER (fixed)
+import { sep } from 'path'
+
+function safeRepoPath(repoRoot: string, rawPath: string): string | null {
+  const decoded = decodeURIComponent(rawPath)
+  const abs = resolve(repoRoot, decoded)
+  if (abs !== repoRoot && !abs.startsWith(repoRoot + sep)) return null
+  return abs
+}
+```
+
+**Other security fixes:**
+- Bound Express to `127.0.0.1` with `EAROS_HOST` env var override for Docker/WSL2
+- Added `X-Content-Type-Options: nosniff` and `X-Frame-Options: DENY` headers
+- Sanitized 500 error responses — no more filesystem path leaks
+- Scoped body limits: 1MB default, 5MB for file writes, 25MB for exports
+- Restricted `POST /api/file/*` to `.yaml`/`.yml` extensions only
+- Added containment check to `resolveLocalMermaidImage` with `baseDir + sep`
+
+### Phase 2 — Dead Code Removal
+
+- Deleted `src/cli.ts` (78 lines)
+- Deleted `manifest-cli.ts` (diverged from `manifest-cli.mjs`)
+- Updated `manifest-cli.mjs` header comment
+
+### Phase 3 — Agent Parity
+
+- Extended `earos export` to handle `artifact`, `evaluation`, `core_rubric`, `profile`, and `overlay` kinds
+- Added `--format md` for Markdown export (artifact and rubric)
+- Added `--json` flag to `earos validate` and `earos manifest check`
+- Added `earos manifest list [--json]` command
+- Added `earos list evaluations [--json]` command
+
+### Phase 4 — Performance
+
+```typescript
+// BEFORE: sequential icon downloads
+for (const config of ICON_PACKAGES) {
+  const result = await downloadIconPackage(target, config)
+}
+
+// AFTER: parallel with Promise.allSettled
+const settled = await Promise.allSettled(
+  ICON_PACKAGES.map(config => downloadIconPackage(target, config))
+)
+```
+
+- Replaced `sort()[0]` with linear max-scan in alias matching
+- Lazy-loaded `ARTIFACT_SCHEMA` via `getArtifactSchema()` function
+
+### Phase 5 — Code Quality
+
+- Enabled `strict: true` in `tsconfig.server.json` (compiled with zero errors)
+- De-duplicated `getGateSeverity` — `AssessmentSummary.tsx` now imports from `score-helpers.tsx`
+- Moved `mermaid` from `dependencies` to `devDependencies` (Vite bundles it into dist/)
+- Fixed silent validation bypass to fail-closed:
+  ```typescript
+  // BEFORE: catch returns null → caller treats as valid
+  } catch { return null }
+
+  // AFTER: catch returns a validator that always fails
+  } catch (e) {
+    console.warn('[validate] Schema compilation failed:', e)
+    const failValidator = Object.assign(
+      () => false,
+      { errors: [{ instancePath: '', message: 'Schema compilation failed' }] }
+    ) as unknown as ReturnType<typeof ajv.compile>
+    cache.set(key, failValidator)
+    return failValidator
+  }
+  ```
+- Added 5-second TTL cache for evaluation file endpoint scans
+
+## Verification Steps
+
+1. **Build:** `npm run build` completed with zero errors under `strict: true`
+2. **CLI commands:** Tested `earos validate` (human + `--json`), `earos export` (all 3 kinds + `--format md`), `earos manifest check --json`, `earos manifest list`, `earos list evaluations --json`
+3. **Browser tests:** Verified home screen, rubric editor (load EAROS-REFARCH-001), assessment wizard (4-step flow), evaluation viewer (19 criteria loaded), security headers present in HTTP responses, path traversal blocked (`../EAROS-evil/` returns 403), YAML-only write restriction enforced
+4. **Published** as `@trohde/earos@1.3.0` via CI pipeline (GitHub Actions)
+
+## Prevention Strategies
+
+### Path Traversal Prevention
+- **Canonical pattern:** Always append `path.sep` before `startsWith` comparison. Wrap in a single `assertWithinDirectory(base, candidate)` utility.
+- **CI check:** Grep for `.startsWith(` on path variables without adjacent `path.sep` concatenation.
+
+### Server Binding
+- **Rule:** Every `app.listen()` must specify an explicit bind address. Single-argument `listen()` calls should fail linting.
+
+### Fail-Closed Validation
+- **Rule:** Validation functions must never return "valid" on error. Every `catch` block in a validation path must either re-throw or return a failure result.
+- **Test requirement:** Every validation function needs a test with a corrupt/missing schema asserting failure.
+
+### Agent Parity
+- **Design principle:** Every CLI command must support `--json`. This is non-negotiable for agent-native tools.
+- **Test:** Parameterized test asserting `--json` produces valid JSON for every registered command.
+
+### TypeScript Strict Mode
+- **CI guardrail:** Verify `strict: true` stays enabled in `tsconfig.json`:
+  ```bash
+  node -e "const c = require('./tsconfig.json'); if (!c.compilerOptions.strict) process.exit(1)"
+  ```
+
+### Dead Code Detection
+- **CI check:** Compare `.ts` files on disk against `tsc --listFiles` output. Any uncompiled `.ts` under `src/` fails the build.
+
+## Code Review Checklist (Express + CLI)
+
+### Express Server
+- [ ] Every `app.listen()` specifies an explicit bind address
+- [ ] File path validation uses `resolve()` + separator-appended `startsWith`
+- [ ] Error handlers do not leak stack traces or internal paths
+- [ ] Security headers set (`X-Content-Type-Options`, `X-Frame-Options`)
+- [ ] Body parser limits scoped per route based on actual need
+
+### CLI Tool
+- [ ] Every command supports `--json` for structured output
+- [ ] Validation failures produce structured error output
+- [ ] No `catch` block silently swallows errors in validation paths
+
+### TypeScript / Build
+- [ ] `tsconfig.json` has `strict: true`
+- [ ] Every `.ts` file under `src/` is included in compilation
+- [ ] Shared logic lives in `utils/`, not duplicated across files
+
+## Related Documents
+
+- **Prior art:** [Site review findings plan](../../docs/plans/2026-03-23-001-refactor-site-review-findings-plan.md) — same review-then-fix methodology applied to the `site/` frontend (26 findings, 8 agents)
+- **Implementation plan:** [CLI review findings plan](../../docs/plans/2026-03-23-002-refactor-cli-review-findings-plan.md) — the detailed 5-phase plan for this work
+- **Review agents used:** Security Sentinel, Performance Oracle, Architecture Strategist, Kieran TypeScript Reviewer, Agent-Native Reviewer, Code Simplicity Reviewer

package/assets/init/docs/terminology.md

@@ -47,7 +47,7 @@ An artifact-type extension that inherits the core meta-rubric and adds criteria
 A set of cross-cutting criteria injected on top of any core+profile combination, independent of artifact type. Overlays address concerns that recur across artifact types (security, data governance, regulatory compliance). They use `kind: overlay`, `artifact_type: any`, and `scoring.method: append_to_base_rubric`. Applied by context, not artifact type; they cannot remove or weaken base gates. Used in: Section 5.3, `overlays/` directory.
 
 **Gate**
-A criterion-level enforcement mechanism that prevents a poor score on a critical criterion being masked by high scores elsewhere. Gates are evaluated before any weighted average is computed. Gate severities: `none`, `advisory`, `major`, `critical` — a critical gate failure blocks a passing status regardless of the average --- the specific outcome (`Reject` or `Not Reviewable`) depends on the criterion's `failure_effect`. Used in: Section 7.3, all rubric YAML `gate` fields.
+A criterion-level enforcement mechanism that prevents a poor score on a critical criterion being masked by high scores elsewhere. Gates are evaluated before any weighted average is computed. Gate severities: `none`, `advisory`, `major`, `critical` — a critical gate failure blocks a passing status regardless of the average — the specific outcome (`Reject` or `Not Reviewable`) depends on the criterion's `failure_effect`. Used in: Section 7.3, all rubric YAML `gate` fields.
 
 **Evidence anchor**
 A direct pointer to the specific excerpt, diagram, section, or reference in the artifact that supports a score. Required for every scored criterion under the RULERS protocol. Anchors are classified as `observed`, `inferred`, or `external`. "The artifact seems to address this" is not a valid evidence anchor. Used in: Section 10.1, all evaluation record `evidence_anchor` fields.

package/bin.js

@@ -1,5 +1,5 @@
 #!/usr/bin/env node
-import { readFileSync, existsSync } from 'fs'
+import { readFileSync, writeFileSync, existsSync, readdirSync } from 'fs'
 import { resolve, dirname } from 'path'
 import { fileURLToPath } from 'url'
 import { spawnSync } from 'child_process'
@@ -28,13 +28,17 @@ function findSchemasDir() {
 
 // ─── validate command ─────────────────────────────────────────────────────────
 
-async function validateFile(filePath) {
+async function validateFile(filePath, jsonMode) {
   const absPath = resolve(filePath)
   let content
   try {
     content = readFileSync(absPath, 'utf8')
   } catch {
-    console.error(`Cannot read file: ${absPath}`)
+    if (jsonMode) {
+      process.stdout.write(JSON.stringify({ valid: false, file: filePath, errors: [{ path: '(root)', message: `Cannot read file: ${absPath}` }] }) + '\n')
+    } else {
+      console.error(`Cannot read file: ${absPath}`)
+    }
     process.exit(1)
   }
 
@@ -42,7 +46,11 @@ async function validateFile(filePath) {
   try {
     data = yaml.load(content)
   } catch (e) {
-    console.error(`YAML parse error: ${e.message}`)
+    if (jsonMode) {
+      process.stdout.write(JSON.stringify({ valid: false, file: filePath, errors: [{ path: '(root)', message: `YAML parse error: ${e.message}` }] }) + '\n')
+    } else {
+      console.error(`YAML parse error: ${e.message}`)
+    }
     process.exit(1)
   }
 
@@ -64,40 +72,81 @@ async function validateFile(filePath) {
   const valid = validate(data)
 
   if (valid) {
-    console.log(`✓ ${filePath} is valid (kind: ${kind ?? 'unknown'})`)
+    if (jsonMode) {
+      process.stdout.write(JSON.stringify({ valid: true, file: filePath, kind: kind ?? 'unknown' }) + '\n')
+    } else {
+      console.log(`✓ ${filePath} is valid (kind: ${kind ?? 'unknown'})`)
+    }
     process.exit(0)
   } else {
-    console.error(`✗ ${filePath} — ${validate.errors.length} error(s):`)
-    for (const err of validate.errors) {
-      console.error(`  ${err.instancePath || '(root)'} ${err.message}`)
+    const result = {
+      valid: false,
+      file: filePath,
+      kind: kind ?? 'unknown',
+      errors: validate.errors.map(err => ({
+        path: err.instancePath || '(root)',
+        message: err.message
+      }))
+    }
+    if (jsonMode) {
+      process.stdout.write(JSON.stringify(result) + '\n')
+    } else {
+      console.error(`✗ ${filePath} — ${validate.errors.length} error(s):`)
+      for (const err of validate.errors) {
+        console.error(`  ${err.instancePath || '(root)'} ${err.message}`)
+      }
     }
     process.exit(1)
   }
 }
 
+// ─── list evaluations helper ────────────────────────────────────────────────
+
+function findEvaluationFiles(baseDir, prefix) {
+  const found = []
+  if (!existsSync(baseDir)) return found
+  try {
+    for (const entry of readdirSync(baseDir, { withFileTypes: true })) {
+      if (entry.isDirectory()) {
+        found.push(...findEvaluationFiles(resolve(baseDir, entry.name), `${prefix}${entry.name}/`))
+      } else if (entry.name.endsWith('.evaluation.yaml') || entry.name === 'evaluation.yaml') {
+        found.push({ path: `${prefix}${entry.name}`, name: entry.name })
+      }
+    }
+  } catch { /* skip unreadable dirs */ }
+  return found
+}
+
 // ─── CLI dispatch ──────────────────────────────────────────────────────────────
 
 if (args[0] === '--help' || args[0] === '-h') {
-  console.log(`earos — EAROS editor and CLI
+  console.log(`earos — EaROS editor and CLI
 
 Usage:
   earos                             Open the editor in your browser
   earos <file.yaml>                 Open the editor with a file pre-loaded
-  earos init [dir] [--icons]        Scaffold a new EAROS workspace (default: current dir)
-  earos validate <file.yaml>        Validate any EAROS YAML — rubric, evaluation, or artifact (exit 0/1)
-  earos export <file.yaml>          Export artifact YAML as Word document (.docx)
+  earos init [dir] [--icons]        Scaffold a new EaROS workspace (default: current dir)
+  earos validate <file.yaml> [--json]  Validate any EaROS YAML (exit 0/1)
+  earos export <file.yaml> [--format docx|md]  Export YAML as Word or Markdown (default: docx)
+  earos list evaluations [--json]   List evaluation files with summary metadata
   earos manifest                    Regenerate earos.manifest.yaml
   earos manifest add <file>         Add a file to the manifest
-  earos manifest check              Verify manifest matches filesystem
-  earos dev                         Start Vite dev server (development only)`)
+  earos manifest check [--json]     Verify manifest matches filesystem
+  earos manifest list [--json]      List manifest contents
+  earos dev                         Start Vite dev server (development only)
+
+  Environment: EAROS_HOST=0.0.0.0 earos   Bind to all interfaces (default: 127.0.0.1)`)
   process.exit(0)
 } else if (args[0] === 'export') {
-  // Export artifact YAML → Word document
+  // Export YAML → Word document or Markdown
   if (!args[1]) {
-    console.error('Usage: earos export <file.yaml>')
+    console.error('Usage: earos export <file.yaml> [--format docx|md]')
     process.exit(1)
   }
-  const inputPath = resolve(args[1])
+  const formatArg = args.indexOf('--format')
+  const format = formatArg >= 0 && args[formatArg + 1] ? args[formatArg + 1] : 'docx'
+  const fileArg = args.find((a, i) => i > 0 && a !== '--format' && (i < formatArg || i > formatArg + 1 || formatArg < 0)) ?? args[1]
+  const inputPath = resolve(fileArg)
   if (!existsSync(inputPath)) {
     console.error(`File not found: ${inputPath}`)
     process.exit(1)
@@ -107,27 +156,97 @@ Usage:
     console.error(`Cannot read file: ${e.message}`)
     process.exit(1)
   }
-  let artifactData
-  try { artifactData = yaml.load(exportContent) } catch (e) {
+  let exportData
+  try { exportData = yaml.load(exportContent) } catch (e) {
     console.error(`YAML parse error: ${e.message}`)
     process.exit(1)
   }
-  if (artifactData?.kind !== 'artifact') {
-    console.error('File does not appear to be an artifact (expected kind: artifact)')
-    process.exit(1)
-  }
-  const { exportToDocx } = await import('./export-docx.js')
-  const outputPath = inputPath.replace(/\.(yaml|yml)$/i, '') + '.docx'
-  console.log('Rendering diagrams and building Word document…')
-  try {
-    const { writeFileSync } = await import('fs')
-    const buf = await exportToDocx(artifactData)
-    writeFileSync(outputPath, buf)
+
+  const kind = exportData?.kind
+
+  if (format === 'md') {
+    // Markdown export
+    const { exportArtifactToMarkdown, exportRubricToMarkdown } = await import('./utils/export-markdown.js')
+    let md
+    if (kind === 'artifact' || !kind) {
+      md = exportArtifactToMarkdown(exportData)
+    } else if (kind === 'core_rubric' || kind === 'profile' || kind === 'overlay') {
+      md = exportRubricToMarkdown(exportData)
+    } else if (kind === 'evaluation') {
+      // Evaluation markdown requires assembled dimensions — export as YAML-derived summary
+      md = exportRubricToMarkdown(exportData)
+    } else {
+      console.error(`Unsupported kind for Markdown export: ${kind}`)
+      process.exit(1)
+    }
+    const outputPath = inputPath.replace(/\.(yaml|yml)$/i, '') + '.md'
+    writeFileSync(outputPath, md, 'utf8')
     console.log(`✓ Exported → ${outputPath}`)
-  } catch (e) {
-    console.error(`Export failed: ${e.message}`)
-    process.exit(1)
+  } else {
+    // DOCX export — route by kind
+    const { exportToDocx, exportRubricToDocx, exportEvaluationToDocx } = await import('./export-docx.js')
+    let buf, outputPath
+    if (kind === 'artifact' || !kind) {
+      outputPath = inputPath.replace(/\.(yaml|yml)$/i, '') + '.docx'
+      console.log('Rendering diagrams and building Word document…')
+      buf = await exportToDocx(exportData)
+    } else if (kind === 'evaluation') {
+      outputPath = inputPath.replace(/\.(yaml|yml)$/i, '') + '-assessment.docx'
+      console.log('Building evaluation Word document…')
+      buf = await exportEvaluationToDocx(exportData)
+    } else if (kind === 'core_rubric' || kind === 'profile' || kind === 'overlay') {
+      outputPath = inputPath.replace(/\.(yaml|yml)$/i, '') + '.docx'
+      console.log('Building rubric Word document…')
+      buf = await exportRubricToDocx(exportData)
+    } else {
+      console.error(`Unsupported kind for export: ${kind}`)
+      process.exit(1)
+    }
+    try {
+      writeFileSync(outputPath, buf)
+      console.log(`✓ Exported → ${outputPath}`)
+    } catch (e) {
+      console.error(`Export failed: ${e.message}`)
+      process.exit(1)
+    }
   }
+} else if (args[0] === 'list' && args[1] === 'evaluations') {
+  // List evaluation files with summary metadata
+  const REPO_ROOT = findRepoRoot()
+  const jsonMode = args.includes('--json')
+  const files = []
+  for (const dir of ['examples', 'evaluations']) {
+    files.push(...findEvaluationFiles(resolve(REPO_ROOT, dir), `${dir}/`))
+  }
+  const summaries = files.map(f => {
+    const absPath = resolve(REPO_ROOT, f.path)
+    try {
+      const data = yaml.load(readFileSync(absPath, 'utf8'))
+      return {
+        path: f.path,
+        overall_status: data?.overall_status ?? undefined,
+        overall_score: data?.overall_score ?? undefined,
+        evaluation_date: data?.evaluation_date ?? undefined,
+        title: data?.artifact_ref?.title ?? data?.artifact_id ?? f.name.replace(/\.evaluation\.yaml$|\.yaml$/, ''),
+      }
+    } catch {
+      return { path: f.path, title: f.name }
+    }
+  })
+  if (jsonMode) {
+    process.stdout.write(JSON.stringify({ summaries }, null, 2) + '\n')
+  } else {
+    if (summaries.length === 0) {
+      console.log('No evaluation files found in examples/ or evaluations/')
+    } else {
+      for (const s of summaries) {
+        const score = s.overall_score != null ? ` (${s.overall_score.toFixed(2)})` : ''
+        const status = s.overall_status ? ` [${s.overall_status}]` : ''
+        console.log(`  ${s.path}  ${s.title}${score}${status}`)
+      }
+    }
+  }
+  process.exit(0)
 } else if (args[0] === 'init') {
   const initArgs = args.slice(1)
   let targetDir = '.'
@@ -153,11 +272,12 @@ Usage:
   const { initWorkspace } = await import('./init.js')
   await initWorkspace(targetDir, { downloadIcons })
 } else if (args[0] === 'validate') {
-  if (!args[1]) {
-    console.error('Usage: earos validate <file.yaml>')
+  const valFile = args.find((a, i) => i > 0 && a !== '--json')
+  if (!valFile) {
+    console.error('Usage: earos validate <file.yaml> [--json]')
     process.exit(1)
   }
-  await validateFile(args[1])
+  await validateFile(valFile, args.includes('--json'))
 } else if (args[0] === 'manifest') {
   const manifestCli = resolve(__dirname, 'manifest-cli.mjs')
   const result = spawnSync(process.execPath, [manifestCli, ...args.slice(1)], {

package/dist/assets/{_basePickBy-PmSUrUsK.js → _basePickBy-BlC_TeV6.js}

@@ -1 +1 @@
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package/dist/assets/{_baseUniq-HuZouVIz.js → _baseUniq-CVy7rcC1.js}

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