@triedotdev/mcp 1.0.148 → 1.0.151

package/dist/index.js

@@ -1,10 +1,10 @@
 #!/usr/bin/env node
 import {
   GitHubIngester
-} from "./chunk-YOJGSRZK.js";
+} from "./chunk-V3O7C2LY.js";
 import {
   CodebaseIndex
-} from "./chunk-V7AY2EJO.js";
+} from "./chunk-WOTLY5NA.js";
 import {
   appendToSection,
   completeBootstrap,
@@ -22,10 +22,10 @@ import {
   needsBootstrap,
   projectInfoExists,
   updateProjectSection
-} from "./chunk-7OJ6JIPL.js";
+} from "./chunk-REHKDCI6.js";
 import {
   LinearIngester
-} from "./chunk-LD7ZEFNY.js";
+} from "./chunk-3KZBC3RJ.js";
 import {
   ExtractionPipeline,
   GitHubBranchesTool,
@@ -43,76 +43,74 @@ import {
   TrieGetRelatedGovernanceTool,
   TriePipelineTool,
   TrieQueryContextTool,
-  TrieScanTool,
   TrieTellTool,
   getPrompt,
   getSystemPrompt,
   handleCheckpointTool
-} from "./chunk-J7CEBSEB.js";
-import "./chunk-23RJT5WT.js";
-import "./chunk-N2EDZTKG.js";
+} from "./chunk-SU3WCAC4.js";
+import "./chunk-F7BMFOZ6.js";
+import "./chunk-4UDBGYI3.js";
 import {
   getOutputManager
 } from "./chunk-TIMIKBY2.js";
-import "./chunk-YEIJW6X6.js";
-import "./chunk-XTTZAQWJ.js";
-import "./chunk-3MUCUZ46.js";
+import "./chunk-JIS2OCZR.js";
+import "./chunk-74R4XSFB.js";
+import "./chunk-ABY2R7OK.js";
 import {
   exportToJson,
   formatFriendlyError,
   importFromJson,
   isTrieInitialized
-} from "./chunk-4PAAGLKO.js";
+} from "./chunk-G7Q23IGF.js";
 import {
   loadConfig
-} from "./chunk-NKHO34UZ.js";
-import "./chunk-4C67GV3O.js";
+} from "./chunk-TU7D5DEW.js";
+import "./chunk-TCNCNWGV.js";
 import "./chunk-ZV2K6M7T.js";
 import {
   findCrossProjectPatterns,
   getGlobalMemoryStats,
   listTrackedProjects,
   searchGlobalPatterns
-} from "./chunk-WMDFK7LI.js";
+} from "./chunk-IFBEAOHH.js";
 import {
   ContextGraph
-} from "./chunk-FH335WL5.js";
-import "./chunk-T6PS3MXJ.js";
+} from "./chunk-TWQPOVRA.js";
+import "./chunk-7HYOJ4Q7.js";
 import {
   isAIAvailable,
   runAIAnalysis
-} from "./chunk-FPEMP54L.js";
-import "./chunk-LT6VUZG2.js";
+} from "./chunk-OJXFQRUE.js";
+import "./chunk-GLY76TSI.js";
 import "./chunk-F4NJ4CBP.js";
 import "./chunk-IXO4G4D3.js";
 import "./chunk-6NLHFIYA.js";
 import {
   getStorage
-} from "./chunk-FG467PDD.js";
-import {
-  getSkillRegistry
-} from "./chunk-G76DYVGX.js";
+} from "./chunk-LNUMECBJ.js";
 import {
   getAutonomyConfig
-} from "./chunk-5KJ4UJOY.js";
+} from "./chunk-QQG42HCI.js";
 import {
   findSimilarIssues,
-  getChangedFilesSinceTimestamp,
-  getGitChangedFiles,
   getMemoryStats,
   getRecentIssues,
   markIssueResolved,
   purgeIssues,
-  runShellCommandSync,
   searchIssues,
   storeIssues
-} from "./chunk-62POBLFC.js";
-import "./chunk-4MJ52WBH.js";
+} from "./chunk-ED7PLRQA.js";
+import "./chunk-EFWVF6TI.js";
+import {
+  getChangedFilesSinceTimestamp,
+  getGitChangedFiles,
+  runShellCommandSync
+} from "./chunk-TWPX6PHF.js";
 import "./chunk-43X6JBEM.js";
 import {
   getTrieDirectory,
   getWorkingDirectory
-} from "./chunk-SH7H3WRU.js";
+} from "./chunk-4TQQP7JD.js";
 import {
   isInteractiveMode
 } from "./chunk-APMV77PU.js";
@@ -1277,7 +1275,7 @@ ${f.content.slice(0, 1e3)}`
   async checkAndGenerateHypotheses(projectPath) {
     if (!isAIAvailable()) return;
     try {
-      const { getHypothesisEngine } = await import("./hypothesis-JCUMZKTG.js");
+      const { getHypothesisEngine } = await import("./hypothesis-4UPE7KXU.js");
       const { getOutputManager: getOutputManager2 } = await import("./output-manager-DZO5LGSG.js");
       const hypothesisEngine = getHypothesisEngine(projectPath);
       const recentIssues = Array.from(this.state.issueCache.values()).flat();
@@ -1344,8 +1342,8 @@ ${f.content.slice(0, 1e3)}`
     const totalIssues = Array.from(this.state.issueCache.values()).flat().length;
     if (totalIssues < 5) return;
     try {
-      const { ContextGraph: ContextGraph2 } = await import("./graph-J4OGTYCO.js");
-      const { IncidentIndex } = await import("./incident-index-BWW2UEY7.js");
+      const { ContextGraph: ContextGraph2 } = await import("./graph-26JPZ3DF.js");
+      const { IncidentIndex } = await import("./incident-index-H6APJ4S3.js");
       const { TriePatternDiscovery } = await import("./pattern-discovery-F7LU5K6E.js");
       const graph = new ContextGraph2(projectPath);
       const incidentIndex = await IncidentIndex.build(graph, projectPath);
@@ -1487,7 +1485,7 @@ ${f.content.slice(0, 1e3)}`
       if (remaining < 500) return;
       try {
         const graph = new ContextGraph(projectPath);
-        const { getActiveGoals, recordGoalViolationCaught } = await import("./goal-validator-DA3JQ6JN.js");
+        const { getActiveGoals, recordGoalViolationCaught } = await import("./goal-validator-EM5XVWVC.js");
         console.debug("[AI Watcher] Loading active goals...");
         const activeGoals = await getActiveGoals(projectPath);
         const hasGoals = activeGoals.length > 0;
@@ -1739,7 +1737,7 @@ ${filesBlock}`,
     const projectPath = this.watchedDirectory || getWorkingDirectory(void 0, true);
     console.debug("[Initial Hypothesis] Starting initial hypothesis generation", { projectPath });
     try {
-      const { getHypothesisEngine } = await import("./hypothesis-JCUMZKTG.js");
+      const { getHypothesisEngine } = await import("./hypothesis-4UPE7KXU.js");
       const hypothesisEngine = getHypothesisEngine(projectPath);
       console.debug("[Initial Hypothesis] Running AI-powered hypothesis generation...");
       const generated = await hypothesisEngine.generateHypothesesWithAI({
@@ -1797,7 +1795,7 @@ ${filesBlock}`,
     const projectPath = this.watchedDirectory || getWorkingDirectory(void 0, true);
     console.debug("[Initial Scan] Starting initial goal compliance scan", { projectPath });
     try {
-      const { getActiveGoals, recordGoalViolationCaught } = await import("./goal-validator-DA3JQ6JN.js");
+      const { getActiveGoals, recordGoalViolationCaught } = await import("./goal-validator-EM5XVWVC.js");
       const activeGoals = await getActiveGoals(projectPath);
       console.debug("[Initial Scan] Loaded goals for initial scan:", {
         goalCount: activeGoals.length,
@@ -1960,7 +1958,7 @@ ${filesBlock}`,
       const graph = new ContextGraph(projectPath);
       if (hasLinear) {
         try {
-          const { LinearIngester: LinearIngester2 } = await import("./linear-ingester-JRDQAIAA.js");
+          const { LinearIngester: LinearIngester2 } = await import("./linear-ingester-WIUBWF55.js");
           const ingester = new LinearIngester2(projectPath, graph);
           await ingester.syncTickets();
           if (!isInteractiveMode()) {
@@ -1974,7 +1972,7 @@ ${filesBlock}`,
       }
       if (hasGithub) {
         try {
-          const { GitHubIngester: GitHubIngester2 } = await import("./github-ingester-J2ZFYXVE.js");
+          const { GitHubIngester: GitHubIngester2 } = await import("./github-ingester-C66ZRUYC.js");
           const ingester = new GitHubIngester2(graph);
           const token = await ingester.getApiToken();
           const repoInfo = ingester.getRepoInfo(projectPath);
@@ -2074,7 +2072,7 @@ Use \`trie_watch start\` to begin autonomous scanning.`
     ).join("\n");
     let agencyStatus = "";
     try {
-      const { getTrieAgent } = await import("./trie-agent-6A7YBNTQ.js");
+      const { getTrieAgent } = await import("./trie-agent-GJJJCL6P.js");
       const trieAgent = getTrieAgent(this.watchedDirectory || getWorkingDirectory(void 0, true));
       await trieAgent.initialize();
       const status = await trieAgent.getAgencyStatus();
@@ -2183,7 +2181,7 @@ ${recentNudges || "(none)"}
 Total issues: ${this.state.totalIssuesFound}
 Files scanned: ${this.state.filesScanned}
 
-To get a full report, run \`trie_scan\` on your codebase.`
+To get a full report, run \`trie watch\` on your codebase.`
       }]
     };
   }
@@ -2193,37 +2191,25 @@ To get a full report, run \`trie_scan\` on your codebase.`
 import { readFile as readFile3 } from "fs/promises";
 import { existsSync as existsSync3 } from "fs";
 import { join as join3, basename as basename3, resolve as resolve2, isAbsolute as isAbsolute2 } from "path";
-
-// src/skills/built-in/super-reviewer.ts
-var CRITICAL_REVIEW_CHECKLIST = {
-  stateAndLifecycle: [
-    "Uninitialized state accessed before setup",
-    "Missing cleanup on unmount/dispose",
-    "State mutations in wrong lifecycle phase"
-  ],
-  edgeCasesAndRaces: [
-    "Race conditions in async operations",
-    "Missing error handling for edge cases",
-    "Unhandled promise rejections"
-  ],
-  missingPieces: [
-    "Missing input validation",
-    "Missing error handling",
-    "Missing logging/monitoring"
-  ]
-};
-var SuperReviewerAgent = class {
-  async review(_files) {
-    return { issues: [] };
-  }
-  async buildReviewWorkflow(files, context) {
-    return { files, context };
-  }
-};
-
-// src/tools/pr-review.ts
 var TriePRReviewTool = class {
-  agent = new SuperReviewerAgent();
+  // Review workflow is now ledger-driven; keep a lightweight built-in checklist.
+  CRITICAL_REVIEW_CHECKLIST = {
+    stateAndLifecycle: [
+      "Uninitialized state accessed before setup",
+      "Missing cleanup on unmount/dispose",
+      "State mutations in wrong lifecycle phase"
+    ],
+    edgeCasesAndRaces: [
+      "Race conditions in async operations",
+      "Missing error handling for edge cases",
+      "Unhandled promise rejections"
+    ],
+    missingPieces: [
+      "Missing input validation",
+      "Missing error handling",
+      "Missing logging/monitoring"
+    ]
+  };
   exec(command, cwd, maxBuffer) {
     const opts = {
       captureOutput: false,
@@ -2271,18 +2257,15 @@ Usage:
         };
       }
       const designDocs = await this.findDesignDocs(changes.files, prInfo);
-      const workflow = await this.agent.buildReviewWorkflow(
-        changes.files,
-        {
-          prNumber: prInfo.number,
-          prTitle: prInfo.title,
-          prAuthor: prInfo.author,
-          baseBranch: prInfo.baseBranch,
-          headBranch: prInfo.headBranch,
-          mode: mode || "own",
-          designDocs
-        }
-      );
+      const workflow = this.buildReviewWorkflow(changes.files, {
+        ...prInfo.number ? { prNumber: prInfo.number } : {},
+        ...prInfo.title ? { prTitle: prInfo.title } : {},
+        ...prInfo.author ? { prAuthor: prInfo.author } : {},
+        ...prInfo.baseBranch ? { baseBranch: prInfo.baseBranch } : {},
+        ...prInfo.headBranch ? { headBranch: prInfo.headBranch } : {},
+        mode: mode || "own",
+        designDocs
+      });
       const fileContents = await this.preloadFiles(changes.files.map((f) => f.path));
       const reviewPrompt = this.generateReviewPrompt(workflow, changes, fileContents);
       return {
@@ -2421,6 +2404,36 @@ Usage:
     }
     return files;
   }
+  buildReviewWorkflow(files, context) {
+    const totalAdditions = files.reduce((sum, f) => sum + (f.additions || 0), 0);
+    const totalDeletions = files.reduce((sum, f) => sum + (f.deletions || 0), 0);
+    const reviewMode = context.mode === "others" ? "others" : "own";
+    const reviewInstructions = {
+      mode: reviewMode,
+      description: reviewMode === "own" ? "Your PR \u2014 focus on footguns, missing tests, and production risks." : "Someone else's PR \u2014 focus on correctness, clarity, and maintainability."
+    };
+    const sorted = [...files].sort((a, b) => a.path.localeCompare(b.path));
+    const fileOrder = sorted.map((f, i) => ({
+      index: i + 1,
+      path: f.path,
+      reason: i === 0 ? "Start here to establish baseline context" : "Proceed in filename order"
+    }));
+    return {
+      metadata: {
+        ...context.prNumber ? { prNumber: context.prNumber } : {},
+        prTitle: context.prTitle || "PR Review",
+        prAuthor: context.prAuthor || "unknown",
+        baseBranch: context.baseBranch || "unknown",
+        headBranch: context.headBranch || "unknown",
+        totalFiles: files.length,
+        totalAdditions,
+        totalDeletions,
+        designDocs: context.designDocs
+      },
+      fileOrder,
+      reviewInstructions
+    };
+  }
   /**
    * Find related design docs
    */
@@ -2536,21 +2549,21 @@ Usage:
 `;
     prompt += `**State & Lifecycle:**
 `;
-    for (const check of CRITICAL_REVIEW_CHECKLIST.stateAndLifecycle) {
+    for (const check of this.CRITICAL_REVIEW_CHECKLIST.stateAndLifecycle) {
       prompt += `- ${check}
 `;
     }
     prompt += `
 **Edge Cases & Races:**
 `;
-    for (const check of CRITICAL_REVIEW_CHECKLIST.edgeCasesAndRaces) {
+    for (const check of this.CRITICAL_REVIEW_CHECKLIST.edgeCasesAndRaces) {
       prompt += `- ${check}
 `;
     }
     prompt += `
 **Missing Pieces:**
 `;
-    for (const check of CRITICAL_REVIEW_CHECKLIST.missingPieces) {
+    for (const check of this.CRITICAL_REVIEW_CHECKLIST.missingPieces) {
       prompt += `- ${check}
 `;
     }
@@ -2898,7 +2911,7 @@ var TrieInitTool = class {
       "",
       "1. Edit `.trie/PROJECT.md` with your project description",
       "2. Define coding standards in `.trie/RULES.md`",
-      "3. Run `trie_scan` to analyze your codebase",
+      "3. Run `trie watch` to analyze your codebase",
       '4. Run `trie_init` with action="complete" when setup is done'
     );
     return lines.join("\n");
@@ -3528,7 +3541,6 @@ var ToolRegistry = class {
     this.defineToolSchemas();
   }
   initializeTools() {
-    this.tools.set("scan", new TrieScanTool());
     this.tools.set("fix", new TrieFixTool());
     this.tools.set("cloud_fix", new TrieCloudFixTool());
     this.tools.set("explain", new TrieExplainTool());
@@ -3560,81 +3572,6 @@ var ToolRegistry = class {
   }
   defineToolSchemas() {
     this.definitions = [
-      {
-        name: "trie_scan",
-        description: "Scan code with intelligent agent selection. Scans entire codebase if no files specified. Auto-updates .trie/AGENTS.md with results. Alias: scan",
-        inputSchema: {
-          type: "object",
-          properties: {
-            files: {
-              type: "array",
-              items: { type: "string" },
-              description: "Files to scan (absolute paths). If empty, scans entire codebase."
-            },
-            directory: {
-              type: "string",
-              description: "Directory to scan (if files not specified). Defaults to current working directory."
-            },
-            context: {
-              type: "object",
-              properties: {
-                changeType: {
-                  type: "string",
-                  enum: ["ui", "api", "database", "auth", "payment", "general"]
-                },
-                isNewFeature: { type: "boolean" },
-                touchesUserData: { type: "boolean" }
-              }
-            },
-            forceAgents: {
-              type: "array",
-              items: { type: "string" },
-              description: "Manually specify agents to run (overrides triaging)"
-            },
-            parallel: {
-              type: "boolean",
-              description: "Run agents in parallel (default true)"
-            },
-            cache: {
-              type: "boolean",
-              description: "Enable scan result caching (default true)"
-            },
-            maxConcurrency: {
-              type: "number",
-              description: "Max parallel agents"
-            },
-            timeoutMs: {
-              type: "number",
-              description: "Agent timeout in milliseconds"
-            },
-            streaming: {
-              type: "boolean",
-              description: "Stream progress updates"
-            },
-            interactive: {
-              type: "boolean",
-              description: "Enable interactive CLI dashboard (TTY only)"
-            },
-            format: {
-              type: "string",
-              enum: ["text", "json"],
-              description: "Output format for optional file output"
-            },
-            output: {
-              type: "string",
-              description: "Output file path when format is json"
-            },
-            workers: {
-              type: "boolean",
-              description: "Use worker threads for parallel execution"
-            }
-          }
-        },
-        // MCP Apps: Interactive scan dashboard
-        _meta: {
-          ui: { resourceUri: "ui://trie/scan-dashboard" }
-        }
-      },
       {
         name: "trie",
         description: "Quick menu of available Trie commands. TIP: Read trie://context first for project state and priorities. Call with `action` to run directly.",
@@ -3643,11 +3580,7 @@ var ToolRegistry = class {
           properties: {
             action: {
               type: "string",
-              description: "Optional quick action: scan, security, legal, bugs, types, devops, architecture, ux, clean, soc2, performance, e2e, visual_qa, data_flow, agent_smith, pr_review, watch, fix, explain"
-            },
-            agent: {
-              type: "string",
-              description: "Agent key when action=agent or when using a custom skill name"
+              description: "Optional quick action: pr_review, watch, fix, explain, test, visual_qa_browser"
             },
             files: {
               type: "array",
@@ -3657,17 +3590,6 @@ var ToolRegistry = class {
             directory: {
               type: "string",
               description: "Directory to scan (defaults to detected workspace)"
-            },
-            context: {
-              type: "object",
-              properties: {
-                changeType: {
-                  type: "string",
-                  enum: ["ui", "api", "database", "auth", "payment", "general"]
-                },
-                isNewFeature: { type: "boolean" },
-                touchesUserData: { type: "boolean" }
-              }
             }
           }
         }
@@ -3709,7 +3631,7 @@ var ToolRegistry = class {
             issueIds: {
               type: "array",
               items: { type: "string" },
-              description: "Issue IDs to dispatch (from trie_scan). If omitted, dispatches all cloud-eligible pending issues. IGNORED if file+issue+fix are provided (ad-hoc mode)."
+              description: "Issue IDs to dispatch (from trie_fix/watch). If omitted, dispatches all cloud-eligible pending issues. IGNORED if file+issue+fix are provided (ad-hoc mode)."
             },
             forceCloud: {
               type: "boolean",
@@ -3903,7 +3825,7 @@ var ToolRegistry = class {
       },
       {
         name: "trie_init",
-        description: "Initialize bootstrap files (.trie/RULES.md, .trie/TEAM.md, .trie/BOOTSTRAP.md). Detects stack and suggests skills.",
+        description: "Initialize bootstrap files (.trie/RULES.md, .trie/TEAM.md, .trie/BOOTSTRAP.md). Detects stack.",
         inputSchema: {
           type: "object",
           properties: {
@@ -4239,13 +4161,6 @@ import { readdir, readFile as readFile4 } from "fs/promises";
 import { existsSync as existsSync4 } from "fs";
 import { join as join4, dirname as dirname2 } from "path";
 import { fileURLToPath } from "url";
-
-// src/skills/installer.ts
-async function listInstalledSkills() {
-  return [];
-}
-
-// src/server/resource-manager.ts
 var UI_APPS = {
   "ledger": {
     name: "Decision Ledger",
@@ -4269,7 +4184,6 @@ var UI_APPS = {
   }
 };
 var ResourceManager = class {
-  skillRegistry = getSkillRegistry();
   /**
    * Get all available resources dynamically
    */
@@ -4294,12 +4208,6 @@ var ResourceManager = class {
         description: "Detailed context state with scan history and priorities",
         mimeType: "application/json"
       },
-      {
-        uri: "trie://skills",
-        name: "Available Skills",
-        description: "List of all available Trie skills (built-in and custom)",
-        mimeType: "application/json"
-      },
       {
         uri: "trie://config",
         name: "Trie Configuration",
@@ -4318,12 +4226,6 @@ var ResourceManager = class {
         description: "Summary of loaded vulnerability detection signatures",
         mimeType: "application/json"
       },
-      {
-        uri: "trie://skills/installed",
-        name: "Installed Skills",
-        description: "External skills installed from skills.sh that Trie can apply",
-        mimeType: "application/json"
-      },
       {
         uri: "trie://bootstrap",
         name: "Bootstrap Status",
@@ -4356,7 +4258,6 @@ var ResourceManager = class {
       }
     );
     resources.push(...await this.getScanReportResources());
-    resources.push(...await this.getCustomSkillResources());
     resources.push(...this.getUIAppResources());
     return resources;
   }
@@ -4375,20 +4276,6 @@ var ResourceManager = class {
       return [];
     }
   }
-  async getCustomSkillResources() {
-    try {
-      await this.skillRegistry.loadCustomSkills();
-      const customSkills = this.skillRegistry.getCustomSkills();
-      return customSkills.map((skill) => ({
-        uri: `trie://skills/custom/${skill.name}`,
-        name: `Custom Skill: ${skill.name}`,
-        description: skill.description,
-        mimeType: "application/json"
-      }));
-    } catch {
-      return [];
-    }
-  }
   /**
    * Read content for a specific resource
    */
@@ -4407,12 +4294,6 @@ var ResourceManager = class {
     if (parsedUri === "context/state") {
       return await this.getContextStateResource(uri);
     }
-    if (parsedUri === "skills") {
-      return await this.getBuiltInSkillsResource(uri);
-    }
-    if (parsedUri.startsWith("skills/custom/")) {
-      return await this.getCustomSkillResource(uri, parsedUri);
-    }
     if (parsedUri === "config") {
       return await this.getConfigResource(uri);
     }
@@ -4422,9 +4303,6 @@ var ResourceManager = class {
     if (parsedUri === "signatures") {
       return await this.getSignaturesResource(uri);
     }
-    if (parsedUri === "skills/installed") {
-      return await this.getInstalledSkillsResource(uri);
-    }
     if (parsedUri === "bootstrap") {
       return await this.getBootstrapResource(uri);
     }
@@ -4640,19 +4518,11 @@ var ResourceManager = class {
     summary.push("## Available Tools", "");
     summary.push("| Tool | Purpose |");
     summary.push("|------|---------|");
-    summary.push("| `trie_scan` | Scan code with intelligent agent selection |");
+    summary.push("| `trie_fix` | Apply high-confidence fixes |");
     summary.push("| `trie_fix` | Generate fix recommendations |");
     summary.push("| `trie_memory` | Search issue history |");
     summary.push("| `trie_init` | Initialize bootstrap files |");
     summary.push("");
-    try {
-      const skills = await listInstalledSkills();
-      if (skills.length > 0) {
-        summary.push(`**Skills:** ${skills.length} installed (${skills.slice(0, 3).map((s) => s.name).join(", ")}${skills.length > 3 ? "..." : ""})`);
-        summary.push("");
-      }
-    } catch {
-    }
     summary.push("---", "", "# Detailed Context", "");
     const agentsMdPath = join4(getTrieDirectory(workDir), "AGENTS.md");
     try {
@@ -4735,41 +4605,6 @@ This information is automatically available to Claude Code, Cursor, and other AI
       }]
     };
   }
-  async getBuiltInSkillsResource(uri) {
-    await this.skillRegistry.loadCustomSkills();
-    const skills = this.skillRegistry.getSkillDescriptions();
-    return {
-      contents: [{
-        uri,
-        mimeType: "application/json",
-        text: JSON.stringify({
-          totalSkills: skills.length,
-          builtinCount: skills.filter((a) => !a.isCustom).length,
-          customCount: skills.filter((a) => a.isCustom).length,
-          skills: skills.map((a) => ({
-            name: a.name,
-            description: a.description,
-            type: a.isCustom ? "custom" : "builtin"
-          }))
-        }, null, 2)
-      }]
-    };
-  }
-  async getCustomSkillResource(uri, parsedUri) {
-    const skillName = parsedUri.replace("skills/custom/", "");
-    await this.skillRegistry.loadCustomSkills();
-    const metadata = this.skillRegistry.getCustomSkillMetadata(skillName);
-    if (!metadata) {
-      throw new Error(`Custom skill not found: ${skillName}`);
-    }
-    return {
-      contents: [{
-        uri,
-        mimeType: "application/json",
-        text: JSON.stringify(metadata, null, 2)
-      }]
-    };
-  }
   async getConfigResource(uri) {
     const config = await loadConfig();
     return {
@@ -4810,7 +4645,7 @@ This information is automatically available to Claude Code, Cursor, and other AI
           mimeType: "application/json",
           text: JSON.stringify({
             error: "No cache found. Run a scan first to build the cache.",
-            hint: "Use trie_scan to scan your codebase"
+            hint: "Run trie watch to analyze your codebase"
           }, null, 2)
         }]
       };
@@ -4833,33 +4668,6 @@ This information is automatically available to Claude Code, Cursor, and other AI
       }]
     };
   }
-  async getInstalledSkillsResource(uri) {
-    const skills = await listInstalledSkills();
-    const state = await loadContextState();
-    const skillsWithUsage = skills.map((skill) => {
-      const record = state.skills?.[skill.name];
-      return {
-        name: skill.name,
-        description: skill.description,
-        source: skill.installedFrom,
-        installedAt: skill.installedAt,
-        timesApplied: record?.timesApplied || 0,
-        appliedBy: record?.appliedBy || [],
-        lastApplied: record?.lastApplied
-      };
-    });
-    return {
-      contents: [{
-        uri,
-        mimeType: "application/json",
-        text: JSON.stringify({
-          totalSkills: skills.length,
-          skills: skillsWithUsage,
-          note: "Skills are capabilities applied by agents, not autonomous agents themselves."
-        }, null, 2)
-      }]
-    };
-  }
   async getScanReportResource(uri, parsedUri) {
     const fileName = parsedUri.replace("reports/", "");
     const reportPath = join4(getWorkingDirectory(void 0, true), "trie-reports", fileName);
@@ -5340,38 +5148,6 @@ var RequestHandlers = class {
           return await this.toolRegistry.getTool("register_agent").execute(args);
         case "watch":
           return await this.toolRegistry.getTool("watch").execute(args);
-        // Individual agent commands
-        case "security":
-          return await this.toolRegistry.getTool("agent").execute({ ...args, agent: "security" });
-        case "legal":
-          return await this.toolRegistry.getTool("agent").execute({ ...args, agent: "legal" });
-        case "accessibility":
-          return await this.toolRegistry.getTool("agent").execute({ ...args, agent: "accessibility" });
-        case "design":
-          return await this.toolRegistry.getTool("agent").execute({ ...args, agent: "design-engineer" });
-        case "architecture":
-          return await this.toolRegistry.getTool("agent").execute({ ...args, agent: "software-architect" });
-        case "bugs":
-          return await this.toolRegistry.getTool("agent").execute({ ...args, agent: "bug-finding" });
-        case "ux":
-          return await this.toolRegistry.getTool("agent").execute({ ...args, agent: "user-testing" });
-        case "types":
-          return await this.toolRegistry.getTool("agent").execute({ ...args, agent: "typecheck" });
-        case "devops":
-          return await this.toolRegistry.getTool("agent").execute({ ...args, agent: "devops" });
-        case "clean":
-          return await this.toolRegistry.getTool("agent").execute({ ...args, agent: "trie_clean" });
-        case "soc2":
-          return await this.toolRegistry.getTool("agent").execute({ ...args, agent: "soc2" });
-        // New agents
-        case "performance":
-        case "perf":
-          return await this.toolRegistry.getTool("agent").execute({ ...args, agent: "performance" });
-        case "e2e":
-          return await this.toolRegistry.getTool("agent").execute({ ...args, agent: "e2e" });
-        case "visual_qa":
-        case "visual":
-          return await this.toolRegistry.getTool("agent").execute({ ...args, agent: "visual-qa" });
         case "visual_qa_browser": {
           try {
             const result = await runVisualQA(args);
@@ -5414,31 +5190,6 @@ npx playwright install chromium
             };
           }
         }
-        case "data_flow":
-        case "dataflow":
-          return await this.toolRegistry.getTool("agent").execute({ ...args, agent: "data-flow" });
-        // Special agents
-        case "agent_smith":
-        case "agentsmith":
-        case "smith":
-          if (args?.clear_memory || args?.show_stats) {
-            return await this.handleAgentSmith(args);
-          }
-          return await this.toolRegistry.getTool("agent").execute({ ...args, agent: "agent-smith" });
-        case "super_reviewer":
-        case "superreviewer":
-        case "reviewer":
-          return await this.toolRegistry.getTool("agent").execute({ ...args, agent: "super-reviewer" });
-        // Custom skill tools (with backward-compatible agent aliases)
-        case "create_skill":
-        case "create_agent":
-          return await this.toolRegistry.getTool("create_skill").execute(args);
-        case "save_skill":
-        case "save_agent":
-          return await this.toolRegistry.getTool("save_skill").execute(args);
-        case "list_skills":
-        case "list_agents":
-          return await this.toolRegistry.getTool("list_skills").execute(args);
         case "pr_review":
           return await this.toolRegistry.getTool("pr_review").execute(args);
         case "project":
@@ -5540,45 +5291,16 @@ npx playwright install chromium
           "",
           "**Most common:**",
           "- `trie` (no args) \u2014 show this menu",
-          '- `trie` with `{ action: "scan", files?: [], directory?: "" }` \u2014 auto triage & scan',
-          '- `trie` with `{ action: "security", files?: [] }` \u2014 single-skill run (any skill name works)',
-          '- `trie` with `{ action: "agent_smith" }` \u2014 aggressive AI-pattern hunter',
-          "",
-          "**Other actions:**",
-          '- `action: "pr_review"` \u2014 interactive PR review',
           '- `action: "fix"` \u2014 high-confidence fixes',
           '- `action: "watch"` \u2014 start/stop/status autonomous watch',
+          '- `action: "pr_review"` \u2014 interactive PR review',
+          "",
+          "**Other actions:**",
           '- `action: "test"` \u2014 generate/coverage/suggest/run tests (requires `files` + `action`)',
           '- `action: "explain"` \u2014 explain code/issues/risks',
-          '- `action: "list_skills"` \u2014 list all skills (external + custom)',
           '- `action: "visual_qa_browser"` \u2014 screenshots for visual QA',
           "",
-          "**Built-in skills:**",
-          "`security`, `legal`, `accessibility`, `design`, `architecture`, `bugs`, `ux`, `types`, `devops`, `clean`, `soc2`, `performance`, `e2e`, `visual_qa`, `data_flow`",
-          "",
-          "**Special skills:**",
-          "`agent_smith` \u2014 35 vibe code hunters with cross-file detection",
-          "`super_reviewer` \u2014 Interactive PR review with cross-examination",
-          "",
-          "All commands accept `trie_` prefix (e.g., `trie_scan`, `trie_security`). Short names still work for compatibility."
-        ].join("\n")
-      }]
-    };
-  }
-  async handleAgentSmith(_smithArgs) {
-    return {
-      content: [{
-        type: "text",
-        text: [
-          "\u{1F916} Agent Smith functionality has been integrated into the decision ledger.",
-          "",
-          "The autonomous agent now:",
-          "- Extracts patterns automatically via `trie watch`",
-          "- Builds decision ledger from every change",
-          "- Predicts problems via `trie gotcha`",
-          "",
-          "Start the agent: `trie_watch start`",
-          "Query the ledger: `trie_gotcha`"
+          "All commands accept `trie_` prefix (e.g., `trie_fix`, `trie_watch`)."
         ].join("\n")
       }]
     };
@@ -5636,7 +5358,7 @@ var MCPServer = class {
   /**
    * Show startup banner
    */
-  showStartupBanner(skillCount, aiTool) {
+  showStartupBanner(toolCount, aiTool) {
     console.error(`
  \u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2557\u2588\u2588\u2588\u2588\u2588\u2588\u2557 \u2588\u2588\u2557\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2557
  \u255A\u2550\u2550\u2588\u2588\u2554\u2550\u2550\u255D\u2588\u2588\u2554\u2550\u2550\u2588\u2588\u2557\u2588\u2588\u2551\u2588\u2588\u2554\u2550\u2550\u2550\u2550\u255D
@@ -5644,21 +5366,19 @@ var MCPServer = class {
     \u2588\u2588\u2551   \u2588\u2588\u2554\u2550\u2550\u2588\u2588\u2557\u2588\u2588\u2551\u2588\u2588\u2554\u2550\u2550\u255D
     \u2588\u2588\u2551   \u2588\u2588\u2551  \u2588\u2588\u2551\u2588\u2588\u2551\u2588\u2588\u2588\u2588\u2588\u2588\u2588\u2557
     \u255A\u2550\u255D   \u255A\u2550\u255D  \u255A\u2550\u255D\u255A\u2550\u255D\u255A\u2550\u2550\u2550\u2550\u2550\u2550\u255D
-  Your central registry for Trie and its skills
+  Your central registry for Trie tools
 
   by Louis Kishfy
 
   Download the Trie workspace: https://www.trie.dev
   Follow me on X: https://x.com/louiskishfy
 
-  ${skillCount} skills ready | ${aiTool}
+  ${toolCount} tools ready | ${aiTool}
 
   Quick Start:
-    \u2022 "Scan this code" - Run all relevant skills
-    \u2022 "Run trie_security" - Security scan only
-    \u2022 "Run trie_soc2" - SOC 2 compliance check
-    \u2022 "Use trie_list_skills" - See all skills
-    \u2022 "Use trie_create_skill" - Make custom skill
+    \u2022 "Scan this code" - Run Trie analysis
+    \u2022 "Use trie" - Open the Trie menu
+    \u2022 "Use trie_fix" - Apply high-confidence fixes
 
   Ready.
 `);
@@ -5670,9 +5390,8 @@ var MCPServer = class {
     try {
       const aiTool = detectAITool();
       await loadConfig();
-      const registry = getSkillRegistry();
-      const skillCount = registry.getAllSkills().length;
-      this.showStartupBanner(skillCount, aiTool.name);
+      const toolCount = this.toolRegistry.getAllTools().length;
+      this.showStartupBanner(toolCount, aiTool.name);
       const transport = new StdioServerTransport();
       await this.server.connect(transport);
     } catch (error) {