@triedotdev/mcp 1.0.138 → 1.0.140

package/dist/chunk-7OJ6JIPL.js.map

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+{"version":3,"sources":["../src/utils/project-info.ts","../src/utils/context-state.ts","../src/bootstrap/stack-detector.ts","../src/bootstrap/files.ts"],"sourcesContent":["/**\n * Project Info Manager\n * \n * Manages the .trie/PROJECT.md file that stores user-defined project context.\n * Unlike AGENTS.md (auto-generated), PROJECT.md is fully user-controlled.\n */\n\nimport { readFile, writeFile, mkdir } from 'fs/promises';\nimport { existsSync } from 'fs';\nimport { join } from 'path';\nimport { getWorkingDirectory, getTrieDirectory } from './workspace.js';\n\nconst PROJECT_MD_PATH = 'PROJECT.md';\n\n/**\n * Default PROJECT.md template\n */\nexport function getProjectTemplate(): string {\n  return `# Project Information\n\n> This file stores important project context for AI assistants.\n> Edit freely - this file is yours, not auto-generated.\n> Available via MCP resource: \\`trie://project\\`\n\n---\n\n## Project Overview\n\n<!-- Describe your project's purpose and goals -->\n\n[Add project description here]\n\n---\n\n## Technology Stack\n\n<!-- List frameworks, languages, databases, cloud services, etc. -->\n\n- **Language:** \n- **Framework:** \n- **Database:** \n- **Hosting:** \n\n---\n\n## Architecture\n\n<!-- Key patterns, architectural decisions, and system design -->\n\n[Describe your architecture here]\n\n---\n\n## Coding Conventions\n\n<!-- Style guidelines, naming conventions, patterns to follow -->\n\n- \n- \n- \n\n---\n\n## Environment\n\n<!-- URLs, API endpoints, deployment info -->\n\n| Environment | URL | Notes |\n|-------------|-----|-------|\n| Development | | |\n| Staging | | |\n| Production | | |\n\n---\n\n## Team\n\n<!-- Ownership, contacts, responsibilities -->\n\n- **Owner:** \n- **Team:** \n\n---\n\n## Compliance\n\n<!-- HIPAA, SOC2, GDPR, PCI-DSS requirements if applicable -->\n\n- [ ] GDPR\n- [ ] SOC2\n- [ ] HIPAA\n- [ ] PCI-DSS\n\n---\n\n## AI Instructions\n\n<!-- Special instructions for AI assistants working on this project -->\n\nWhen working on this project, AI assistants should:\n\n1. \n2. \n3. \n\n---\n\n*This file is read by Trie agents and exposed via \\`trie://project\\` MCP resource.*\n*Edit this file to provide context to Claude Code, Cursor, GitHub Actions, and other AI tools.*\n`;\n}\n\n/**\n * Check if PROJECT.md exists\n */\nexport function projectInfoExists(workDir?: string): boolean {\n  const dir = workDir || getWorkingDirectory(undefined, true);\n  const projectPath = join(getTrieDirectory(dir), PROJECT_MD_PATH);\n  return existsSync(projectPath);\n}\n\n/**\n * Load PROJECT.md content\n */\nexport async function loadProjectInfo(workDir?: string): Promise<string | null> {\n  const dir = workDir || getWorkingDirectory(undefined, true);\n  const projectPath = join(getTrieDirectory(dir), PROJECT_MD_PATH);\n  \n  try {\n    if (!existsSync(projectPath)) {\n      return null;\n    }\n    return await readFile(projectPath, 'utf-8');\n  } catch {\n    return null;\n  }\n}\n\n/**\n * Save PROJECT.md content\n */\nexport async function saveProjectInfo(content: string, workDir?: string): Promise<void> {\n  const dir = workDir || getWorkingDirectory(undefined, true);\n  const trieDir = getTrieDirectory(dir);\n  const projectPath = join(trieDir, PROJECT_MD_PATH);\n  \n  // Ensure .trie directory exists\n  await mkdir(trieDir, { recursive: true });\n  \n  await writeFile(projectPath, content, 'utf-8');\n}\n\n/**\n * Initialize PROJECT.md with template\n */\nexport async function initProjectInfo(workDir?: string): Promise<{ created: boolean; path: string }> {\n  const dir = workDir || getWorkingDirectory(undefined, true);\n  const projectPath = join(getTrieDirectory(dir), PROJECT_MD_PATH);\n  \n  if (existsSync(projectPath)) {\n    return { created: false, path: projectPath };\n  }\n  \n  await saveProjectInfo(getProjectTemplate(), dir);\n  return { created: true, path: projectPath };\n}\n\n/**\n * Get a specific section from PROJECT.md\n */\nexport async function getProjectSection(sectionName: string, workDir?: string): Promise<string | null> {\n  const content = await loadProjectInfo(workDir);\n  if (!content) return null;\n  \n  // Find section by header\n  const sectionRegex = new RegExp(\n    `## ${escapeRegex(sectionName)}\\\\s*\\\\n([\\\\s\\\\S]*?)(?=\\\\n## |\\\\n---\\\\s*$|$)`,\n    'i'\n  );\n  \n  const match = content.match(sectionRegex);\n  if (match?.[1]) {\n    return match[1].trim();\n  }\n  \n  return null;\n}\n\n/**\n * Update a specific section in PROJECT.md\n */\nexport async function updateProjectSection(\n  sectionName: string, \n  newContent: string, \n  workDir?: string\n): Promise<boolean> {\n  let content = await loadProjectInfo(workDir);\n  \n  if (!content) {\n    // Initialize with template first\n    await initProjectInfo(workDir);\n    content = await loadProjectInfo(workDir);\n    if (!content) return false;\n  }\n  \n  // Find and replace section content\n  const sectionRegex = new RegExp(\n    `(## ${escapeRegex(sectionName)}\\\\s*\\\\n)([\\\\s\\\\S]*?)((?=\\\\n## )|(?=\\\\n---\\\\s*$)|$)`,\n    'i'\n  );\n  \n  if (content.match(sectionRegex)) {\n    const updatedContent = content.replace(sectionRegex, `$1\\n${newContent}\\n\\n$3`);\n    await saveProjectInfo(updatedContent, workDir);\n    return true;\n  }\n  \n  return false;\n}\n\n/**\n * Append content to a section\n */\nexport async function appendToSection(\n  sectionName: string,\n  contentToAdd: string,\n  workDir?: string\n): Promise<boolean> {\n  const currentContent = await getProjectSection(sectionName, workDir);\n  if (currentContent === null) return false;\n  \n  const newContent = currentContent + '\\n' + contentToAdd;\n  return updateProjectSection(sectionName, newContent, workDir);\n}\n\n/**\n * Get all section names from PROJECT.md\n */\nexport async function getProjectSections(workDir?: string): Promise<string[]> {\n  const content = await loadProjectInfo(workDir);\n  if (!content) return [];\n  \n  const sectionRegex = /^## (.+)$/gm;\n  const sections: string[] = [];\n  let match;\n  \n  while ((match = sectionRegex.exec(content)) !== null) {\n    if (match[1]) {\n      sections.push(match[1].trim());\n    }\n  }\n  \n  return sections;\n}\n\n/**\n * Get project info as structured data (for JSON responses)\n */\nexport async function getProjectInfoStructured(workDir?: string): Promise<{\n  exists: boolean;\n  path: string;\n  sections: Record<string, string>;\n  raw: string | null;\n}> {\n  const dir = workDir || getWorkingDirectory(undefined, true);\n  const projectPath = join(getTrieDirectory(dir), PROJECT_MD_PATH);\n  const content = await loadProjectInfo(dir);\n  \n  if (!content) {\n    return {\n      exists: false,\n      path: projectPath,\n      sections: {},\n      raw: null,\n    };\n  }\n  \n  const sectionNames = await getProjectSections(dir);\n  const sections: Record<string, string> = {};\n  \n  for (const name of sectionNames) {\n    const sectionContent = await getProjectSection(name, dir);\n    if (sectionContent) {\n      sections[name] = sectionContent;\n    }\n  }\n  \n  return {\n    exists: true,\n    path: projectPath,\n    sections,\n    raw: content,\n  };\n}\n\n/**\n * Escape special regex characters\n */\nfunction escapeRegex(str: string): string {\n  return str.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\$&');\n}\n","/**\n * Context State Manager\n * \n * Manages the .trie/AGENTS.md file that provides context to AI coding assistants.\n * Updates automatically when agents run to keep context current.\n * Also integrates with issue memory and cross-project tracking.\n * \n * Phase 1 Hardening:\n * - Atomic writes to prevent corruption\n */\n\nimport { readFile, mkdir } from 'fs/promises';\nimport { existsSync } from 'fs';\nimport { join, basename } from 'path';\nimport { getWorkingDirectory, getTrieDirectory } from './workspace.js';\nimport type { AgentResult } from '../types/index.js';\nimport type { SkillRecord } from '../types/external-skill.js';\nimport { loadProjectInfo, projectInfoExists } from './project-info.js';\nimport { storeIssues, autoResolveIssues, getIssueHash } from '../memory/issue-store.js';\nimport { recordToGlobalMemory, updateGlobalMemoryMd } from '../memory/global-memory.js';\nimport { atomicWriteJSON, atomicWriteFile } from './atomic-write.js';\n\nexport interface ScanSummary {\n  timestamp: string;\n  agents: string[];\n  filesScanned: number;\n  issues: {\n    critical: number;\n    serious: number;\n    moderate: number;\n    low: number;\n    total: number;\n  };\n  duration: number;\n  hotFiles: Array<{ file: string; issueCount: number }>;\n}\n\nexport interface ContextState {\n  lastScan: ScanSummary | null;\n  activePriorities: string[];\n  contextSignals: Record<string, boolean>;\n  agentStatus: Record<string, {\n    lastRun: string | null;\n    issuesFound: number;\n    skillsApplied?: string[];\n  }>;\n  scanHistory: ScanSummary[];\n  customAgents: string[];\n  skills: Record<string, SkillRecord>;\n  environment?: string;\n}\n\nconst AGENTS_MD_PATH = 'AGENTS.md';\nconst STATE_JSON_PATH = 'state.json';\n\n/**\n * Load current context state\n */\nexport async function loadContextState(): Promise<ContextState> {\n  const workDir = getWorkingDirectory(undefined, true);\n  const statePath = join(getTrieDirectory(workDir), STATE_JSON_PATH);\n  const defaults = getDefaultState();\n  \n  try {\n    if (existsSync(statePath)) {\n      const content = await readFile(statePath, 'utf-8');\n      const loaded = JSON.parse(content);\n      const { healthScore: _dropped, ...loadedRest } = loaded;\n      // Merge with defaults to ensure new fields exist (omit legacy healthScore)\n      return {\n        ...defaults,\n        ...loadedRest,\n        skills: loaded.skills || defaults.skills,\n      };\n    }\n  } catch {\n    // Return default state\n  }\n  \n  return defaults;\n}\n\n/**\n * Save context state using atomic write\n */\nexport async function saveContextState(state: ContextState): Promise<void> {\n  const workDir = getWorkingDirectory(undefined, true);\n  const trieDir = getTrieDirectory(workDir);\n  const statePath = join(trieDir, STATE_JSON_PATH);\n  \n  // Ensure directory exists\n  await mkdir(trieDir, { recursive: true });\n  \n  // Use atomic write to prevent corruption\n  await atomicWriteJSON(statePath, state);\n}\n\n/**\n * Update context state after a scan\n */\nexport async function updateContextAfterScan(\n  results: AgentResult[],\n  filesScanned: number,\n  contextSignals: Record<string, boolean>,\n  duration: number,\n  scannedFiles?: string[]\n): Promise<void> {\n  const state = await loadContextState();\n  const workDir = getWorkingDirectory(undefined, true);\n  const now = new Date().toISOString();\n  \n  // Calculate issue counts\n  const allIssues = results.flatMap(r => r.issues);\n  const issueCounts = {\n    critical: allIssues.filter(i => i.severity === 'critical').length,\n    serious: allIssues.filter(i => i.severity === 'serious').length,\n    moderate: allIssues.filter(i => i.severity === 'moderate').length,\n    low: allIssues.filter(i => i.severity === 'low').length,\n    total: allIssues.length,\n  };\n  \n  // Find hot files\n  const fileIssueMap = new Map<string, number>();\n  for (const issue of allIssues) {\n    const count = fileIssueMap.get(issue.file) || 0;\n    fileIssueMap.set(issue.file, count + 1);\n  }\n  const hotFiles = Array.from(fileIssueMap.entries())\n    .sort((a, b) => b[1] - a[1])\n    .slice(0, 10)\n    .map(([file, issueCount]) => ({ file, issueCount }));\n  \n  // Create scan summary\n  const scanSummary: ScanSummary = {\n    timestamp: now,\n    agents: results.map(r => r.agent),\n    filesScanned,\n    issues: issueCounts,\n    duration,\n    hotFiles,\n  };\n  \n  // Update agent status\n  for (const result of results) {\n    state.agentStatus[result.agent] = {\n      lastRun: now,\n      issuesFound: result.issues.length,\n    };\n  }\n  \n  // Update priorities based on issues\n  state.activePriorities = generatePriorities(issueCounts, contextSignals);\n  \n  // Update context signals\n  state.contextSignals = { ...state.contextSignals, ...contextSignals };\n  \n  // Update scan history (keep last 20)\n  state.scanHistory = [scanSummary, ...state.scanHistory.slice(0, 19)];\n  state.lastScan = scanSummary;\n  \n  // Save state\n  await saveContextState(state);\n  \n  // Update AGENTS.md\n  await updateAgentsMd(state);\n  \n  // Store issues to memory\n  const projectName = basename(workDir);\n  if (allIssues.length > 0) {\n    try {\n      await storeIssues(allIssues, projectName, workDir);\n      await recordToGlobalMemory(allIssues, projectName, workDir);\n      await updateGlobalMemoryMd();\n    } catch {\n      // Memory storage is non-critical, don't fail the scan\n    }\n  }\n  \n  // Auto-resolve issues that are no longer detected in scanned files\n  if (scannedFiles && scannedFiles.length > 0) {\n    try {\n      // Build set of hashes from current scan\n      const currentHashes = new Set(allIssues.map(issue => getIssueHash(issue)));\n      const { resolved } = await autoResolveIssues(currentHashes, scannedFiles, workDir);\n      if (resolved > 0) {\n        // Log auto-resolution in non-interactive mode\n        const { isInteractiveMode } = await import('./progress.js');\n        if (!isInteractiveMode()) {\n          console.error(`   ✓ Auto-resolved ${resolved} issue${resolved > 1 ? 's' : ''} no longer detected`);\n        }\n      }\n    } catch {\n      // Auto-resolution is non-critical\n    }\n  }\n}\n\n/**\n * Update the AGENTS.md file with current state\n */\nasync function updateAgentsMd(state: ContextState): Promise<void> {\n  const workDir = getWorkingDirectory(undefined, true);\n  const mdPath = join(getTrieDirectory(workDir), AGENTS_MD_PATH);\n  \n  let content: string;\n  try {\n    content = await readFile(mdPath, 'utf-8');\n  } catch {\n    // Use template if file doesn't exist\n    content = getAgentsMdTemplate();\n  }\n  \n  // Update sections\n  content = updateSection(content, 'Project State', generateProjectStateTable(state));\n  content = updateSection(content, 'Active Priorities', generatePrioritiesList(state));\n  content = updateSection(content, 'Agent Status', generateAgentStatusTable(state));\n  content = updateSection(content, 'Recent Scan History', generateScanHistoryTable(state));\n  content = updateSection(content, 'Context Signals Detected', generateContextSignals(state));\n  content = updateSection(content, 'Risk Assessment', generateRiskAssessment(state));\n  content = updateSection(content, 'Hot Files', generateHotFilesSection(state));\n  \n  // Update last updated timestamp\n  content = content.replace(\n    /Last updated:.*$/m,\n    `Last updated: ${new Date().toISOString()}`\n  );\n  \n  // Use atomic write to prevent corruption\n  await atomicWriteFile(mdPath, content);\n}\n\n/**\n * Update a specific section in the markdown\n */\nfunction updateSection(content: string, sectionName: string, newContent: string): string {\n  // Look for the section header and replace content until the next section\n  const sectionRegex = new RegExp(\n    `(### ${sectionName}[\\\\s\\\\S]*?)(?=###|---|\\n## |$)`,\n    'g'\n  );\n  \n  const replacement = `### ${sectionName}\\n${newContent}\\n\\n`;\n  \n  if (content.match(sectionRegex)) {\n    return content.replace(sectionRegex, replacement);\n  }\n  \n  // Section doesn't exist, don't add it\n  return content;\n}\n\n/**\n * Generate the project state table\n */\nfunction generateProjectStateTable(state: ContextState): string {\n  const lastScan = state.lastScan;\n  const lastScanDate = lastScan ? new Date(lastScan.timestamp).toLocaleString() : 'Never';\n  const criticalCount = lastScan?.issues.critical ?? 0;\n  const totalTasks = lastScan?.issues.total ?? 0;\n  \n  return `| Metric | Value | Updated |\n|--------|-------|---------|\n| Last Scan | ${lastScanDate} | ${lastScan ? 'Auto' : '-'} |\n| Critical Issues | ${criticalCount} | ${lastScan ? 'Auto' : '-'} |\n| Open Tasks | ${totalTasks} | ${lastScan ? 'Auto' : '-'} |`;\n}\n\n/**\n * Generate priorities list\n */\nfunction generatePrioritiesList(state: ContextState): string {\n  if (state.activePriorities.length === 0) {\n    return '_No active priorities. Run a scan to identify issues._';\n  }\n  \n  return state.activePriorities\n    .map((p, i) => `${i + 1}. ${p}`)\n    .join('\\n');\n}\n\n/**\n * Generate priorities based on scan results\n */\nfunction generatePriorities(\n  issues: { critical: number; serious: number; moderate: number; low: number },\n  contextSignals: Record<string, boolean>\n): string[] {\n  const priorities: string[] = [];\n  \n  if (issues.critical > 0) {\n    priorities.push(`Fix ${issues.critical} critical security issue${issues.critical > 1 ? 's' : ''} immediately`);\n  }\n  \n  if (issues.serious > 0) {\n    priorities.push(`Address ${issues.serious} serious issue${issues.serious > 1 ? 's' : ''} before deployment`);\n  }\n  \n  if (contextSignals.touchesAuth && issues.critical === 0) {\n    priorities.push('Auth code reviewed - continue monitoring');\n  }\n  \n  if (contextSignals.touchesPayments) {\n    priorities.push('💳 Payment code detected - ensure PCI compliance');\n  }\n  \n  if (issues.moderate > 5) {\n    priorities.push(`Schedule time to address ${issues.moderate} moderate issues`);\n  }\n  \n  if (priorities.length === 0) {\n    priorities.push('No critical issues - focus on feature development');\n  }\n  \n  return priorities.slice(0, 5);\n}\n\n/**\n * Generate agent status table\n */\nfunction generateAgentStatusTable(state: ContextState): string {\n  const builtInAgents = [\n    'security', 'legal', 'accessibility', 'bugs',\n    'design', 'architecture', 'performance', 'devops', 'soc2',\n    'e2e', 'typecheck', 'visual-qa', 'data-flow'\n  ];\n  \n  let table = `| Agent | Status | Last Run | Issues Found |\n|-------|--------|----------|--------------|`;\n  \n  for (const agent of builtInAgents) {\n    const status = state.agentStatus[agent];\n    const lastRun = status?.lastRun \n      ? new Date(status.lastRun).toLocaleDateString()\n      : 'Never';\n    const issues = status?.issuesFound ?? '-';\n    const statusEmoji = status ? '✅' : '⏸️';\n    \n    table += `\\n| ${agent} | ${statusEmoji} Ready | ${lastRun} | ${issues} |`;\n  }\n  \n  return table;\n}\n\n/**\n * Generate scan history table\n */\nfunction generateScanHistoryTable(state: ContextState): string {\n  if (state.scanHistory.length === 0) {\n    return `| Date | Agents | Files | Issues | Duration |\n|------|--------|-------|--------|----------|\n| - | - | - | - | - |`;\n  }\n  \n  let table = `| Date | Agents | Files | Issues | Duration |\n|------|--------|-------|--------|----------|`;\n  \n  for (const scan of state.scanHistory.slice(0, 10)) {\n    const date = new Date(scan.timestamp).toLocaleDateString();\n    const agents = scan.agents.slice(0, 3).join(', ') + (scan.agents.length > 3 ? '...' : '');\n    const duration = `${(scan.duration / 1000).toFixed(1)}s`;\n    \n    table += `\\n| ${date} | ${agents} | ${scan.filesScanned} | ${scan.issues.total} | ${duration} |`;\n  }\n  \n  return table;\n}\n\n/**\n * Generate context signals section\n */\nfunction generateContextSignals(state: ContextState): string {\n  const signals = [\n    'touchesAuth',\n    'touchesPayments', \n    'touchesUserData',\n    'touchesAPI',\n    'touchesDatabase',\n    'touchesCrypto'\n  ];\n  \n  return signals\n    .map(s => {\n      const value = state.contextSignals[s];\n      const emoji = value === true ? '✅' : value === false ? '❌' : '❓';\n      return `- \\`${s}\\`: ${emoji} ${value === undefined ? 'Unknown' : value ? 'Yes' : 'No'}`;\n    })\n    .join('\\n');\n}\n\n/**\n * Generate risk assessment section\n */\nfunction generateRiskAssessment(state: ContextState): string {\n  if (state.lastScan === null) {\n    return `- Overall Risk: Unknown\n- Confidence: 0%`;\n  }\n\n  const { critical, serious, total } = state.lastScan.issues;\n  let riskLevel: string;\n  let confidence: number;\n\n  if (critical > 0) {\n    riskLevel = '🔴 Critical';\n    confidence = 90;\n  } else if (serious > 2 || total > 20) {\n    riskLevel = '🟠 High';\n    confidence = 80;\n  } else if (serious > 0 || total > 10) {\n    riskLevel = '🟡 Medium';\n    confidence = 85;\n  } else {\n    riskLevel = '🟢 Low';\n    confidence = 95;\n  }\n\n  return `- Overall Risk: ${riskLevel}\n- Confidence: ${confidence}%`;\n}\n\n/**\n * Generate hot files section\n */\nfunction generateHotFilesSection(state: ContextState): string {\n  if (!state.lastScan || state.lastScan.hotFiles.length === 0) {\n    return '_Run a scan to identify hot files._';\n  }\n  \n  return state.lastScan.hotFiles\n    .map(f => `- \\`${f.file}\\` - ${f.issueCount} issue${f.issueCount > 1 ? 's' : ''}`)\n    .join('\\n');\n}\n\n/**\n * Get default state\n */\nfunction getDefaultState(): ContextState {\n  return {\n    lastScan: null,\n    activePriorities: [\n      'Initial setup required - run first scan with `trie scan`',\n      'Configure agents in `.trie/config.json`',\n      'Set up CI/CD integration'\n    ],\n    contextSignals: {},\n    agentStatus: {},\n    scanHistory: [],\n    customAgents: [],\n    skills: {},\n    environment: detectEnvironment(),\n  };\n}\n\n/**\n * Detect the current execution environment\n */\nexport function detectEnvironment(): string {\n  if (process.env.GITHUB_ACTIONS) return 'github-actions';\n  if (process.env.GITLAB_CI) return 'gitlab-ci';\n  if (process.env.CI) return 'ci';\n  const parent = process.env._ || '';\n  if (parent.includes('cursor')) return 'cursor';\n  if (parent.includes('claude')) return 'claude-code';\n  return 'cli';\n}\n\n/**\n * Record skill installation in context state\n */\nexport async function recordSkillInstalled(params: {\n  name: string;\n  source: string;\n}): Promise<void> {\n  const state = await loadContextState();\n  state.skills[params.name] = {\n    source: params.source,\n    installedAt: new Date().toISOString(),\n    timesApplied: 0,\n    appliedBy: [],\n  };\n  await saveContextState(state);\n}\n\n/**\n * Record skill usage by an agent\n */\nexport async function recordSkillUsage(params: {\n  skillNames: string[];\n  agentName: string;\n}): Promise<void> {\n  const state = await loadContextState();\n  const now = new Date().toISOString();\n  \n  for (const skillName of params.skillNames) {\n    const skillRecord = state.skills[skillName];\n    if (skillRecord) {\n      skillRecord.timesApplied++;\n      skillRecord.lastApplied = now;\n      if (!skillRecord.appliedBy.includes(params.agentName)) {\n        skillRecord.appliedBy.push(params.agentName);\n      }\n    }\n  }\n  \n  const agentStatus = state.agentStatus[params.agentName];\n  if (agentStatus) {\n    agentStatus.skillsApplied = params.skillNames;\n  }\n  \n  await saveContextState(state);\n}\n\n/**\n * Get the AGENTS.md template\n */\nfunction getAgentsMdTemplate(): string {\n  return `# Trie Agent Context\n\n> **Auto-generated file** - Updated automatically when agents run.\n> Last updated: Never (initial state)\n\nThis file provides prioritized context for all AI coding assistants working with this codebase.\nAgents should read this file first and update it after completing scans.\n\n---\n\n## Quick Context (Read First)\n\n### Project State\n| Metric | Value | Updated |\n|--------|-------|---------|\n| Last Scan | Never | - |\n| Critical Issues | 0 | - |\n| Open Tasks | 0 | - |\n| Health Score | Unknown | - |\n\n### Active Priorities\n1. Initial setup required - run first scan with \\`trie scan\\`\n2. Configure agents in \\`.trie/config.json\\`\n3. Set up CI/CD integration\n\n### Hot Files\n_Run a scan to identify hot files._\n\n---\n\n## Agent Status\n\n### Agent Status\n| Agent | Status | Last Run | Issues Found |\n|-------|--------|----------|--------------|\n| security | Ready | Never | - |\n| bugs | Ready | Never | - |\n\n### Recent Scan History\n| Date | Agents | Files | Issues | Duration |\n|------|--------|-------|--------|----------|\n| - | - | - | - | - |\n\n---\n\n## Context Analysis\n\n### Context Signals Detected\n- \\`touchesAuth\\`: Unknown\n- \\`touchesPayments\\`: Unknown\n- \\`touchesUserData\\`: Unknown\n- \\`touchesAPI\\`: Unknown\n- \\`touchesDatabase\\`: Unknown\n- \\`touchesCrypto\\`: Unknown\n\n### Risk Assessment\n- Overall Risk: Unknown\n- Confidence: 0%\n\n---\n\n*This file is maintained by Trie agents. Manual edits will be preserved in non-auto sections.*\n`;\n}\n\n/**\n * Add custom skill to context state\n */\nexport async function addCustomAgentToContext(agentName: string): Promise<void> {\n  const state = await loadContextState();\n  \n  if (!state.customAgents.includes(agentName)) {\n    state.customAgents.push(agentName);\n    await saveContextState(state);\n  }\n}\n\n/**\n * Get context state for AI assistants (formatted summary)\n */\nexport async function getContextForAI(): Promise<string> {\n  const state = await loadContextState();\n  const workDir = getWorkingDirectory(undefined, true);\n  \n  const lines: string[] = [];\n  \n  // Include PROJECT.md content first (user-defined context takes priority)\n  if (projectInfoExists(workDir)) {\n    const projectInfo = await loadProjectInfo(workDir);\n    if (projectInfo) {\n      lines.push(projectInfo);\n      lines.push('');\n      lines.push('---');\n      lines.push('');\n    }\n  }\n  \n  // Add Trie scan context\n  lines.push(\n    '## Trie Scan Context',\n    '',\n    `**Last Scan:** ${state.lastScan ? new Date(state.lastScan.timestamp).toLocaleString() : 'Never'}`,\n    '',\n    '**Active Priorities:**',\n    ...state.activePriorities.map(p => `- ${p}`),\n    ''\n  );\n  \n  if (state.lastScan) {\n    lines.push(\n      '**Recent Issues:**',\n      `- Critical: ${state.lastScan.issues.critical}`,\n      `- Serious: ${state.lastScan.issues.serious}`,\n      `- Moderate: ${state.lastScan.issues.moderate}`,\n      `- Low: ${state.lastScan.issues.low}`,\n      ''\n    );\n    \n    if (state.lastScan.hotFiles.length > 0) {\n      lines.push(\n        '**Hot Files (most issues):**',\n        ...state.lastScan.hotFiles.slice(0, 5).map(f => `- ${f.file}: ${f.issueCount} issues`),\n        ''\n      );\n    }\n  }\n  \n  return lines.join('\\n');\n}\n","/**\n * Stack Detector\n * \n * Detects project technology stack from config files.\n * Used by bootstrap system to suggest skills and agents.\n * \n * Skills data sourced from:\n * - https://skills.sh (leaderboard)\n * - https://github.com/anthropics/skills\n * - Partner repositories (Expo, Stripe, Supabase, etc.)\n */\n\nimport { readFile } from 'fs/promises';\nimport { existsSync } from 'fs';\nimport { join } from 'path';\n\nexport interface DetectedStack {\n  framework?: string;\n  language?: string;\n  database?: string;\n  auth?: string;\n  packageManager?: string;\n  suggestedSkills: string[];\n  suggestedAgents: string[];\n  dependencies: Set<string>;\n}\n\n/**\n * Comprehensive dependency-to-skill mappings\n * Format: dependency name -> array of skill identifiers\n */\nconst SKILL_MAPPINGS: Record<string, string[]> = {\n  // Frontend Frameworks - React/Next.js\n  'next': [\n    'vercel-labs/agent-skills vercel-react-best-practices',\n    'vercel-labs/agent-skills web-design-guidelines',\n    'anthropics/skills frontend-design',\n    'wshobson/agents nextjs-app-router-patterns',\n  ],\n  'react': [\n    'vercel-labs/agent-skills vercel-react-best-practices',\n    'anthropics/skills frontend-design',\n    'wshobson/agents react-state-management',\n  ],\n\n  // Vue/Nuxt Ecosystem\n  'vue': [\n    'hyf0/vue-skills vue-best-practices',\n    'hyf0/vue-skills pinia-best-practices',\n    'hyf0/vue-skills vueuse-best-practices',\n    'onmax/nuxt-skills vue',\n  ],\n  'nuxt': [\n    'onmax/nuxt-skills nuxt',\n    'onmax/nuxt-skills nuxt-ui',\n    'onmax/nuxt-skills nuxt-content',\n    'onmax/nuxt-skills nuxt-modules',\n    'onmax/nuxt-skills nuxt-better-auth',\n    'onmax/nuxt-skills nuxthub',\n  ],\n  'pinia': [\n    'hyf0/vue-skills pinia-best-practices',\n  ],\n  '@vueuse/core': [\n    'hyf0/vue-skills vueuse-best-practices',\n    'onmax/nuxt-skills vueuse',\n  ],\n\n  // Mobile - Expo\n  'expo': [\n    'expo/skills building-native-ui',\n    'expo/skills upgrading-expo',\n    'expo/skills native-data-fetching',\n    'expo/skills expo-dev-client',\n    'expo/skills expo-deployment',\n    'expo/skills expo-api-routes',\n    'expo/skills expo-tailwind-setup',\n    'expo/skills expo-cicd-workflows',\n    'expo/skills use-dom',\n  ],\n\n  // Mobile - React Native\n  'react-native': [\n    'callstackincubator/agent-skills react-native-best-practices',\n    'wshobson/agents react-native-architecture',\n  ],\n\n  // Backend Frameworks\n  '@nestjs/core': [\n    'kadajett/agent-nestjs-skills nestjs-best-practices',\n  ],\n  'nestjs': [\n    'kadajett/agent-nestjs-skills nestjs-best-practices',\n  ],\n  'elysia': [\n    'elysiajs/skills elysiajs',\n  ],\n  'hono': [\n    'elysiajs/skills elysiajs',\n  ],\n\n  // Database/BaaS\n  '@supabase/supabase-js': [\n    'supabase/agent-skills supabase-postgres-best-practices',\n  ],\n  'convex': [\n    'waynesutton/convexskills convex-best-practices',\n  ],\n  'pg': [\n    'wshobson/agents postgresql-table-design',\n  ],\n  'postgres': [\n    'wshobson/agents postgresql-table-design',\n  ],\n\n  // Auth\n  'better-auth': [\n    'better-auth/skills better-auth-best-practices',\n    'better-auth/skills create-auth-skill',\n  ],\n\n  // Payments\n  'stripe': [\n    'stripe/ai stripe-best-practices',\n  ],\n  '@stripe/stripe-js': [\n    'stripe/ai stripe-best-practices',\n  ],\n\n  // Media/Graphics\n  'remotion': [\n    'remotion-dev/skills remotion-best-practices',\n  ],\n  'three': [\n    'cloudai-x/threejs-skills threejs-fundamentals',\n    'cloudai-x/threejs-skills threejs-animation',\n    'cloudai-x/threejs-skills threejs-materials',\n    'cloudai-x/threejs-skills threejs-shaders',\n    'cloudai-x/threejs-skills threejs-lighting',\n    'cloudai-x/threejs-skills threejs-geometry',\n    'cloudai-x/threejs-skills threejs-textures',\n    'cloudai-x/threejs-skills threejs-loaders',\n    'cloudai-x/threejs-skills threejs-interaction',\n    'cloudai-x/threejs-skills threejs-postprocessing',\n  ],\n\n  // UI Libraries\n  'tailwindcss': [\n    'wshobson/agents tailwind-design-system',\n    'jezweb/claude-skills tailwind-v4-shadcn',\n    'wshobson/agents responsive-design',\n  ],\n  '@shadcn/ui': [\n    'giuseppe-trisciuoglio/developer-kit shadcn-ui',\n  ],\n  'shadcn': [\n    'giuseppe-trisciuoglio/developer-kit shadcn-ui',\n  ],\n  '@radix-ui/react-slot': [\n    'onmax/nuxt-skills reka-ui',\n  ],\n\n  // State Management\n  '@tanstack/react-query': [\n    'jezweb/claude-skills tanstack-query',\n  ],\n\n  // Testing\n  'playwright': [\n    'anthropics/skills webapp-testing',\n    'wshobson/agents e2e-testing-patterns',\n  ],\n  'puppeteer': [\n    'anthropics/skills webapp-testing',\n  ],\n  'vitest': [\n    'wshobson/agents e2e-testing-patterns',\n  ],\n  'jest': [\n    'wshobson/agents e2e-testing-patterns',\n  ],\n\n  // DevTools/MCP\n  '@modelcontextprotocol/sdk': [\n    'anthropics/skills mcp-builder',\n  ],\n\n  // Security\n  'semgrep': [\n    'trailofbits/skills semgrep',\n  ],\n\n  // Monorepos\n  'turbo': [\n    'wshobson/agents monorepo-management',\n  ],\n  'nx': [\n    'wshobson/agents monorepo-management',\n  ],\n  'lerna': [\n    'wshobson/agents monorepo-management',\n  ],\n\n  // TypeScript (handled separately based on tsconfig.json)\n  'typescript': [\n    'wshobson/agents typescript-advanced-types',\n  ],\n};\n\n/**\n * Skills categories for user opt-in browsing\n */\nexport const SKILL_CATEGORIES: Record<string, string[]> = {\n  documents: [\n    'anthropics/skills pdf',\n    'anthropics/skills xlsx',\n    'anthropics/skills pptx',\n    'anthropics/skills docx',\n    'anthropics/skills doc-coauthoring',\n  ],\n  design: [\n    'anthropics/skills canvas-design',\n    'anthropics/skills theme-factory',\n    'anthropics/skills web-artifacts-builder',\n    'anthropics/skills algorithmic-art',\n    'anthropics/skills brand-guidelines',\n    'anthropics/skills slack-gif-creator',\n    'nextlevelbuilder/ui-ux-pro-max ui-ux-pro-max',\n    'superdesigndev/superdesign-skill superdesign',\n    'wshobson/agents design-system-patterns',\n  ],\n  marketing: [\n    'coreyhaines31/marketingskills seo-audit',\n    'coreyhaines31/marketingskills copywriting',\n    'coreyhaines31/marketingskills marketing-psychology',\n    'coreyhaines31/marketingskills programmatic-seo',\n    'coreyhaines31/marketingskills marketing-ideas',\n    'coreyhaines31/marketingskills copy-editing',\n    'coreyhaines31/marketingskills pricing-strategy',\n    'coreyhaines31/marketingskills social-content',\n    'coreyhaines31/marketingskills launch-strategy',\n    'coreyhaines31/marketingskills page-cro',\n    'coreyhaines31/marketingskills competitor-alternatives',\n    'coreyhaines31/marketingskills analytics-tracking',\n    'coreyhaines31/marketingskills schema-markup',\n    'coreyhaines31/marketingskills onboarding-cro',\n    'coreyhaines31/marketingskills email-sequence',\n    'coreyhaines31/marketingskills paid-ads',\n    'coreyhaines31/marketingskills signup-flow-cro',\n    'coreyhaines31/marketingskills free-tool-strategy',\n    'coreyhaines31/marketingskills form-cro',\n    'coreyhaines31/marketingskills paywall-upgrade-cro',\n    'coreyhaines31/marketingskills referral-program',\n    'coreyhaines31/marketingskills popup-cro',\n    'coreyhaines31/marketingskills ab-test-setup',\n  ],\n  development: [\n    'obra/superpowers brainstorming',\n    'obra/superpowers test-driven-development',\n    'obra/superpowers systematic-debugging',\n    'obra/superpowers writing-plans',\n    'obra/superpowers executing-plans',\n    'obra/superpowers verification-before-completion',\n    'obra/superpowers using-superpowers',\n    'obra/superpowers subagent-driven-development',\n    'obra/superpowers requesting-code-review',\n    'obra/superpowers writing-skills',\n    'obra/superpowers dispatching-parallel-agents',\n    'obra/superpowers receiving-code-review',\n    'obra/superpowers using-git-worktrees',\n    'obra/superpowers finishing-a-development-branch',\n    'wshobson/agents code-review-excellence',\n    'wshobson/agents api-design-principles',\n    'wshobson/agents architecture-patterns',\n    'wshobson/agents error-handling-patterns',\n    'wshobson/agents nodejs-backend-patterns',\n    'wshobson/agents microservices-patterns',\n    'wshobson/agents modern-javascript-patterns',\n    'wshobson/agents web-component-design',\n    'wshobson/agents async-python-patterns',\n    'wshobson/agents python-testing-patterns',\n    'boristane/agent-skills logging-best-practices',\n  ],\n  productivity: [\n    'softaworks/agent-toolkit daily-meeting-update',\n    'softaworks/agent-toolkit agent-md-refactor',\n    'softaworks/agent-toolkit session-handoff',\n    'softaworks/agent-toolkit meme-factory',\n    'softaworks/agent-toolkit qa-test-planner',\n    'softaworks/agent-toolkit writing-clearly-and-concisely',\n    'softaworks/agent-toolkit commit-work',\n    'softaworks/agent-toolkit mermaid-diagrams',\n    'softaworks/agent-toolkit dependency-updater',\n    'softaworks/agent-toolkit crafting-effective-readmes',\n    'softaworks/agent-toolkit reducing-entropy',\n    'softaworks/agent-toolkit feedback-mastery',\n    'softaworks/agent-toolkit marp-slide',\n    'softaworks/agent-toolkit professional-communication',\n    'softaworks/agent-toolkit difficult-workplace-conversations',\n    'anthropics/skills internal-comms',\n    'othmanadi/planning-with-files planning-with-files',\n  ],\n  security: [\n    'trailofbits/skills semgrep',\n    'trailofbits/skills secure-workflow-guide',\n    'trailofbits/skills codeql',\n    'trailofbits/skills property-based-testing',\n    'trailofbits/skills variant-analysis',\n    'trailofbits/skills guidelines-advisor',\n    'trailofbits/skills sharp-edges',\n    'trailofbits/skills differential-review',\n    'trailofbits/skills ask-questions-if-underspecified',\n    'squirrelscan/skills audit-website',\n  ],\n  mobile: [\n    'wshobson/agents mobile-ios-design',\n    'wshobson/agents mobile-android-design',\n    'dimillian/skills swiftui-ui-patterns',\n    'dimillian/skills swiftui-liquid-glass',\n  ],\n  obsidian: [\n    'kepano/obsidian-skills obsidian-markdown',\n    'kepano/obsidian-skills obsidian-bases',\n    'kepano/obsidian-skills json-canvas',\n  ],\n  prompts: [\n    'f/awesome-chatgpt-prompts skill-lookup',\n    'f/awesome-chatgpt-prompts prompt-lookup',\n    'wshobson/agents prompt-engineering-patterns',\n  ],\n  browser: [\n    'vercel-labs/agent-browser agent-browser',\n  ],\n  content: [\n    'op7418/humanizer-zh humanizer-zh',\n    'blader/humanizer humanizer',\n    'op7418/youtube-clipper-skill youtube-clipper',\n    'jimliu/baoyu-skills baoyu-slide-deck',\n    'jimliu/baoyu-skills baoyu-article-illustrator',\n    'jimliu/baoyu-skills baoyu-cover-image',\n    'jimliu/baoyu-skills baoyu-comic',\n    'jimliu/baoyu-skills baoyu-infographic',\n    'jimliu/baoyu-skills baoyu-image-gen',\n  ],\n  integrations: [\n    'intellectronica/agent-skills context7',\n    'softaworks/agent-toolkit gemini',\n    'softaworks/agent-toolkit codex',\n  ],\n};\n\nexport async function detectStack(projectDir: string): Promise<DetectedStack> {\n  const stack: DetectedStack = {\n    suggestedSkills: [],\n    suggestedAgents: ['security', 'bugs'],\n    dependencies: new Set(),\n  };\n\n  // Detect language\n  if (existsSync(join(projectDir, 'tsconfig.json'))) {\n    stack.language = 'TypeScript';\n    stack.suggestedSkills.push('wshobson/agents typescript-advanced-types');\n  } else if (existsSync(join(projectDir, 'package.json'))) {\n    stack.language = 'JavaScript';\n  } else if (existsSync(join(projectDir, 'requirements.txt')) || existsSync(join(projectDir, 'pyproject.toml'))) {\n    stack.language = 'Python';\n  } else if (existsSync(join(projectDir, 'go.mod'))) {\n    stack.language = 'Go';\n  } else if (existsSync(join(projectDir, 'Cargo.toml'))) {\n    stack.language = 'Rust';\n  }\n\n  // Detect Swift/iOS projects\n  if (existsSync(join(projectDir, 'Package.swift')) || \n      existsSync(join(projectDir, 'project.pbxproj')) ||\n      existsSync(join(projectDir, '*.xcodeproj'))) {\n    stack.language = 'Swift';\n    stack.suggestedSkills.push('dimillian/skills swiftui-ui-patterns');\n    stack.suggestedSkills.push('dimillian/skills swiftui-liquid-glass');\n  }\n\n  // Detect package manager\n  if (existsSync(join(projectDir, 'pnpm-lock.yaml'))) {\n    stack.packageManager = 'pnpm';\n  } else if (existsSync(join(projectDir, 'yarn.lock'))) {\n    stack.packageManager = 'yarn';\n  } else if (existsSync(join(projectDir, 'bun.lockb'))) {\n    stack.packageManager = 'bun';\n  } else if (existsSync(join(projectDir, 'package-lock.json'))) {\n    stack.packageManager = 'npm';\n  }\n\n  // Check for GitHub Actions\n  if (existsSync(join(projectDir, '.github', 'workflows'))) {\n    stack.suggestedSkills.push('wshobson/agents github-actions-templates');\n  }\n\n  // Parse package.json for framework detection\n  try {\n    const pkgPath = join(projectDir, 'package.json');\n    if (existsSync(pkgPath)) {\n      const pkgContent = await readFile(pkgPath, 'utf-8');\n      const pkg = JSON.parse(pkgContent);\n      const deps = { ...pkg.dependencies, ...pkg.devDependencies };\n\n      // Store all dependencies\n      for (const dep of Object.keys(deps)) {\n        stack.dependencies.add(dep);\n      }\n\n      // Add skills based on dependency mappings\n      for (const dep of Object.keys(deps)) {\n        const skills = SKILL_MAPPINGS[dep];\n        if (skills) {\n          stack.suggestedSkills.push(...skills);\n        }\n      }\n\n      // Framework detection (for display purposes)\n      if (deps['next']) {\n        stack.framework = `Next.js ${deps['next'].replace('^', '')}`;\n        stack.suggestedAgents.push('accessibility', 'design');\n      } else if (deps['react']) {\n        stack.framework = `React ${deps['react'].replace('^', '')}`;\n        stack.suggestedAgents.push('accessibility');\n      } else if (deps['vue']) {\n        stack.framework = `Vue ${deps['vue'].replace('^', '')}`;\n      } else if (deps['nuxt']) {\n        stack.framework = `Nuxt ${deps['nuxt'].replace('^', '')}`;\n      } else if (deps['svelte']) {\n        stack.framework = 'Svelte';\n      } else if (deps['express']) {\n        stack.framework = 'Express.js';\n      } else if (deps['fastify']) {\n        stack.framework = 'Fastify';\n      } else if (deps['hono']) {\n        stack.framework = 'Hono';\n      } else if (deps['elysia']) {\n        stack.framework = 'Elysia';\n      } else if (deps['@nestjs/core']) {\n        stack.framework = 'NestJS';\n      }\n\n      // Auth detection\n      if (deps['next-auth'] || deps['@auth/core']) {\n        stack.auth = 'NextAuth.js';\n      } else if (deps['passport']) {\n        stack.auth = 'Passport.js';\n      } else if (deps['@clerk/nextjs'] || deps['@clerk/clerk-react']) {\n        stack.auth = 'Clerk';\n      } else if (deps['better-auth']) {\n        stack.auth = 'Better Auth';\n      }\n\n      // Database detection\n      if (deps['prisma'] || deps['@prisma/client']) {\n        stack.database = 'Prisma ORM';\n      } else if (deps['drizzle-orm']) {\n        stack.database = 'Drizzle ORM';\n      } else if (deps['@supabase/supabase-js']) {\n        stack.database = 'Supabase';\n      } else if (deps['mongoose']) {\n        stack.database = 'MongoDB (Mongoose)';\n      } else if (deps['pg']) {\n        stack.database = 'PostgreSQL';\n      } else if (deps['convex']) {\n        stack.database = 'Convex';\n      }\n\n    }\n  } catch {\n    // package.json parsing failed\n  }\n\n  // Database from other sources\n  if (!stack.database) {\n    if (existsSync(join(projectDir, 'prisma', 'schema.prisma'))) {\n      stack.database = 'Prisma ORM';\n    } else if (existsSync(join(projectDir, 'drizzle.config.ts'))) {\n      stack.database = 'Drizzle ORM';\n    }\n  }\n\n  // Deduplicate\n  stack.suggestedSkills = [...new Set(stack.suggestedSkills)];\n  stack.suggestedAgents = [...new Set(stack.suggestedAgents)];\n\n  return stack;\n}\n\n/**\n * Get skills for a specific category\n */\nexport function getSkillsByCategory(category: string): string[] {\n  return SKILL_CATEGORIES[category] || [];\n}\n\n/**\n * Get all available skill categories\n */\nexport function getSkillCategories(): { name: string; count: number }[] {\n  return Object.entries(SKILL_CATEGORIES).map(([name, skills]) => ({\n    name,\n    count: skills.length,\n  }));\n}\n\n/**\n * Get project dependencies from package.json\n */\nexport async function getProjectDependencies(projectDir: string): Promise<Set<string>> {\n  try {\n    const pkgPath = join(projectDir, 'package.json');\n    if (!existsSync(pkgPath)) {\n      return new Set();\n    }\n    \n    const pkg = JSON.parse(await readFile(pkgPath, 'utf-8'));\n    return new Set([\n      ...Object.keys(pkg.dependencies || {}),\n      ...Object.keys(pkg.devDependencies || {}),\n    ]);\n  } catch {\n    return new Set();\n  }\n}\n","/**\n * Bootstrap File System\n * \n * Manages workspace files that inject context at scan start.\n * Files: BOOTSTRAP.md, RULES.md, TEAM.md\n */\n\nimport { readFile, writeFile, unlink, mkdir } from 'fs/promises';\nimport { existsSync } from 'fs';\nimport { join } from 'path';\nimport { getWorkingDirectory, getTrieDirectory } from '../utils/workspace.js';\nimport { detectStack, type DetectedStack } from './stack-detector.js';\n\nexport interface BootstrapFile {\n  name: string;\n  path: string;\n  type: 'user' | 'auto' | 'one-time';\n  exists: boolean;\n  content?: string;\n}\n\nexport interface BootstrapContext {\n  files: BootstrapFile[];\n  injectedContent: string;\n  needsBootstrap: boolean;\n}\n\ninterface BootstrapFileSpec {\n  name: string;\n  type: 'user' | 'auto' | 'one-time';\n  description: string;\n}\n\nconst BOOTSTRAP_FILES: BootstrapFileSpec[] = [\n  { name: 'PROJECT.md', type: 'user', description: 'Project overview and conventions' },\n  { name: 'RULES.md', type: 'user', description: 'Coding standards agents enforce' },\n  { name: 'TEAM.md', type: 'user', description: 'Team ownership and escalation' },\n  { name: 'BOOTSTRAP.md', type: 'one-time', description: 'First-run setup (deleted after)' },\n  { name: 'AGENTS.md', type: 'auto', description: 'Auto-generated scan context' },\n];\n\n/**\n * Load bootstrap files and inject into agent context\n */\nexport async function loadBootstrapContext(workDir?: string): Promise<BootstrapContext> {\n  const projectDir = workDir || getWorkingDirectory(undefined, true);\n  const trieDir = getTrieDirectory(projectDir);\n  const files: BootstrapFile[] = [];\n  const contentParts: string[] = [];\n  let needsBootstrap = false;\n\n  for (const file of BOOTSTRAP_FILES) {\n    const filePath = join(trieDir, file.name);\n    const exists = existsSync(filePath);\n    \n    if (file.name === 'BOOTSTRAP.md' && exists) {\n      needsBootstrap = true;\n    }\n    \n    let content: string | undefined;\n    if (exists) {\n      try {\n        content = await readFile(filePath, 'utf-8');\n        if (content.trim() && file.type !== 'one-time') {\n          contentParts.push(`<!-- ${file.name} -->\\n${content}`);\n        }\n      } catch {\n        // Skip files that can't be read\n      }\n    }\n\n    const fileEntry: BootstrapFile = {\n      name: file.name,\n      path: filePath,\n      type: file.type,\n      exists,\n    };\n    if (content) fileEntry.content = content;\n    files.push(fileEntry);\n  }\n\n  return {\n    files,\n    injectedContent: contentParts.join('\\n\\n---\\n\\n'),\n    needsBootstrap,\n  };\n}\n\n/**\n * Initialize bootstrap files for a new project\n */\nexport async function initializeBootstrapFiles(options: {\n  workDir?: string;\n  force?: boolean;\n  skipBootstrap?: boolean;\n} = {}): Promise<{ created: string[]; skipped: string[]; stack: DetectedStack }> {\n  const projectDir = options.workDir || getWorkingDirectory(undefined, true);\n  const trieDir = getTrieDirectory(projectDir);\n  await mkdir(trieDir, { recursive: true });\n\n  const created: string[] = [];\n  const skipped: string[] = [];\n\n  const stack = await detectStack(projectDir);\n\n  for (const file of BOOTSTRAP_FILES) {\n    const filePath = join(trieDir, file.name);\n    const exists = existsSync(filePath);\n\n    if (exists && !options.force) {\n      skipped.push(file.name);\n      continue;\n    }\n\n    if (file.name === 'BOOTSTRAP.md' && options.skipBootstrap) {\n      skipped.push(file.name);\n      continue;\n    }\n\n    if (file.name === 'AGENTS.md') {\n      skipped.push(file.name);\n      continue;\n    }\n\n    const template = getFileTemplate(file.name, stack);\n    if (template) {\n      await writeFile(filePath, template);\n      created.push(file.name);\n    }\n  }\n\n  return { created, skipped, stack };\n}\n\n/**\n * Mark bootstrap as complete (delete BOOTSTRAP.md)\n */\nexport async function completeBootstrap(workDir?: string): Promise<boolean> {\n  const projectDir = workDir || getWorkingDirectory(undefined, true);\n  const bootstrapPath = join(getTrieDirectory(projectDir), 'BOOTSTRAP.md');\n\n  try {\n    await unlink(bootstrapPath);\n    return true;\n  } catch {\n    return false;\n  }\n}\n\n/**\n * Check if bootstrap is needed (BOOTSTRAP.md exists)\n */\nexport function needsBootstrap(workDir?: string): boolean {\n  const projectDir = workDir || getWorkingDirectory(undefined, true);\n  const bootstrapPath = join(getTrieDirectory(projectDir), 'BOOTSTRAP.md');\n  return existsSync(bootstrapPath);\n}\n\n/**\n * Get rules from RULES.md\n */\nexport async function loadRules(workDir?: string): Promise<string | null> {\n  const projectDir = workDir || getWorkingDirectory(undefined, true);\n  const rulesPath = join(getTrieDirectory(projectDir), 'RULES.md');\n  \n  try {\n    if (existsSync(rulesPath)) {\n      return await readFile(rulesPath, 'utf-8');\n    }\n  } catch {\n    // Rules file doesn't exist or can't be read\n  }\n  \n  return null;\n}\n\n/**\n * Get team info from TEAM.md\n */\nexport async function loadTeamInfo(workDir?: string): Promise<string | null> {\n  const projectDir = workDir || getWorkingDirectory(undefined, true);\n  const teamPath = join(getTrieDirectory(projectDir), 'TEAM.md');\n  \n  try {\n    if (existsSync(teamPath)) {\n      return await readFile(teamPath, 'utf-8');\n    }\n  } catch {\n    // Team file doesn't exist or can't be read\n  }\n  \n  return null;\n}\n\nfunction getFileTemplate(fileName: string, stack: DetectedStack): string | null {\n  switch (fileName) {\n    case 'PROJECT.md':\n      return getProjectTemplate(stack);\n    case 'RULES.md':\n      return getRulesTemplate(stack);\n    case 'TEAM.md':\n      return getTeamTemplate();\n    case 'BOOTSTRAP.md':\n      return getBootstrapTemplate(stack);\n    default:\n      return null;\n  }\n}\n\nfunction getProjectTemplate(stack: DetectedStack): string {\n  const lines: string[] = ['# Project Overview', '', '> Define your project context here. AI assistants read this first.', ''];\n  \n  lines.push('## Description', '', '[Describe what this project does and who it\\'s for]', '');\n  \n  lines.push('## Technology Stack', '');\n  if (stack.framework) lines.push(`- **Framework:** ${stack.framework}`);\n  if (stack.language) lines.push(`- **Language:** ${stack.language}`);\n  if (stack.database) lines.push(`- **Database:** ${stack.database}`);\n  if (stack.auth) lines.push(`- **Auth:** ${stack.auth}`);\n  if (!stack.framework && !stack.language && !stack.database) {\n    lines.push('[Add your technology stack]');\n  }\n  lines.push('');\n  \n  lines.push('## Architecture', '', '[Key patterns and design decisions]', '');\n  lines.push('## Coding Conventions', '', '[Style rules agents should follow]', '');\n  lines.push('## AI Instructions', '', 'When working on this project:', '1. [Instruction 1]', '2. [Instruction 2]', '3. [Instruction 3]', '');\n  lines.push('---', '', '*Edit this file to provide project context to AI assistants.*');\n  \n  return lines.join('\\n');\n}\n\nfunction getRulesTemplate(stack: DetectedStack): string {\n  const packageManager = stack.packageManager || 'npm';\n  \n  return `# Project Rules\n\n> These rules are enforced by Trie agents during scans.\n> Violations appear as issues with [RULES] prefix.\n\n## Code Style\n\n1. Use named exports, not default exports\n2. Prefer \\`${packageManager}\\` for package management\n3. Maximum file length: 300 lines\n4. Use TypeScript strict mode\n\n## Testing Requirements\n\n1. Critical paths require unit tests\n2. API endpoints require integration tests\n3. Minimum coverage: 70%\n\n## Security Rules\n\n1. Never log sensitive data (passwords, tokens, PII)\n2. All API routes require authentication\n3. Rate limiting required on public endpoints\n4. SQL queries must use parameterized statements\n\n## Review Requirements\n\n1. All PRs require at least 1 reviewer\n2. Security-sensitive changes require security review\n3. Database migrations require review\n\n---\n\n*Edit this file to define your project's coding standards.*\n`;\n}\n\nfunction getTeamTemplate(): string {\n  return `# Team Structure\n\n## Code Ownership\n\n| Area | Owner | Backup | Review Required |\n|------|-------|--------|-----------------|\n| \\`/src/api/\\` | @backend-team | - | 1 approver |\n| \\`/src/ui/\\` | @frontend-team | - | 1 approver |\n| \\`/src/auth/\\` | @security-team | - | Security review |\n\n## Escalation\n\n| Severity | First Contact | Escalate To | SLA |\n|----------|--------------|-------------|-----|\n| Critical | Team lead | CTO | 1 hour |\n| Serious | PR reviewer | Team lead | 4 hours |\n| Moderate | Self-serve | - | 1 day |\n\n## Contacts\n\n- **Security:** [email/slack]\n- **Privacy:** [email/slack]\n- **Emergencies:** [phone/pager]\n\n---\n\n*Edit this file to define your team structure.*\n`;\n}\n\nfunction getBootstrapTemplate(stack: DetectedStack): string {\n  const skillCommands = stack.suggestedSkills\n    .map(s => `trie skills add ${s}`)\n    .join('\\n');\n\n  const agentList = stack.suggestedAgents.join(', ');\n\n  const lines: string[] = [\n    '# Trie Bootstrap Checklist',\n    '',\n    'This file guides your first scan setup. **Delete when complete.**',\n    '',\n    '## Auto-Detected Stack',\n    '',\n    'Based on your project, Trie detected:',\n  ];\n  \n  if (stack.framework) lines.push(`- **Framework:** ${stack.framework}`);\n  if (stack.language) lines.push(`- **Language:** ${stack.language}`);\n  if (stack.database) lines.push(`- **Database:** ${stack.database}`);\n  if (stack.auth) lines.push(`- **Auth:** ${stack.auth}`);\n  \n  lines.push('', '## Recommended Actions', '', '### 1. Skills to Install', 'Based on your stack, consider installing:', '```bash');\n  lines.push(skillCommands || '# No specific skills detected - browse https://skills.sh');\n  lines.push('```', '', '### 2. Agents to Enable', `Your stack suggests these agents: ${agentList || 'security, bugs'}`, '');\n  lines.push('### 3. Configure Rules', 'Add your coding standards to `.trie/RULES.md`.', '');\n  lines.push('### 4. Run First Scan', '```bash', 'trie scan', '```', '');\n  lines.push('---', '', '**Delete this file after completing setup.** Run:', '```bash', 'rm .trie/BOOTSTRAP.md', '```');\n  \n  return 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package/dist/{chunk-3RRXWX3V.js → chunk-AF2APASP.js}

@@ -1,9 +1,9 @@
-import {
-  Trie
-} from "./chunk-6NLHFIYA.js";
 import {
   atomicWriteJSON
 } from "./chunk-43X6JBEM.js";
+import {
+  Trie
+} from "./chunk-6NLHFIYA.js";
 import {
   getTrieDirectory
 } from "./chunk-SH7H3WRU.js";
@@ -212,9 +212,43 @@ var CodebaseIndex = class {
     }
     return cleared;
   }
+  /**
+   * Get file count
+   */
+  getFileCount() {
+    return this.trie.getWithPrefix("").length;
+  }
+  /**
+   * Get approximate cache size in bytes
+   */
+  getCacheSize() {
+    const allFiles = this.trie.getWithPrefix("").map((m) => m.value).filter((v) => v !== null);
+    return allFiles.reduce((sum, file) => {
+      const violationSize = file.violations ? file.violations.reduce((vSum, v) => vSum + (v.details?.length || 50), 0) : 0;
+      return sum + file.path.length + violationSize;
+    }, 0);
+  }
+  /**
+   * Get last updated timestamp
+   */
+  getLastUpdated() {
+    return this.lastUpdated;
+  }
+  /**
+   * Set cached violations for a file and goal (used by fast analyzer)
+   */
+  setCachedViolations(filePath, goalId, violations) {
+    const metadata = this.getFile(filePath);
+    if (!metadata) return;
+    metadata.lastScanned = Date.now();
+    if (!metadata.violations) metadata.violations = [];
+    metadata.violations = metadata.violations.filter((v) => v.goalId !== goalId);
+    metadata.violations.push(...violations);
+    this.trie.insert(filePath, metadata);
+  }
 };
 
 export {
   CodebaseIndex
 };
-//# sourceMappingURL=chunk-3RRXWX3V.js.map
+//# sourceMappingURL=chunk-AF2APASP.js.map

package/dist/{chunk-3RRXWX3V.js.map → chunk-AF2APASP.js.map}

@@ -1 +1 @@
-{"version":3,"sources":["../src/context/codebase-index.ts"],"sourcesContent":["/**\n * Codebase Index - Fast file indexing for goal violation detection\n * \n * Uses Trie structure for efficient file lookup and caching to avoid\n * re-scanning unchanged files.\n * \n * For large codebases, this dramatically improves goal check performance:\n * - Indexes file hashes to detect changes\n * - Caches AI analysis results\n * - Uses Trie for O(m) lookups where m = path length\n * - Stores file metadata (size, type, last modified, etc.)\n */\n\nimport { readFile, stat } from 'fs/promises';\nimport { createHash } from 'crypto';\nimport { join } from 'path';\nimport { existsSync, readFileSync } from 'fs';\nimport { Trie } from '../trie/trie.js';\nimport { getTrieDirectory } from '../utils/workspace.js';\nimport { atomicWriteJSON } from '../utils/atomic-write.js';\n\nexport interface FileMetadata {\n  path: string;\n  hash: string; // SHA-256 of content\n  size: number;\n  lastModified: number;\n  type: string; // Extension\n  lastScanned?: number; // Timestamp of last AI scan\n  violations?: {\n    goalId: string;\n    goalDescription: string;\n    found: boolean;\n    details?: string;\n    confidence?: number;\n    timestamp: number;\n  }[];\n}\n\nexport interface CodebaseIndexData {\n  version: number;\n  lastUpdated: string;\n  fileCount: number;\n  trie: any; // Serialized Trie\n}\n\nexport class CodebaseIndex {\n  private trie: Trie<FileMetadata> = new Trie();\n  private projectPath: string;\n  private indexPath: string;\n  private lastUpdated: string | null = null;\n\n  constructor(projectPath: string) {\n    this.projectPath = projectPath;\n    this.indexPath = join(getTrieDirectory(projectPath), 'codebase-index.json');\n    this.load();\n  }\n\n  /**\n   * Load index from disk if it exists\n   */\n  private load(): void {\n    if (!existsSync(this.indexPath)) return;\n\n    try {\n      const raw = JSON.parse(readFileSync(this.indexPath, 'utf-8'));\n      if (raw.trie) {\n        this.trie = Trie.fromJSON<FileMetadata>(raw.trie);\n      }\n      if (raw.lastUpdated) {\n        this.lastUpdated = raw.lastUpdated;\n      }\n    } catch (error) {\n      console.error('Failed to load codebase index:', error);\n    }\n  }\n\n  /**\n   * Save index to disk\n   */\n  async save(): Promise<void> {\n    this.lastUpdated = new Date().toISOString();\n    const data: CodebaseIndexData = {\n      version: 1,\n      lastUpdated: this.lastUpdated,\n      fileCount: this.trie.getWithPrefix('').length,\n      trie: this.trie.toJSON(),\n    };\n\n    await atomicWriteJSON(this.indexPath, data);\n  }\n\n  /**\n   * Add or update a file in the index\n   * Returns null if the file doesn't exist or can't be read\n   */\n  async indexFile(filePath: string): Promise<FileMetadata | null> {\n    // Safety check: if filePath is already absolute and doesn't start with projectPath,\n    // this is likely a bug (stale cache entry from different project)\n    if (filePath.startsWith('/')) {\n      // Already absolute - check if it's within our project\n      if (!filePath.toLowerCase().startsWith(this.projectPath.toLowerCase())) {\n        return null; // Wrong project, skip silently\n      }\n      // It's absolute but within our project - use as-is\n    }\n    \n    // Build absolute path: if filePath is relative, join with projectPath\n    // If filePath is absolute (and within project), use it directly\n    const absolutePath = filePath.startsWith('/') ? filePath : join(this.projectPath, filePath);\n    \n    try {\n      const content = await readFile(absolutePath, 'utf-8');\n      const stats = await stat(absolutePath);\n      const hash = createHash('sha256').update(content).digest('hex');\n\n      const metadata: FileMetadata = {\n        path: filePath,\n        hash,\n        size: stats.size,\n        lastModified: stats.mtimeMs,\n        type: filePath.split('.').pop() || '',\n      };\n\n      // Check if file exists in index\n    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prefix = directoryPath.endsWith('/') ? directoryPath : `${directoryPath}/`;\n    const matches = this.trie.getWithPrefix(prefix);\n    return matches.map(m => m.value).filter((v): v is FileMetadata => v !== null);\n  }\n\n  /**\n   * Get files that match a pattern (uses Trie prefix matching)\n   */\n  getFilesWithPrefix(prefix: string): FileMetadata[] {\n    const matches = this.trie.getWithPrefix(prefix);\n    return matches.map(m => m.value).filter((v): v is FileMetadata => v !== null);\n  }\n\n  /**\n   * Get files by type (extension)\n   */\n  getFilesByType(type: string): FileMetadata[] {\n    const allFiles = this.trie.getWithPrefix('');\n    return allFiles\n      .map(m => m.value)\n      .filter((v): v is FileMetadata => v != null && v.type === type);\n  }\n\n  /**\n   * Record goal violation scan result for a file\n   */\n  recordViolation(\n    filePath: string,\n    goalId: string,\n    goalDescription: string,\n    found: boolean,\n    details?: string,\n    confidence?: number\n  ): void {\n    const metadata = this.getFile(filePath);\n    if (!metadata) return;\n\n    metadata.lastScanned = Date.now();\n    if (!metadata.violations) metadata.violations = [];\n\n    // Remove existing violation for this goal\n    metadata.violations = metadata.violations.filter(v => v.goalId !== goalId);\n\n    // Add new violation result\n    const entry: { goalId: string; goalDescription: string; found: boolean; timestamp: number; details?: string; confidence?: number } = {\n      goalId,\n      goalDescription,\n      found,\n      timestamp: Date.now(),\n    };\n    if (details !== undefined) entry.details = details;\n    if (confidence !== undefined) entry.confidence = confidence;\n    metadata.violations.push(entry);\n\n    this.trie.insert(filePath, metadata);\n  }\n\n  /**\n   * Get cached violation results for a file\n   */\n  getCachedViolations(filePath: string, goalId?: string): FileMetadata['violations'] {\n    const metadata = this.getFile(filePath);\n    if (!metadata || !metadata.violations) return undefined;\n\n    if (goalId) {\n      return metadata.violations.filter(v => v.goalId === goalId);\n    }\n\n    return metadata.violations;\n  }\n\n  /**\n   * Check if the index is empty (needs initial indexing)\n   */\n  isEmpty(): boolean {\n    return this.trie.getWithPrefix('').length === 0;\n  }\n\n  /**\n   * Get statistics about the index\n   */\n  getStats(): {\n    totalFiles: number;\n    totalSize: number;\n    filesByType: Record<string, number>;\n    scannedFiles: number;\n    filesWithViolations: number;\n    lastUpdated: string | null;\n  } {\n    const allFiles = this.trie.getWithPrefix('').map(m => m.value).filter((v): v is FileMetadata => v !== null);\n\n    const stats = {\n      totalFiles: allFiles.length,\n      totalSize: allFiles.reduce((sum, f) => sum + f.size, 0),\n      filesByType: {} as Record<string, number>,\n      scannedFiles: allFiles.filter(f => f.lastScanned).length,\n      filesWithViolations: 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 if (!metadata || !metadata.violations) return undefined;\n\n    if (goalId) {\n      return metadata.violations.filter(v => v.goalId === goalId);\n    }\n\n    return metadata.violations;\n  }\n\n  /**\n   * Check if the index is empty (needs initial indexing)\n   */\n  isEmpty(): boolean {\n    return this.trie.getWithPrefix('').length === 0;\n  }\n\n  /**\n   * Get statistics about the index\n   */\n  getStats(): {\n    totalFiles: number;\n    totalSize: number;\n    filesByType: Record<string, number>;\n    scannedFiles: number;\n    filesWithViolations: number;\n    lastUpdated: string | null;\n  } {\n    const allFiles = this.trie.getWithPrefix('').map(m => m.value).filter((v): v is FileMetadata => v !== null);\n\n    const stats = {\n      totalFiles: allFiles.length,\n      totalSize: allFiles.reduce((sum, f) => sum + f.size, 0),\n      filesByType: {} as Record<string, number>,\n      scannedFiles: allFiles.filter(f => f.lastScanned).length,\n      filesWithViolations: allFiles.filter(f => f.violations && f.violations.some(v => v.found)).length,\n      lastUpdated: this.lastUpdated,\n    };\n\n    for (const file of allFiles) {\n      stats.filesByType[file.type] = (stats.filesByType[file.type] || 0) + 1;\n    }\n\n    return stats;\n  }\n\n  /**\n   * Clear stale cached results (older than maxAgeMs)\n   */\n  clearStaleCache(maxAgeMs: number = 7 * 24 * 60 * 60 * 1000): number {\n    const allFiles = this.trie.getWithPrefix('').map(m => m.value).filter((v): v is FileMetadata => v !== null);\n    const cutoff = Date.now() - maxAgeMs;\n    let cleared = 0;\n\n    for (const file of allFiles) {\n      if (file.violations) {\n        const before = file.violations.length;\n        file.violations = file.violations.filter(v => v.timestamp > cutoff);\n        cleared += before - file.violations.length;\n        if (file.violations.length === 0) {\n          delete file.lastScanned;\n        }\n        this.trie.insert(file.path, file);\n      }\n    }\n\n    return cleared;\n  }\n\n  /**\n   * Get file count\n   */\n  getFileCount(): number {\n    return this.trie.getWithPrefix('').length;\n  }\n\n  /**\n   * Get approximate cache size in bytes\n   */\n  getCacheSize(): number {\n    const allFiles = this.trie.getWithPrefix('').map(m => m.value).filter((v): v is FileMetadata => v !== null);\n    return allFiles.reduce((sum, file) => {\n      const violationSize = file.violations\n        ? file.violations.reduce((vSum, v) => vSum + (v.details?.length || 50), 0)\n        : 0;\n      return sum + file.path.length + violationSize;\n    }, 0);\n  }\n\n  /**\n   * Get last updated timestamp\n   */\n  getLastUpdated(): string | null {\n    return this.lastUpdated;\n  }\n\n  /**\n   * Set cached violations for a file and goal (used by fast analyzer)\n   */\n  setCachedViolations(\n    filePath: string,\n    goalId: string,\n    violations: Array<{\n      goalId: string;\n      goalDescription: string;\n      found: boolean;\n      details?: 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package/dist/{chunk-QSWUPSLK.js → chunk-FH335WL5.js}

@@ -359,6 +359,14 @@ var ContextGraph = class {
       const ticketData = data;
       return `linear:${ticketData.ticketId}`;
     }
+    if (type === "pull-request") {
+      const prData = data;
+      return `pr:${prData.prNumber}`;
+    }
+    if (type === "github-issue") {
+      const issueData = data;
+      return `gh-issue:${issueData.issueNumber}`;
+    }
     return crypto.randomUUID();
   }
   findFileNode(filePath) {
@@ -391,4 +399,4 @@ var ContextGraph = class {
 export {
   ContextGraph
 };
-//# sourceMappingURL=chunk-QSWUPSLK.js.map
+//# sourceMappingURL=chunk-FH335WL5.js.map

package/dist/chunk-FH335WL5.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/context/graph.ts","../src/context/store.ts"],"sourcesContent":["import crypto from 'node:crypto';\nimport path from 'node:path';\n\nimport type { RiskLevel } from '../types/index.js';\nimport { ContextStore } from './store.js';\nimport type {\n  ChangeNode,\n  ChangeNodeData,\n  ContextSnapshot,\n  DecisionNode,\n  DecisionNodeData,\n  Edge,\n  EdgeDirection,\n  EdgeType,\n  FileNode,\n  FileNodeData,\n  FixNode,\n  FixNodeData,\n  GitHubIssueNode,\n  GitHubIssueNodeData,\n  IncidentNode,\n  IncidentNodeData,\n  IssueNode,\n  IssueNodeData,\n  LinearTicketNode,\n  LinearTicketNodeData,\n  Node,\n  NodeData,\n  NodeType,\n  PatternNode,\n  PatternNodeData,\n  PullRequestNode,\n  PullRequestNodeData\n} from './types.js';\n\nexport class ContextGraph {\n  private readonly store: ContextStore;\n  private readonly projectPath: string;\n\n  constructor(projectPath: string, dbPath?: string, store?: ContextStore) {\n    this.projectPath = projectPath;\n    this.store = store ?? new ContextStore(projectPath, dbPath);\n  }\n\n  get projectRoot(): string {\n    return this.projectPath;\n  }\n\n  async addNode(type: 'file', data: FileNodeData): Promise<FileNode>;\n  async addNode(type: 'change', data: ChangeNodeData): Promise<ChangeNode>;\n  async addNode(type: 'incident', data: IncidentNodeData): Promise<IncidentNode>;\n  async addNode(type: 'issue', data: IssueNodeData): Promise<IssueNode>;\n  async addNode(type: 'pattern', data: PatternNodeData): Promise<PatternNode>;\n  async addNode(type: 'fix', data: FixNodeData): Promise<FixNode>;\n  async addNode(type: 'decision', data: DecisionNodeData): Promise<DecisionNode>;\n  async addNode(type: 'linear-ticket', data: LinearTicketNodeData): Promise<LinearTicketNode>;\n  async addNode(type: 'pull-request', data: PullRequestNodeData): Promise<PullRequestNode>;\n  async addNode(type: 'github-issue', data: GitHubIssueNodeData): Promise<GitHubIssueNode>;\n  async addNode(type: NodeType, data: NodeData): Promise<Node> {\n    const now = new Date().toISOString();\n    const id = this.generateNodeId(type, data);\n    const node = {\n      id,\n      type,\n      data,\n      created_at: now,\n      updated_at: now\n    } as Node;\n\n    this.store.addNode(node);\n    return node;\n  }\n\n  async getNode(type: NodeType, id: string): Promise<Node | null> {\n    return this.store.getNodeByType(type, id);\n  }\n\n  async updateNode(type: NodeType, id: string, updates: Partial<NodeData>): Promise<void> {\n    const updated = this.store.updateNode(id, updates, new Date().toISOString());\n    if (updated && updated.type !== type) {\n      throw new Error(`Type mismatch for node ${id}: expected ${type} but found ${updated.type}`);\n    }\n  }\n\n  async deleteNode(_type: NodeType, id: string): Promise<void> {\n    this.store.deleteNode(id);\n  }\n\n  async addEdge(\n    fromId: string,\n    toId: string,\n    type: EdgeType,\n    metadata: Record<string, unknown> = {},\n    weight = 1\n  ): Promise<Edge> {\n    const edge: Edge = {\n      id: crypto.randomUUID(),\n      from_id: fromId,\n      to_id: toId,\n      type,\n      weight,\n      metadata,\n      created_at: new Date().toISOString()\n    };\n\n    this.store.addEdge(edge);\n    return edge;\n  }\n\n  async getEdges(nodeId: string, direction: EdgeDirection = 'both'): Promise<Edge[]> {\n    return this.store.getEdges(nodeId, direction);\n  }\n\n  async getIncidentsForFile(filePath: string): Promise<IncidentNode[]> {\n    const fileNode = this.findFileNode(filePath);\n    if (!fileNode) return [];\n\n    const incidents = new Map<string, IncidentNode>();\n\n    const affectEdges = this.store.getEdges(fileNode.id, 'in').filter((edge) => edge.type === 'affects');\n    for (const edge of affectEdges) {\n      const changeId = edge.from_id;\n      const leadEdges = this.store.getEdges(changeId, 'out').filter((e) => e.type === 'leadTo');\n      const causedByEdges = this.store.getEdges(changeId, 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ChangeNode[];\n    return nodes\n      .sort((a, b) => new Date(b.data.timestamp).getTime() - new Date(a.data.timestamp).getTime())\n      .slice(0, limit);\n  }\n\n  async calculateFileRisk(filePath: string): Promise<RiskLevel> {\n    const fileNode = this.findFileNode(filePath);\n    if (!fileNode) return 'low';\n\n    // Simple heuristic based on incidents and changes\n    const incidentScore = Math.min(fileNode.data.incidentCount * 2, 6);\n    const changeScore = Math.min(fileNode.data.changeCount, 4);\n    const baseScore = this.riskLevelToScore(fileNode.data.riskLevel);\n    const total = baseScore + incidentScore + changeScore;\n\n    if (total >= 10) return 'critical';\n    if (total >= 7) return 'high';\n    if (total >= 4) return 'medium';\n    return 'low';\n  }\n\n  async listNodes(): Promise<Node[]> {\n    return this.store.listNodes();\n  }\n\n  async listEdges(): Promise<Edge[]> {\n    return this.store.listEdges();\n  }\n\n  async deleteEdge(id: string): Promise<void> 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normalizePath(filePath: string): string {\n    return path.resolve(this.projectPath, filePath);\n  }\n\n  private riskLevelToScore(level: RiskLevel): number {\n    switch (level) {\n      case 'critical':\n        return 6;\n      case 'high':\n        return 4;\n      case 'medium':\n        return 2;\n      default:\n        return 0;\n    }\n  }\n\n  private isNewer(incoming: string, existing: string): boolean {\n    return new Date(incoming).getTime() >= new Date(existing).getTime();\n  }\n}\n","import Database, { type Database as DatabaseType } from 'better-sqlite3';\nimport fs from 'node:fs';\nimport path from 'node:path';\nimport { getTrieDirectory } from '../utils/workspace.js';\n\nimport type { Edge, EdgeDirection, EdgeType, Node, NodeData, NodeType } from './types.js';\n\ntype NodeRow = {\n  id: string;\n  type: NodeType;\n  data: string;\n  created_at: string;\n  updated_at: string;\n};\n\ntype EdgeRow = {\n  id: string;\n  from_id: string;\n  to_id: string;\n  type: EdgeType;\n  weight: number;\n  metadata: string | null;\n  created_at: string;\n};\n\nexport class ContextStore {\n  private db: DatabaseType;\n  private readonly dbFilePath: string;\n\n  constructor(projectPath: string, dbFilePath?: string) {\n    this.dbFilePath = dbFilePath ?? path.join(getTrieDirectory(projectPath), 'context.db');\n    this.ensureDirectory();\n\n    this.db = new Database(this.dbFilePath);\n    this.configure();\n    this.prepareSchema();\n  }\n\n  get databasePath(): string {\n    return this.dbFilePath;\n  }\n\n  addNode(node: Node): Node {\n    const stmt = this.db.prepare(\n      `INSERT INTO nodes (id, type, data, created_at, updated_at)\n       VALUES (@id, @type, @data, @created_at, @updated_at)`\n    );\n\n    stmt.run({\n      id: node.id,\n      type: node.type,\n      data: JSON.stringify(node.data),\n      created_at: node.created_at,\n      updated_at: node.updated_at\n    });\n\n    return node;\n  }\n\n  upsertNode(node: Node): Node {\n    const stmt = this.db.prepare(\n      `INSERT INTO nodes (id, type, data, created_at, updated_at)\n       VALUES (@id, @type, @data, @created_at, @updated_at)\n       ON CONFLICT(id) DO UPDATE SET\n         type=excluded.type,\n         data=excluded.data,\n         updated_at=excluded.updated_at`\n    );\n\n    stmt.run({\n      id: node.id,\n      type: node.type,\n      data: JSON.stringify(node.data),\n      created_at: node.created_at,\n      updated_at: node.updated_at\n    });\n\n    return node;\n  }\n\n  getNode(id: string): Node | null {\n    const row = this.db.prepare('SELECT * FROM nodes WHERE id = ?').get(id) as NodeRow | undefined;\n    return row ? this.mapNodeRow(row) : null;\n  }\n\n  getNodeByType(type: NodeType, id: string): Node | null {\n    const row = this.db\n      .prepare('SELECT * FROM nodes WHERE id = ? AND type = ?')\n      .get(id, type) as NodeRow | undefined;\n    return row ? this.mapNodeRow(row) : null;\n  }\n\n  updateNode(id: string, updates: Partial<NodeData>, updatedAt: string): Node | null {\n    const existing = this.getNode(id);\n    if (!existing) {\n      return null;\n    }\n\n    const merged = {\n      ...existing,\n      data: { ...existing.data, ...updates },\n      updated_at: updatedAt\n    } as Node;\n\n    this.db\n      .prepare(\n        `UPDATE nodes SET data = @data, updated_at = @updated_at\n         WHERE id = @id`\n      )\n      .run({\n        id,\n        data: JSON.stringify(merged.data),\n        updated_at: merged.updated_at\n      });\n\n    return merged;\n  }\n\n  deleteNode(id: string): void {\n    const deleteEdges = this.db.prepare('DELETE FROM edges WHERE from_id = ? 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package/dist/{chunk-Y32FM3MR.js → chunk-FPEMP54L.js}

@@ -148,18 +148,22 @@ async function runAIAnalysis(request) {
     };
   }
   try {
-    const response = await client.messages.create({
-      model: "claude-sonnet-4-20250514",
-      max_tokens: request.maxTokens || 4096,
-      temperature: request.temperature ?? 0.3,
-      system: request.systemPrompt,
-      messages: [
-        {
-          role: "user",
-          content: request.userPrompt
-        }
-      ]
-    });
+    const response = await client.messages.create(
+      {
+        model: "claude-sonnet-4-20250514",
+        // Increase default token limit to prevent truncation in Trie Watch
+        max_tokens: request.maxTokens || 8192,
+        temperature: request.temperature ?? 0.3,
+        system: request.systemPrompt,
+        messages: [
+          {
+            role: "user",
+            content: request.userPrompt
+          }
+        ]
+      },
+      request.signal ? { signal: request.signal } : void 0
+    );
     const textContent = response.content.filter((block) => block.type === "text").map((block) => block.text).join("\n");
     return {
       success: true,
@@ -246,7 +250,8 @@ ${issue.code}
   return runAIAnalysis({
     systemPrompt: systemPrompts[request.analysisType],
     userPrompt,
-    maxTokens: 4096,
+    // Increase token limit to prevent response truncation
+    maxTokens: 8192,
     temperature: 0.2
   });
 }
@@ -271,7 +276,8 @@ async function runAIWithTools(request) {
       onProgress?.(round === 0 ? "Analyzing..." : `Processing (round ${round + 1})...`);
       const response = await client.messages.create({
         model: "claude-sonnet-4-20250514",
-        max_tokens: request.maxTokens || 4096,
+        // Increase default token limit to prevent truncation in Trie Watch
+        max_tokens: request.maxTokens || 8192,
         temperature: 0.3,
         system: request.systemPrompt,
         messages,
@@ -352,4 +358,4 @@ export {
   getAIStatusMessage,
   runAIWithTools
 };
-//# sourceMappingURL=chunk-Y32FM3MR.js.map
+//# sourceMappingURL=chunk-FPEMP54L.js.map

package/dist/chunk-FPEMP54L.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/ai/client.ts"],"sourcesContent":["/**\n * Centralized AI Client\n * \n * Handles API key detection, graceful fallbacks, and AI-powered analysis.\n * All agents use this for AI-enhanced analysis.\n * \n * API Key Setup:\n * 1. Set ANTHROPIC_API_KEY in your environment\n * 2. Or add it to your MCP server config (mcp.json)\n * 3. Or create .env file in your project root\n * \n * If no API key is found, agents fall back to pattern-only mode.\n */\n\nimport Anthropic from '@anthropic-ai/sdk';\nimport { readFileSync, writeFileSync, mkdirSync, existsSync } from 'fs';\nimport { execSync } from 'node:child_process';\nimport { join } from 'path';\nimport { getWorkingDirectory, getTrieDirectory } from '../utils/workspace.js';\n\n// Cached client instance\nlet clientInstance: Anthropic | null = null;\nlet apiKeyChecked = false;\nlet apiKeyAvailable = false;\n\n/**\n * Check if AI is available (API key is set)\n */\nexport function isAIAvailable(): boolean {\n  if (!apiKeyChecked) {\n    checkAPIKey();\n  }\n  return apiKeyAvailable;\n}\n\n/**\n * Read API key from Apple Keychain (macOS only)\n */\nexport function getKeyFromKeychain(): string | null {\n  if (process.platform !== 'darwin') return null;\n  try {\n    const result = execSync(\n      'security find-generic-password -a \"trie\" -s \"anthropic-api-key\" -w 2>/dev/null',\n      { encoding: 'utf-8' }\n    ).trim();\n    return result.length > 10 ? result : null;\n  } catch { return null; }\n}\n\n/**\n * Save API key to Apple Keychain (macOS only)\n */\nexport function saveKeyToKeychain(key: string): boolean {\n  if (process.platform !== 'darwin') return false;\n  try {\n    try { execSync('security delete-generic-password -a \"trie\" -s \"anthropic-api-key\" 2>/dev/null'); } catch { /* not found */ }\n    execSync(`security add-generic-password -a \"trie\" -s \"anthropic-api-key\" -w \"${key.replace(/\"/g, '\\\\\"')}\"`);\n    return true;\n  } catch { return false; }\n}\n\n/**\n * Save API key and refresh the cached state\n */\nexport function setAPIKey(key: string): { saved: boolean; method: 'keychain' | 'config' } {\n  process.env.ANTHROPIC_API_KEY = key;\n  clientInstance = null;\n  apiKeyChecked = true;\n  apiKeyAvailable = true;\n\n  if (saveKeyToKeychain(key)) {\n    return { saved: true, method: 'keychain' };\n  }\n\n  try {\n    const workDir = getWorkingDirectory(undefined, true);\n    const trieDir = getTrieDirectory(workDir);\n    const configPath = join(trieDir, 'config.json');\n    let config: Record<string, unknown> = {};\n    if (existsSync(configPath)) {\n      config = JSON.parse(readFileSync(configPath, 'utf-8'));\n    }\n    if (!config.apiKeys || typeof config.apiKeys !== 'object') config.apiKeys = {};\n    (config.apiKeys as Record<string, string>).anthropic = key;\n    mkdirSync(trieDir, { recursive: true });\n    writeFileSync(configPath, JSON.stringify(config, null, 2));\n  } catch { /* best effort */ }\n\n  return { saved: true, method: 'config' };\n}\n\n/**\n * Check for API key in environment, keychain, config, and .env files\n */\nfunction checkAPIKey(): void {\n  apiKeyChecked = true;\n  \n  // 1. Check standard env var first\n  const envApiKey = process.env.ANTHROPIC_API_KEY;\n  if (envApiKey && envApiKey.length > 10) {\n    apiKeyAvailable = true;\n    return;\n  }\n\n  // 2. Check Apple Keychain (macOS)\n  const keychainKey = getKeyFromKeychain();\n  if (keychainKey) {\n    process.env.ANTHROPIC_API_KEY = keychainKey;\n    apiKeyAvailable = true;\n    return;\n  }\n  \n  // 3. Check config file\n  try {\n    const workDir = getWorkingDirectory(undefined, true);\n    const configPath = join(getTrieDirectory(workDir), 'config.json');\n    \n    if (existsSync(configPath)) {\n      const configContent = readFileSync(configPath, 'utf-8');\n      const config = JSON.parse(configContent);\n      \n      if (config.apiKeys?.anthropic && config.apiKeys.anthropic.length > 10) {\n        process.env.ANTHROPIC_API_KEY = config.apiKeys.anthropic;\n        apiKeyAvailable = true;\n        return;\n      }\n    }\n  } catch {\n    // Config file doesn't exist or couldn't be read\n  }\n  \n  // 4. 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Set it in your environment to enable AI-powered analysis.\\n' +\n      'Example: export ANTHROPIC_API_KEY=sk-ant-...'\n    );\n  }\n  \n  if (!clientInstance) {\n    clientInstance = new Anthropic();\n  }\n  \n  return clientInstance;\n}\n\n/**\n * Try to get client, return null if not available\n */\nexport function tryGetClient(): Anthropic | null {\n  if (!isAIAvailable()) {\n    return null;\n  }\n  \n  if (!clientInstance) {\n    clientInstance = new Anthropic();\n  }\n  \n  return clientInstance;\n}\n\nexport interface AIAnalysisRequest {\n  systemPrompt: string;\n  userPrompt: string;\n  maxTokens?: number;\n  temperature?: number;\n  /** Optional AbortSignal to cancel the request */\n  signal?: AbortSignal;\n}\n\nexport interface AIAnalysisResult {\n  success: boolean;\n  content: string;\n  error?: string;\n  tokensUsed?: {\n    input: number;\n    output: number;\n  };\n}\n\n/**\n * Run AI analysis with the given prompts\n */\nexport async function runAIAnalysis(request: AIAnalysisRequest): Promise<AIAnalysisResult> {\n  const client = tryGetClient();\n  \n  if (!client) {\n    return {\n      success: false,\n      content: '',\n      error: 'AI not available - ANTHROPIC_API_KEY not set'\n    };\n  }\n  \n  try {\n    const response = await client.messages.create(\n      {\n        model: 'claude-sonnet-4-20250514',\n        // Increase default token limit to prevent truncation in Trie Watch\n        max_tokens: request.maxTokens || 8192,\n        temperature: request.temperature ?? 0.3,\n        system: request.systemPrompt,\n        messages: [\n          {\n            role: 'user',\n            content: request.userPrompt\n          }\n        ]\n      },\n      request.signal ? { signal: request.signal } : undefined\n    );\n    \n    // Extract text content - ensure full text is preserved without truncation\n    const textContent = response.content\n      .filter((block): block is Anthropic.TextBlock => block.type === 'text')\n      .map(block => block.text)\n      .join('\\n');\n    \n    return {\n      success: true,\n      content: textContent,\n      tokensUsed: {\n        input: response.usage.input_tokens,\n        output: response.usage.output_tokens\n      }\n    };\n  } catch (error) {\n    const errorMessage = error instanceof Error ? error.message : String(error);\n    \n    // Check for specific error types\n    if (errorMessage.includes('authentication') || errorMessage.includes('API key')) {\n      return {\n        success: false,\n        content: '',\n        error: 'Invalid API key. Check your ANTHROPIC_API_KEY.'\n      };\n    }\n    \n    if (errorMessage.includes('rate limit')) {\n      return {\n        success: false,\n        content: '',\n        error: 'Rate limited. Try again in a moment.'\n      };\n    }\n    \n    return {\n      success: false,\n      content: '',\n      error: `AI analysis failed: ${errorMessage}`\n    };\n  }\n}\n\n/**\n * AI analysis for code issues\n */\nexport interface CodeIssueAnalysisRequest {\n  issues: Array<{\n    file: string;\n    line?: number;\n    issue: string;\n    code?: string;\n  }>;\n  analysisType: 'validate' | 'expand' | 'fix' | 'explain';\n  context?: string;\n}\n\n/**\n * Run AI analysis on code issues\n * Used by agents to validate, expand, or fix detected issues\n */\nexport async function analyzeCodeIssues(request: CodeIssueAnalysisRequest): Promise<AIAnalysisResult> {\n  const systemPrompts: Record<CodeIssueAnalysisRequest['analysisType'], string> = {\n    validate: `You are a senior code reviewer. Analyze the following issues detected by static analysis.\nFor each issue:\n1. Determine if it's a TRUE POSITIVE (real problem) or FALSE POSITIVE (not actually an issue)\n2. Provide a confidence score (0-100)\n3. Explain your reasoning briefly\n\nOutput format:\n### Issue 1: [file:line]\n**Verdict:** TRUE_POSITIVE / FALSE_POSITIVE\n**Confidence:** [0-100]\n**Reason:** [one line explanation]\n**Fix:** [specific fix if true positive]`,\n\n    expand: `You are a security expert and senior architect. Given these detected code issues, look deeper:\n1. Are there related problems in the same code that were missed?\n2. What's the root cause of these patterns?\n3. What's the blast radius if these issues cause problems?\n4. What architectural changes would prevent these patterns?\n\nBe specific. Reference line numbers. Provide code examples.`,\n\n    fix: `You are an expert programmer. For each issue, provide a specific fix:\n1. Show the exact code change needed\n2. Explain why this fix works\n3. Note any edge cases to consider\n\nUse markdown code blocks with the language specified.`,\n\n    explain: `You are a patient teacher explaining code issues to a junior developer.\nFor each issue:\n1. Explain what the problem is in simple terms\n2. Explain why it's a problem (what could go wrong)\n3. Explain the fix and why it works\n4. Provide a learning resource if relevant`\n  };\n\n  const issuesText = request.issues.map((issue, i) => {\n    let text = `### Issue ${i + 1}: ${issue.file}${issue.line ? ':' + issue.line : ''}\\n`;\n    text += `**Problem:** ${issue.issue}\\n`;\n    if (issue.code) {\n      // Preserve complete code without truncation for analysis\n      text += `**Code:**\\n\\`\\`\\`\\n${issue.code}\\n\\`\\`\\`\\n`;\n    }\n    return text;\n  }).join('\\n');\n\n  const userPrompt = `${request.context ? `Context: ${request.context}\\n\\n` : ''}${issuesText}`;\n\n  return runAIAnalysis({\n    systemPrompt: systemPrompts[request.analysisType],\n    userPrompt,\n    // Increase token limit to prevent response truncation\n    maxTokens: 8192,\n    temperature: 0.2\n  });\n}\n\n/**\n * Get status message about AI availability\n */\nexport function getAIStatusMessage(): string {\n  if (isAIAvailable()) {\n    return '[AI] AI-powered analysis enabled';\n  }\n  return '[!] AI not available (ANTHROPIC_API_KEY not set) - using pattern-only mode';\n}\n\nexport interface AIToolCallRecord {\n  name: string;\n  input: Record<string, unknown>;\n  result?: string;\n}\n\nexport interface AIToolCallResult {\n  success: boolean;\n  content: string;\n  error?: string;\n  toolCalls?: AIToolCallRecord[];\n  toolResults?: string[];\n}\n\n/**\n * Run AI analysis with tool-use support.\n * Loops until Claude returns a final text response or hits maxToolRounds.\n */\nexport async function runAIWithTools(request: {\n  systemPrompt: string;\n  messages: Anthropic.MessageParam[];\n  tools: Anthropic.Tool[];\n  executeTool: (name: string, input: Record<string, unknown>, onProgress?: (msg: string) => void) => Promise<string>;\n  maxTokens?: number;\n  maxToolRounds?: number;\n  onProgress?: (message: string) => void;\n}): Promise<AIToolCallResult> {\n  const client = tryGetClient();\n  if (!client) {\n    return { success: false, content: '', error: 'AI not available - ANTHROPIC_API_KEY not set' };\n  }\n\n  const maxRounds = request.maxToolRounds ?? 5;\n  const messages: Anthropic.MessageParam[] = [...request.messages];\n  const allToolCalls: AIToolCallRecord[] = [];\n  const allToolResults: string[] = [];\n\n  const { onProgress } = request;\n\n  try {\n    for (let round = 0; round < maxRounds; round++) {\n      onProgress?.(round === 0 ? 'Analyzing...' : `Processing (round ${round + 1})...`);\n      const response = await client.messages.create({\n        model: 'claude-sonnet-4-20250514',\n        // Increase default token limit to prevent truncation in Trie Watch\n        max_tokens: request.maxTokens || 8192,\n        temperature: 0.3,\n        system: request.systemPrompt,\n        messages,\n        tools: request.tools,\n      });\n\n      const toolUseBlocks = response.content.filter(\n        (b): b is Anthropic.ToolUseBlock => b.type === 'tool_use'\n      );\n      const textBlocks = response.content.filter(\n        (b): b is Anthropic.TextBlock => b.type === 'text'\n      );\n\n      if (toolUseBlocks.length === 0) {\n        // Preserve complete text content without truncation\n        const result: AIToolCallResult = {\n          success: true,\n          content: textBlocks.map(b => b.text).join('\\n'),\n        };\n        if (allToolCalls.length > 0) {\n          result.toolCalls = allToolCalls;\n       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