@triedotdev/mcp 1.0.137 → 1.0.139

package/dist/chunk-DFPVUMVE.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/cli/dashboard/chat-store.ts"],"sourcesContent":["/**\n * Chat Store - Persistent storage for chat history\n * \n * Features:\n * - Save and load chat sessions\n * - List all chat sessions\n * - Archive management (rename, delete, export)\n * - Atomic writes with backup rotation\n * - Zod validation for data integrity\n * \n * Persists to: .trie/memory/chats/\n */\n\nimport { mkdir, readFile, unlink } from 'fs/promises';\nimport { existsSync } from 'fs';\nimport { join } from 'path';\nimport { getTrieDirectory } from '../../utils/workspace.js';\nimport { z } from 'zod';\nimport { atomicWriteJSON } from '../../utils/atomic-write.js';\nimport type { ChatMessage } from './types.js';\n\n// ============================================================================\n// Schemas\n// ============================================================================\n\nconst ChatMessageSchema = z.object({\n  role: z.enum(['user', 'assistant']),\n  content: z.string(),\n  timestamp: z.number(),\n  toolCalls: z.array(z.object({\n    id: z.string(),\n    name: z.string(),\n    input: z.record(z.any()),\n  })).optional(),\n  pendingFix: z.object({\n    id: z.string(),\n    file: z.string(),\n    goal: z.string(),\n    violation: z.string(),\n    suggestedFix: z.string().optional(),\n  }).optional(),\n});\n\nconst ChatSessionSchema = z.object({\n  id: z.string(),\n  title: z.string(),\n  messages: z.array(ChatMessageSchema),\n  createdAt: z.number(),\n  updatedAt: z.number(),\n  archived: z.boolean(),\n});\n\nexport type ChatSession = z.infer<typeof ChatSessionSchema>;\n\nconst ChatStoreIndexSchema = z.object({\n  version: z.literal(1),\n  sessions: z.array(z.object({\n    id: z.string(),\n    title: z.string(),\n    createdAt: z.number(),\n    updatedAt: z.number(),\n    archived: z.boolean(),\n    messageCount: z.number(),\n  })),\n  lastUpdated: z.string(),\n});\n\ntype ChatStoreIndex = z.infer<typeof ChatStoreIndexSchema>;\n\n// ============================================================================\n// ChatStore Class\n// ============================================================================\n\nexport class ChatStore {\n  private projectPath: string;\n  private index: ChatStoreIndex | null = null;\n  \n  constructor(projectPath: string) {\n    this.projectPath = projectPath;\n  }\n  \n  /**\n   * Get the chats directory path\n   */\n  private getChatsDir(): string {\n    return join(getTrieDirectory(this.projectPath), 'memory', 'chats');\n  }\n  \n  /**\n   * Get the index file path\n   */\n  private getIndexPath(): string {\n    return join(this.getChatsDir(), 'index.json');\n  }\n  \n  /**\n   * Get the path for a specific session file\n   */\n  private getSessionPath(sessionId: string): string {\n    return join(this.getChatsDir(), `${sessionId}.json`);\n  }\n  \n  /**\n   * Load the index file\n   */\n  private async loadIndex(): Promise<ChatStoreIndex> {\n    if (this.index) {\n      return this.index;\n    }\n    \n    const indexPath = this.getIndexPath();\n    \n    if (existsSync(indexPath)) {\n      try {\n        const content = await readFile(indexPath, 'utf-8');\n        const parsed = JSON.parse(content);\n        const result = ChatStoreIndexSchema.safeParse(parsed);\n        \n        if (result.success) {\n          this.index = result.data;\n          return this.index;\n        }\n      } catch (error) {\n        console.error('Failed to load chat index:', error);\n      }\n    }\n    \n    // Create empty index\n    this.index = {\n      version: 1,\n      sessions: [],\n      lastUpdated: new Date().toISOString(),\n    };\n    \n    return this.index;\n  }\n  \n  /**\n   * Save the index file\n   */\n  private async saveIndex(): Promise<void> {\n    if (!this.index) return;\n    \n    const indexPath = this.getIndexPath();\n    const chatsDir = this.getChatsDir();\n    \n    // Ensure directory exists\n    await mkdir(chatsDir, { recursive: true });\n    \n    // Update timestamp\n    this.index.lastUpdated = new Date().toISOString();\n    \n    // Atomic write\n    await atomicWriteJSON(indexPath, this.index);\n  }\n  \n  /**\n   * Generate a unique session ID\n   */\n  private generateSessionId(): string {\n    return `chat-${Date.now()}-${Math.random().toString(36).slice(2, 9)}`;\n  }\n  \n  /**\n   * Generate a default title from the first user message\n   */\n  private generateTitle(messages: ChatMessage[]): string {\n    const firstUser = messages.find(m => m.role === 'user');\n    if (firstUser) {\n      const text = firstUser.content.trim();\n      const maxLen = 50;\n      if (text.length > maxLen) {\n        return text.slice(0, maxLen) + '...';\n      }\n      return text;\n    }\n    return 'New Chat';\n  }\n  \n  /**\n   * Save a chat session\n   */\n  async saveSession(messages: ChatMessage[], sessionId?: string, title?: string): Promise<string> {\n    await this.loadIndex();\n    \n    const id = sessionId || this.generateSessionId();\n    const now = Date.now();\n    \n    // Load existing session if updating\n    let createdAt = now;\n    if (sessionId) {\n      const existing = this.index!.sessions.find(s => s.id === sessionId);\n      if (existing) {\n        createdAt = existing.createdAt;\n      }\n    }\n    \n    const session: ChatSession = {\n      id,\n      title: title || this.generateTitle(messages),\n      messages,\n      createdAt,\n      updatedAt: now,\n      archived: false,\n    };\n    \n    // Validate\n    const result = ChatSessionSchema.safeParse(session);\n    if (!result.success) {\n      throw new Error(`Invalid chat session: ${result.error.message}`);\n    }\n    \n    // Save session file\n    const sessionPath = this.getSessionPath(id);\n    await mkdir(this.getChatsDir(), { recursive: true });\n    await atomicWriteJSON(sessionPath, session);\n    \n    // Update index\n    const existingIndex = this.index!.sessions.findIndex(s => s.id === id);\n    const indexEntry = {\n      id,\n      title: session.title,\n      createdAt: session.createdAt,\n      updatedAt: session.updatedAt,\n      archived: session.archived,\n      messageCount: messages.length,\n    };\n    \n    if (existingIndex >= 0) {\n      this.index!.sessions[existingIndex] = indexEntry;\n    } else {\n      this.index!.sessions.unshift(indexEntry);\n    }\n    \n    await this.saveIndex();\n    \n    return id;\n  }\n  \n  /**\n   * Load a chat session\n   */\n  async loadSession(sessionId: string): Promise<ChatSession | null> {\n    const sessionPath = this.getSessionPath(sessionId);\n    \n    if (!existsSync(sessionPath)) {\n      return null;\n    }\n    \n    try {\n      const content = await readFile(sessionPath, 'utf-8');\n      const parsed = JSON.parse(content);\n      const result = ChatSessionSchema.safeParse(parsed);\n      \n      if (result.success) {\n        return result.data;\n      }\n      \n      console.error('Invalid chat session:', result.error.message);\n      return null;\n    } catch (error) {\n      console.error('Failed to load chat session:', error);\n      return null;\n    }\n  }\n  \n  /**\n   * List all chat sessions\n   */\n  async listSessions(includeArchived: boolean = false): Promise<ChatStoreIndex['sessions']> {\n    await this.loadIndex();\n    \n    let sessions = this.index!.sessions;\n    \n    if (!includeArchived) {\n      sessions = sessions.filter(s => !s.archived);\n    }\n    \n    // Sort by most recent first\n    return sessions.sort((a, b) => b.updatedAt - a.updatedAt);\n  }\n  \n  /**\n   * Delete a chat session\n   */\n  async deleteSession(sessionId: string): Promise<boolean> {\n    await this.loadIndex();\n    \n    const sessionPath = this.getSessionPath(sessionId);\n    \n    if (!existsSync(sessionPath)) {\n      return false;\n    }\n    \n    try {\n      await unlink(sessionPath);\n      \n      // Remove from index\n      this.index!.sessions = this.index!.sessions.filter(s => s.id !== sessionId);\n      await this.saveIndex();\n      \n      return true;\n    } catch (error) {\n      console.error('Failed to delete chat session:', error);\n      return false;\n    }\n  }\n  \n  /**\n   * Rename a chat session\n   */\n  async renameSession(sessionId: string, newTitle: string): Promise<boolean> {\n    await this.loadIndex();\n    \n    const session = await this.loadSession(sessionId);\n    if (!session) {\n      return false;\n    }\n    \n    session.title = newTitle;\n    session.updatedAt = Date.now();\n    \n    // Save updated session\n    const sessionPath = this.getSessionPath(sessionId);\n    await atomicWriteJSON(sessionPath, session);\n    \n    // Update index\n    const indexEntry = this.index!.sessions.find(s => s.id === sessionId);\n    if (indexEntry) {\n      indexEntry.title = newTitle;\n      indexEntry.updatedAt = session.updatedAt;\n      await this.saveIndex();\n    }\n    \n    return true;\n  }\n  \n  /**\n   * Archive a chat session\n   */\n  async archiveSession(sessionId: string): Promise<boolean> {\n    await this.loadIndex();\n    \n    const session = await this.loadSession(sessionId);\n    if (!session) {\n      return false;\n    }\n    \n    session.archived = true;\n    session.updatedAt = Date.now();\n    \n    // Save updated session\n    const sessionPath = this.getSessionPath(sessionId);\n    await atomicWriteJSON(sessionPath, session);\n    \n    // Update index\n    const indexEntry = this.index!.sessions.find(s => s.id === sessionId);\n    if (indexEntry) {\n      indexEntry.archived = true;\n      indexEntry.updatedAt = session.updatedAt;\n      await this.saveIndex();\n    }\n    \n    return true;\n  }\n  \n  /**\n   * Unarchive a chat session\n   */\n  async unarchiveSession(sessionId: string): Promise<boolean> {\n    await this.loadIndex();\n    \n    const session = await this.loadSession(sessionId);\n    if (!session) {\n      return false;\n    }\n    \n    session.archived = false;\n    session.updatedAt = Date.now();\n    \n    // Save updated session\n    const sessionPath = this.getSessionPath(sessionId);\n    await atomicWriteJSON(sessionPath, session);\n    \n    // Update index\n    const indexEntry = this.index!.sessions.find(s => s.id === sessionId);\n    if (indexEntry) {\n      indexEntry.archived = false;\n      indexEntry.updatedAt = session.updatedAt;\n      await this.saveIndex();\n    }\n    \n    return true;\n  }\n  \n  /**\n   * Export a chat session as JSON\n   */\n  async exportSession(sessionId: string): Promise<string | null> {\n    const session = await this.loadSession(sessionId);\n    if (!session) {\n      return null;\n    }\n    \n    return JSON.stringify(session, null, 2);\n  }\n  \n  /**\n   * Get statistics about chat sessions\n   */\n  async getStats(): Promise<{\n    total: number;\n    active: number;\n    archived: number;\n    totalMessages: number;\n  }> {\n    await this.loadIndex();\n    \n    const total = this.index!.sessions.length;\n    const archived = this.index!.sessions.filter(s => s.archived).length;\n    const active = total - archived;\n    const totalMessages = this.index!.sessions.reduce((sum, s) => sum + s.messageCount, 0);\n    \n    return { total, active, archived, totalMessages };\n  }\n  \n  /**\n   * Prune old sessions (older than N days)\n   */\n  async pruneOldSessions(daysToKeep: number = 90): Promise<number> {\n    await this.loadIndex();\n    \n    const cutoff = Date.now() - (daysToKeep * 24 * 60 * 60 * 1000);\n    const toDelete = this.index!.sessions.filter(s => s.updatedAt < cutoff);\n    \n    for (const session of toDelete) {\n      await this.deleteSession(session.id);\n    }\n    \n    return toDelete.length;\n  }\n}\n\n// ============================================================================\n// Singleton Management\n// ============================================================================\n\nconst chatStores: Map<string, ChatStore> = new 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-{"version":3,"sources":["../src/guardian/hypothesis.ts"],"sourcesContent":["/**\n * Hypothesis System - Self-improving hypothesis generation and validation\n * \n * Features:\n * - Generate hypotheses from patterns\n * - Track evidence for/against hypotheses\n * - Auto-validate/invalidate based on evidence\n * - Adjust confidence over time\n * - Learn from hypothesis outcomes\n */\n\nimport type { Hypothesis } from './guardian-state.js';\nimport { getProjectState } from './guardian-state.js';\nimport { getInsightStore, type GuardianInsight } from './insight-store.js';\nimport { searchIssues } from '../memory/issue-store.js';\nimport { dirname } from 'path';\n\n// ============================================================================\n// Types\n// ============================================================================\n\n/**\n * Hypothesis template for auto-generation\n */\nexport interface HypothesisTemplate {\n  category: 'timing' | 'pattern' | 'team' | 'code' | 'general';\n  statement: string;\n  testCriteria: string;\n  minConfidence: number;\n  dataRequired: string[];\n}\n\n/**\n * Evidence for a hypothesis\n */\nexport interface HypothesisEvidence {\n  type: 'supporting' | 'contradicting';\n  description: string;\n  weight: number; // 0-1\n  timestamp: string;\n}\n\n/**\n * Hypothesis analysis result\n */\nexport interface HypothesisAnalysis {\n  hypothesis: Hypothesis;\n  recentEvidence: HypothesisEvidence[];\n  confidenceChange: number;\n  statusChange?: 'validated' | 'invalidated';\n  actionRequired: boolean;\n}\n\n// ============================================================================\n// Hypothesis Templates\n// ============================================================================\n\nconst HYPOTHESIS_TEMPLATES: HypothesisTemplate[] = [\n  {\n    category: 'timing',\n    statement: 'Issues spike after weekend deployments',\n    testCriteria: 'Compare Monday issue counts to other days',\n    minConfidence: 0.3,\n    dataRequired: ['issue_timestamps', 'deployment_data'],\n  },\n  {\n    category: 'timing',\n    statement: 'Code quality declines on Fridays',\n    testCriteria: 'Compare Friday issue introduction rate to weekly average',\n    minConfidence: 0.3,\n    dataRequired: ['issue_timestamps'],\n  },\n  {\n    category: 'pattern',\n    statement: 'Auth-related code has the highest incident rate',\n    testCriteria: 'Compare auth/ issue count to other directories',\n    minConfidence: 0.4,\n    dataRequired: ['issue_files'],\n  },\n  {\n    category: 'pattern',\n    statement: 'Security issues cluster in specific directories',\n    testCriteria: 'Check if security issues are concentrated (>50% in <3 dirs)',\n    minConfidence: 0.4,\n    dataRequired: ['issue_files', 'issue_agents'],\n  },\n  {\n    category: 'code',\n    statement: 'Files with multiple authors have more issues',\n    testCriteria: 'Correlate file author count with issue count',\n    minConfidence: 0.4,\n    dataRequired: ['issue_files', 'git_blame'],\n  },\n  {\n    category: 'code',\n    statement: 'Recently modified files are more likely to have issues',\n    testCriteria: 'Compare issue rate for recent vs old files',\n    minConfidence: 0.3,\n    dataRequired: ['issue_timestamps', 'file_modification_times'],\n  },\n  {\n    category: 'pattern',\n    statement: 'Critical issues often come in clusters',\n    testCriteria: 'Check temporal clustering of critical issues',\n    minConfidence: 0.3,\n    dataRequired: ['issue_timestamps', 'issue_severities'],\n  },\n];\n\n// ============================================================================\n// HypothesisEngine Class\n// ============================================================================\n\n/**\n * Engine for generating and validating hypotheses\n */\nexport class HypothesisEngine {\n  private projectPath: string;\n  private projectState;\n  private insightStore;\n  \n  constructor(projectPath: string) {\n    this.projectPath = projectPath;\n    this.projectState = getProjectState(projectPath);\n    this.insightStore = getInsightStore(projectPath);\n  }\n  \n  /**\n   * Create a new hypothesis\n   */\n  async createHypothesis(statement: string, options?: {\n    category?: Hypothesis['category'];\n    testCriteria?: string;\n    initialConfidence?: number;\n  }): Promise<Hypothesis> {\n    const hypothesis: Hypothesis = {\n      id: `hyp-${Date.now()}-${Math.random().toString(36).slice(2, 8)}`,\n      statement,\n      confidence: options?.initialConfidence ?? 0.5,\n      status: 'proposed',\n      evidence: [],\n      createdAt: new Date().toISOString(),\n      updatedAt: new Date().toISOString(),\n      testCriteria: options?.testCriteria,\n      category: options?.category ?? 'general',\n    };\n    \n    await this.projectState.addHypothesis(hypothesis);\n    \n    return hypothesis;\n  }\n  \n  /**\n   * Auto-generate hypotheses based on detected patterns\n   */\n  async autoGenerateHypotheses(): Promise<Hypothesis[]> {\n    const generated: Hypothesis[] = [];\n    \n    try {\n      // Get existing hypotheses to avoid duplicates\n      await this.projectState.load();\n      const existing = this.projectState.getAllHypotheses();\n      const existingStatements = new Set(existing.map(h => h.statement.toLowerCase()));\n      \n      // Get data for pattern detection\n      const issues = await searchIssues('', {\n        workDir: this.projectPath,\n        limit: 500,\n        includeResolved: true,\n      });\n      \n      if (issues.length < 10) {\n        return generated; // Not enough data\n      }\n      \n      // Check each template for applicability\n      for (const template of HYPOTHESIS_TEMPLATES) {\n        // Skip if already have similar hypothesis\n        if (existingStatements.has(template.statement.toLowerCase())) {\n          continue;\n        }\n        \n        // Check if we have enough evidence to propose this hypothesis\n        const evidence = await this.gatherInitialEvidence(template, issues);\n        \n        if (evidence.length > 0 && evidence[0]!.weight >= template.minConfidence) {\n          const hypothesis = await this.createHypothesis(template.statement, {\n            category: template.category,\n            testCriteria: template.testCriteria,\n            initialConfidence: evidence[0]!.weight,\n          });\n          \n          // Add initial evidence\n          for (const e of evidence) {\n            await this.projectState.addEvidence(hypothesis.id, e);\n          }\n          \n          generated.push(hypothesis);\n          \n          // Limit to 2 new hypotheses per run\n          if (generated.length >= 2) break;\n        }\n      }\n      \n    } catch (error) {\n      console.error('Failed to auto-generate hypotheses:', error);\n    }\n    \n    return generated;\n  }\n  \n  /**\n   * Use Claude AI to generate novel hypotheses from observed patterns\n   * This enables fully agentic hypothesis creation based on actual codebase observations\n   */\n  async generateHypothesesWithAI(context: {\n    recentIssues?: any[];\n    patterns?: string[];\n    observations?: string[];\n  }): Promise<Hypothesis[]> {\n    const { isAIAvailable, runAIAnalysis } = await import('../ai/client.js');\n    \n    if (!isAIAvailable()) {\n      return []; // Fall back to template-based generation\n    }\n    \n    const generated: Hypothesis[] = [];\n    \n    try {\n      // Get existing hypotheses to avoid duplicates\n      await this.projectState.load();\n      const existing = this.projectState.getAllHypotheses();\n      const existingStatements = existing.map(h => h.statement);\n      \n      // Get recent issue data\n      const issues = context.recentIssues || await searchIssues('', {\n        workDir: this.projectPath,\n        limit: 100,\n        includeResolved: true,\n      });\n      \n      if (issues.length < 5) {\n        return generated; // Not enough data for AI\n      }\n      \n      // Build context for Claude\n      const issuesSummary = this.summarizeIssuesForAI(issues);\n      const patternsSummary = context.patterns?.join('\\n') || 'No explicit patterns provided';\n      const observationsSummary = context.observations?.join('\\n') || 'No explicit observations provided';\n      \n      const prompt = `You are an AI agent observing a codebase over time. Based on the patterns below, generate 1-3 testable hypotheses about this codebase's quality patterns.\n\n## Recent Issues Summary\n${issuesSummary}\n\n## Observed Patterns\n${patternsSummary}\n\n## Additional Observations\n${observationsSummary}\n\n## Existing Hypotheses (avoid duplicates)\n${existingStatements.length > 0 ? existingStatements.map(s => `- ${s}`).join('\\n') : 'None yet'}\n\nGenerate hypotheses that are:\n1. Specific and testable (can be validated with data)\n2. Actionable (if validated, can guide improvements)\n3. Novel (not duplicates of existing hypotheses)\n4. Based on real patterns in the data above\n\nReturn ONLY a JSON array of hypotheses. Each hypothesis must have:\n- \"statement\": Clear, concise hypothesis statement\n- \"category\": One of: \"timing\", \"pattern\", \"team\", \"code\", \"general\"\n- \"testCriteria\": How to test this hypothesis\n- \"confidence\": Initial confidence (0-1)\n- \"reasoning\": Why you think this hypothesis is worth testing\n\nExample format:\n[\n  {\n    \"statement\": \"Authentication code changes correlate with security issues\",\n    \"category\": \"pattern\",\n    \"testCriteria\": \"Track auth file changes and subsequent security issue rates\",\n    \"confidence\": 0.6,\n    \"reasoning\": \"65% of security issues occur in files modified in the past week\"\n  }\n]\n\nReturn empty array [] if no novel hypotheses can be generated from the data.`;\n      \n      const result = await runAIAnalysis({\n        systemPrompt: 'You are an expert code quality analyst who identifies patterns and generates testable hypotheses.',\n        userPrompt: prompt,\n        maxTokens: 1024,\n        temperature: 0.7, // Higher temperature for creative hypothesis generation\n      });\n      \n      if (!result.success || !result.content.trim()) {\n        return generated;\n      }\n      \n      // Parse AI response\n      let aiHypotheses: Array<{\n        statement: string;\n        category: Hypothesis['category'];\n        testCriteria: string;\n        confidence: number;\n        reasoning: string;\n      }> = [];\n      \n      try {\n        const cleaned = result.content.replace(/```json?\\n?|\\n?```/g, '').trim();\n        aiHypotheses = JSON.parse(cleaned);\n        if (!Array.isArray(aiHypotheses)) aiHypotheses = [];\n      } catch {\n        return generated; // AI response wasn't valid JSON\n      }\n      \n      // Create hypotheses from AI suggestions\n      for (const aiHypo of aiHypotheses.slice(0, 3)) {\n        // Check for duplicates\n        const isDuplicate = existingStatements.some(existing => \n          existing.toLowerCase().includes(aiHypo.statement.toLowerCase().slice(0, 30))\n        );\n        \n        if (isDuplicate) continue;\n        \n        const hypothesis = await this.createHypothesis(aiHypo.statement, {\n          category: aiHypo.category,\n          testCriteria: aiHypo.testCriteria,\n          initialConfidence: Math.max(0.3, Math.min(0.7, aiHypo.confidence)),\n        });\n        \n        // Add AI reasoning as initial evidence\n        await this.projectState.addEvidence(hypothesis.id, {\n          type: 'supporting',\n          description: `AI observed: ${aiHypo.reasoning}`,\n          weight: aiHypo.confidence,\n        });\n        \n        generated.push(hypothesis);\n      }\n      \n    } catch (error) {\n      console.error('Failed to generate hypotheses with AI:', error);\n    }\n    \n    return generated;\n  }\n  \n  /**\n   * Summarize issues for AI context\n   */\n  private summarizeIssuesForAI(issues: Array<{ issue: any; score: number }>): string {\n    const totalIssues = issues.length;\n    \n    // Severity breakdown\n    const severityCounts: Record<string, number> = {};\n    for (const { issue } of issues) {\n      severityCounts[issue.severity] = (severityCounts[issue.severity] || 0) + 1;\n    }\n    \n    // Agent breakdown\n    const agentCounts: Record<string, number> = {};\n    for (const { issue } of issues) {\n      agentCounts[issue.agent] = (agentCounts[issue.agent] || 0) + 1;\n    }\n    \n    // File/directory patterns\n    const fileCounts: Record<string, number> = {};\n    for (const { issue } of issues) {\n      const dir = dirname(issue.file);\n      fileCounts[dir] = (fileCounts[dir] || 0) + 1;\n    }\n    \n    // Time patterns\n    const dayOfWeekCounts: Record<number, number> = {};\n    for (const { issue } of issues) {\n      const date = new Date(issue.timestamp);\n      const day = date.getDay();\n      dayOfWeekCounts[day] = (dayOfWeekCounts[day] || 0) + 1;\n    }\n    \n    const dayNames = ['Sun', 'Mon', 'Tue', 'Wed', 'Thu', 'Fri', 'Sat'];\n    const dayDistribution = Object.entries(dayOfWeekCounts)\n      .sort(([a], [b]) => Number(a) - Number(b))\n      .map(([day, count]) => `${dayNames[Number(day)]}: ${count}`)\n      .join(', ');\n    \n    const topDirs = Object.entries(fileCounts)\n      .sort(([, a], [, b]) => b - a)\n      .slice(0, 5)\n      .map(([dir, count]) => `${dir}: ${count}`)\n      .join(', ');\n    \n    const topAgents = Object.entries(agentCounts)\n      .sort(([, a], [, b]) => b - a)\n      .slice(0, 5)\n      .map(([agent, count]) => `${agent}: ${count}`)\n      .join(', ');\n    \n    return `Total Issues: ${totalIssues}\nSeverities: ${Object.entries(severityCounts).map(([s, c]) => `${s}=${c}`).join(', ')}\nTop Agents: ${topAgents}\nTop Directories: ${topDirs}\nDay Distribution: ${dayDistribution}`;\n  }\n  \n  /**\n   * Gather initial evidence for a hypothesis template\n   */\n  private async gatherInitialEvidence(\n    template: HypothesisTemplate,\n    issues: Array<{ issue: any; score: number }>\n  ): Promise<HypothesisEvidence[]> {\n    const evidence: HypothesisEvidence[] = [];\n    \n    switch (template.category) {\n      case 'timing':\n        evidence.push(...this.analyzeTimingPatterns(template, issues));\n        break;\n      case 'pattern':\n        evidence.push(...this.analyzeLocationPatterns(template, issues));\n        break;\n      case 'code':\n        evidence.push(...this.analyzeCodePatterns(template, issues));\n        break;\n    }\n    \n    return evidence;\n  }\n  \n  /**\n   * Analyze timing patterns in issues\n   */\n  private analyzeTimingPatterns(\n    template: HypothesisTemplate,\n    issues: Array<{ issue: any; score: number }>\n  ): HypothesisEvidence[] {\n    const evidence: HypothesisEvidence[] = [];\n    \n    // Analyze day-of-week patterns\n    const dayOfWeekCounts: Record<number, number> = {};\n    for (const { issue } of issues) {\n      const date = new Date(issue.timestamp);\n      const day = date.getDay();\n      dayOfWeekCounts[day] = (dayOfWeekCounts[day] || 0) + 1;\n    }\n    \n    // Check for Friday pattern\n    if (template.statement.includes('Friday')) {\n      const fridayCount = dayOfWeekCounts[5] || 0;\n      const avgOtherDays = (Object.values(dayOfWeekCounts).reduce((a, b) => a + b, 0) - fridayCount) / 4;\n      \n      if (fridayCount > avgOtherDays * 1.5) {\n        evidence.push({\n          type: 'supporting',\n          description: `Friday has ${((fridayCount / avgOtherDays - 1) * 100).toFixed(0)}% more issues than average`,\n          weight: Math.min(0.8, 0.3 + (fridayCount / avgOtherDays - 1) * 0.2),\n          timestamp: new Date().toISOString(),\n        });\n      } else {\n        evidence.push({\n          type: 'contradicting',\n          description: 'Friday issue count is not significantly higher',\n          weight: 0.3,\n          timestamp: new Date().toISOString(),\n        });\n      }\n    }\n    \n    // Check for Monday/weekend pattern\n    if (template.statement.includes('weekend') || template.statement.includes('Monday')) {\n      const mondayCount = dayOfWeekCounts[1] || 0;\n      const avgOtherDays = (Object.values(dayOfWeekCounts).reduce((a, b) => a + b, 0) - mondayCount) / 4;\n      \n      if (mondayCount > avgOtherDays * 1.5) {\n        evidence.push({\n          type: 'supporting',\n          description: `Monday has ${((mondayCount / avgOtherDays - 1) * 100).toFixed(0)}% more issues than average`,\n          weight: Math.min(0.8, 0.3 + (mondayCount / avgOtherDays - 1) * 0.2),\n          timestamp: new Date().toISOString(),\n        });\n      }\n    }\n    \n    return evidence;\n  }\n  \n  /**\n   * Analyze location patterns in issues\n   */\n  private analyzeLocationPatterns(\n    template: HypothesisTemplate,\n    issues: Array<{ issue: any; score: number }>\n  ): HypothesisEvidence[] {\n    const evidence: HypothesisEvidence[] = [];\n    \n    // Analyze directory distribution\n    const dirCounts: Record<string, number> = {};\n    for (const { issue } of issues) {\n      const dir = dirname(issue.file);\n      dirCounts[dir] = (dirCounts[dir] || 0) + 1;\n    }\n    \n    const sortedDirs = Object.entries(dirCounts)\n      .sort(([, a], [, b]) => b - a);\n    \n    // Check for auth pattern\n    if (template.statement.includes('Auth')) {\n      const authDirs = sortedDirs.filter(([dir]) => \n        dir.toLowerCase().includes('auth') || \n        dir.toLowerCase().includes('login') ||\n        dir.toLowerCase().includes('session')\n      );\n      \n      const authCount = authDirs.reduce((sum, [, count]) => sum + count, 0);\n      const percentage = (authCount / issues.length) * 100;\n      \n      if (percentage >= 20) {\n        evidence.push({\n          type: 'supporting',\n          description: `Auth-related code has ${percentage.toFixed(0)}% of issues`,\n          weight: Math.min(0.85, 0.4 + percentage / 100),\n          timestamp: new Date().toISOString(),\n        });\n      }\n    }\n    \n    // Check for clustering pattern\n    if (template.statement.includes('cluster')) {\n      const topThreeDirs = sortedDirs.slice(0, 3);\n      const topThreeCount = topThreeDirs.reduce((sum, [, count]) => sum + count, 0);\n      const percentage = (topThreeCount / issues.length) * 100;\n      \n      if (percentage >= 50) {\n        evidence.push({\n          type: 'supporting',\n          description: `Top 3 directories have ${percentage.toFixed(0)}% of issues`,\n          weight: Math.min(0.8, 0.3 + percentage / 100),\n          timestamp: new Date().toISOString(),\n        });\n      }\n    }\n    \n    return evidence;\n  }\n  \n  /**\n   * Analyze code patterns\n   */\n  private analyzeCodePatterns(\n    template: HypothesisTemplate,\n    issues: Array<{ issue: any; score: number }>\n  ): HypothesisEvidence[] {\n    const evidence: HypothesisEvidence[] = [];\n    \n    // Analyze temporal clustering (critical issues in bursts)\n    if (template.statement.includes('cluster')) {\n      const criticalIssues = issues.filter(r => r.issue.severity === 'critical');\n      \n      if (criticalIssues.length >= 3) {\n        // Check if critical issues are clustered in time\n        const timestamps = criticalIssues\n          .map(r => new Date(r.issue.timestamp).getTime())\n          .sort((a, b) => a - b);\n        \n        let clusteredCount = 0;\n        for (let i = 1; i < timestamps.length; i++) {\n          // If within 24 hours of previous\n          if (timestamps[i]! - timestamps[i - 1]! < 24 * 60 * 60 * 1000) {\n            clusteredCount++;\n          }\n        }\n        \n        const clusterRatio = clusteredCount / (timestamps.length - 1);\n        \n        if (clusterRatio >= 0.5) {\n          evidence.push({\n            type: 'supporting',\n            description: `${(clusterRatio * 100).toFixed(0)}% of critical issues occur within 24h of another`,\n            weight: Math.min(0.75, 0.3 + clusterRatio * 0.4),\n            timestamp: new Date().toISOString(),\n          });\n        }\n      }\n    }\n    \n    return evidence;\n  }\n  \n  /**\n   * Update confidence scores based on new data\n   */\n  async updateConfidenceFromOutcomes(): Promise<HypothesisAnalysis[]> {\n    const analyses: HypothesisAnalysis[] = [];\n    \n    try {\n      await this.projectState.load();\n      const activeHypotheses = this.projectState.getActiveHypotheses();\n      \n      for (const hypothesis of activeHypotheses) {\n        const analysis = await this.analyzeHypothesis(hypothesis);\n        analyses.push(analysis);\n        \n        // Create insight if hypothesis was validated or invalidated\n        if (analysis.statusChange && this.insightStore.canCreateInsight('hypothesis-update')) {\n          const insight = this.createHypothesisInsight(analysis);\n          await this.insightStore.addInsight(insight);\n          await this.insightStore.markInsightCreated('hypothesis-update');\n        }\n      }\n      \n      // Update hypothesis accuracy metric\n      await this.projectState.updateHypothesisAccuracy();\n      \n    } catch (error) {\n      console.error('Failed to update hypothesis confidence:', error);\n    }\n    \n    return analyses;\n  }\n  \n  /**\n   * Analyze a single hypothesis\n   */\n  private async analyzeHypothesis(hypothesis: Hypothesis): Promise<HypothesisAnalysis> {\n    // Get recent issues for new evidence\n    const issues = await searchIssues('', {\n      workDir: this.projectPath,\n      limit: 100,\n      includeResolved: false,\n    });\n    \n    // Find the matching template\n    const template = HYPOTHESIS_TEMPLATES.find(t => \n      t.statement.toLowerCase() === hypothesis.statement.toLowerCase()\n    );\n    \n    const recentEvidence: HypothesisEvidence[] = [];\n    \n    if (template) {\n      recentEvidence.push(...await this.gatherInitialEvidence(template, issues));\n    } else {\n      // For user-created hypotheses, use semantic evidence gathering\n      recentEvidence.push(...this.gatherSemanticEvidence(hypothesis, issues));\n    }\n    \n    // Calculate confidence change\n    const oldConfidence = hypothesis.confidence;\n    let newConfidence = oldConfidence;\n    \n    for (const evidence of recentEvidence) {\n      if (evidence.type === 'supporting') {\n        newConfidence = Math.min(1, newConfidence + evidence.weight * 0.1);\n      } else {\n        newConfidence = Math.max(0, newConfidence - evidence.weight * 0.1);\n      }\n    }\n    \n    // Determine status change\n    let statusChange: 'validated' | 'invalidated' | undefined;\n    \n    if (newConfidence >= 0.8 && hypothesis.evidence.length >= 3) {\n      statusChange = 'validated';\n      await this.projectState.updateHypothesis(hypothesis.id, {\n        status: 'validated',\n        confidence: newConfidence,\n        validatedAt: new Date().toISOString(),\n      });\n    } else if (newConfidence <= 0.2 && hypothesis.evidence.length >= 3) {\n      statusChange = 'invalidated';\n      await this.projectState.updateHypothesis(hypothesis.id, {\n        status: 'invalidated',\n        confidence: newConfidence,\n      });\n    } else {\n      // Just update confidence\n      await this.projectState.updateHypothesis(hypothesis.id, {\n        confidence: newConfidence,\n      });\n    }\n    \n    // Add new evidence\n    for (const evidence of recentEvidence) {\n      await this.projectState.addEvidence(hypothesis.id, evidence);\n    }\n    \n    const analysis: HypothesisAnalysis = {\n      hypothesis: { ...hypothesis, confidence: newConfidence },\n      recentEvidence,\n      confidenceChange: newConfidence - oldConfidence,\n      actionRequired: statusChange !== undefined,\n    };\n    \n    if (statusChange) {\n      analysis.statusChange = statusChange;\n    }\n    \n    return analysis;\n  }\n  \n  /**\n   * Gather evidence for user-created hypotheses using semantic matching\n   * \n   * This enables agentic tracking for natural language hypotheses like:\n   * - \"Mondays have more bugs than Fridays\"\n   * - \"Code reviews reduce bug rate\"\n   * - \"Security issues cluster in auth code\"\n   */\n  private gatherSemanticEvidence(\n    hypothesis: Hypothesis,\n    issues: Array<{ issue: any; score: number }>\n  ): HypothesisEvidence[] {\n    const evidence: HypothesisEvidence[] = [];\n    const stmt = hypothesis.statement.toLowerCase();\n    \n    // Time-based hypotheses (days of week patterns)\n    if (stmt.includes('monday') || stmt.includes('friday') || stmt.includes('weekend') ||\n        stmt.includes('morning') || stmt.includes('afternoon')) {\n      const dayNames = ['sunday', 'monday', 'tuesday', 'wednesday', 'thursday', 'friday', 'saturday'];\n      const dayOfWeekCounts: Record<number, number> = { 0: 0, 1: 0, 2: 0, 3: 0, 4: 0, 5: 0, 6: 0 };\n      \n      for (const { issue } of issues) {\n        const date = new Date(issue.timestamp);\n        const day = date.getDay();\n        dayOfWeekCounts[day] = (dayOfWeekCounts[day] || 0) + 1;\n      }\n      \n      const totalIssues = Object.values(dayOfWeekCounts).reduce((a, b) => a + b, 0);\n      const avgPerDay = totalIssues / 7;\n      \n      // Check each day mentioned\n      for (let dayIdx = 0; dayIdx < 7; dayIdx++) {\n        const dayName = dayNames[dayIdx]!;\n        if (stmt.includes(dayName)) {\n          const dayCount = dayOfWeekCounts[dayIdx] || 0;\n          \n          if (stmt.includes('more') || stmt.includes('higher') || stmt.includes('spike')) {\n            // Testing if this day has MORE issues\n            if (dayCount > avgPerDay * 1.3) {\n              evidence.push({\n                type: 'supporting',\n                description: `${dayName.charAt(0).toUpperCase() + dayName.slice(1)} has ${dayCount} issues (${((dayCount/avgPerDay - 1) * 100).toFixed(0)}% above average)`,\n                weight: Math.min(0.7, 0.3 + (dayCount / avgPerDay - 1) * 0.3),\n                timestamp: new Date().toISOString(),\n              });\n            } else {\n              evidence.push({\n                type: 'contradicting',\n                description: `${dayName.charAt(0).toUpperCase() + dayName.slice(1)} has average or below average issue count`,\n                weight: 0.3,\n                timestamp: new Date().toISOString(),\n              });\n            }\n          } else if (stmt.includes('fewer') || stmt.includes('less') || stmt.includes('reduce')) {\n            // Testing if this day has FEWER issues\n            if (dayCount < avgPerDay * 0.7) {\n              evidence.push({\n                type: 'supporting',\n                description: `${dayName.charAt(0).toUpperCase() + dayName.slice(1)} has ${dayCount} issues (${((1 - dayCount/avgPerDay) * 100).toFixed(0)}% below average)`,\n                weight: Math.min(0.7, 0.3 + (1 - dayCount / avgPerDay) * 0.3),\n                timestamp: new Date().toISOString(),\n              });\n            }\n          }\n        }\n      }\n    }\n    \n    // Code review hypotheses\n    if (stmt.includes('review') || stmt.includes('pr') || stmt.includes('pull request')) {\n      // Look for patterns in reviewed vs unreviewed code (approximated by commit patterns)\n      const recentIssues = issues.slice(0, 30); // Most recent\n      const olderIssues = issues.slice(30); // Older\n      \n      if (recentIssues.length >= 10 && olderIssues.length >= 10) {\n        const recentRate = recentIssues.length;\n        const olderRate = olderIssues.length;\n        \n        if (stmt.includes('reduce') || stmt.includes('fewer') || stmt.includes('less')) {\n          if (recentRate < olderRate) {\n            evidence.push({\n              type: 'supporting',\n              description: `Recent period has ${((1 - recentRate/olderRate) * 100).toFixed(0)}% fewer issues`,\n              weight: Math.min(0.6, 0.3 + (1 - recentRate/olderRate) * 0.3),\n              timestamp: new Date().toISOString(),\n            });\n          } else {\n            evidence.push({\n              type: 'contradicting',\n              description: `Issue rate has not decreased recently`,\n              weight: 0.2,\n              timestamp: new Date().toISOString(),\n            });\n          }\n        }\n      }\n    }\n    \n    // Directory/location clustering hypotheses\n    if (stmt.includes('cluster') || stmt.includes('concentrate') || stmt.includes('auth') ||\n        stmt.includes('specific') || stmt.includes('certain files')) {\n      const dirCounts: Record<string, number> = {};\n      for (const { issue } of issues) {\n        const dir = dirname(issue.file);\n        dirCounts[dir] = (dirCounts[dir] || 0) + 1;\n      }\n      \n      const sortedDirs = Object.entries(dirCounts).sort(([, a], [, b]) => b - a);\n      const topThreeCount = sortedDirs.slice(0, 3).reduce((sum, [, count]) => sum + count, 0);\n      const totalCount = issues.length;\n      const concentration = topThreeCount / totalCount;\n      \n      if (concentration >= 0.5) {\n        evidence.push({\n          type: 'supporting',\n          description: `Top 3 directories have ${(concentration * 100).toFixed(0)}% of issues (concentrated)`,\n          weight: Math.min(0.7, 0.3 + concentration * 0.4),\n          timestamp: new Date().toISOString(),\n        });\n      } else {\n        evidence.push({\n          type: 'contradicting',\n          description: `Issues are distributed across many directories`,\n          weight: 0.3,\n          timestamp: new Date().toISOString(),\n        });\n      }\n    }\n    \n    // Severity trend hypotheses\n    if (stmt.includes('critical') || stmt.includes('security') || stmt.includes('severity')) {\n      const criticalCount = issues.filter(r => r.issue.severity === 'critical').length;\n      const seriousCount = issues.filter(r => r.issue.severity === 'serious').length;\n      const highSeverityRatio = (criticalCount + seriousCount) / issues.length;\n      \n      if (stmt.includes('increase') || stmt.includes('more') || stmt.includes('rise')) {\n        if (highSeverityRatio > 0.3) {\n          evidence.push({\n            type: 'supporting',\n            description: `${(highSeverityRatio * 100).toFixed(0)}% of issues are high severity`,\n            weight: Math.min(0.7, 0.3 + highSeverityRatio),\n            timestamp: new Date().toISOString(),\n          });\n        }\n      } else if (stmt.includes('decrease') || stmt.includes('fewer') || stmt.includes('reduce')) {\n        if (highSeverityRatio < 0.2) {\n          evidence.push({\n            type: 'supporting',\n            description: `Only ${(highSeverityRatio * 100).toFixed(0)}% of issues are high severity`,\n            weight: 0.5,\n            timestamp: new Date().toISOString(),\n          });\n        }\n      }\n    }\n    \n    // Agent/skill specific hypotheses\n    const agents = ['security', 'performance', 'accessibility', 'test', 'typecheck', 'bug-finding'];\n    for (const agent of agents) {\n      if (stmt.includes(agent) || stmt.includes(agent.replace('-', ' '))) {\n        const agentIssues = issues.filter(r => r.issue.agent === agent);\n        const agentRatio = agentIssues.length / issues.length;\n        \n        if (stmt.includes('most') || stmt.includes('majority') || stmt.includes('main')) {\n          if (agentRatio > 0.4) {\n            evidence.push({\n              type: 'supporting',\n              description: `${agent} accounts for ${(agentRatio * 100).toFixed(0)}% of issues`,\n              weight: Math.min(0.7, 0.3 + agentRatio),\n              timestamp: new Date().toISOString(),\n            });\n          } else {\n            evidence.push({\n              type: 'contradicting',\n              description: `${agent} only accounts for ${(agentRatio * 100).toFixed(0)}% of issues`,\n              weight: 0.3,\n              timestamp: new Date().toISOString(),\n            });\n          }\n        }\n      }\n    }\n    \n    return evidence;\n  }\n  \n  /**\n   * Create an insight for hypothesis status change\n   */\n  private createHypothesisInsight(analysis: HypothesisAnalysis): GuardianInsight {\n    const isValidated = analysis.statusChange === 'validated';\n    \n    return {\n      id: `insight-hyp-${analysis.hypothesis.id}`,\n      type: isValidated ? 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package/dist/chunk-G74XEI7K.js.map

@@ -1 +0,0 @@
-{"version":3,"sources":["../src/memory/global-memory.ts","../src/guardian/gotcha-predictor.ts"],"sourcesContent":["/**\n * Cross-Project Memory\n * \n * Stores and retrieves patterns across all projects.\n * Location: ~/.trie/memory/\n * \n * Phase 1 Hardening:\n * - SHA256 hashing for pattern IDs\n * - Atomic writes to prevent corruption\n * - Rotational backups for recovery\n * - Zod validation for data integrity\n */\n\nimport { mkdir, writeFile, readFile, readdir } from 'fs/promises';\nimport { createHash } from 'crypto';\nimport { existsSync } from 'fs';\nimport { join } from 'path';\nimport { homedir } from 'os';\nimport type { Issue } from '../types/index.js';\nimport { atomicWriteJSON } from '../utils/atomic-write.js';\nimport { BackupManager } from '../utils/backup-manager.js';\nimport { GlobalPatternsIndexSchema, safeParseAndValidate } from './validation.js';\n\nconst GLOBAL_TRIE_DIR = join(homedir(), '.trie');\nconst GLOBAL_MEMORY_DIR = join(GLOBAL_TRIE_DIR, 'memory');\n\nexport interface GlobalPattern {\n  id: string;\n  pattern: string;\n  description: string;\n  severity: string;\n  agent: string;\n  occurrences: number;\n  projects: string[];\n  firstSeen: string;\n  lastSeen: string;\n  fixApplied?: {\n    project: string;\n    timestamp: string;\n    fix: string;\n  };\n}\n\nexport interface ProjectSummary {\n  name: string;\n  path: string;\n  lastScan: string;\n  totalIssues: number;\n  patterns: string[];\n}\n\n/**\n * Record issues to global memory\n */\nexport async function recordToGlobalMemory(\n  issues: Issue[],\n  projectName: string,\n  projectPath: string\n): Promise<void> {\n  await mkdir(GLOBAL_MEMORY_DIR, { recursive: true });\n  await mkdir(join(GLOBAL_MEMORY_DIR, 'projects'), { recursive: true });\n\n  const patterns = await loadGlobalPatterns();\n  const now = new Date().toISOString();\n\n  for (const issue of issues) {\n    const patternId = extractPatternId(issue);\n    const existing = patterns.find(p => p.id === patternId);\n\n    if (existing) {\n      existing.occurrences++;\n      existing.lastSeen = now;\n      if (!existing.projects.includes(projectName)) {\n        existing.projects.push(projectName);\n      }\n    } else {\n      patterns.push({\n        id: patternId,\n        pattern: issue.issue.slice(0, 200),\n        description: issue.fix.slice(0, 200),\n        severity: issue.severity,\n        agent: issue.agent,\n        occurrences: 1,\n        projects: [projectName],\n        firstSeen: now,\n        lastSeen: now,\n      });\n    }\n  }\n\n  await saveGlobalPatterns(patterns);\n\n  const summaryPath = join(GLOBAL_MEMORY_DIR, 'projects', `${sanitizeName(projectName)}.json`);\n  const summary: ProjectSummary = {\n    name: projectName,\n    path: projectPath,\n    lastScan: now,\n    totalIssues: issues.length,\n    patterns: [...new Set(issues.map(i => extractPatternId(i)))],\n  };\n  \n  // Use atomic write for project summary\n  await atomicWriteJSON(summaryPath, summary);\n}\n\n/**\n * Find patterns that appear across multiple projects\n */\nexport async function findCrossProjectPatterns(\n  minOccurrences: number = 2\n): Promise<GlobalPattern[]> {\n  const patterns = await loadGlobalPatterns();\n  return patterns\n    .filter(p => p.projects.length >= minOccurrences)\n    .sort((a, b) => b.occurrences - 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new Date(a.lastScan).getTime()\n    );\n  } catch {\n    return [];\n  }\n}\n\n/**\n * Get global memory statistics\n */\nexport async function getGlobalMemoryStats(): Promise<{\n  totalPatterns: number;\n  crossProjectPatterns: number;\n  trackedProjects: number;\n  totalOccurrences: number;\n  fixedPatterns: number;\n  patternsByAgent: Record<string, number>;\n  capacityInfo: {\n    current: number;\n    max: number;\n    percentFull: number;\n    isAtCap: boolean;\n  };\n  deduplicationStats: {\n    uniquePatterns: number;\n    averageOccurrences: number;\n  };\n}> {\n  const patterns = await loadGlobalPatterns();\n  const projects = await listTrackedProjects();\n  \n  const MAX_PATTERNS = 500;\n  \n  // Count patterns by agent type\n  const patternsByAgent: Record<string, number> = {};\n  for (const pattern of patterns) {\n    patternsByAgent[pattern.agent] = (patternsByAgent[pattern.agent] || 0) + 1;\n  }\n  \n  const totalOccurrences = patterns.reduce((sum, p) => sum + p.occurrences, 0);\n  const avgOccurrences = patterns.length > 0 ? totalOccurrences / patterns.length : 0;\n  \n  return {\n    totalPatterns: patterns.length,\n    crossProjectPatterns: patterns.filter(p => p.projects.length >= 2).length,\n    trackedProjects: projects.length,\n    totalOccurrences,\n    fixedPatterns: patterns.filter(p => p.fixApplied).length,\n    patternsByAgent,\n    capacityInfo: {\n      current: patterns.length,\n      max: MAX_PATTERNS,\n      percentFull: Math.round((patterns.length / MAX_PATTERNS) * 100),\n      isAtCap: patterns.length >= MAX_PATTERNS,\n    },\n    deduplicationStats: {\n      uniquePatterns: patterns.length,\n      averageOccurrences: Math.round(avgOccurrences * 10) / 10,\n    },\n  };\n}\n\n/**\n * Update GLOBAL_MEMORY.md with current patterns\n */\nexport async function updateGlobalMemoryMd(): Promise<void> {\n  const patterns = await loadGlobalPatterns();\n  const crossProject = patterns.filter(p => p.projects.length >= 2);\n  const projects = await listTrackedProjects();\n\n  const lines: string[] = [\n    '# Global Trie Memory',\n    '',\n    '> Auto-generated file tracking patterns across all your projects.',\n    `> Last updated: ${new Date().toISOString()}`,\n    '',\n    '## Summary',\n    '',\n    `- **Projects tracked:** ${projects.length}`,\n    `- **Total patterns:** ${patterns.length}`,\n    `- **Cross-project patterns:** ${crossProject.length}`,\n    '',\n    '## Cross-Project Patterns',\n    '',\n    'These issues appear in multiple projects:',\n    '',\n  ];\n  \n  for (const p of crossProject.slice(0, 20)) {\n    lines.push(\n      `### ${p.pattern.slice(0, 60)}${p.pattern.length > 60 ? '...' : ''}`,\n      '',\n      `- **Severity:** ${p.severity}`,\n      `- **Agent:** ${p.agent}`,\n      `- **Occurrences:** ${p.occurrences} across ${p.projects.length} projects`,\n      `- **Projects:** ${p.projects.slice(0, 5).join(', ')}${p.projects.length > 5 ? '...' : ''}`,\n    );\n    if (p.fixApplied) {\n      lines.push(`- **Fixed in:** ${p.fixApplied.project} on ${p.fixApplied.timestamp.split('T')[0]}`);\n    } else {\n      lines.push('- **Status:** Not fixed');\n    }\n    lines.push('');\n  }\n\n  lines.push(\n    '## Tracked Projects',\n    '',\n    '| Project | Last Scan | Issues |',\n    '|---------|-----------|--------|',\n  );\n  \n  for (const p of projects.slice(0, 20)) {\n    lines.push(`| ${p.name} | ${p.lastScan.split('T')[0]} | ${p.totalIssues} |`);\n  }\n\n  lines.push('', '---', '', '*This file is auto-generated by Trie. Do not edit manually.*');\n\n  await mkdir(GLOBAL_MEMORY_DIR, { recursive: true });\n  await writeFile(join(GLOBAL_MEMORY_DIR, 'GLOBAL_MEMORY.md'), lines.join('\\n'));\n}\n\n/**\n * Search global patterns\n */\nexport async function searchGlobalPatterns(\n  query: string,\n  options: {\n    limit?: number;\n    severity?: string[];\n    agent?: string;\n  } = {}\n): Promise<GlobalPattern[]> {\n  const patterns = await loadGlobalPatterns();\n  const limit = options.limit || 10;\n  const queryTerms = query.toLowerCase().split(/\\s+/).filter(t => t.length > 2);\n  \n  const scored = patterns\n    .filter(p => {\n      if (options.severity && !options.severity.includes(p.severity)) return false;\n      if (options.agent && p.agent !== options.agent) return false;\n      return true;\n    })\n    .map(p => {\n      const text = `${p.pattern} ${p.description} ${p.agent}`.toLowerCase();\n      let score = 0;\n      for (const term of queryTerms) {\n        if (text.includes(term)) score++;\n      }\n      return { pattern: p, score };\n    })\n    .filter(s => s.score > 0)\n    .sort((a, b) => b.score - a.score)\n    .slice(0, limit);\n  \n  return scored.map(s => s.pattern);\n}\n\n// Private helpers\n\n/**\n * Load global patterns with validation and auto-recovery\n */\nasync function loadGlobalPatterns(): Promise<GlobalPattern[]> {\n  const patternsPath = join(GLOBAL_MEMORY_DIR, 'global-patterns.json');\n  \n  try {\n    if (existsSync(patternsPath)) {\n      const content = await readFile(patternsPath, 'utf-8');\n      const result = safeParseAndValidate(content, GlobalPatternsIndexSchema);\n      \n      if (result.success) {\n        return result.data as GlobalPattern[];\n      }\n      \n      // Validation failed - attempt recovery\n      const backupManager = new BackupManager(patternsPath);\n      if (await backupManager.recoverFromBackup()) {\n        const recovered = await readFile(patternsPath, 'utf-8');\n        const recoveredResult = safeParseAndValidate(recovered, GlobalPatternsIndexSchema);\n        if (recoveredResult.success) {\n          return recoveredResult.data as GlobalPattern[];\n        }\n      }\n    }\n  } catch {\n    // File doesn't exist or recovery failed\n  }\n  \n  return [];\n}\n\n/**\n * Save global patterns with backup and atomic write\n */\nasync function saveGlobalPatterns(patterns: GlobalPattern[]): Promise<void> {\n  await mkdir(GLOBAL_MEMORY_DIR, { recursive: true });\n  const patternsPath = join(GLOBAL_MEMORY_DIR, 'global-patterns.json');\n  \n  // Intelligent deduplication: merge patterns with same ID\n  const patternMap = new Map<string, GlobalPattern>();\n  for (const pattern of patterns) {\n    const existing = patternMap.get(pattern.id);\n    if (existing) {\n      // Merge: update occurrences, projects, and timestamps\n      existing.occurrences += pattern.occurrences;\n      for (const proj of pattern.projects) {\n        if (!existing.projects.includes(proj)) {\n          existing.projects.push(proj);\n        }\n      }\n      existing.lastSeen = pattern.lastSeen > existing.lastSeen ? pattern.lastSeen : existing.lastSeen;\n    } else {\n      patternMap.set(pattern.id, pattern);\n    }\n  }\n  \n  const deduplicated = Array.from(patternMap.values());\n  \n  // Intelligent pruning: prioritize recent, high-severity, cross-project patterns\n  const pruned = intelligentPruneGlobalPatterns(deduplicated, 500);\n  \n  // Create backup before writing\n  const backupManager = new BackupManager(patternsPath);\n  await backupManager.createBackup();\n  \n  // Atomic write\n  await atomicWriteJSON(patternsPath, pruned);\n}\n\n/**\n * Intelligently prune global patterns to target count\n * Prioritizes: cross-project, high severity, recent, fixed patterns\n */\nfunction intelligentPruneGlobalPatterns(patterns: GlobalPattern[], targetCount: number): GlobalPattern[] {\n  if (patterns.length <= targetCount) {\n    return patterns;\n  }\n  \n  const severityWeight: Record<string, number> = {\n    critical: 100,\n    high: 50,\n    moderate: 20,\n    low: 10,\n    info: 5,\n  };\n  \n  const scored = patterns.map(pattern => {\n    const ageInDays = (Date.now() - new Date(pattern.lastSeen).getTime()) / (1000 * 60 * 60 * 24);\n    const recencyScore = Math.max(0, 100 - ageInDays * 2);\n    const severityScore = severityWeight[pattern.severity] || 10;\n    const crossProjectBonus = (pattern.projects.length - 1) * 30; // More projects = higher score\n    const fixedBonus = pattern.fixApplied ? 20 : 0;\n    const occurrenceScore = Math.min(pattern.occurrences * 2, 100);\n    \n    return {\n      pattern,\n      score: recencyScore + severityScore + crossProjectBonus + fixedBonus + occurrenceScore,\n    };\n  });\n  \n  return scored\n    .sort((a, b) => b.score - a.score)\n    .slice(0, targetCount)\n    .map(s => s.pattern);\n}\n\n/**\n * Extract a pattern ID using SHA256 for proper deduplication\n * \n * Normalizes the issue text to group similar patterns:\n * - Lowercases\n * - Replaces code snippets with 'CODE'\n * - Replaces numbers with 'N'\n * - Removes quotes\n * \n * Uses SHA256 truncated to 12 chars for collision-free IDs.\n */\nfunction extractPatternId(issue: Issue): string {\n  const normalized = issue.issue\n    .toLowerCase()\n    .replace(/`[^`]+`/g, 'CODE')\n    .replace(/\\b\\d+\\b/g, 'N')\n    .replace(/['\"]/g, '')\n    .slice(0, 100);\n  \n  const hash = createHash('sha256')\n    .update(normalized)\n    .digest('hex')\n    .slice(0, 12);\n  \n  return `${issue.agent}-${issue.severity}-${hash}`;\n}\n\nfunction sanitizeName(name: string): string {\n  return name.replace(/[^a-zA-Z0-9-_]/g, '-').toLowerCase();\n}\n","import { ContextGraph } from '../context/graph.js';\nimport { searchIssues } from '../memory/issue-store.js';\nimport { scanForVulnerabilities } from '../trie/vulnerability-signatures.js';\nimport { scanForVibeCodeIssues } from '../trie/vibe-code-signatures.js';\nimport type { LinearTicketNode, LinearTicketNodeData } from '../context/nodes.js';\nimport { tryGetClient } from '../ai/client.js';\nimport { getStorage } from '../storage/tiered-storage.js';\nimport fs from 'node:fs';\nimport path from 'node:path';\n\nexport interface GotchaPrediction {\n  id: string;\n  message: string;\n  confidence: number;\n  riskLevel: 'low' | 'medium' | 'high' | 'critical';\n  precedentId?: string;\n  recommendation: string;\n  evidence: {\n    pastIncidents: string[];\n    matchingPatterns: string[];\n    relatedTickets: string[];\n  };\n}\n\nexport class GotchaPredictor {\n  private readonly projectPath: string;\n  private readonly graph: ContextGraph;\n\n  constructor(projectPath: string, graph: ContextGraph) {\n    this.projectPath = projectPath;\n    this.graph = graph;\n  }\n\n  async predictGotchas(changedFiles: string[]): Promise<GotchaPrediction[]> {\n    const gotchas: GotchaPrediction[] = [];\n\n    // 1. Get active Linear tickets\n    const tickets = (await this.graph.listNodes()).filter(n => n.type === 'linear-ticket') as LinearTicketNode[];\n    \n    for (const file of changedFiles) {\n      const fileGotchas = await this.predictForFile(file, tickets);\n      gotchas.push(...fileGotchas);\n    }\n\n    return gotchas;\n  }\n\n  private async predictForFile(filePath: string, tickets: LinearTicketNode[]): Promise<GotchaPrediction[]> {\n    const gotchas: GotchaPrediction[] = [];\n    const fullPath = path.resolve(this.projectPath, filePath);\n\n    if (!fs.existsSync(fullPath)) return [];\n\n    const content = fs.readFileSync(fullPath, 'utf-8');\n\n    // 1. Run deterministic scanners for signatures\n    const vulnerabilities = await scanForVulnerabilities(content, filePath);\n    const vibeIssues = await scanForVibeCodeIssues(content, filePath);\n\n    const signatures = [\n      ...vulnerabilities.map(v => v.category),\n      ...vibeIssues.map(v => v.category)\n    ];\n\n    // === NEW: Query warm storage for relevant decisions and blockers ===\n    const storage = getStorage(this.projectPath);\n    await storage.initialize();\n\n    // Infer tags from file path and signatures\n    const tags = this.extractTagsFromFile(filePath, signatures);\n    \n    // Query relevant decisions for this file/area\n    const relevantDecisions = await storage.queryDecisions({\n      tags,\n      limit: 10,\n    });\n\n    // Query active blockers for this area\n    const activeBlockers = await storage.queryBlockers({\n      tags,\n      limit: 5,\n    });\n\n    // === NEW: Add gotchas from decision ledger ===\n    for (const decision of relevantDecisions) {\n      // Check if this file is in the decision's file list\n      if (decision.files.some(f => f.includes(filePath) || filePath.includes(f))) {\n        gotchas.push({\n          id: `gotcha-decision-${decision.id}`,\n          message: `Decision: ${decision.decision}`,\n          confidence: 0.85,\n          riskLevel: 'medium',\n          precedentId: decision.id,\n          recommendation: decision.reasoning || 'Review this decision before making changes',\n          evidence: {\n            pastIncidents: [],\n            matchingPatterns: decision.tags,\n            relatedTickets: []\n          }\n        });\n      }\n    }\n\n    // === NEW: Add gotchas from active blockers ===\n    for (const blocker of activeBlockers) {\n      gotchas.push({\n        id: `gotcha-blocker-${blocker.id}`,\n        message: `⚠️ Active Blocker: ${blocker.blocker}`,\n        confidence: 0.95,\n        riskLevel: blocker.impact === 'critical' ? 'critical' : \n                   blocker.impact === 'high' ? 'high' : 'medium',\n        recommendation: `This area is currently blocked. Consider resolving this before making changes.`,\n        evidence: {\n          pastIncidents: [],\n          matchingPatterns: blocker.tags,\n          relatedTickets: []\n        }\n      });\n    }\n\n    for (const ticket of tickets) {\n      const ticketData = ticket.data as LinearTicketNodeData;\n      \n      // Correlation 1: Ticket Intent vs Deterministic Signatures\n      const intentMatch = this.correlateIntentWithSignatures(ticketData, signatures);\n      if (intentMatch) {\n        gotchas.push(intentMatch);\n      }\n\n      // Correlation 2: Historical Precedents\n      const historicalPrecedents = await this.findHistoricalPrecedents(filePath, ticketData);\n      if (historicalPrecedents) {\n        gotchas.push(historicalPrecedents);\n      }\n    }\n\n    return gotchas;\n  }\n\n  /**\n   * Extract tags from file path and signatures for storage queries\n   */\n  private extractTagsFromFile(filePath: string, signatures: string[]): string[] {\n    const tags = new Set<string>();\n\n    // Add tags from file path\n    const normalized = filePath.toLowerCase();\n    if (normalized.includes('/auth/')) tags.add('auth');\n    if (normalized.includes('/payment/')) tags.add('payments');\n    if (normalized.includes('/api/')) tags.add('api');\n    if (normalized.includes('/frontend/') || normalized.includes('/ui/')) tags.add('ui');\n    if (normalized.includes('/backend/')) tags.add('backend');\n    if (normalized.includes('/database/') || normalized.includes('/models/')) tags.add('database');\n\n    // Add tags from signatures\n    signatures.forEach(sig => tags.add(sig.toLowerCase()));\n\n    return Array.from(tags);\n  }\n\n  private correlateIntentWithSignatures(ticket: LinearTicketNodeData, signatures: string[]): GotchaPrediction | null {\n    const relevantSignatures = signatures.filter(sig => \n      ticket.intentVibe.some(vibe => this.vibeToSignatureMap(vibe).includes(sig))\n    );\n\n    if (relevantSignatures.length > 0) {\n      return {\n        id: `gotcha-intent-${ticket.ticketId}-${Date.now()}`,\n        message: `[${ticket.ticketId}] Working on \"${ticket.title}\" (${ticket.intentVibe.join(', ')}) in a file with ${relevantSignatures.join(', ')} signatures.`,\n        confidence: 0.8,\n        riskLevel: 'high',\n        recommendation: `Be careful with ${relevantSignatures[0]} patterns as they correlate with the intent of your ticket.`,\n        evidence: {\n          pastIncidents: [],\n          matchingPatterns: relevantSignatures,\n          relatedTickets: [ticket.ticketId]\n        }\n      };\n    }\n\n    return null;\n  }\n\n  private async findHistoricalPrecedents(filePath: string, ticket: LinearTicketNodeData): Promise<GotchaPrediction | null> {\n    // Search for historical issues similar to this ticket's description\n    const similarIssues = await searchIssues(ticket.description, {\n      workDir: this.projectPath,\n      limit: 3\n    });\n\n    const relevantIssues = similarIssues.filter(r => r.issue.file === filePath || r.issue.file.includes(path.basename(filePath)));\n\n    const [firstMatch] = relevantIssues;\n    if (firstMatch) {\n      const issue = firstMatch.issue;\n      return {\n        id: `gotcha-precedent-${ticket.ticketId}-${Date.now()}`,\n        message: `A similar task in the past caused an issue: \"${issue.issue}\"`,\n        confidence: 0.9,\n        riskLevel: 'critical',\n        precedentId: issue.id,\n        recommendation: `Last time we worked on something similar here, we had to fix: \"${issue.fix}\". Check this first.`,\n        evidence: {\n          pastIncidents: [issue.id],\n          matchingPatterns: [],\n          relatedTickets: [ticket.ticketId]\n        }\n      };\n    }\n\n    return null;\n  }\n\n  private vibeToSignatureMap(vibe: string): string[] {\n    const map: Record<string, string[]> = {\n      'performance': ['giant-file', 'performance', 'react-antipattern'],\n      'security': ['injection', 'secrets', 'auth', 'xss', 'crypto'],\n      'auth': ['auth', 'secrets', 'config'],\n      'bug': ['no-error-handling', 'async', 'error-handling'],\n      'feature': ['mixing-concerns', 'hardcoded'],\n      'refactor': ['code-smell', 'giant-file', 'mixing-concerns']\n    };\n    return map[vibe] || [];\n  }\n\n  async synthesizeGotchaExplanation(gotcha: GotchaPrediction): Promise<string> {\n    const client = tryGetClient();\n    if (!client) return gotcha.message;\n\n    const prompt = `\n      You are a JIT Defect Predictor. You found a potential \"gotcha\" for a developer.\n      \n      Ticket context: ${gotcha.evidence.relatedTickets.join(', ')}\n      Signatures detected: ${gotcha.evidence.matchingPatterns.join(', ')}\n      Past incidents: ${gotcha.evidence.pastIncidents.join(', ')}\n      \n      Raw message: ${gotcha.message}\n      Recommendation: ${gotcha.recommendation}\n      \n      Explain this gotcha in a concise, human-friendly way (max 2 sentences). \n      Make it sound like a senior dev giving a helpful nudge.\n    `;\n\n    try {\n      const response = await client.messages.create({\n        model: 'claude-3-5-sonnet-20240620',\n        max_tokens: 100,\n        messages: [{ role: 'user', content: prompt }]\n      });\n\n      const text = response.content\n        .filter((block): block is { type: 'text'; text: string } => block.type === 'text')\n        .map(block => block.text)\n        .join('');\n      \n      return text.trim() || gotcha.message;\n    } catch {\n      return gotcha.message;\n    }\n  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-{"version":3,"sources":["../src/guardian/goal-validator.ts"],"sourcesContent":["/**\n * Goal Validator - Helpers for goal tracking\n * \n * Goal detection is handled entirely by the AI watcher in watch.ts.\n * The AI (Anthropic) checks every changed file against user-defined goals,\n * using the Trie's priority scoring for cost control.\n * \n * This module provides:\n * - getActiveGoals: loads active goals for the AI prompt\n * - recordGoalViolationCaught: tracks when a violation is detected\n * - recordGoalViolationFixed: tracks when a violation is auto-fixed\n * - measureInitialGoalValue: measures current state for new goals\n */\n\nimport type { Goal } from './guardian-state.js';\nimport { getProjectState } from './guardian-state.js';\nimport { searchIssues } from '../memory/issue-store.js';\n\n/**\n * Get active goals for a project (used by the AI watcher)\n */\nexport async function getActiveGoals(projectPath: string): Promise<Goal[]> {\n  const projectState = getProjectState(projectPath);\n  await projectState.load();\n  return projectState.getAllGoals().filter(g => g.status === 'active');\n}\n\nexport async function recordGoalViolationCaught(\n  goal: Goal,\n  file: string,\n  projectPath: string\n): Promise<void> {\n  const projectState = getProjectState(projectPath);\n  await projectState.load();\n  \n  const metadata = goal.metadata || {};\n  const caughtCount = (metadata.caughtCount || 0) + 1;\n  \n  await projectState.updateGoal(goal.id, {\n    metadata: {\n      ...metadata,\n      caughtCount,\n      lastCaught: new Date().toISOString(),\n      lastCaughtFile: file,\n    },\n  });\n}\n\nexport async function recordGoalViolationFixed(\n  goal: Goal,\n  file: string,\n  projectPath: string\n): Promise<void> {\n  const projectState = getProjectState(projectPath);\n  await projectState.load();\n  \n  const metadata = goal.metadata || {};\n  const fixedCount = (metadata.fixedCount || 0) + 1;\n  \n  await projectState.updateGoal(goal.id, {\n    metadata: {\n      ...metadata,\n      fixedCount,\n      lastFixed: new Date().toISOString(),\n      lastFixedFile: file,\n    },\n  });\n  \n  // Resolve the goal-violation issue in the issue store\n  // This is the source of truth - measureGoalMetric() will query from here\n  const { resolveGoalViolation } = await import('../memory/issue-store.js');\n  await resolveGoalViolation(file, goal.description, projectPath);\n  \n  // Trigger immediate progress update so UI reflects the fix\n  const { getGoalManager } = await import('./goal-manager.js');\n  const goalManager = getGoalManager(projectPath);\n  await goalManager.updateGoalProgress();\n}\n\n/**\n * Measure the initial value for a new goal based on existing issues.\n * This sets a proper baseline so progress calculation works correctly.\n * \n * For reduction goals (like \"no emojis\"), we count current violations.\n * For other goals, we use semantic matching against existing issues.\n * \n * Returns the count to use as both startValue and currentValue.\n */\nexport async function measureInitialGoalValue(\n  description: string,\n  projectPath: string\n): Promise<number> {\n  try {\n    const issues = await searchIssues('', {\n      workDir: projectPath,\n      limit: 1000,\n      includeResolved: false,\n    });\n    \n    if (issues.length === 0) {\n      return 0;\n    }\n    \n    const desc = description.toLowerCase();\n    \n    // Check for goal-violation issues that might already exist for similar goals\n    const goalViolations = issues.filter(r => \n      r.issue.agent === 'goal-violation' &&\n      r.issue.issue.toLowerCase().includes(desc.slice(0, 30))\n    );\n    if (goalViolations.length > 0) {\n      return goalViolations.length;\n    }\n    \n    // Security goals\n    if (desc.includes('security') || desc.includes('vulnerab')) {\n      return issues.filter(r => \n        r.issue.agent === 'security' || r.issue.severity === 'critical'\n      ).length;\n    }\n    \n    // Type safety goals\n    if (desc.includes('type') || desc.includes('typescript') || desc.includes('any type')) {\n      return issues.filter(r => \n        r.issue.agent === 'typecheck' ||\n        r.issue.issue.toLowerCase().includes('type')\n      ).length;\n    }\n    \n    // Bug-related goals\n    if (desc.includes('bug') || desc.includes('error')) {\n      return issues.filter(r => \n        r.issue.agent === 'bug-finding' ||\n        r.issue.severity === 'critical' ||\n        r.issue.severity === 'serious'\n      ).length;\n    }\n    \n    // Dead code / unused code goals\n    if (desc.includes('dead code') || desc.includes('unused')) {\n      return issues.filter(r => {\n        const msg = r.issue.issue.toLowerCase();\n        return msg.includes('unused') || msg.includes('dead code') || msg.includes('never used');\n      }).length;\n    }\n    \n    // For custom goals like \"no emojis\", we start at 0 and let the AI scanner find violations\n    // This is correct because we don't know the count until a scan runs\n    return 0;\n  } catch {\n    return 0;\n  }\n}\n\n/**\n * Manually check files against goals\n * Returns violations found\n * \n * NOW WITH CACHING: Uses CodebaseIndex to avoid re-scanning unchanged files\n */\nexport async function checkFilesForGoalViolations(\n  goals: Goal[],\n  projectPath: string,\n  filesToCheck?: string[],\n  onProgress?: (message: string) => void\n): Promise<Array<{ file: string; message: string; severity: 'critical' | 'warning' | 'info' }>> {\n  // Import AI client and codebase index\n  const { isAIAvailable, runAIAnalysis } = await import('../ai/client.js');\n  const { CodebaseIndex } = await import('../context/codebase-index.js');\n  \n  if (!isAIAvailable()) {\n    throw new Error('AI not available - ANTHROPIC_API_KEY not set');\n  }\n  \n  // Initialize codebase index for caching\n  const codebaseIndex = new CodebaseIndex(projectPath);\n  \n  // Check if index needs to be built\n  if (codebaseIndex.isEmpty()) {\n    onProgress?.('Building codebase index (first-time, may take a minute)...');\n    console.error('[Goal Check] Codebase index is empty - building index first...');\n    console.error('[Goal Check] This is a one-time operation. Future checks will be much faster.');\n    \n    // Auto-index the codebase\n    const { glob } = await import('glob');\n    const indexPattern = `${projectPath}/**/*.{ts,tsx,js,jsx,mjs,vue,svelte,astro,py,go,rs,java,c,cpp,h,hpp,cs,rb,php,css,scss,html}`;\n    const indexFiles = await glob(indexPattern, {\n      ignore: ['**/node_modules/**', '**/dist/**', '**/build/**', '**/.git/**', '**/.trie/**', '**/coverage/**'],\n      nodir: true,\n    });\n    \n    let indexed = 0;\n    const total = Math.min(indexFiles.length, 500); // Cap at 500 files for initial index\n    for (const filePath of indexFiles.slice(0, 500)) {\n      let relativePath = filePath;\n      if (filePath.toLowerCase().startsWith(projectPath.toLowerCase() + '/')) {\n        relativePath = filePath.slice(projectPath.length + 1);\n      }\n      const result = await codebaseIndex.indexFile(relativePath);\n      if (result) indexed++;\n      \n      // Progress indicator every 50 files\n      if (indexed % 50 === 0) {\n        onProgress?.(`Indexing files (${indexed}/${total})...`);\n        console.error(`[Goal Check] Indexed ${indexed}/${total} files...`);\n      }\n    }\n    \n    await codebaseIndex.save();\n    console.error(`[Goal Check] Index built: ${indexed} files indexed`);\n  }\n  \n  // Get files to check\n  let files: string[] = [];\n  if (filesToCheck && filesToCheck.length > 0) {\n    files = filesToCheck;\n  } else {\n    // MANUAL CHECK MODE: Scan ALL relevant files, not just recently modified\n    const { glob } = await import('glob');\n    \n    const pattern = `${projectPath}/**/*.{ts,tsx,js,jsx,py,go,rs,java,c,cpp,h,hpp,cs,rb,php,css,scss,html,vue,svelte}`;\n    const allFiles = await glob(pattern, {\n      ignore: ['**/node_modules/**', '**/dist/**', '**/build/**', '**/.git/**', '**/.trie/**', '**/coverage/**'],\n      nodir: true,\n    });\n    \n    // For manual checks, use more files but still reasonable limit\n    // Sort by modification time to prioritize recently modified\n    const { stat } = await import('fs/promises');\n    const withStats = await Promise.all(\n      allFiles.map(async (f) => {\n        try {\n          const stats = await stat(f);\n          return { file: f, mtime: stats.mtime.getTime() };\n        } catch {\n          return null;\n        }\n      })\n    );\n    \n    files = withStats\n      .filter((f): f is { file: string; mtime: number } => f !== null)\n      .sort((a, b) => b.mtime - a.mtime)\n      .slice(0, 100) // Check up to 100 files for manual scans\n      .map(f => f.file);\n  }\n  \n  if (files.length === 0) {\n    throw new Error('No files found to check');\n  }\n  \n  // Check which files need scanning vs can use cached results\n  const filesToScan: string[] = [];\n  const cachedViolations: Array<{ file: string; message: string; severity: 'critical' | 'warning' | 'info' }> = [];\n  \n  for (const filePath of files) {\n    // Handle case-insensitive filesystems (macOS) and ensure we get a proper relative path\n    let relativePath = filePath;\n    if (filePath.toLowerCase().startsWith(projectPath.toLowerCase() + '/')) {\n      relativePath = filePath.slice(projectPath.length + 1);\n    } else if (filePath.startsWith('/')) {\n      // Already absolute but doesn't match projectPath - skip this file\n      // This can happen with stale cache entries from different projects\n      continue;\n    }\n    const hasChanged = await codebaseIndex.hasChanged(relativePath);\n    \n    if (hasChanged) {\n      // File changed or not indexed - needs scanning\n      // Try to index the file first; skip if it doesn't exist\n      const indexed = await codebaseIndex.indexFile(relativePath);\n      if (indexed) {\n        filesToScan.push(filePath);\n      }\n      // If indexFile returns null, file doesn't exist - skip it silently\n    } else {\n      // File unchanged - check cache for each goal\n      for (const goal of goals) {\n        const cached = codebaseIndex.getCachedViolations(relativePath, goal.id);\n        if (cached && cached.length > 0) {\n          const violation = cached[0];\n          if (violation && violation.found) {\n            cachedViolations.push({\n              file: relativePath,\n              message: `Goal \"${goal.description}\" violated in ${relativePath}: ${violation.details || 'Violation found'} [${violation.confidence || 90}% confidence] (cached)`,\n              severity: 'warning',\n            });\n          }\n        } else {\n          // No cache for this goal - needs scanning\n          if (!filesToScan.includes(filePath)) {\n            filesToScan.push(filePath);\n          }\n        }\n      }\n    }\n  }\n  \n  onProgress?.(`Checking ${filesToScan.length} files for violations...`);\n  console.error(`[Goal Check] ${files.length} files total, ${filesToScan.length} need scanning, ${files.length - filesToScan.length} using cache`);\n  \n  // Process files that need scanning in batches\n  const allViolations: Array<{ file: string; message: string; severity: 'critical' | 'warning' | 'info' }> = [...cachedViolations];\n  \n  if (filesToScan.length === 0) {\n    // All results from cache!\n    await codebaseIndex.save();\n    return allViolations;\n  }\n  \n  // For large file sets, process in batches to avoid token limits\n  const BATCH_SIZE = 25; // Process 25 files at a time\n  \n  const totalBatches = Math.ceil(filesToScan.length / BATCH_SIZE);\n  for (let batchStart = 0; batchStart < filesToScan.length; batchStart += BATCH_SIZE) {\n    const batchNum = Math.floor(batchStart / BATCH_SIZE) + 1;\n    onProgress?.(`Analyzing files (batch ${batchNum}/${totalBatches})...`);\n    const batchFiles = filesToScan.slice(batchStart, batchStart + BATCH_SIZE);\n    \n    // Read file contents for this batch\n    const { readFile } = await import('fs/promises');\n    const fileContents = await Promise.all(\n      batchFiles.map(async (filePath) => {\n        try {\n          const content = await readFile(filePath, 'utf-8');\n          const relativePath = filePath.replace(projectPath + '/', '');\n          return {\n            path: relativePath,\n            content: content.slice(0, 10000), // Increased limit for manual checks\n          };\n        } catch {\n          return null;\n        }\n      })\n    );\n    \n    const validFiles = fileContents.filter((f): f is { path: string; content: string } => f !== null);\n    \n    if (validFiles.length === 0) continue;\n    \n    // Build files block for AI\n    const filesBlock = validFiles\n      .map(f => `--- ${f.path} ---\\n${f.content}`)\n      .join('\\n\\n');\n    \n    // Build goals section\n    const goalsSection = `\nUSER-DEFINED GOALS (check EVERY file against ALL goals):\n${goals.map((g, i) => `  ${i + 1}. \"${g.description}\"`).join('\\n')}\n\nThis is a MANUAL CHECK requested by the user. Report ALL goal violations you find.\nFor emoji detection, look for Unicode emoji characters.\n`;\n  \n    // Run AI analysis\n    const result = await runAIAnalysis({\n      systemPrompt: `You are checking code for GOAL VIOLATIONS ONLY.\n${goalsSection}\nReply ONLY with a JSON array. Each element must have:\n- \"file\": relative file path\n- \"severity\": \"critical\" | \"major\" | \"minor\"\n- \"description\": 1-sentence description of the goal violation with specific examples\n- \"confidence\": number 0-100, how confident you are this is a violation\n- \"isGoalViolation\": true (always true for this scan)\n- \"goalIndex\": 0-based index of the violated goal\n\nCRITICAL DETECTION RULES:\n\n**EMOJIS**: Any Unicode emoji characters including but not limited to:\n- Emoticons: 😀😃😄😊🙂🙃😉😇🥰😍🤩😘😗☺️😚😙🥲\n- Symbols: ⚡️⚠️✅❌➜→←↑↓►◄▲▼★☆●○◆◇■□▪️▫️\n- Objects: 📊📈📉💻🖥️📱⌨️🖱️💾💿📀🔧🔨⚙️🛠️\n- Actions: 🔥💪👍👎👏🙌🤝✊👊🎯🎉🎊🚀\n- Weather: ☀️🌤️⛅☁️🌦️🌧️⛈️🌩️🌨️❄️\n- ALL OTHER Unicode emoji in ranges U+1F300-U+1F9FF, U+2600-U+27BF, U+2B00-U+2BFF\n\n**COLORS**: For \"purple\" or \"gradient\" goals, check:\n- CSS: purple, #purple, hsl(purple), rgb(purple), violet, #8B00FF, #9B59D6, etc.\n- Gradients: linear-gradient, radial-gradient, conic-gradient, background-image with gradients\n- Tailwind: purple-*, violet-*, bg-gradient-*\n- Styled components or CSS-in-JS with purple/violet/gradient\n\nBe EXTREMELY thorough. Check:\n1. String literals and template literals\n2. JSX/HTML content\n3. CSS files and style blocks\n4. Comments (emojis in comments still violate \"no emojis\")\n5. console.log statements\n6. Component names, variable names (if they contain emojis)\n\nIf a goal says \"no emojis\" and you see ANY emoji ANYWHERE in the file, report it.\nIf a goal says \"no console.log\" and you see console.log ANYWHERE, report it.\nIf a goal says \"no purple/gradient\" and you see ANY purple color or gradient, report it.\n\nIf no violations found, reply with: []\nOutput ONLY the JSON array, no markdown fences, no commentary.`,\n      userPrompt: `Check these ${validFiles.length} files for goal violations:\\n\\n${filesBlock}`,\n      maxTokens: 8192, // Increased for larger codebases\n      temperature: 0.1,\n    });\n    \n    // Parse response\n    let issues: Array<{\n      file: string;\n      severity: 'critical' | 'major' | 'minor';\n      description: string;\n      confidence: number;\n      isGoalViolation: boolean;\n      goalIndex?: number;\n    }> = [];\n    \n    try {\n      const cleaned = result.content.replace(/```json?\\n?|\\n?```/g, '').trim();\n      issues = JSON.parse(cleaned);\n      if (!Array.isArray(issues)) issues = [];\n    } catch (err) {\n      // Parse failed - continue to next batch\n      console.debug('[Goal Check] Batch parse failed:', err);\n      continue;\n    }\n    \n    // Convert to violation format and record\n    for (const issue of issues) {\n      if (!issue.isGoalViolation || issue.confidence < 50) continue;\n      if (issue.goalIndex == null || issue.goalIndex < 0 || issue.goalIndex >= goals.length) continue;\n      \n      const goal = goals[issue.goalIndex];\n      if (!goal) continue; // Defensive check\n      const severity = issue.severity === 'critical' ? 'critical' : 'warning';\n      const message = `Goal \"${goal.description}\" violated in ${issue.file}: ${issue.description} [${issue.confidence}% confidence]`;\n      \n      allViolations.push({\n        file: issue.file,\n        message,\n        severity,\n      });\n      \n      // Cache the result in codebase index\n      codebaseIndex.recordViolation(\n        issue.file,\n        goal.id,\n        goal.description,\n        true, // found\n        issue.description,\n        issue.confidence\n      );\n      \n      // Record violation\n      await recordGoalViolationCaught(goal, issue.file, projectPath);\n    }\n    \n    // Also record \"no violation\" for scanned files\n    for (const file of validFiles) {\n      for (let goalIdx = 0; goalIdx < goals.length; goalIdx++) {\n        const goal = goals[goalIdx];\n        if (!goal) continue;\n        const hasViolation = issues.some(i => i.file === file.path && i.goalIndex === goalIdx);\n        if (!hasViolation) {\n          codebaseIndex.recordViolation(\n            file.path,\n            goal.id,\n            goal.description,\n            false, // not found\n            undefined,\n            100\n          );\n        }\n      }\n    }\n  }\n  \n  // Save updated index\n  await codebaseIndex.save();\n  \n  return 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