@triedotdev/mcp 1.0.136 → 1.0.138

package/README.md

@@ -18,7 +18,7 @@ The agent learns from every incident, decision, and fix. When you ship, Trie rem
 
 ## Goal
 
-**Trie is your personal AI agent that maintains multiple codebases without losing context.**
+**Trie is your personal AI agent that carries context across tools.**
 
 Every bug you fix teaches the agent a pattern that protects all your projects. Every incident you report becomes institutional knowledge that travels with your code. Every decision you make—and the tradeoffs you considered—gets extracted and stored automatically by the agent.
 
@@ -108,12 +108,12 @@ Trie remembers your decisions across tools, tracks the tradeoffs you've made, an
 
 ## How It Works
 
-### The Guardian System
+### The Trie Agent
 
-Trie uses a "Guardian Agent" architecture:
+Trie uses a proactive agent architecture:
 
 - Analyzes your code for potential issues based on your incident history.
-- Guardian decides what matters based on your history.
+- The agent decides what matters based on your history.
 - Memory Tree stores incident patterns using a trie data structure for fast lookups.
 - Learning Loop improves predictions based on your feedback.
 
@@ -312,7 +312,7 @@ trie watch
 # Reattach with: tmux attach -t trie-watch
 ```
 
-This allows you to keep the guardian running while using other terminals. The interactive dashboard will be available when you reattach.
+This allows you to keep the agent running while using other terminals. The interactive dashboard will be available when you reattach.
 
 ### JIT Defect Prediction ("Gotchas")
 
@@ -635,7 +635,7 @@ What happens at the 10,000 issue cap: Trie will deduplicate new repeats, compact
 
 **Hooks not working**: Reinstall with `trie init`. Make sure you have write permissions to .git/hooks/.
 
-**Goals showing but not detecting violations**: This happens when goals appear in the UI but aren't active in guardian state. The Goals view will show a yellow warning box. To fix:
+**Goals showing but not detecting violations**: This happens when goals appear in the UI but aren't active in project state. The Goals view will show a yellow warning box. To fix:
 ```bash
 # Quick fix - activate a specific goal
 node fix-goals.js "NO EMOJIS"

package/dist/{autonomy-config-QA6ATWLJ.js → autonomy-config-TZ6HF4FA.js}

@@ -10,8 +10,8 @@ import {
   shouldAutoFix,
   shouldBlockPush,
   trackIssueOccurrence
-} from "./chunk-ZEXMMTIQ.js";
-import "./chunk-45Y5TLQZ.js";
+} from "./chunk-J5EMP4XW.js";
+import "./chunk-SH7H3WRU.js";
 import "./chunk-APMV77PU.js";
 import "./chunk-DGUM43GV.js";
 export {
@@ -27,4 +27,4 @@ export {
   shouldBlockPush,
   trackIssueOccurrence
 };
-//# sourceMappingURL=autonomy-config-QA6ATWLJ.js.map
+//# sourceMappingURL=autonomy-config-TZ6HF4FA.js.map

package/dist/{chat-store-HFOOWZYN.js → chat-store-OJLJCJFI.js}

@@ -2,9 +2,9 @@ import {
   ChatStore,
   clearChatStores,
   getChatStore
-} from "./chunk-DFPVUMVE.js";
+} from "./chunk-23RJT5WT.js";
 import "./chunk-43X6JBEM.js";
-import "./chunk-45Y5TLQZ.js";
+import "./chunk-SH7H3WRU.js";
 import "./chunk-APMV77PU.js";
 import "./chunk-DGUM43GV.js";
 export {
@@ -12,4 +12,4 @@ export {
   clearChatStores,
   getChatStore
 };
-//# sourceMappingURL=chat-store-HFOOWZYN.js.map
+//# sourceMappingURL=chat-store-OJLJCJFI.js.map

package/dist/{chunk-DFPVUMVE.js → chunk-23RJT5WT.js}

@@ -3,7 +3,7 @@ import {
 } from "./chunk-43X6JBEM.js";
 import {
   getTrieDirectory
-} from "./chunk-45Y5TLQZ.js";
+} from "./chunk-SH7H3WRU.js";
 
 // src/cli/dashboard/chat-store.ts
 import { mkdir, readFile, unlink } from "fs/promises";
@@ -20,11 +20,12 @@ var ChatMessageSchema = z.object({
     input: z.record(z.any())
   })).optional(),
   pendingFix: z.object({
-    id: z.string(),
+    id: z.string().optional(),
     file: z.string(),
     goal: z.string(),
     violation: z.string(),
-    suggestedFix: z.string().optional()
+    suggestedFix: z.string().optional(),
+    directory: z.string().optional()
   }).optional()
 });
 var ChatSessionSchema = z.object({
@@ -344,4 +345,4 @@ export {
   getChatStore,
   clearChatStores
 };
-//# sourceMappingURL=chunk-DFPVUMVE.js.map
+//# sourceMappingURL=chunk-23RJT5WT.js.map

package/dist/chunk-23RJT5WT.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/cli/dashboard/chat-store.ts"],"sourcesContent":["/**\n * Chat Store - Persistent storage for chat history\n * \n * Features:\n * - Save and load chat sessions\n * - List all chat sessions\n * - Archive management (rename, delete, export)\n * - Atomic writes with backup rotation\n * - Zod validation for data integrity\n * \n * Persists to: .trie/memory/chats/\n */\n\nimport { mkdir, readFile, unlink } from 'fs/promises';\nimport { existsSync } from 'fs';\nimport { join } from 'path';\nimport { getTrieDirectory } from '../../utils/workspace.js';\nimport { z } from 'zod';\nimport { atomicWriteJSON } from '../../utils/atomic-write.js';\nimport type { ChatMessage } from './types.js';\n\n// ============================================================================\n// Schemas\n// ============================================================================\n\nconst ChatMessageSchema = z.object({\n  role: z.enum(['user', 'assistant']),\n  content: z.string(),\n  timestamp: z.number(),\n  toolCalls: z.array(z.object({\n    id: z.string(),\n    name: z.string(),\n    input: z.record(z.any()),\n  })).optional(),\n  pendingFix: z.object({\n    id: z.string().optional(),\n    file: z.string(),\n    goal: z.string(),\n    violation: z.string(),\n    suggestedFix: z.string().optional(),\n    directory: z.string().optional(),\n  }).optional(),\n});\n\nconst ChatSessionSchema = z.object({\n  id: z.string(),\n  title: z.string(),\n  messages: z.array(ChatMessageSchema),\n  createdAt: z.number(),\n  updatedAt: z.number(),\n  archived: z.boolean(),\n});\n\nexport type ChatSession = z.infer<typeof ChatSessionSchema>;\n\nconst ChatStoreIndexSchema = z.object({\n  version: z.literal(1),\n  sessions: z.array(z.object({\n    id: z.string(),\n    title: z.string(),\n    createdAt: z.number(),\n    updatedAt: z.number(),\n    archived: z.boolean(),\n    messageCount: z.number(),\n  })),\n  lastUpdated: z.string(),\n});\n\ntype ChatStoreIndex = z.infer<typeof ChatStoreIndexSchema>;\n\n// ============================================================================\n// ChatStore Class\n// ============================================================================\n\nexport class ChatStore {\n  private projectPath: string;\n  private index: ChatStoreIndex | null = null;\n  \n  constructor(projectPath: string) {\n    this.projectPath = projectPath;\n  }\n  \n  /**\n   * Get the chats directory path\n   */\n  private getChatsDir(): string {\n    return join(getTrieDirectory(this.projectPath), 'memory', 'chats');\n  }\n  \n  /**\n   * Get the index file path\n   */\n  private getIndexPath(): string {\n    return join(this.getChatsDir(), 'index.json');\n  }\n  \n  /**\n   * Get the path for a specific session file\n   */\n  private getSessionPath(sessionId: string): string {\n    return join(this.getChatsDir(), `${sessionId}.json`);\n  }\n  \n  /**\n   * Load the index file\n   */\n  private async loadIndex(): Promise<ChatStoreIndex> {\n    if (this.index) {\n      return this.index;\n    }\n    \n    const indexPath = this.getIndexPath();\n    \n    if (existsSync(indexPath)) {\n      try {\n        const content = await readFile(indexPath, 'utf-8');\n        const parsed = JSON.parse(content);\n        const result = ChatStoreIndexSchema.safeParse(parsed);\n        \n        if (result.success) {\n          this.index = result.data;\n          return this.index;\n        }\n      } catch (error) {\n        console.error('Failed to load chat index:', error);\n      }\n    }\n    \n    // Create empty index\n    this.index = {\n      version: 1,\n      sessions: [],\n      lastUpdated: new Date().toISOString(),\n    };\n    \n    return this.index;\n  }\n  \n  /**\n   * Save the index file\n   */\n  private async saveIndex(): Promise<void> {\n    if (!this.index) return;\n    \n    const indexPath = this.getIndexPath();\n    const chatsDir = this.getChatsDir();\n    \n    // Ensure directory exists\n    await mkdir(chatsDir, { recursive: true });\n    \n    // Update timestamp\n    this.index.lastUpdated = new Date().toISOString();\n    \n    // Atomic write\n    await atomicWriteJSON(indexPath, this.index);\n  }\n  \n  /**\n   * Generate a unique session ID\n   */\n  private generateSessionId(): string {\n    return `chat-${Date.now()}-${Math.random().toString(36).slice(2, 9)}`;\n  }\n  \n  /**\n   * Generate a default title from the first user message\n   */\n  private generateTitle(messages: ChatMessage[]): string {\n    const firstUser = messages.find(m => m.role === 'user');\n    if (firstUser) {\n      const text = firstUser.content.trim();\n      const maxLen = 50;\n      if (text.length > maxLen) {\n        return text.slice(0, maxLen) + '...';\n      }\n      return text;\n    }\n    return 'New Chat';\n  }\n  \n  /**\n   * Save a chat session\n   */\n  async saveSession(messages: ChatMessage[], sessionId?: string, title?: string): Promise<string> {\n    await this.loadIndex();\n    \n    const id = sessionId || this.generateSessionId();\n    const now = Date.now();\n    \n    // Load existing session if updating\n    let createdAt = now;\n    if (sessionId) {\n      const existing = this.index!.sessions.find(s => s.id === sessionId);\n      if (existing) {\n        createdAt = existing.createdAt;\n      }\n    }\n    \n    const session: ChatSession = {\n      id,\n      title: title || this.generateTitle(messages),\n      messages,\n      createdAt,\n      updatedAt: now,\n      archived: false,\n    };\n    \n    // Validate\n    const result = ChatSessionSchema.safeParse(session);\n    if (!result.success) {\n      throw new Error(`Invalid chat session: ${result.error.message}`);\n    }\n    \n    // Save session file\n    const sessionPath = this.getSessionPath(id);\n    await mkdir(this.getChatsDir(), { recursive: true });\n    await atomicWriteJSON(sessionPath, session);\n    \n    // Update index\n    const existingIndex = this.index!.sessions.findIndex(s => s.id === id);\n    const indexEntry = {\n      id,\n      title: session.title,\n      createdAt: session.createdAt,\n      updatedAt: session.updatedAt,\n      archived: session.archived,\n      messageCount: messages.length,\n    };\n    \n    if (existingIndex >= 0) {\n      this.index!.sessions[existingIndex] = indexEntry;\n    } else {\n      this.index!.sessions.unshift(indexEntry);\n    }\n    \n    await this.saveIndex();\n    \n    return id;\n  }\n  \n  /**\n   * Load a chat session\n   */\n  async loadSession(sessionId: string): Promise<ChatSession | null> {\n    const sessionPath = this.getSessionPath(sessionId);\n    \n    if (!existsSync(sessionPath)) {\n      return null;\n    }\n    \n    try {\n      const content = await readFile(sessionPath, 'utf-8');\n      const parsed = JSON.parse(content);\n      const result = ChatSessionSchema.safeParse(parsed);\n      \n      if (result.success) {\n        return result.data;\n      }\n      \n      console.error('Invalid chat session:', result.error.message);\n      return null;\n    } catch (error) {\n      console.error('Failed to load chat session:', error);\n      return null;\n    }\n  }\n  \n  /**\n   * List all chat sessions\n   */\n  async listSessions(includeArchived: boolean = false): Promise<ChatStoreIndex['sessions']> {\n    await this.loadIndex();\n    \n    let sessions = this.index!.sessions;\n    \n    if (!includeArchived) {\n      sessions = sessions.filter(s => !s.archived);\n    }\n    \n    // Sort by most recent first\n    return sessions.sort((a, b) => b.updatedAt - a.updatedAt);\n  }\n  \n  /**\n   * Delete a chat session\n   */\n  async deleteSession(sessionId: string): Promise<boolean> {\n    await this.loadIndex();\n    \n    const sessionPath = this.getSessionPath(sessionId);\n    \n    if (!existsSync(sessionPath)) {\n      return false;\n    }\n    \n    try {\n      await unlink(sessionPath);\n      \n      // Remove from index\n      this.index!.sessions = this.index!.sessions.filter(s => s.id !== sessionId);\n      await this.saveIndex();\n      \n      return true;\n    } catch (error) {\n      console.error('Failed to delete chat session:', error);\n      return false;\n    }\n  }\n  \n  /**\n   * Rename a chat session\n   */\n  async renameSession(sessionId: string, newTitle: string): Promise<boolean> {\n    await this.loadIndex();\n    \n    const session = await this.loadSession(sessionId);\n    if (!session) {\n      return false;\n    }\n    \n    session.title = newTitle;\n    session.updatedAt = Date.now();\n    \n    // Save updated session\n    const sessionPath = this.getSessionPath(sessionId);\n    await atomicWriteJSON(sessionPath, session);\n    \n    // Update index\n    const indexEntry = this.index!.sessions.find(s => s.id === sessionId);\n    if (indexEntry) {\n      indexEntry.title = newTitle;\n      indexEntry.updatedAt = session.updatedAt;\n      await this.saveIndex();\n    }\n    \n    return true;\n  }\n  \n  /**\n   * Archive a chat session\n   */\n  async archiveSession(sessionId: string): Promise<boolean> {\n    await this.loadIndex();\n    \n    const session = await this.loadSession(sessionId);\n    if (!session) {\n      return false;\n    }\n    \n    session.archived = true;\n    session.updatedAt = Date.now();\n    \n    // Save updated session\n    const sessionPath = this.getSessionPath(sessionId);\n    await atomicWriteJSON(sessionPath, session);\n    \n    // Update index\n    const indexEntry = this.index!.sessions.find(s => s.id === sessionId);\n    if (indexEntry) {\n      indexEntry.archived = true;\n      indexEntry.updatedAt = session.updatedAt;\n      await this.saveIndex();\n    }\n    \n    return true;\n  }\n  \n  /**\n   * Unarchive a chat session\n   */\n  async unarchiveSession(sessionId: string): Promise<boolean> {\n    await this.loadIndex();\n    \n    const session = await this.loadSession(sessionId);\n    if (!session) {\n      return false;\n    }\n    \n    session.archived = false;\n    session.updatedAt = Date.now();\n    \n    // Save updated session\n    const sessionPath = this.getSessionPath(sessionId);\n    await atomicWriteJSON(sessionPath, session);\n    \n    // Update index\n    const indexEntry = this.index!.sessions.find(s => s.id === sessionId);\n    if (indexEntry) {\n      indexEntry.archived = false;\n      indexEntry.updatedAt = session.updatedAt;\n      await this.saveIndex();\n    }\n    \n    return true;\n  }\n  \n  /**\n   * Export a chat session as JSON\n   */\n  async exportSession(sessionId: string): Promise<string | null> {\n    const session = await this.loadSession(sessionId);\n    if (!session) {\n      return null;\n    }\n    \n    return JSON.stringify(session, null, 2);\n  }\n  \n  /**\n   * Get statistics about chat sessions\n   */\n  async getStats(): Promise<{\n    total: number;\n    active: number;\n    archived: number;\n    totalMessages: number;\n  }> {\n    await this.loadIndex();\n    \n    const total = this.index!.sessions.length;\n    const archived = this.index!.sessions.filter(s => s.archived).length;\n    const active = total - archived;\n    const totalMessages = this.index!.sessions.reduce((sum, s) => sum + s.messageCount, 0);\n    \n    return { total, active, archived, totalMessages };\n  }\n  \n  /**\n   * Prune old sessions (older than N days)\n   */\n  async pruneOldSessions(daysToKeep: number = 90): Promise<number> {\n    await this.loadIndex();\n    \n    const cutoff = Date.now() - (daysToKeep * 24 * 60 * 60 * 1000);\n    const toDelete = this.index!.sessions.filter(s => s.updatedAt < cutoff);\n    \n    for (const session of toDelete) {\n      await this.deleteSession(session.id);\n    }\n    \n    return toDelete.length;\n  }\n}\n\n// ============================================================================\n// Singleton Management\n// ============================================================================\n\nconst chatStores: Map<string, ChatStore> = new Map();\n\n/**\n * Get the ChatStore for a project (singleton per project)\n */\nexport function getChatStore(projectPath: string): ChatStore {\n  let store = chatStores.get(projectPath);\n  if (!store) {\n    store = new ChatStore(projectPath);\n    chatStores.set(projectPath, store);\n  }\n  return store;\n}\n\n/**\n * Clear all ChatStore instances (for testing)\n */\nexport function clearChatStores(): void {\n  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package/dist/{chunk-4YJ6KLGI.js → chunk-3MUCUZ46.js}

@@ -1,15 +1,15 @@
 import {
   BackupManager,
   safeParseAndValidate
-} from "./chunk-WS6OA7H6.js";
+} from "./chunk-4MJ52WBH.js";
 import {
   atomicWriteJSON
 } from "./chunk-43X6JBEM.js";
 import {
   getTrieDirectory
-} from "./chunk-45Y5TLQZ.js";
+} from "./chunk-SH7H3WRU.js";
 
-// src/guardian/insight-store.ts
+// src/agent/insight-store.ts
 import { mkdir, readFile } from "fs/promises";
 import { existsSync } from "fs";
 import { join } from "path";
@@ -37,7 +37,7 @@ var InsightDetailsSchema = z.object({
   patternsCount: z.number().optional(),
   topPattern: z.string().optional()
 });
-var GuardianInsightSchema = z.object({
+var InsightSchema = z.object({
   id: z.string(),
   type: z.enum(["observation", "warning", "suggestion", "celebration", "question"]),
   message: z.string(),
@@ -53,7 +53,7 @@ var GuardianInsightSchema = z.object({
 });
 var InsightStoreDataSchema = z.object({
   version: z.literal(1),
-  insights: z.array(GuardianInsightSchema),
+  insights: z.array(InsightSchema),
   cooldowns: z.record(z.string(), z.number()),
   // insightKey -> timestamp
   dismissedIds: z.array(z.string()),
@@ -96,7 +96,7 @@ var InsightStore = class _InsightStore {
    * Get the storage file path
    */
   getStorePath() {
-    return join(getTrieDirectory(this.projectPath), "memory", "guardian-insights.json");
+    return join(getTrieDirectory(this.projectPath), "memory", "insights.json");
   }
   /**
    * Create empty data structure
@@ -431,10 +431,10 @@ function clearInsightStores() {
 
 export {
   InsightDetailsSchema,
-  GuardianInsightSchema,
+  InsightSchema,
   InsightStoreDataSchema,
   InsightStore,
   getInsightStore,
   clearInsightStores
 };
-//# sourceMappingURL=chunk-4YJ6KLGI.js.map
+//# sourceMappingURL=chunk-3MUCUZ46.js.map

package/dist/chunk-3MUCUZ46.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/agent/insight-store.ts"],"sourcesContent":["/**\n * Insight Store - Persistent storage for insights\n * \n * Persists to: .trie/memory/insights.json\n * \n * Features:\n * - Insight persistence across restarts\n * - Cooldown state persistence (prevents duplicate insights)\n * - Dismissed insight tracking\n * - Atomic writes with backup rotation\n * - Zod validation for data integrity\n */\n\nimport { mkdir, readFile } from 'fs/promises';\nimport { existsSync } from 'fs';\nimport { join } from 'path';\nimport { getTrieDirectory } from '../utils/workspace.js';\nimport { z } from 'zod';\nimport { atomicWriteJSON } from '../utils/atomic-write.js';\nimport { BackupManager } from '../utils/backup-manager.js';\nimport { safeParseAndValidate } from '../memory/validation.js';\n\n// ============================================================================\n// Schemas\n// ============================================================================\n\n/**\n * 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z.enum(['observation', 'warning', 'suggestion', 'celebration', 'question']),\n  message: z.string(),\n  context: z.string().optional(),\n  suggestedAction: z.string().optional(),\n  actionCommand: z.string().optional(),\n  relatedIssues: z.array(z.string()),\n  priority: z.number().min(1).max(10),\n  timestamp: z.number(),\n  dismissed: z.boolean(),\n  category: z.enum(['security', 'quality', 'performance', 'pattern', 'progress', 'general']),\n  details: InsightDetailsSchema.optional(),\n});\n\nexport type Insight = z.infer<typeof InsightSchema>;\n\n/**\n * Schema for the entire insight store file\n */\nexport const InsightStoreDataSchema = z.object({\n  version: z.literal(1),\n  insights: z.array(InsightSchema),\n  cooldowns: z.record(z.string(), z.number()), // insightKey -> timestamp\n  dismissedIds: z.array(z.string()), // Track dismissed insight IDs permanently\n  lastUpdated: z.string(),\n});\n\nexport type InsightStoreData = z.infer<typeof InsightStoreDataSchema>;\n\n// ============================================================================\n// InsightStore Class\n// ============================================================================\n\n/**\n * Persistent store for insights\n * \n * Usage:\n * ```typescript\n * const store = new InsightStore(projectPath);\n * await store.load();\n * \n * await store.addInsight(insight);\n * const active = store.getActiveInsights();\n * await store.dismissInsight(insightId);\n * ```\n */\nexport class InsightStore {\n  private projectPath: string;\n  private data: InsightStoreData;\n  private loaded: boolean = false;\n  private dirty: boolean = false;\n  \n  // Default cooldown periods (in ms)\n  static readonly COOLDOWNS: Record<string, number> = {\n    'pre-push-warning': 60000,       // 1 min between pre-push warnings\n    'security-warning': 30000,       // 30s between security warnings\n    'new-issues': 30000,             // 30s between new issue observations\n    'celebration': 60000,            // 1 min between celebrations\n    'pattern-suggestion': 120000,    // 2 min between pattern suggestions\n    'accessibility-visual-qa': 300000, // 5 min between visual QA suggestions\n    'goal-suggestion': 300000,       // 5 min between goal suggestions\n    'risk-prediction': 180000,       // 3 min between risk predictions\n    'hypothesis-update': 600000,     // 10 min between hypothesis updates\n    'auto-escalation': 300000,       // 5 min between auto-escalations\n  };\n  \n  constructor(projectPath: string) {\n    this.projectPath = projectPath;\n    this.data = this.createEmptyData();\n  }\n  \n  /**\n   * Get the storage file path\n   */\n  private getStorePath(): string {\n    return join(getTrieDirectory(this.projectPath), 'memory', 'insights.json');\n  }\n  \n  /**\n   * Create empty data structure\n   */\n  private createEmptyData(): InsightStoreData {\n    return {\n      version: 1,\n      insights: [],\n      cooldowns: {},\n      dismissedIds: [],\n      lastUpdated: new 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package/dist/{chunk-6VIMBFUZ.js → chunk-3RRXWX3V.js}

@@ -6,20 +6,18 @@ import {
 } from "./chunk-43X6JBEM.js";
 import {
   getTrieDirectory
-} from "./chunk-45Y5TLQZ.js";
-import {
-  __require
-} from "./chunk-DGUM43GV.js";
+} from "./chunk-SH7H3WRU.js";
 
 // src/context/codebase-index.ts
 import { readFile, stat } from "fs/promises";
 import { createHash } from "crypto";
 import { join } from "path";
-import { existsSync } from "fs";
+import { existsSync, readFileSync } from "fs";
 var CodebaseIndex = class {
   trie = new Trie();
   projectPath;
   indexPath;
+  lastUpdated = null;
   constructor(projectPath) {
     this.projectPath = projectPath;
     this.indexPath = join(getTrieDirectory(projectPath), "codebase-index.json");
@@ -31,10 +29,13 @@ var CodebaseIndex = class {
   load() {
     if (!existsSync(this.indexPath)) return;
     try {
-      const raw = JSON.parse(__require("fs").readFileSync(this.indexPath, "utf-8"));
+      const raw = JSON.parse(readFileSync(this.indexPath, "utf-8"));
       if (raw.trie) {
         this.trie = Trie.fromJSON(raw.trie);
       }
+      if (raw.lastUpdated) {
+        this.lastUpdated = raw.lastUpdated;
+      }
     } catch (error) {
       console.error("Failed to load codebase index:", error);
     }
@@ -43,9 +44,10 @@ var CodebaseIndex = class {
    * Save index to disk
    */
   async save() {
+    this.lastUpdated = (/* @__PURE__ */ new Date()).toISOString();
     const data = {
       version: 1,
-      lastUpdated: (/* @__PURE__ */ new Date()).toISOString(),
+      lastUpdated: this.lastUpdated,
       fileCount: this.trie.getWithPrefix("").length,
       trie: this.trie.toJSON()
     };
@@ -76,8 +78,8 @@ var CodebaseIndex = class {
       const existing = this.trie.search(filePath);
       if (existing.found && existing.value) {
         if (existing.value.hash === hash) {
-          metadata.violations = existing.value.violations;
-          metadata.lastScanned = existing.value.lastScanned;
+          if (existing.value.violations) metadata.violations = existing.value.violations;
+          if (existing.value.lastScanned != null) metadata.lastScanned = existing.value.lastScanned;
         }
       }
       this.trie.insert(filePath, metadata);
@@ -133,7 +135,7 @@ var CodebaseIndex = class {
    */
   getFilesByType(type) {
     const allFiles = this.trie.getWithPrefix("");
-    return allFiles.map((m) => m.value).filter((v) => v !== null && v.type === type);
+    return allFiles.map((m) => m.value).filter((v) => v != null && v.type === type);
   }
   /**
    * Record goal violation scan result for a file
@@ -144,14 +146,15 @@ var CodebaseIndex = class {
     metadata.lastScanned = Date.now();
     if (!metadata.violations) metadata.violations = [];
     metadata.violations = metadata.violations.filter((v) => v.goalId !== goalId);
-    metadata.violations.push({
+    const entry = {
       goalId,
       goalDescription,
       found,
-      details,
-      confidence,
       timestamp: Date.now()
-    });
+    };
+    if (details !== void 0) entry.details = details;
+    if (confidence !== void 0) entry.confidence = confidence;
+    metadata.violations.push(entry);
     this.trie.insert(filePath, metadata);
   }
   /**
@@ -181,7 +184,8 @@ var CodebaseIndex = class {
       totalSize: allFiles.reduce((sum, f) => sum + f.size, 0),
       filesByType: {},
       scannedFiles: allFiles.filter((f) => f.lastScanned).length,
-      filesWithViolations: allFiles.filter((f) => f.violations && f.violations.some((v) => v.found)).length
+      filesWithViolations: allFiles.filter((f) => f.violations && f.violations.some((v) => v.found)).length,
+      lastUpdated: this.lastUpdated
     };
     for (const file of allFiles) {
       stats.filesByType[file.type] = (stats.filesByType[file.type] || 0) + 1;
@@ -201,7 +205,7 @@ var CodebaseIndex = class {
         file.violations = file.violations.filter((v) => v.timestamp > cutoff);
         cleared += before - file.violations.length;
         if (file.violations.length === 0) {
-          file.lastScanned = void 0;
+          delete file.lastScanned;
         }
         this.trie.insert(file.path, file);
       }
@@ -213,4 +217,4 @@ var CodebaseIndex = class {
 export {
   CodebaseIndex
 };
-//# sourceMappingURL=chunk-6VIMBFUZ.js.map
+//# sourceMappingURL=chunk-3RRXWX3V.js.map

package/dist/chunk-3RRXWX3V.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/context/codebase-index.ts"],"sourcesContent":["/**\n * Codebase Index - Fast file indexing for goal violation detection\n * \n * Uses Trie structure for efficient file lookup and caching to avoid\n * re-scanning unchanged files.\n * \n * For large codebases, this dramatically improves goal check performance:\n * - Indexes file hashes to detect changes\n * - Caches AI analysis results\n * - Uses Trie for O(m) lookups where m = path length\n * - Stores file metadata (size, type, last modified, etc.)\n */\n\nimport { readFile, stat } from 'fs/promises';\nimport { createHash } from 'crypto';\nimport { join } from 'path';\nimport { existsSync, readFileSync } from 'fs';\nimport { Trie } from '../trie/trie.js';\nimport { getTrieDirectory } from '../utils/workspace.js';\nimport { atomicWriteJSON } from '../utils/atomic-write.js';\n\nexport interface FileMetadata {\n  path: string;\n  hash: string; // SHA-256 of content\n  size: number;\n  lastModified: number;\n  type: string; // Extension\n  lastScanned?: number; // Timestamp of last AI scan\n  violations?: {\n    goalId: string;\n    goalDescription: string;\n    found: boolean;\n    details?: string;\n    confidence?: number;\n    timestamp: number;\n  }[];\n}\n\nexport interface CodebaseIndexData {\n  version: number;\n  lastUpdated: string;\n  fileCount: number;\n  trie: any; // Serialized Trie\n}\n\nexport class CodebaseIndex {\n  private trie: Trie<FileMetadata> = new Trie();\n  private projectPath: string;\n  private indexPath: string;\n  private lastUpdated: string | null = null;\n\n  constructor(projectPath: string) {\n    this.projectPath = projectPath;\n    this.indexPath = join(getTrieDirectory(projectPath), 'codebase-index.json');\n    this.load();\n  }\n\n  /**\n   * Load index from disk if it exists\n   */\n  private load(): void {\n    if (!existsSync(this.indexPath)) return;\n\n    try {\n      const raw = JSON.parse(readFileSync(this.indexPath, 'utf-8'));\n      if (raw.trie) {\n        this.trie = Trie.fromJSON<FileMetadata>(raw.trie);\n      }\n      if (raw.lastUpdated) {\n        this.lastUpdated = raw.lastUpdated;\n      }\n    } catch (error) {\n      console.error('Failed to load codebase index:', error);\n    }\n  }\n\n  /**\n   * Save index to disk\n   */\n  async save(): Promise<void> {\n    this.lastUpdated = new Date().toISOString();\n    const data: CodebaseIndexData = {\n      version: 1,\n      lastUpdated: this.lastUpdated,\n      fileCount: this.trie.getWithPrefix('').length,\n      trie: this.trie.toJSON(),\n    };\n\n    await atomicWriteJSON(this.indexPath, data);\n  }\n\n  /**\n   * Add or update a file in the index\n   * Returns null if the file doesn't exist or can't be read\n   */\n  async indexFile(filePath: string): Promise<FileMetadata | null> {\n    // Safety check: if filePath is already absolute and doesn't start with projectPath,\n    // this is likely a bug (stale cache entry from different project)\n    if (filePath.startsWith('/')) {\n      // Already absolute - check if it's within our project\n      if (!filePath.toLowerCase().startsWith(this.projectPath.toLowerCase())) {\n        return null; // Wrong project, skip silently\n      }\n      // It's absolute but within our project - use as-is\n    }\n    \n    // Build absolute path: if filePath is relative, join with projectPath\n    // If filePath is absolute (and within project), use it directly\n    const absolutePath = filePath.startsWith('/') ? filePath : join(this.projectPath, filePath);\n    \n    try {\n      const content = await readFile(absolutePath, 'utf-8');\n      const stats = await stat(absolutePath);\n      const hash = createHash('sha256').update(content).digest('hex');\n\n      const metadata: FileMetadata = {\n        path: filePath,\n        hash,\n        size: stats.size,\n        lastModified: stats.mtimeMs,\n        type: filePath.split('.').pop() || '',\n      };\n\n      // Check if file exists in index\n      const existing = this.trie.search(filePath);\n      if (existing.found && existing.value) {\n        // File exists - preserve violations if hash matches\n        if (existing.value.hash === hash) {\n          if (existing.value.violations) metadata.violations = existing.value.violations;\n          if (existing.value.lastScanned != null) metadata.lastScanned = existing.value.lastScanned;\n        }\n      }\n\n      this.trie.insert(filePath, metadata);\n      return metadata;\n    } catch (error) {\n      // File doesn't exist, was deleted, or can't be read - return null\n      return null;\n    }\n  }\n\n  /**\n   * Get file metadata from index\n   */\n  getFile(filePath: string): FileMetadata | null {\n    const result = this.trie.search(filePath);\n    return result.found && result.value ? result.value : null;\n  }\n\n  /**\n   * Check if file has changed since last index\n   */\n  async hasChanged(filePath: string): Promise<boolean> {\n    // Safety check for absolute paths from wrong project\n    if (filePath.startsWith('/') && !filePath.toLowerCase().startsWith(this.projectPath.toLowerCase())) {\n      return true; // Wrong project, treat as changed (will be skipped later)\n    }\n    \n    const metadata = this.getFile(filePath);\n    if (!metadata) return true; // Not indexed = changed\n\n    // Build absolute path correctly\n    const absolutePath = filePath.startsWith('/') ? filePath : join(this.projectPath, filePath);\n    try {\n      const stats = await stat(absolutePath);\n      if (stats.mtimeMs !== metadata.lastModified) return true;\n\n      // Double-check with hash for certainty\n      const content = await readFile(absolutePath, 'utf-8');\n      const hash = createHash('sha256').update(content).digest('hex');\n      return hash !== metadata.hash;\n    } catch {\n      return true; // Error = assume changed\n    }\n  }\n\n  /**\n   * Get files in a directory\n   */\n  getDirectoryFiles(directoryPath: string): FileMetadata[] {\n    const prefix = directoryPath.endsWith('/') ? directoryPath : `${directoryPath}/`;\n    const matches = this.trie.getWithPrefix(prefix);\n    return matches.map(m => m.value).filter((v): v is FileMetadata => v !== null);\n  }\n\n  /**\n   * Get files that match a pattern (uses Trie prefix matching)\n   */\n  getFilesWithPrefix(prefix: string): FileMetadata[] {\n    const matches = this.trie.getWithPrefix(prefix);\n    return matches.map(m => m.value).filter((v): v is FileMetadata => v !== null);\n  }\n\n  /**\n   * Get files by type (extension)\n   */\n  getFilesByType(type: string): FileMetadata[] {\n    const allFiles = this.trie.getWithPrefix('');\n    return allFiles\n      .map(m => m.value)\n      .filter((v): v is FileMetadata => v != null && v.type === type);\n  }\n\n  /**\n   * Record goal violation scan result for a file\n   */\n  recordViolation(\n    filePath: string,\n    goalId: string,\n    goalDescription: string,\n    found: boolean,\n    details?: string,\n    confidence?: number\n  ): void {\n    const metadata = this.getFile(filePath);\n    if (!metadata) return;\n\n    metadata.lastScanned = Date.now();\n    if (!metadata.violations) metadata.violations = [];\n\n    // Remove existing violation for this goal\n    metadata.violations = metadata.violations.filter(v => v.goalId !== goalId);\n\n    // Add new violation result\n    const entry: { goalId: string; goalDescription: string; found: boolean; timestamp: number; details?: string; confidence?: number } = {\n      goalId,\n      goalDescription,\n      found,\n      timestamp: Date.now(),\n    };\n    if (details !== undefined) entry.details = details;\n    if (confidence !== undefined) entry.confidence = confidence;\n    metadata.violations.push(entry);\n\n    this.trie.insert(filePath, metadata);\n  }\n\n  /**\n   * Get cached violation results for a file\n   */\n  getCachedViolations(filePath: string, goalId?: string): FileMetadata['violations'] {\n    const metadata = this.getFile(filePath);\n    if (!metadata || !metadata.violations) return undefined;\n\n    if (goalId) {\n      return metadata.violations.filter(v => v.goalId === goalId);\n    }\n\n    return metadata.violations;\n  }\n\n  /**\n   * Check if the index is empty (needs initial indexing)\n   */\n  isEmpty(): boolean {\n    return this.trie.getWithPrefix('').length === 0;\n  }\n\n  /**\n   * Get statistics about the index\n   */\n  getStats(): {\n    totalFiles: number;\n    totalSize: number;\n    filesByType: Record<string, number>;\n    scannedFiles: number;\n    filesWithViolations: number;\n    lastUpdated: string | null;\n  } {\n    const allFiles = this.trie.getWithPrefix('').map(m => m.value).filter((v): v is FileMetadata => v !== null);\n\n    const stats = {\n      totalFiles: allFiles.length,\n      totalSize: allFiles.reduce((sum, f) => sum + f.size, 0),\n      filesByType: {} as Record<string, number>,\n      scannedFiles: allFiles.filter(f => f.lastScanned).length,\n      filesWithViolations: allFiles.filter(f => f.violations && f.violations.some(v => v.found)).length,\n      lastUpdated: this.lastUpdated,\n    };\n\n    for (const file of allFiles) {\n      stats.filesByType[file.type] = (stats.filesByType[file.type] || 0) + 1;\n    }\n\n    return stats;\n  }\n\n  /**\n   * Clear stale cached results (older than maxAgeMs)\n   */\n  clearStaleCache(maxAgeMs: number = 7 * 24 * 60 * 60 * 1000): number {\n    const allFiles = this.trie.getWithPrefix('').map(m => m.value).filter((v): v is FileMetadata => v !== null);\n    const cutoff = Date.now() - maxAgeMs;\n    let cleared = 0;\n\n    for (const file of allFiles) {\n      if (file.violations) {\n        const before = file.violations.length;\n        file.violations = file.violations.filter(v => v.timestamp > cutoff);\n        cleared += before - file.violations.length;\n        if (file.violations.length === 0) {\n          delete file.lastScanned;\n        }\n        this.trie.insert(file.path, file);\n      }\n    }\n\n  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package/dist/{chunk-WHIQAGB7.js → chunk-4C67GV3O.js}

@@ -3,7 +3,7 @@ import {
 } from "./chunk-6NLHFIYA.js";
 import {
   getTrieDirectory
-} from "./chunk-45Y5TLQZ.js";
+} from "./chunk-SH7H3WRU.js";
 
 // src/context/incident-index.ts
 import path2 from "path";
@@ -170,4 +170,4 @@ var IncidentIndex = class _IncidentIndex {
 export {
   IncidentIndex
 };
-//# sourceMappingURL=chunk-WHIQAGB7.js.map
+//# sourceMappingURL=chunk-4C67GV3O.js.map

package/dist/{chunk-WS6OA7H6.js → chunk-4MJ52WBH.js}

@@ -209,10 +209,9 @@ var ProjectSummarySchema = z.object({
   name: z.string(),
   path: z.string(),
   lastScan: z.string(),
-  healthScore: z.number(),
   totalIssues: z.number(),
   patterns: z.array(z.string())
-});
+}).passthrough();
 var PatternSummarySchema = z.object({
   pattern: z.string(),
   count: z.number(),
@@ -263,4 +262,4 @@ export {
   CompactedSummariesIndexSchema,
   safeParseAndValidate
 };
-//# sourceMappingURL=chunk-WS6OA7H6.js.map
+//# sourceMappingURL=chunk-4MJ52WBH.js.map

package/dist/chunk-4MJ52WBH.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/utils/backup-manager.ts","../src/memory/validation.ts"],"sourcesContent":["/**\n * Backup Manager\n * \n * Maintains rotational backups of critical data files.\n * Provides automatic recovery from corrupted files.\n * \n * Features:\n * - N rotational backups (default: 5)\n * - Automatic pruning of old backups\n * - Validation before recovery\n * - Timestamp-based backup naming\n */\n\nimport { copyFile, readdir, unlink, readFile, stat } from 'fs/promises';\nimport { existsSync } from 'fs';\nimport { dirname, basename, join } from 'path';\n\nexport interface BackupOptions {\n  /**\n   * Maximum number of backups to keep\n   * @default 5\n   */\n  maxBackups?: number;\n  \n  /**\n   * Custom validator function for backup validation\n   * Returns true if the backup is valid\n   */\n  validator?: (content: string) => boolean;\n}\n\nexport interface BackupInfo {\n  path: string;\n  timestamp: number;\n  size: number;\n}\n\n/**\n * Manages rotational backups for a file\n * \n * @example\n * ```typescript\n * const manager = new BackupManager('/path/to/issues.json');\n * \n * // Create backup before modifying\n * await manager.createBackup();\n * \n * // If corruption detected, recover\n * if (await manager.recoverFromBackup()) {\n *   console.log('Recovered from backup');\n * }\n * ```\n */\nexport class BackupManager {\n  private readonly filePath: string;\n  private readonly maxBackups: number;\n  private readonly validator: ((content: string) => boolean) | undefined;\n  private readonly backupDir: string;\n  private readonly baseFileName: string;\n\n  constructor(filePath: string, options: BackupOptions = {}) {\n    this.filePath = filePath;\n    this.maxBackups = options.maxBackups ?? 5;\n    this.validator = options.validator;\n    this.backupDir = dirname(filePath);\n    this.baseFileName = basename(filePath);\n  }\n\n  /**\n   * Create a backup of the current file\n   * \n   * @returns The backup file path, or null if source doesn't 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