@toxplanet/pegasus-sdk 1.0.1 → 1.1.0

package/tests/chemicals.js

@@ -1,165 +0,0 @@
-const PegasusSDK = require('../index');
-const { logInfo, logError } = require('@toxplanet/tphelper/logging');
-
-const ICONS = {
-  PASS: '[OK]',
-  FAIL: '[!!]',
-  WARN: '[?]'
-};
-
-async function runChemicalTests() {
-  const sdk = new PegasusSDK();
-  let testsPassed = 0;
-  let testsFailed = 0;
-
-  const log = (test, status, details = '') => {
-    logInfo('pegasus-sdk-tests', `${test}: ${status} ${details}`);
-    if (status === ICONS.PASS) testsPassed++;
-    else if (status === ICONS.FAIL) testsFailed++;
-  };
-
-  const print = (message) => {
-    logInfo('pegasus-sdk-tests', message);
-  };
-
-  let createdChemicalId = null;
-
-  try {
-    await sdk.connect();
-    log('Connection', ICONS.PASS);
-
-    const testChemical = {
-      source_id: `test-chemical-${Date.now()}`,
-      chemical_name: 'Test Chemical (Benzene)',
-      chemical_meta: {
-        test: true,
-        description: 'This is a test chemical record'
-      },
-      chemical_identifiers: [
-        { type: 'cas', value: '71-43-2' },
-        { type: 'pubchem_cid', value: 'CID241' }
-      ],
-      chemical_synonyms: ['Test Synonym 1', 'Test Synonym 2'],
-      chemical_categories: ['test', 'aromatic'],
-      created_at: new Date(),
-      updated_at: new Date()
-    };
-
-    print('\n' + '='.repeat(60));
-    print('TEST 1: Create Chemical');
-    print('='.repeat(60));
-
-    const created = await sdk.chemicals.createChemical(testChemical);
-    createdChemicalId = created.chemicalId;
-
-    if (created && created.chemicalId) {
-      log('Create Chemical', ICONS.PASS, `(ID: ${created.chemicalId.substring(0, 8)}...)`);
-      print(`  Source ID: ${created.sourceId}`);
-      print(`  Name: ${created.chemicalName}`);
-      print(`  Identifiers: ${created.chemicalIdentifiers.length} found`);
-      print(`  Synonyms: ${created.chemicalSynonyms.length} found`);
-    } else {
-      log('Create Chemical', ICONS.FAIL, 'No ID returned');
-      testsFailed++;
-    }
-
-    print('\n' + '='.repeat(60));
-    print('TEST 2: Get Chemical By ID');
-    print('='.repeat(60));
-
-    const retrieved = await sdk.chemicals.getChemicalById(createdChemicalId);
-
-    if (retrieved && retrieved.chemicalId === createdChemicalId) {
-      log('Get Chemical By ID', ICONS.PASS);
-      print(`  Retrieved Name: ${retrieved.chemicalName}`);
-      print(`  Source ID: ${retrieved.sourceId}`);
-      
-      if (retrieved.chemicalName === testChemical.chemical_name) {
-        log('Name Match', ICONS.PASS);
-      } else {
-        log('Name Match', ICONS.FAIL, `Expected: ${testChemical.chemical_name}, Got: ${retrieved.chemicalName}`);
-      }
-
-      if (retrieved.sourceId === testChemical.source_id) {
-        log('Source ID Match', ICONS.PASS);
-      } else {
-        log('Source ID Match', ICONS.FAIL);
-      }
-
-      if (Array.isArray(retrieved.chemicalIdentifiers) && retrieved.chemicalIdentifiers.length === 2) {
-        log('Identifiers Match', ICONS.PASS, `(${retrieved.chemicalIdentifiers.length} identifiers)`);
-      } else {
-        log('Identifiers Match', ICONS.FAIL);
-      }
-
-      if (Array.isArray(retrieved.chemicalSynonyms) && retrieved.chemicalSynonyms.length === 2) {
-        log('Synonyms Match', ICONS.PASS, `(${retrieved.chemicalSynonyms.length} synonyms)`);
-      } else {
-        log('Synonyms Match', ICONS.FAIL);
-      }
-    } else {
-      log('Get Chemical By ID', ICONS.FAIL, 'Chemical not found or ID mismatch');
-    }
-
-    print('\n' + '='.repeat(60));
-    print('TEST 3: Get Non-Existent Chemical');
-    print('='.repeat(60));
-
-    const nonExistent = await sdk.chemicals.getChemicalById('00000000-0000-0000-0000-000000000000');
-    
-    if (nonExistent === null) {
-      log('Get Non-Existent', ICONS.PASS, '(Correctly returned null)');
-    } else {
-      log('Get Non-Existent', ICONS.FAIL, 'Should return null for non-existent ID');
-    }
-
-    print('\n' + '='.repeat(60));
-    print('TEST 4: Delete Chemical');
-    print('='.repeat(60));
-
-    const deleted = await sdk.chemicals.deleteChemical(createdChemicalId);
-
-    if (deleted && deleted.chemicalId === createdChemicalId) {
-      log('Delete Chemical', ICONS.PASS, `(Deleted ID: ${deleted.chemicalId.substring(0, 8)}...)`);
-    } else {
-      log('Delete Chemical', ICONS.FAIL, 'Delete did not return expected result');
-    }
-
-    print('\n' + '='.repeat(60));
-    print('TEST 5: Verify Deletion');
-    print('='.repeat(60));
-
-    const shouldBeGone = await sdk.chemicals.getChemicalById(createdChemicalId);
-
-    if (shouldBeGone === null) {
-      log('Verify Deletion', ICONS.PASS, '(Chemical no longer exists)');
-    } else {
-      log('Verify Deletion', ICONS.FAIL, 'Chemical still exists after deletion');
-    }
-
-    print('\n' + '='.repeat(60));
-    print(`${ICONS.PASS} Tests Passed: ${testsPassed}`);
-    if (testsFailed > 0) print(`${ICONS.FAIL} Tests Failed: ${testsFailed}`);
-    print('='.repeat(60));
-
-  } catch (error) {
-    logError('pegasus-sdk-tests', 'chemicals-tests', 'runChemicalTests', error);
-    print(`\n${ICONS.FAIL} Test Failed: ${error.message}`);
-    
-    if (createdChemicalId) {
-      print('\nCleaning up test chemical...');
-      try {
-        await sdk.chemicals.deleteChemical(createdChemicalId);
-        print('Cleanup successful');
-      } catch (cleanupError) {
-        print('Cleanup failed (chemical may need manual deletion)');
-      }
-    }
-    
-    process.exit(1);
-  } finally {
-    await sdk.disconnect();
-  }
-}
-
-runChemicalTests();

package/tests/search.js

@@ -1,138 +0,0 @@
-const PegasusSDK = require('../index');
-const { logInfo, logError } = require('@toxplanet/tphelper/logging');
-
-const ICONS = {
-  PASS: '[OK]',
-  FAIL: '[!!]',
-  WARN: '[?]'
-};
-
-async function runTests() {
-  const sdk = new PegasusSDK();
-  let testsPassed = 0;
-  let testsFailed = 0;
-
-  const log = (test, status, details = '') => {
-    logInfo('pegasus-sdk-tests', `${test}: ${status} ${details}`);
-    if (status === ICONS.PASS) testsPassed++;
-    else if (status === ICONS.FAIL) testsFailed++;
-  };
-
-  const print = (message) => {
-    logInfo('pegasus-sdk-tests', message);
-  };
-
-  try {
-    await sdk.connect();
-    log('Connection', ICONS.PASS);
-
-    const health = await sdk.healthCheck();
-    const pgStatus = health.postgres.connected ? ICONS.PASS : ICONS.FAIL;
-    const osStatus = health.opensearch?.connected ? ICONS.PASS : ICONS.WARN;
-    log('Health Check', health.postgres.connected && health.opensearch?.connected ? ICONS.PASS : ICONS.WARN, `(PG:${pgStatus} OS:${osStatus})`);
-
-    if (!sdk.search?.searchChemicals) throw new Error('Search service not found');
-    log('Search Service', ICONS.PASS);
-
-    const emptyResult = await sdk.search.searchChemicals('');
-    if (emptyResult.results.length !== 0) throw new Error('Empty query should return no results');
-    log('Empty Query', ICONS.PASS);
-
-    const basicResult = await sdk.search.searchChemicals('test', { limit: 5 });
-    if (!Array.isArray(basicResult.results)) throw new Error('Invalid result structure');
-    log('Basic Search', ICONS.PASS, `(${basicResult.results.length} results)`);
-
-    const customResult = await sdk.search.searchChemicals('carbon', {
-      limit: 3,
-      casExact: 100,
-      nameExact: 50,
-      synonymExact: 75
-    });
-    log('Custom Boost', ICONS.PASS, `(${customResult.results.length} results)`);
-
-    const casResult = await sdk.search.searchChemicals('7440-06-4', { limit: 3 });
-    log('CAS Search', ICONS.PASS, `(${casResult.results.length} results)`);
-
-    const reversedCasResult = await sdk.search.searchChemicals('06/4/7440', { limit: 3 });
-    log('CAS Reversed Format', ICONS.PASS, `(${reversedCasResult.results.length} results)`);
-
-    if (basicResult.results.length > 0) {
-      const result = basicResult.results[0];
-      const requiredFields = ['id', 'name', 'cas', 'identifiers', 'synonyms', 'score'];
-      const missingFields = requiredFields.filter(field => !(field in result));
-      if (missingFields.length > 0) throw new Error(`Missing fields: ${missingFields.join(', ')}`);
-      if (!Array.isArray(result.cas) || !Array.isArray(result.identifiers) || !Array.isArray(result.synonyms)) {
-        throw new Error('Array fields invalid');
-      }
-      if (typeof result.score !== 'number') throw new Error('Score not a number');
-      log('Result Structure', ICONS.PASS);
-    } else {
-      log('Result Structure', ICONS.WARN, '(no results to validate)');
-    }
-
-    const startsWithResult = await sdk.search.searchStartsWith('test', 3);
-    const containsResult = await sdk.search.searchContains('test', 3);
-    const exactResult = await sdk.search.searchExact('test', 3);
-    if (!startsWithResult.results || !containsResult.results || !exactResult.results) {
-      throw new Error('Forwarding methods failed');
-    }
-    log('SearchService Methods', ICONS.PASS, `(starts:${startsWithResult.results.length} contains:${containsResult.results.length} exact:${exactResult.results.length})`);
-
-    const casExactResult = await sdk.search.searchByCAS('7440-06-4', 'exact');
-    const casPrefixResult = await sdk.search.searchByCAS('7440', 'prefix');
-    log('CAS Methods', ICONS.PASS, `(exact:${casExactResult.results.length} prefix:${casPrefixResult.results.length})`);
-
-    const identifierResult = await sdk.search.searchByIdentifier('CCCO', 'exact');
-    log('Identifier Method', ICONS.PASS, `(${identifierResult.results.length} results)`);
-
-    const synonymExactResult = await sdk.search.searchBySynonym('grain alcohol', 'exact');
-    const synonymPrefixResult = await sdk.search.searchBySynonym('alco', 'prefix');
-    log('Synonym Methods', ICONS.PASS, `(exact:${synonymExactResult.results.length} prefix:${synonymPrefixResult.results.length})`);
-
-    const nameSearchResult = await sdk.chemicals.searchByName('platinum', 3);
-    const synonymSearchResult = await sdk.chemicals.searchBySynonym('alcohol', 3);
-    if (!nameSearchResult.results || !synonymSearchResult.results) {
-      throw new Error('ChemicalsService methods failed');
-    }
-    log('ChemicalsService Methods', ICONS.PASS, `(name:${nameSearchResult.results.length} synonym:${synonymSearchResult.results.length})`);
-
-    const highLimitResult = await sdk.search.searchChemicals('carbon', { limit: 20 });
-    log('High Limit Search', ICONS.PASS, `(${highLimitResult.results.length} results)`);
-
-    print(`\n${'='.repeat(60)}`);
-    print('FINAL TEST: Benzene Search Results');
-    print('='.repeat(60));
-    const benzeneResults = await sdk.search.searchChemicals('benzene', { limit: 3 });
-    print(`Found ${benzeneResults.results.length} results for "benzene":\n`);
-    benzeneResults.results.forEach((result, i) => {
-      print(`${i + 1}. ${result.name}`);
-      print(`   CAS: ${result.cas.join(', ') || 'N/A'}`);
-      print(`   Score: ${result.score.toFixed(2)}`);
-      if (result.synonyms.length > 0) {
-        print(`   Synonyms: ${result.synonyms.slice(0, 3).join(', ')}${result.synonyms.length > 3 ? '...' : ''}`);
-      }
-      print('');
-    });
-
-    print('='.repeat(60));
-    print(`${ICONS.PASS} Tests Passed: ${testsPassed}`);
-    if (testsFailed > 0) print(`${ICONS.FAIL} Tests Failed: ${testsFailed}`);
-    print('='.repeat(60));
-
-  } catch (error) {
-    logError('pegasus-sdk-tests', 'search-tests', 'runTests', error);
-    print(`\n${ICONS.FAIL} Test Failed: ${error.message}`);
-    process.exit(1);
-  } finally {
-    await sdk.disconnect();
-  }
-}
-
-if (require.main === module) {
-  runTests().catch((error) => {
-    logError('pegasus-sdk-tests', 'search-tests', 'main', error);
-    process.exit(1);
-  });
-}
-
-module.exports = runTests;