@timmeck/brain-core 2.36.57 → 2.36.58

package/dist/metacognition/__tests__/evolution-engine.test.js

@@ -0,0 +1,473 @@
+import { describe, it, expect, vi, beforeEach, afterEach } from 'vitest';
+import Database from 'better-sqlite3';
+vi.mock('../../utils/logger.js', () => ({
+    getLogger: () => ({
+        info: vi.fn(),
+        warn: vi.fn(),
+        error: vi.fn(),
+        debug: vi.fn(),
+    }),
+}));
+import { ParameterRegistry } from '../parameter-registry.js';
+import { EvolutionEngine, runEvolutionMigration, } from '../evolution-engine.js';
+/* ------------------------------------------------------------------ */
+/*  Helpers                                                           */
+/* ------------------------------------------------------------------ */
+function makeConfig(overrides = {}) {
+    return {
+        brainName: 'test-brain',
+        populationSize: 5,
+        mutationRate: 0.15,
+        eliteCount: 1,
+        tournamentSize: 2,
+        generationEvery: 10,
+        ...overrides,
+    };
+}
+function registerTestParameters(registry) {
+    registry.registerAll([
+        { engine: 'scoring', name: 'threshold', value: 0.5, min: 0, max: 1, description: 'Score threshold' },
+        { engine: 'scoring', name: 'weight', value: 0.8, min: 0, max: 2, description: 'Score weight' },
+        { engine: 'learning', name: 'rate', value: 0.01, min: 0.001, max: 0.1, description: 'Learning rate' },
+    ]);
+}
+function makeMockDataSources(overrides = {}) {
+    return {
+        getReportCards: () => [
+            { engine: 'scoring', combined_score: 0.7 },
+            { engine: 'learning', combined_score: 0.6 },
+        ],
+        getGoalProgress: () => 0.5,
+        getPredictionAccuracy: () => 0.4,
+        getPrincipleCount: () => 20,
+        getHypothesisCount: () => 30,
+        ...overrides,
+    };
+}
+function makeIndividual(overrides = {}) {
+    return {
+        id: 1,
+        generation: 0,
+        genome: { 'scoring:threshold': 0.5, 'scoring:weight': 0.8, 'learning:rate': 0.01 },
+        fitness: 0.5,
+        rank: 1,
+        isActive: false,
+        parentAId: null,
+        parentBId: null,
+        mutationCount: 0,
+        ...overrides,
+    };
+}
+/* ------------------------------------------------------------------ */
+/*  Tests                                                             */
+/* ------------------------------------------------------------------ */
+describe('EvolutionEngine', () => {
+    let db;
+    let registry;
+    let engine;
+    beforeEach(() => {
+        db = new Database(':memory:');
+        registry = new ParameterRegistry(db);
+        registerTestParameters(registry);
+        engine = new EvolutionEngine(db, registry, makeConfig());
+    });
+    afterEach(() => {
+        db.close();
+    });
+    /* ---------- creation ---------- */
+    it('creates evolution tables on construction', () => {
+        const tables = db
+            .prepare("SELECT name FROM sqlite_master WHERE type = 'table' ORDER BY name")
+            .all();
+        const names = tables.map((t) => t.name);
+        expect(names).toContain('evolution_generations');
+        expect(names).toContain('evolution_individuals');
+        expect(names).toContain('evolution_lineage');
+    });
+    it('runEvolutionMigration() is idempotent', () => {
+        expect(() => runEvolutionMigration(db)).not.toThrow();
+        expect(() => runEvolutionMigration(db)).not.toThrow();
+    });
+    it('restores currentGeneration from DB on construction', () => {
+        // Insert a generation record to simulate prior history
+        db.prepare(`
+      INSERT INTO evolution_generations (generation, best_fitness, avg_fitness, worst_fitness, population_size, diversity)
+      VALUES (7, 0.9, 0.5, 0.1, 5, 0.3)
+    `).run();
+        const engine2 = new EvolutionEngine(db, registry, makeConfig());
+        const status = engine2.getStatus();
+        expect(status.currentGeneration).toBe(7);
+    });
+    /* ---------- getStatus (initial) ---------- */
+    it('getStatus() returns correct initial state', () => {
+        const status = engine.getStatus();
+        expect(status.currentGeneration).toBe(0);
+        expect(status.populationSize).toBe(5);
+        expect(status.bestFitness).toBe(0);
+        expect(status.avgFitness).toBe(0);
+        expect(status.totalIndividuals).toBe(0);
+        expect(status.isInitialized).toBe(false);
+        expect(status.champion).toBeNull();
+        expect(status.config).toEqual({
+            populationSize: 5,
+            mutationRate: 0.15,
+            eliteCount: 1,
+            tournamentSize: 2,
+            generationEvery: 10,
+        });
+    });
+    /* ---------- initializePopulation ---------- */
+    it('initializePopulation() creates the configured number of individuals', () => {
+        engine.initializePopulation();
+        const status = engine.getStatus();
+        expect(status.totalIndividuals).toBe(5);
+        expect(status.isInitialized).toBe(true);
+        const pop = engine.getPopulation(0);
+        expect(pop.length).toBe(5);
+        // All individuals should have genomes with 3 keys
+        for (const ind of pop) {
+            expect(Object.keys(ind.genome)).toHaveLength(3);
+            expect(ind.generation).toBe(0);
+        }
+    });
+    it('initializePopulation() is idempotent — second call does nothing', () => {
+        engine.initializePopulation();
+        engine.initializePopulation();
+        const status = engine.getStatus();
+        expect(status.totalIndividuals).toBe(5);
+    });
+    it('initializePopulation() does nothing when registry has no parameters', () => {
+        const emptyDb = new Database(':memory:');
+        const emptyRegistry = new ParameterRegistry(emptyDb);
+        const emptyEngine = new EvolutionEngine(emptyDb, emptyRegistry, makeConfig());
+        emptyEngine.initializePopulation();
+        const status = emptyEngine.getStatus();
+        expect(status.totalIndividuals).toBe(0);
+        expect(status.isInitialized).toBe(false);
+        emptyDb.close();
+    });
+    /* ---------- evaluateFitness ---------- */
+    it('evaluateFitness() returns 0 when no data sources are set', () => {
+        const individual = makeIndividual();
+        const fitness = engine.evaluateFitness(individual);
+        expect(fitness).toBe(0);
+    });
+    it('evaluateFitness() computes a weighted fitness score from data sources', () => {
+        engine.setDataSources(makeMockDataSources());
+        engine.initializePopulation();
+        const individual = makeIndividual();
+        const fitness = engine.evaluateFitness(individual);
+        // fitness should be between 0 and 1
+        expect(fitness).toBeGreaterThanOrEqual(0);
+        expect(fitness).toBeLessThanOrEqual(1);
+        // With our mock data: metaCog=0.65, goal=0.5, pred=0.4, knowledge=0.5, novelty varies
+        // 0.65*0.4 + 0.5*0.2 + 0.4*0.2 + 0.5*0.1 + novelty*0.1
+        // = 0.26 + 0.10 + 0.08 + 0.05 + novelty*0.1
+        // Should be roughly 0.49 + novelty*0.1
+        expect(fitness).toBeGreaterThan(0.3);
+    });
+    it('evaluateFitness() handles data source errors gracefully', () => {
+        engine.setDataSources({
+            getReportCards: () => { throw new Error('DB error'); },
+            getGoalProgress: () => { throw new Error('DB error'); },
+            getPredictionAccuracy: () => { throw new Error('DB error'); },
+            getPrincipleCount: () => { throw new Error('DB error'); },
+            getHypothesisCount: () => { throw new Error('DB error'); },
+        });
+        engine.initializePopulation();
+        const individual = makeIndividual();
+        // Should not throw — all errors are caught internally
+        const fitness = engine.evaluateFitness(individual);
+        expect(fitness).toBeGreaterThanOrEqual(0);
+        expect(fitness).toBeLessThanOrEqual(1);
+    });
+    /* ---------- tournamentSelect ---------- */
+    it('tournamentSelect() returns the fittest contestant', () => {
+        const population = [
+            makeIndividual({ id: 1, fitness: 0.1 }),
+            makeIndividual({ id: 2, fitness: 0.9 }),
+            makeIndividual({ id: 3, fitness: 0.5 }),
+            makeIndividual({ id: 4, fitness: 0.3 }),
+            makeIndividual({ id: 5, fitness: 0.7 }),
+        ];
+        // Run many selections — the result should always be one of the population
+        const selections = new Set();
+        for (let i = 0; i < 50; i++) {
+            const selected = engine.tournamentSelect(population, 3);
+            expect(selected.fitness).toBeGreaterThanOrEqual(0);
+            expect(selected.fitness).toBeLessThanOrEqual(1);
+            selections.add(selected.id);
+        }
+        // Over 50 tries, tournament selection should have selected multiple individuals
+        expect(selections.size).toBeGreaterThanOrEqual(1);
+    });
+    it('tournamentSelect() works with tournament size larger than population', () => {
+        const population = [
+            makeIndividual({ id: 1, fitness: 0.2 }),
+            makeIndividual({ id: 2, fitness: 0.8 }),
+        ];
+        // Tournament size 10 > population size 2 — should clamp via Math.min
+        const selected = engine.tournamentSelect(population, 10);
+        expect(selected).toBeDefined();
+        // Selection picks with replacement, so result is one of the two individuals
+        expect([0.2, 0.8]).toContain(selected.fitness);
+    });
+    /* ---------- crossover ---------- */
+    it('crossover() produces a child with genes from both parents', () => {
+        const parentA = makeIndividual({
+            genome: { 'scoring:threshold': 0.1, 'scoring:weight': 0.2, 'learning:rate': 0.03 },
+        });
+        const parentB = makeIndividual({
+            genome: { 'scoring:threshold': 0.9, 'scoring:weight': 1.8, 'learning:rate': 0.09 },
+        });
+        // Run crossover many times to check both parents can contribute
+        const seenFromA = new Set();
+        const seenFromB = new Set();
+        for (let i = 0; i < 100; i++) {
+            const { child, crossoverPoints } = engine.crossover(parentA, parentB);
+            // Child should have all 3 keys
+            expect(Object.keys(child)).toHaveLength(3);
+            for (const key of Object.keys(child)) {
+                if (child[key] === parentA.genome[key])
+                    seenFromA.add(key);
+                if (child[key] === parentB.genome[key])
+                    seenFromB.add(key);
+            }
+            // crossoverPoints should only contain keys taken from parentB
+            for (const point of crossoverPoints) {
+                expect(child[point]).toBe(parentB.genome[point]);
+            }
+        }
+        // Over 100 iterations, both parents should contribute at least one gene
+        expect(seenFromA.size).toBeGreaterThan(0);
+        expect(seenFromB.size).toBeGreaterThan(0);
+    });
+    it('crossover() handles disjoint genome keys (union of both)', () => {
+        const parentA = makeIndividual({
+            genome: { 'scoring:threshold': 0.5, 'unique:paramA': 0.3 },
+        });
+        const parentB = makeIndividual({
+            genome: { 'scoring:threshold': 0.7, 'unique:paramB': 0.6 },
+        });
+        const { child } = engine.crossover(parentA, parentB);
+        // Child should have the union of all keys
+        const keys = Object.keys(child);
+        expect(keys).toContain('scoring:threshold');
+        expect(keys).toContain('unique:paramA');
+        expect(keys).toContain('unique:paramB');
+    });
+    /* ---------- mutateGenome ---------- */
+    it('mutateGenome() with rate=0 produces no mutations', () => {
+        const genome = { 'scoring:threshold': 0.5, 'scoring:weight': 0.8, 'learning:rate': 0.01 };
+        const { genome: mutated, mutations } = engine.mutateGenome(genome, 0);
+        expect(mutations).toBe(0);
+        expect(mutated['scoring:threshold']).toBe(0.5);
+        expect(mutated['scoring:weight']).toBe(0.8);
+        expect(mutated['learning:rate']).toBe(0.01);
+    });
+    it('mutateGenome() with rate=1 mutates all genes (within bounds)', () => {
+        const genome = { 'scoring:threshold': 0.5, 'scoring:weight': 0.8, 'learning:rate': 0.01 };
+        // Run multiple times — with rate=1, all 3 genes should be mutated each time
+        let totalMutations = 0;
+        for (let i = 0; i < 20; i++) {
+            const { genome: mutated, mutations } = engine.mutateGenome(genome, 1.0);
+            totalMutations += mutations;
+            // Values must stay within registered bounds
+            expect(mutated['scoring:threshold']).toBeGreaterThanOrEqual(0);
+            expect(mutated['scoring:threshold']).toBeLessThanOrEqual(1);
+            expect(mutated['scoring:weight']).toBeGreaterThanOrEqual(0);
+            expect(mutated['scoring:weight']).toBeLessThanOrEqual(2);
+            expect(mutated['learning:rate']).toBeGreaterThanOrEqual(0.001);
+            expect(mutated['learning:rate']).toBeLessThanOrEqual(0.1);
+        }
+        // With rate=1.0, every call should mutate all 3 genes → 60 total
+        expect(totalMutations).toBe(60);
+    });
+    it('mutateGenome() does not mutate the original genome object', () => {
+        const genome = { 'scoring:threshold': 0.5, 'scoring:weight': 0.8 };
+        engine.mutateGenome(genome, 1.0);
+        // Original should be untouched
+        expect(genome['scoring:threshold']).toBe(0.5);
+        expect(genome['scoring:weight']).toBe(0.8);
+    });
+    /* ---------- runGeneration ---------- */
+    it('runGeneration() produces a new generation with correct stats', () => {
+        engine.setDataSources(makeMockDataSources());
+        engine.initializePopulation();
+        const gen = engine.runGeneration();
+        expect(gen.generation).toBe(1);
+        expect(gen.populationSize).toBe(5);
+        expect(gen.bestFitness).toBeGreaterThanOrEqual(0);
+        expect(gen.avgFitness).toBeGreaterThanOrEqual(0);
+        expect(gen.worstFitness).toBeGreaterThanOrEqual(0);
+        expect(gen.bestFitness).toBeGreaterThanOrEqual(gen.avgFitness);
+        expect(gen.avgFitness).toBeGreaterThanOrEqual(gen.worstFitness);
+        expect(gen.diversity).toBeGreaterThanOrEqual(0);
+        // Population for generation 1 should exist
+        const pop = engine.getPopulation(1);
+        expect(pop.length).toBe(5);
+        // Status should reflect the new generation
+        const status = engine.getStatus();
+        expect(status.currentGeneration).toBe(1);
+        expect(status.isInitialized).toBe(true);
+    });
+    it('runGeneration() applies best genome to parameter registry', () => {
+        engine.setDataSources(makeMockDataSources());
+        engine.initializePopulation();
+        const origThreshold = registry.get('scoring', 'threshold');
+        const origWeight = registry.get('scoring', 'weight');
+        const origRate = registry.get('learning', 'rate');
+        engine.runGeneration();
+        // At least one parameter should be potentially different
+        // (elites could keep original, but mutations change others)
+        const newThreshold = registry.get('scoring', 'threshold');
+        const newWeight = registry.get('scoring', 'weight');
+        const newRate = registry.get('learning', 'rate');
+        // Values must remain within bounds regardless
+        expect(newThreshold).toBeGreaterThanOrEqual(0);
+        expect(newThreshold).toBeLessThanOrEqual(1);
+        expect(newWeight).toBeGreaterThanOrEqual(0);
+        expect(newWeight).toBeLessThanOrEqual(2);
+        expect(newRate).toBeGreaterThanOrEqual(0.001);
+        expect(newRate).toBeLessThanOrEqual(0.1);
+    });
+    it('runGeneration() records lineage for offspring', () => {
+        engine.setDataSources(makeMockDataSources());
+        engine.initializePopulation();
+        engine.runGeneration();
+        // Check that lineage records exist
+        const lineageRows = db.prepare('SELECT COUNT(*) AS cnt FROM evolution_lineage').get();
+        expect(lineageRows.cnt).toBeGreaterThan(0);
+    });
+    it('runGeneration() can run multiple generations consecutively', () => {
+        engine.setDataSources(makeMockDataSources());
+        engine.initializePopulation();
+        engine.runGeneration();
+        engine.runGeneration();
+        const gen3 = engine.runGeneration();
+        expect(gen3.generation).toBe(3);
+        const status = engine.getStatus();
+        expect(status.currentGeneration).toBe(3);
+        // Total individuals should be gen0 (5) + gen1 (5) + gen2 (5) + gen3 (5)
+        expect(status.totalIndividuals).toBe(20);
+    });
+    /* ---------- getHistory ---------- */
+    it('getHistory() returns generation records in descending order', () => {
+        engine.setDataSources(makeMockDataSources());
+        engine.initializePopulation();
+        engine.runGeneration();
+        engine.runGeneration();
+        engine.runGeneration();
+        const history = engine.getHistory();
+        expect(history.length).toBe(3);
+        // Descending order by generation number
+        expect(history[0].generation).toBe(3);
+        expect(history[1].generation).toBe(2);
+        expect(history[2].generation).toBe(1);
+        for (const gen of history) {
+            expect(gen.populationSize).toBe(5);
+            expect(gen.bestFitness).toBeGreaterThanOrEqual(0);
+            expect(gen.diversity).toBeGreaterThanOrEqual(0);
+        }
+    });
+    it('getHistory() returns empty array when no generations have run', () => {
+        const history = engine.getHistory();
+        expect(history).toEqual([]);
+    });
+    it('getHistory() respects the limit parameter', () => {
+        engine.setDataSources(makeMockDataSources());
+        engine.initializePopulation();
+        engine.runGeneration();
+        engine.runGeneration();
+        engine.runGeneration();
+        const limited = engine.getHistory(2);
+        expect(limited.length).toBe(2);
+        expect(limited[0].generation).toBe(3);
+        expect(limited[1].generation).toBe(2);
+    });
+    /* ---------- getBestIndividual ---------- */
+    it('getBestIndividual() returns null when no individuals exist', () => {
+        const best = engine.getBestIndividual();
+        expect(best).toBeNull();
+    });
+    it('getBestIndividual() returns the highest-fitness individual', () => {
+        engine.setDataSources(makeMockDataSources());
+        engine.initializePopulation();
+        engine.runGeneration();
+        const best = engine.getBestIndividual();
+        expect(best).not.toBeNull();
+        expect(best.id).toBeDefined();
+        expect(best.genome).toBeDefined();
+        expect(Object.keys(best.genome).length).toBeGreaterThan(0);
+        expect(best.fitness).toBeGreaterThanOrEqual(0);
+        // Verify it is truly the highest-fitness individual
+        const allRows = db.prepare('SELECT fitness FROM evolution_individuals ORDER BY fitness DESC').all();
+        expect(best.fitness).toBe(allRows[0].fitness);
+    });
+    /* ---------- getPopulation ---------- */
+    it('getPopulation() returns individuals for the specified generation', () => {
+        engine.initializePopulation();
+        const pop0 = engine.getPopulation(0);
+        expect(pop0.length).toBe(5);
+        for (const ind of pop0) {
+            expect(ind.generation).toBe(0);
+            expect(ind.genome).toBeDefined();
+            expect(typeof ind.fitness).toBe('number');
+            expect(typeof ind.isActive).toBe('boolean');
+        }
+    });
+    it('getPopulation() defaults to current generation', () => {
+        engine.setDataSources(makeMockDataSources());
+        engine.initializePopulation();
+        engine.runGeneration();
+        const pop = engine.getPopulation();
+        expect(pop.length).toBe(5);
+        for (const ind of pop) {
+            expect(ind.generation).toBe(1);
+        }
+    });
+    it('getPopulation() returns empty array for non-existent generation', () => {
+        const pop = engine.getPopulation(999);
+        expect(pop).toEqual([]);
+    });
+    /* ---------- getLineage ---------- */
+    it('getLineage() returns parent records for a child individual', () => {
+        engine.setDataSources(makeMockDataSources());
+        engine.initializePopulation();
+        engine.runGeneration();
+        // Find an individual with parents (non-elite offspring from gen 1)
+        const offspring = db.prepare('SELECT id FROM evolution_individuals WHERE generation = 1 AND parent_b_id IS NOT NULL LIMIT 1').get();
+        if (offspring) {
+            const lineage = engine.getLineage(offspring.id);
+            expect(lineage.length).toBeGreaterThanOrEqual(1);
+            for (const entry of lineage) {
+                expect(entry.childId).toBe(offspring.id);
+                expect(entry.parentId).toBeGreaterThan(0);
+                expect(typeof entry.crossoverPoint).toBe('string');
+            }
+        }
+    });
+    /* ---------- activate ---------- */
+    it('activate() applies genome values to the parameter registry', () => {
+        const genome = {
+            'scoring:threshold': 0.75,
+            'scoring:weight': 1.5,
+            'learning:rate': 0.05,
+        };
+        engine.activate(genome);
+        expect(registry.get('scoring', 'threshold')).toBe(0.75);
+        expect(registry.get('scoring', 'weight')).toBe(1.5);
+        expect(registry.get('learning', 'rate')).toBe(0.05);
+    });
+    /* ---------- config defaults ---------- */
+    it('uses default config values when not specified', () => {
+        const minimalEngine = new EvolutionEngine(db, registry, { brainName: 'minimal' });
+        const status = minimalEngine.getStatus();
+        expect(status.config.populationSize).toBe(15);
+        expect(status.config.mutationRate).toBe(0.15);
+        expect(status.config.eliteCount).toBe(2);
+        expect(status.config.tournamentSize).toBe(3);
+        expect(status.config.generationEvery).toBe(20);
+    });
+});
+//# sourceMappingURL=evolution-engine.test.js.map

package/dist/metacognition/__tests__/evolution-engine.test.js.map

@@ -0,0 +1 @@
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package/dist/metacognition/__tests__/parameter-registry.test.d.ts

@@ -0,0 +1 @@
+export {};