@timmeck/brain-core 2.36.24 → 2.36.25

package/dist/rag/rag-engine.d.ts

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+import type Database from 'better-sqlite3';
+import type { ThoughtStream } from '../consciousness/thought-stream.js';
+import type { BaseEmbeddingEngine } from '../embeddings/engine.js';
+import type { LLMService } from '../llm/llm-service.js';
+export interface RAGEngineConfig {
+    brainName: string;
+    /** Default similarity threshold for search (0-1). Default: 0.3 */
+    defaultThreshold?: number;
+    /** Default max results. Default: 10 */
+    defaultLimit?: number;
+    /** Max batch size for indexing. Default: 50 */
+    batchSize?: number;
+}
+export interface RAGSearchOptions {
+    /** Filter by collections */
+    collections?: string[];
+    /** Max results */
+    limit?: number;
+    /** Minimum similarity threshold */
+    threshold?: number;
+    /** Enable LLM-based reranking */
+    rerank?: boolean;
+}
+export interface RAGResult {
+    collection: string;
+    sourceId: number;
+    text: string;
+    similarity: number;
+    metadata?: Record<string, unknown>;
+}
+export interface RAGIndexStats {
+    collection: string;
+    count: number;
+}
+export interface RAGStatus {
+    totalVectors: number;
+    collections: RAGIndexStats[];
+    lastIndexedAt: string | null;
+}
+export declare function runRAGMigration(db: Database.Database): void;
+export declare class RAGEngine {
+    private readonly db;
+    private readonly config;
+    private readonly log;
+    private ts;
+    private embedding;
+    private llm;
+    private readonly stmtUpsert;
+    private readonly stmtSearch;
+    private readonly stmtSearchAll;
+    private readonly stmtGetByHash;
+    private readonly stmtDelete;
+    private readonly stmtStats;
+    private readonly stmtTotal;
+    private readonly stmtLastIndexed;
+    private readonly stmtGetCollections;
+    constructor(db: Database.Database, config: RAGEngineConfig);
+    setThoughtStream(stream: ThoughtStream): void;
+    setEmbeddingEngine(engine: BaseEmbeddingEngine): void;
+    setLLMService(llm: LLMService): void;
+    /**
+     * Index a single item into the RAG store.
+     */
+    index(collection: string, sourceId: number, text: string, metadata?: Record<string, unknown>): Promise<boolean>;
+    /**
+     * Batch index multiple items. Returns count of newly indexed items.
+     */
+    indexBatch(items: Array<{
+        collection: string;
+        sourceId: number;
+        text: string;
+        metadata?: Record<string, unknown>;
+    }>): Promise<number>;
+    /**
+     * Search the RAG store for similar content.
+     */
+    search(query: string, options?: RAGSearchOptions): Promise<RAGResult[]>;
+    /**
+     * LLM-based reranking of search results.
+     */
+    rerank(query: string, results: RAGResult[]): Promise<RAGResult[]>;
+    /**
+     * Format search results as context for an LLM prompt.
+     */
+    augment(query: string, context: RAGResult[]): string;
+    /**
+     * Remove an item from the RAG store.
+     */
+    remove(collection: string, sourceId: number): void;
+    /**
+     * Get RAG engine status.
+     */
+    getStatus(): RAGStatus;
+    /**
+     * Get list of all collections.
+     */
+    getCollections(): string[];
+}

package/dist/rag/rag-engine.js

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+import { getLogger } from '../utils/logger.js';
+// ── Migration ────────────────────────────────────────────────
+export function runRAGMigration(db) {
+    db.exec(`
+    CREATE TABLE IF NOT EXISTS rag_vectors (
+      id INTEGER PRIMARY KEY AUTOINCREMENT,
+      collection TEXT NOT NULL,
+      source_id INTEGER NOT NULL,
+      text_hash TEXT NOT NULL,
+      text_preview TEXT,
+      embedding BLOB NOT NULL,
+      metadata TEXT,
+      created_at TEXT DEFAULT (datetime('now')),
+      UNIQUE(collection, source_id)
+    );
+    CREATE INDEX IF NOT EXISTS idx_rag_collection ON rag_vectors(collection);
+    CREATE INDEX IF NOT EXISTS idx_rag_text_hash ON rag_vectors(text_hash);
+  `);
+}
+// ── Engine ───────────────────────────────────────────────────
+export class RAGEngine {
+    db;
+    config;
+    log = getLogger();
+    ts = null;
+    embedding = null;
+    llm = null;
+    // Prepared statements
+    stmtUpsert;
+    stmtSearch;
+    stmtSearchAll;
+    stmtGetByHash;
+    stmtDelete;
+    stmtStats;
+    stmtTotal;
+    stmtLastIndexed;
+    stmtGetCollections;
+    constructor(db, config) {
+        this.db = db;
+        this.config = {
+            brainName: config.brainName,
+            defaultThreshold: config.defaultThreshold ?? 0.3,
+            defaultLimit: config.defaultLimit ?? 10,
+            batchSize: config.batchSize ?? 50,
+        };
+        runRAGMigration(db);
+        this.stmtUpsert = db.prepare(`
+      INSERT INTO rag_vectors (collection, source_id, text_hash, text_preview, embedding, metadata)
+      VALUES (?, ?, ?, ?, ?, ?)
+      ON CONFLICT(collection, source_id) DO UPDATE SET
+        text_hash = excluded.text_hash,
+        text_preview = excluded.text_preview,
+        embedding = excluded.embedding,
+        metadata = excluded.metadata,
+        created_at = datetime('now')
+    `);
+        this.stmtSearch = db.prepare(`
+      SELECT id, collection, source_id, text_preview, embedding, metadata, created_at
+      FROM rag_vectors WHERE collection = ?
+    `);
+        this.stmtSearchAll = db.prepare(`
+      SELECT id, collection, source_id, text_preview, embedding, metadata, created_at
+      FROM rag_vectors
+    `);
+        this.stmtGetByHash = db.prepare(`
+      SELECT id FROM rag_vectors WHERE collection = ? AND source_id = ? AND text_hash = ?
+    `);
+        this.stmtDelete = db.prepare(`DELETE FROM rag_vectors WHERE collection = ? AND source_id = ?`);
+        this.stmtStats = db.prepare(`
+      SELECT collection, COUNT(*) as count FROM rag_vectors GROUP BY collection
+    `);
+        this.stmtTotal = db.prepare(`SELECT COUNT(*) as total FROM rag_vectors`);
+        this.stmtLastIndexed = db.prepare(`
+      SELECT MAX(created_at) as last_indexed FROM rag_vectors
+    `);
+        this.stmtGetCollections = db.prepare(`SELECT DISTINCT collection FROM rag_vectors`);
+    }
+    setThoughtStream(stream) { this.ts = stream; }
+    setEmbeddingEngine(engine) { this.embedding = engine; }
+    setLLMService(llm) { this.llm = llm; }
+    /**
+     * Index a single item into the RAG store.
+     */
+    async index(collection, sourceId, text, metadata) {
+        if (!this.embedding) {
+            this.log.warn('[RAG] No embedding engine available, skipping index');
+            return false;
+        }
+        const textHash = simpleHash(text);
+        // Skip if text hasn't changed
+        const existing = this.stmtGetByHash.get(collection, sourceId, textHash);
+        if (existing)
+            return false;
+        try {
+            const vector = await this.embedding.embed(text);
+            const blob = serializeEmbedding(vector);
+            const preview = text.slice(0, 200);
+            const meta = metadata ? JSON.stringify(metadata) : null;
+            this.stmtUpsert.run(collection, sourceId, textHash, preview, blob, meta);
+            return true;
+        }
+        catch (err) {
+            this.log.error(`[RAG] Failed to index ${collection}:${sourceId}: ${err.message}`);
+            return false;
+        }
+    }
+    /**
+     * Batch index multiple items. Returns count of newly indexed items.
+     */
+    async indexBatch(items) {
+        if (!this.embedding)
+            return 0;
+        this.ts?.emit('rag', 'analyzing', `Batch indexing ${items.length} items`, 'routine');
+        let indexed = 0;
+        const batchSize = this.config.batchSize;
+        for (let i = 0; i < items.length; i += batchSize) {
+            const batch = items.slice(i, i + batchSize);
+            // Filter out unchanged items
+            const toIndex = batch.filter(item => {
+                const hash = simpleHash(item.text);
+                const existing = this.stmtGetByHash.get(item.collection, item.sourceId, hash);
+                return !existing;
+            });
+            if (toIndex.length === 0)
+                continue;
+            // Compute embeddings in batch
+            const texts = toIndex.map(item => item.text);
+            const embeddings = await this.embedding.embedBatch(texts);
+            const insertMany = this.db.transaction(() => {
+                for (let j = 0; j < toIndex.length; j++) {
+                    const item = toIndex[j];
+                    const vector = embeddings[j];
+                    if (!vector)
+                        continue;
+                    const blob = serializeEmbedding(vector);
+                    const preview = item.text.slice(0, 200);
+                    const meta = item.metadata ? JSON.stringify(item.metadata) : null;
+                    const hash = simpleHash(item.text);
+                    this.stmtUpsert.run(item.collection, item.sourceId, hash, preview, blob, meta);
+                    indexed++;
+                }
+            });
+            insertMany();
+        }
+        if (indexed > 0) {
+            this.ts?.emit('rag', 'discovering', `Indexed ${indexed} new vectors`, 'notable');
+        }
+        return indexed;
+    }
+    /**
+     * Search the RAG store for similar content.
+     */
+    async search(query, options) {
+        if (!this.embedding)
+            return [];
+        const limit = options?.limit ?? this.config.defaultLimit;
+        const threshold = options?.threshold ?? this.config.defaultThreshold;
+        const collections = options?.collections;
+        this.ts?.emit('rag', 'analyzing', `Searching RAG: "${query.slice(0, 50)}..."`, 'routine');
+        let queryVector;
+        try {
+            queryVector = await this.embedding.embed(query);
+        }
+        catch {
+            return [];
+        }
+        // Get candidates from DB
+        let rows;
+        if (collections && collections.length > 0) {
+            // Search specific collections
+            const allRows = [];
+            for (const col of collections) {
+                const colRows = this.stmtSearch.all(col);
+                allRows.push(...colRows);
+            }
+            rows = allRows;
+        }
+        else {
+            rows = this.stmtSearchAll.all();
+        }
+        // Compute similarities
+        const results = [];
+        for (const row of rows) {
+            const storedVector = deserializeEmbedding(row.embedding);
+            const sim = cosineSimilarity(queryVector, storedVector);
+            if (sim >= threshold) {
+                results.push({
+                    collection: row.collection,
+                    sourceId: row.source_id,
+                    text: row.text_preview ?? '',
+                    similarity: Math.round(sim * 1000) / 1000,
+                    metadata: row.metadata ? JSON.parse(row.metadata) : undefined,
+                });
+            }
+        }
+        // Sort by similarity descending
+        results.sort((a, b) => b.similarity - a.similarity);
+        // Take top-K
+        const topK = results.slice(0, limit);
+        // Optional reranking via LLM
+        if (options?.rerank && this.llm && topK.length > 1) {
+            return this.rerank(query, topK);
+        }
+        return topK;
+    }
+    /**
+     * LLM-based reranking of search results.
+     */
+    async rerank(query, results) {
+        if (!this.llm || results.length <= 1)
+            return results;
+        try {
+            const numbered = results.map((r, i) => `[${i + 1}] ${r.text}`).join('\n');
+            const prompt = `Given the query: "${query}"\n\nRank these results by relevance (most relevant first). Return ONLY the numbers in order, comma-separated:\n\n${numbered}`;
+            const response = await this.llm.call('custom', prompt, { maxTokens: 100 });
+            if (!response)
+                return results;
+            // Parse the ranking
+            const rankOrder = response.text
+                .replace(/[^0-9,]/g, '')
+                .split(',')
+                .map((n) => parseInt(n.trim(), 10) - 1)
+                .filter((n) => n >= 0 && n < results.length);
+            if (rankOrder.length === 0)
+                return results;
+            // Reorder results
+            const reranked = [];
+            const used = new Set();
+            for (const idx of rankOrder) {
+                if (!used.has(idx)) {
+                    reranked.push(results[idx]);
+                    used.add(idx);
+                }
+            }
+            // Append any missed results
+            for (let i = 0; i < results.length; i++) {
+                if (!used.has(i))
+                    reranked.push(results[i]);
+            }
+            return reranked;
+        }
+        catch {
+            return results; // Graceful fallback
+        }
+    }
+    /**
+     * Format search results as context for an LLM prompt.
+     */
+    augment(query, context) {
+        if (context.length === 0)
+            return query;
+        const contextBlock = context
+            .map((r, i) => `[${i + 1}] (${r.collection}, sim=${r.similarity}) ${r.text}`)
+            .join('\n');
+        return `Context from knowledge base:\n${contextBlock}\n\nQuery: ${query}`;
+    }
+    /**
+     * Remove an item from the RAG store.
+     */
+    remove(collection, sourceId) {
+        this.stmtDelete.run(collection, sourceId);
+    }
+    /**
+     * Get RAG engine status.
+     */
+    getStatus() {
+        const total = this.stmtTotal.get().total;
+        const collections = this.stmtStats.all();
+        const lastRow = this.stmtLastIndexed.get();
+        return {
+            totalVectors: total,
+            collections,
+            lastIndexedAt: lastRow.last_indexed,
+        };
+    }
+    /**
+     * Get list of all collections.
+     */
+    getCollections() {
+        const rows = this.stmtGetCollections.all();
+        return rows.map(r => r.collection);
+    }
+}
+// ── Helpers ──────────────────────────────────────────────────
+function simpleHash(text) {
+    let hash = 0;
+    for (let i = 0; i < text.length; i++) {
+        const char = text.charCodeAt(i);
+        hash = ((hash << 5) - hash) + char;
+        hash = hash & hash; // Convert to 32bit integer
+    }
+    return hash.toString(36);
+}
+function serializeEmbedding(embedding) {
+    return Buffer.from(embedding.buffer, embedding.byteOffset, embedding.byteLength);
+}
+function deserializeEmbedding(buffer) {
+    const copy = Buffer.from(buffer);
+    return new Float32Array(copy.buffer, copy.byteOffset, copy.length / 4);
+}
+function cosineSimilarity(a, b) {
+    if (a.length !== b.length)
+        return 0;
+    let dot = 0;
+    for (let i = 0; i < a.length; i++) {
+        dot += a[i] * b[i];
+    }
+    return Math.max(0, Math.min(1, dot));
+}
+//# sourceMappingURL=rag-engine.js.map

package/dist/rag/rag-engine.js.map

@@ -0,0 +1 @@
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package/dist/rag/rag-indexer.d.ts

@@ -0,0 +1,52 @@
+import type Database from 'better-sqlite3';
+import type { RAGEngine } from './rag-engine.js';
+export interface RAGIndexerConfig {
+    /** Collections to auto-index. Default: all known collections */
+    collections?: string[];
+    /** Batch size for indexing. Default: 50 */
+    batchSize?: number;
+}
+export interface IndexSource {
+    collection: string;
+    query: string;
+    textColumns: string[];
+    idColumn?: string;
+    timestampColumn?: string;
+}
+export interface IndexerStatus {
+    lastRun: string | null;
+    totalIndexed: number;
+    sources: Array<{
+        collection: string;
+        count: number;
+    }>;
+}
+export declare class RAGIndexer {
+    private readonly db;
+    private readonly config;
+    private readonly log;
+    private rag;
+    private lastRun;
+    private totalIndexed;
+    private sourceCounts;
+    private customSources;
+    constructor(db: Database.Database, config?: RAGIndexerConfig);
+    setRAGEngine(rag: RAGEngine): void;
+    /**
+     * Register a custom index source (for brain-specific tables).
+     */
+    addSource(source: IndexSource): void;
+    /**
+     * Run full indexing over all available sources.
+     * Only indexes tables that actually exist in the database.
+     */
+    indexAll(): Promise<number>;
+    /**
+     * Index a single source.
+     */
+    private indexSource;
+    /**
+     * Get indexer status.
+     */
+    getStatus(): IndexerStatus;
+}

package/dist/rag/rag-indexer.js

@@ -0,0 +1,144 @@
+import { getLogger } from '../utils/logger.js';
+// ── Default Sources ──────────────────────────────────────────
+const DEFAULT_SOURCES = [
+    {
+        collection: 'insights',
+        query: `SELECT id, content, category, created_at FROM research_insights WHERE content IS NOT NULL`,
+        textColumns: ['content'],
+        timestampColumn: 'created_at',
+    },
+    {
+        collection: 'memories',
+        query: `SELECT id, key, content, category FROM memories WHERE content IS NOT NULL`,
+        textColumns: ['key', 'content'],
+        timestampColumn: undefined,
+    },
+    {
+        collection: 'principles',
+        query: `SELECT id, name, description, evidence_count FROM distilled_principles WHERE description IS NOT NULL`,
+        textColumns: ['name', 'description'],
+        timestampColumn: undefined,
+    },
+    {
+        collection: 'errors',
+        query: `SELECT id, error_type, message, context FROM errors WHERE message IS NOT NULL`,
+        textColumns: ['error_type', 'message'],
+        timestampColumn: undefined,
+    },
+    {
+        collection: 'solutions',
+        query: `SELECT id, description, steps, context FROM solutions WHERE description IS NOT NULL`,
+        textColumns: ['description', 'steps'],
+        timestampColumn: undefined,
+    },
+    {
+        collection: 'rules',
+        query: `SELECT id, condition_pattern, action, domain FROM rules WHERE condition_pattern IS NOT NULL`,
+        textColumns: ['condition_pattern', 'action'],
+        timestampColumn: undefined,
+    },
+];
+// ── Indexer ──────────────────────────────────────────────────
+export class RAGIndexer {
+    db;
+    config;
+    log = getLogger();
+    rag = null;
+    lastRun = null;
+    totalIndexed = 0;
+    sourceCounts = new Map();
+    customSources = [];
+    constructor(db, config) {
+        this.db = db;
+        this.config = {
+            collections: config?.collections ?? [],
+            batchSize: config?.batchSize ?? 50,
+        };
+    }
+    setRAGEngine(rag) { this.rag = rag; }
+    /**
+     * Register a custom index source (for brain-specific tables).
+     */
+    addSource(source) {
+        this.customSources.push(source);
+    }
+    /**
+     * Run full indexing over all available sources.
+     * Only indexes tables that actually exist in the database.
+     */
+    async indexAll() {
+        if (!this.rag) {
+            this.log.warn('[RAGIndexer] No RAG engine set, skipping');
+            return 0;
+        }
+        const allSources = [...DEFAULT_SOURCES, ...this.customSources];
+        const filteredSources = this.config.collections.length > 0
+            ? allSources.filter(s => this.config.collections.includes(s.collection))
+            : allSources;
+        let totalNew = 0;
+        for (const source of filteredSources) {
+            try {
+                const count = await this.indexSource(source);
+                totalNew += count;
+                this.sourceCounts.set(source.collection, (this.sourceCounts.get(source.collection) ?? 0) + count);
+            }
+            catch (err) {
+                // Table might not exist in this brain — skip gracefully
+                const msg = err.message;
+                if (msg.includes('no such table') || msg.includes('no such column')) {
+                    this.log.debug(`[RAGIndexer] Skipping ${source.collection}: table not found`);
+                }
+                else {
+                    this.log.error(`[RAGIndexer] Error indexing ${source.collection}: ${msg}`);
+                }
+            }
+        }
+        this.lastRun = new Date().toISOString();
+        this.totalIndexed += totalNew;
+        if (totalNew > 0) {
+            this.log.info(`[RAGIndexer] Indexed ${totalNew} new items across ${filteredSources.length} sources`);
+        }
+        return totalNew;
+    }
+    /**
+     * Index a single source.
+     */
+    async indexSource(source) {
+        if (!this.rag)
+            return 0;
+        const rows = this.db.prepare(source.query).all();
+        if (rows.length === 0)
+            return 0;
+        const items = rows.map(row => {
+            const id = row[source.idColumn ?? 'id'];
+            const text = source.textColumns
+                .map(col => row[col] ?? '')
+                .filter(Boolean)
+                .join(' | ');
+            // Build metadata from all non-text, non-id columns
+            const metadata = {};
+            for (const [key, value] of Object.entries(row)) {
+                if (key !== (source.idColumn ?? 'id') && !source.textColumns.includes(key) && value != null) {
+                    metadata[key] = value;
+                }
+            }
+            return { collection: source.collection, sourceId: id, text, metadata };
+        });
+        return this.rag.indexBatch(items);
+    }
+    /**
+     * Get indexer status.
+     */
+    getStatus() {
+        const sources = [];
+        for (const [collection, count] of this.sourceCounts) {
+            sources.push({ collection, count });
+        }
+        return {
+            lastRun: this.lastRun,
+            totalIndexed: this.totalIndexed,
+            sources,
+        };
+    }
+}
+//# sourceMappingURL=rag-indexer.js.map

package/dist/rag/rag-indexer.js.map

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package/dist/research/__tests__/semantic-compressor.test.d.ts

@@ -0,0 +1 @@
+export {};