@timmeck/brain-core 2.28.1 → 2.29.1

package/dist/metacognition/evolution-engine.js

@@ -0,0 +1,450 @@
+// ── Migration ───────────────────────────────────────────
+export function runEvolutionMigration(db) {
+    db.exec(`
+    CREATE TABLE IF NOT EXISTS evolution_generations (
+      id INTEGER PRIMARY KEY AUTOINCREMENT,
+      generation INTEGER NOT NULL,
+      best_fitness REAL NOT NULL DEFAULT 0,
+      avg_fitness REAL NOT NULL DEFAULT 0,
+      worst_fitness REAL NOT NULL DEFAULT 0,
+      population_size INTEGER NOT NULL DEFAULT 0,
+      diversity REAL NOT NULL DEFAULT 0,
+      timestamp TEXT NOT NULL DEFAULT (datetime('now'))
+    );
+
+    CREATE TABLE IF NOT EXISTS evolution_individuals (
+      id INTEGER PRIMARY KEY AUTOINCREMENT,
+      generation INTEGER NOT NULL,
+      genome_json TEXT NOT NULL,
+      fitness REAL NOT NULL DEFAULT 0,
+      rank INTEGER NOT NULL DEFAULT 0,
+      is_active INTEGER NOT NULL DEFAULT 0,
+      parent_a_id INTEGER,
+      parent_b_id INTEGER,
+      mutation_count INTEGER NOT NULL DEFAULT 0,
+      created_at TEXT NOT NULL DEFAULT (datetime('now'))
+    );
+
+    CREATE TABLE IF NOT EXISTS evolution_lineage (
+      id INTEGER PRIMARY KEY AUTOINCREMENT,
+      child_id INTEGER NOT NULL,
+      parent_id INTEGER NOT NULL,
+      crossover_point TEXT NOT NULL DEFAULT '',
+      created_at TEXT NOT NULL DEFAULT (datetime('now'))
+    );
+  `);
+}
+// ── Engine ──────────────────────────────────────────────
+export class EvolutionEngine {
+    db;
+    registry;
+    brainName;
+    populationSize;
+    mutationRate;
+    eliteCount;
+    tournamentSize;
+    generationEvery;
+    thoughtStream = null;
+    dataSources = null;
+    currentGeneration = 0;
+    constructor(db, registry, config) {
+        this.db = db;
+        this.registry = registry;
+        this.brainName = config.brainName;
+        this.populationSize = config.populationSize ?? 15;
+        this.mutationRate = config.mutationRate ?? 0.15;
+        this.eliteCount = config.eliteCount ?? 2;
+        this.tournamentSize = config.tournamentSize ?? 3;
+        this.generationEvery = config.generationEvery ?? 20;
+        runEvolutionMigration(db);
+        // Restore generation counter from DB
+        const row = db.prepare('SELECT MAX(generation) AS gen FROM evolution_generations').get();
+        if (row?.gen)
+            this.currentGeneration = row.gen;
+    }
+    setThoughtStream(stream) {
+        this.thoughtStream = stream;
+    }
+    setDataSources(sources) {
+        this.dataSources = sources;
+    }
+    // ── Population Initialization ─────────────────────────
+    initializePopulation() {
+        // Idempotent — skip if we already have individuals
+        const existing = this.db.prepare('SELECT COUNT(*) AS cnt FROM evolution_individuals').get();
+        if (existing.cnt > 0)
+            return;
+        const currentGenome = this.getCurrentGenome();
+        if (Object.keys(currentGenome).length === 0)
+            return;
+        // Individual 0: current parameter configuration
+        this.insertIndividual(0, currentGenome, 0, null, null, 0, true);
+        // Remaining: random variants around current genome
+        for (let i = 1; i < this.populationSize; i++) {
+            const variant = this.randomVariant(currentGenome);
+            this.insertIndividual(0, variant.genome, 0, null, null, variant.mutations, false);
+        }
+    }
+    // ── Fitness Evaluation ────────────────────────────────
+    evaluateFitness(individual) {
+        // Apply this individual's genome temporarily — we just score it
+        // Fitness = weighted combination of data source metrics
+        if (!this.dataSources)
+            return 0;
+        let metaCogScore = 0;
+        try {
+            const cards = this.dataSources.getReportCards();
+            if (cards.length > 0) {
+                metaCogScore = cards.reduce((sum, c) => sum + c.combined_score, 0) / cards.length;
+            }
+        }
+        catch { /* empty */ }
+        let goalProgress = 0;
+        try {
+            goalProgress = this.dataSources.getGoalProgress();
+        }
+        catch { /* empty */ }
+        let predAccuracy = 0;
+        try {
+            predAccuracy = this.dataSources.getPredictionAccuracy();
+        }
+        catch { /* empty */ }
+        let knowledgeQuality = 0;
+        try {
+            const principles = this.dataSources.getPrincipleCount();
+            const hypotheses = this.dataSources.getHypothesisCount();
+            knowledgeQuality = Math.min(1, (principles + hypotheses) / 100);
+        }
+        catch { /* empty */ }
+        const novelty = this.computeNovelty(individual.genome);
+        const fitness = metaCogScore * 0.4
+            + goalProgress * 0.2
+            + predAccuracy * 0.2
+            + knowledgeQuality * 0.1
+            + novelty * 0.1;
+        return Math.max(0, Math.min(1, fitness));
+    }
+    // ── Run a Generation ──────────────────────────────────
+    runGeneration() {
+        this.currentGeneration++;
+        const ts = this.thoughtStream;
+        ts?.emit('evolution', 'reflecting', `Running Evolution Generation #${this.currentGeneration}...`, 'notable');
+        // 1. Get current population (or initialize if empty)
+        let population = this.getPopulationInternal(this.currentGeneration - 1);
+        if (population.length === 0) {
+            // Re-initialize if somehow empty
+            this.initializePopulation();
+            population = this.getPopulationInternal(0);
+        }
+        // 2. Evaluate fitness for each individual
+        for (const ind of population) {
+            ind.fitness = this.evaluateFitness(ind);
+        }
+        // 3. Sort by fitness descending
+        population.sort((a, b) => b.fitness - a.fitness);
+        for (let i = 0; i < population.length; i++) {
+            population[i].rank = i + 1;
+        }
+        // 4. Build next generation
+        const nextPop = [];
+        // 4a. Elitism — carry top N unchanged
+        for (let i = 0; i < Math.min(this.eliteCount, population.length); i++) {
+            const elite = population[i];
+            nextPop.push({
+                generation: this.currentGeneration,
+                genome: { ...elite.genome },
+                fitness: elite.fitness,
+                rank: 0,
+                isActive: false,
+                parentAId: elite.id ?? null,
+                parentBId: null,
+                mutationCount: 0,
+            });
+        }
+        // 4b. Fill rest via tournament selection + crossover + mutation
+        while (nextPop.length < this.populationSize) {
+            const parentA = this.tournamentSelect(population, this.tournamentSize);
+            const parentB = this.tournamentSelect(population, this.tournamentSize);
+            const { child, crossoverPoints } = this.crossover(parentA, parentB);
+            const { genome: mutated, mutations } = this.mutateGenome(child, this.mutationRate);
+            nextPop.push({
+                generation: this.currentGeneration,
+                genome: mutated,
+                fitness: 0,
+                rank: 0,
+                isActive: false,
+                parentAId: parentA.id ?? null,
+                parentBId: parentB.id ?? null,
+                mutationCount: mutations,
+                _crossoverPoints: crossoverPoints,
+            });
+        }
+        // 5. Deactivate all previous individuals
+        this.db.prepare('UPDATE evolution_individuals SET is_active = 0').run();
+        // 6. Insert new population and record lineage
+        for (const ind of nextPop) {
+            const id = this.insertIndividual(ind.generation, ind.genome, ind.fitness, ind.parentAId, ind.parentBId, ind.mutationCount, false);
+            // Record lineage
+            const points = ind._crossoverPoints;
+            if (ind.parentAId) {
+                this.db.prepare('INSERT INTO evolution_lineage (child_id, parent_id, crossover_point) VALUES (?, ?, ?)').run(id, ind.parentAId, points?.join(',') ?? 'elite');
+            }
+            if (ind.parentBId) {
+                this.db.prepare('INSERT INTO evolution_lineage (child_id, parent_id, crossover_point) VALUES (?, ?, ?)').run(id, ind.parentBId, points?.join(',') ?? 'crossover');
+            }
+        }
+        // 7. Activate best individual (apply its genome to registry)
+        const best = nextPop[0]; // Elites are first
+        this.activate(best.genome);
+        // Mark as active in DB
+        const bestRow = this.db.prepare('SELECT id FROM evolution_individuals WHERE generation = ? ORDER BY fitness DESC LIMIT 1').get(this.currentGeneration);
+        if (bestRow) {
+            this.db.prepare('UPDATE evolution_individuals SET is_active = 1 WHERE id = ?').run(bestRow.id);
+        }
+        // 8. Record generation stats
+        const fitnesses = population.map(p => p.fitness);
+        const avgFitness = fitnesses.length > 0 ? fitnesses.reduce((a, b) => a + b, 0) / fitnesses.length : 0;
+        const bestFitness = fitnesses.length > 0 ? Math.max(...fitnesses) : 0;
+        const worstFitness = fitnesses.length > 0 ? Math.min(...fitnesses) : 0;
+        const diversity = this.computeDiversity(nextPop.map(i => i.genome));
+        this.db.prepare(`
+      INSERT INTO evolution_generations (generation, best_fitness, avg_fitness, worst_fitness, population_size, diversity)
+      VALUES (?, ?, ?, ?, ?, ?)
+    `).run(this.currentGeneration, bestFitness, avgFitness, worstFitness, nextPop.length, diversity);
+        const gen = {
+            generation: this.currentGeneration,
+            bestFitness,
+            avgFitness,
+            worstFitness,
+            populationSize: nextPop.length,
+            diversity,
+        };
+        ts?.emit('evolution', 'reflecting', `Generation #${this.currentGeneration}: best=${bestFitness.toFixed(3)} avg=${avgFitness.toFixed(3)} diversity=${diversity.toFixed(3)}`, bestFitness > avgFitness * 1.2 ? 'notable' : 'routine');
+        return gen;
+    }
+    // ── Selection ─────────────────────────────────────────
+    tournamentSelect(population, size) {
+        const contestants = [];
+        for (let i = 0; i < Math.min(size, population.length); i++) {
+            const idx = Math.floor(Math.random() * population.length);
+            contestants.push(population[idx]);
+        }
+        contestants.sort((a, b) => b.fitness - a.fitness);
+        return contestants[0];
+    }
+    // ── Crossover ─────────────────────────────────────────
+    crossover(parentA, parentB) {
+        const child = {};
+        const crossoverPoints = [];
+        const keys = new Set([...Object.keys(parentA.genome), ...Object.keys(parentB.genome)]);
+        for (const key of keys) {
+            const fromA = Math.random() < 0.5;
+            if (fromA && key in parentA.genome) {
+                child[key] = parentA.genome[key];
+            }
+            else if (key in parentB.genome) {
+                child[key] = parentB.genome[key];
+                crossoverPoints.push(key);
+            }
+            else {
+                child[key] = parentA.genome[key];
+            }
+        }
+        return { child, crossoverPoints };
+    }
+    // ── Mutation ──────────────────────────────────────────
+    mutateGenome(genome, rate) {
+        const mutated = { ...genome };
+        let mutations = 0;
+        const params = this.registry.list();
+        for (const key of Object.keys(mutated)) {
+            if (Math.random() >= rate)
+                continue;
+            const [engine, name] = key.split(':');
+            const def = params.find(p => p.engine === engine && p.name === name);
+            if (!def)
+                continue;
+            const range = def.max - def.min;
+            const noise = this.gaussianNoise() * range * 0.1; // σ = 10% of range
+            let newVal = mutated[key] + noise;
+            // Clamp to bounds
+            newVal = Math.max(def.min, Math.min(def.max, newVal));
+            mutated[key] = newVal;
+            mutations++;
+        }
+        return { genome: mutated, mutations };
+    }
+    // ── Genome Application ────────────────────────────────
+    activate(genome) {
+        for (const [key, value] of Object.entries(genome)) {
+            const [engine, name] = key.split(':');
+            if (engine && name) {
+                this.registry.set(engine, name, value, 'evolution', `Generation #${this.currentGeneration}`);
+            }
+        }
+    }
+    // ── Queries ───────────────────────────────────────────
+    getStatus() {
+        const totalIndividuals = this.db.prepare('SELECT COUNT(*) AS cnt FROM evolution_individuals').get().cnt;
+        const champion = this.getBestIndividual();
+        // Get latest generation stats
+        const latestGen = this.db.prepare('SELECT * FROM evolution_generations ORDER BY generation DESC LIMIT 1').get();
+        return {
+            currentGeneration: this.currentGeneration,
+            populationSize: this.populationSize,
+            bestFitness: latestGen?.best_fitness ?? 0,
+            avgFitness: latestGen?.avg_fitness ?? 0,
+            totalIndividuals,
+            isInitialized: totalIndividuals > 0,
+            config: {
+                populationSize: this.populationSize,
+                mutationRate: this.mutationRate,
+                eliteCount: this.eliteCount,
+                tournamentSize: this.tournamentSize,
+                generationEvery: this.generationEvery,
+            },
+            champion,
+        };
+    }
+    getHistory(limit = 20) {
+        const rows = this.db.prepare('SELECT * FROM evolution_generations ORDER BY generation DESC LIMIT ?').all(limit);
+        return rows.map(r => ({
+            id: r.id,
+            generation: r.generation,
+            bestFitness: r.best_fitness,
+            avgFitness: r.avg_fitness,
+            worstFitness: r.worst_fitness,
+            populationSize: r.population_size,
+            diversity: r.diversity,
+            timestamp: r.timestamp,
+        }));
+    }
+    getBestIndividual() {
+        const row = this.db.prepare('SELECT * FROM evolution_individuals ORDER BY fitness DESC LIMIT 1').get();
+        if (!row)
+            return null;
+        return this.rowToIndividual(row);
+    }
+    getPopulation(generation) {
+        const gen = generation ?? this.currentGeneration;
+        return this.getPopulationInternal(gen);
+    }
+    getLineage(individualId) {
+        const rows = this.db.prepare('SELECT * FROM evolution_lineage WHERE child_id = ? ORDER BY id').all(individualId);
+        return rows.map(r => ({
+            id: r.id,
+            childId: r.child_id,
+            parentId: r.parent_id,
+            crossoverPoint: r.crossover_point,
+            createdAt: r.created_at,
+        }));
+    }
+    // ── Private Helpers ───────────────────────────────────
+    getCurrentGenome() {
+        const genome = {};
+        const params = this.registry.list();
+        for (const p of params) {
+            genome[`${p.engine}:${p.name}`] = p.value;
+        }
+        return genome;
+    }
+    randomVariant(base) {
+        const variant = { ...base };
+        let mutations = 0;
+        const params = this.registry.list();
+        for (const key of Object.keys(variant)) {
+            // Each parameter has a 40% chance of mutation for initial diversity
+            if (Math.random() >= 0.4)
+                continue;
+            const [engine, name] = key.split(':');
+            const def = params.find(p => p.engine === engine && p.name === name);
+            if (!def)
+                continue;
+            const range = def.max - def.min;
+            // Wider noise for initialization: σ = 20% of range
+            const noise = this.gaussianNoise() * range * 0.2;
+            variant[key] = Math.max(def.min, Math.min(def.max, variant[key] + noise));
+            mutations++;
+        }
+        return { genome: variant, mutations };
+    }
+    insertIndividual(generation, genome, fitness, parentAId, parentBId, mutationCount, isActive) {
+        const result = this.db.prepare(`
+      INSERT INTO evolution_individuals (generation, genome_json, fitness, rank, is_active, parent_a_id, parent_b_id, mutation_count)
+      VALUES (?, ?, ?, 0, ?, ?, ?, ?)
+    `).run(generation, JSON.stringify(genome), fitness, isActive ? 1 : 0, parentAId, parentBId, mutationCount);
+        return Number(result.lastInsertRowid);
+    }
+    computeNovelty(genome) {
+        // Compare to existing population — how different is this genome?
+        const rows = this.db.prepare('SELECT genome_json FROM evolution_individuals WHERE generation = ? LIMIT 50').all(this.currentGeneration);
+        if (rows.length === 0)
+            return 0.5; // Neutral novelty for first individual
+        const keys = Object.keys(genome);
+        if (keys.length === 0)
+            return 0;
+        let totalDist = 0;
+        for (const row of rows) {
+            const other = JSON.parse(row.genome_json);
+            let dist = 0;
+            for (const key of keys) {
+                const a = genome[key] ?? 0;
+                const b = other[key] ?? 0;
+                const [engine, name] = key.split(':');
+                const def = this.registry.list().find(p => p.engine === engine && p.name === name);
+                const range = def ? (def.max - def.min) : 1;
+                dist += range > 0 ? Math.abs(a - b) / range : 0;
+            }
+            totalDist += keys.length > 0 ? dist / keys.length : 0;
+        }
+        return Math.min(1, totalDist / rows.length);
+    }
+    computeDiversity(genomes) {
+        if (genomes.length < 2)
+            return 0;
+        const keys = Object.keys(genomes[0] ?? {});
+        if (keys.length === 0)
+            return 0;
+        let totalVariance = 0;
+        for (const key of keys) {
+            const values = genomes.map(g => g[key] ?? 0);
+            const mean = values.reduce((a, b) => a + b, 0) / values.length;
+            const variance = values.reduce((sum, v) => sum + (v - mean) ** 2, 0) / values.length;
+            const [engine, name] = key.split(':');
+            const def = this.registry.list().find(p => p.engine === engine && p.name === name);
+            const range = def ? (def.max - def.min) : 1;
+            // Normalize variance by range^2
+            totalVariance += range > 0 ? variance / (range * range) : 0;
+        }
+        return Math.min(1, Math.sqrt(totalVariance / keys.length));
+    }
+    getPopulationInternal(generation) {
+        const rows = this.db.prepare('SELECT * FROM evolution_individuals WHERE generation = ? ORDER BY fitness DESC').all(generation);
+        return rows.map(r => this.rowToIndividual(r));
+    }
+    rowToIndividual(r) {
+        return {
+            id: r.id,
+            generation: r.generation,
+            genome: JSON.parse(r.genome_json),
+            fitness: r.fitness,
+            rank: r.rank,
+            isActive: r.is_active === 1,
+            parentAId: r.parent_a_id,
+            parentBId: r.parent_b_id,
+            mutationCount: r.mutation_count,
+            createdAt: r.created_at,
+        };
+    }
+    /** Box-Muller transform for Gaussian noise with mean=0, σ=1 */
+    gaussianNoise() {
+        let u = 0;
+        let v = 0;
+        while (u === 0)
+            u = Math.random();
+        while (v === 0)
+            v = Math.random();
+        return Math.sqrt(-2.0 * Math.log(u)) * Math.cos(2.0 * Math.PI * v);
+    }
+}
+//# sourceMappingURL=evolution-engine.js.map

package/dist/metacognition/evolution-engine.js.map

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package/dist/metacognition/index.d.ts

@@ -10,3 +10,5 @@ export { TeachEngine, runTeachEngineMigration } from './teach-engine.js';
 export type { TeachingPackage, TeachEngineStatus } from './teach-engine.js';
 export { SimulationEngine, runSimulationMigration } from './simulation-engine.js';
 export type { Simulation, SimulationOutcome, SimulationStatus } from './simulation-engine.js';
+export { EvolutionEngine, runEvolutionMigration } from './evolution-engine.js';
+export type { EvolutionConfig, Genome, Individual, Generation, LineageEntry, EvolutionDataSources, EvolutionStatus } from './evolution-engine.js';

package/dist/metacognition/index.js

@@ -4,4 +4,5 @@ export { AutoExperimentEngine, runAutoExperimentMigration } from './auto-experim
 export { SelfTestEngine, runSelfTestMigration } from './self-test-engine.js';
 export { TeachEngine, runTeachEngineMigration } from './teach-engine.js';
 export { SimulationEngine, runSimulationMigration } from './simulation-engine.js';
+export { EvolutionEngine, runEvolutionMigration } from './evolution-engine.js';
 //# sourceMappingURL=index.js.map

package/dist/metacognition/index.js.map

@@ -1 +1 @@
-{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/metacognition/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,iBAAiB,EAAE,6BAA6B,EAAE,MAAM,yBAAyB,CAAC;AAG3F,OAAO,EAAE,kBAAkB,EAAE,yBAAyB,EAAE,MAAM,2BAA2B,CAAC;AAG1F,OAAO,EAAE,oBAAoB,EAAE,0BAA0B,EAAE,MAAM,6BAA6B,CAAC;AAG/F,OAAO,EAAE,cAAc,EAAE,oBAAoB,EAAE,MAAM,uBAAuB,CAAC;AAG7E,OAAO,EAAE,WAAW,EAAE,uBAAuB,EAAE,MAAM,mBAAmB,CAAC;AAGzE,OAAO,EAAE,gBAAgB,EAAE,sBAAsB,EAAE,MAAM,wBAAwB,CAAC"}
+{"version":3,"file":"index.js","sourceRoot":"","sources":["../../src/metacognition/index.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,iBAAiB,EAAE,6BAA6B,EAAE,MAAM,yBAAyB,CAAC;AAG3F,OAAO,EAAE,kBAAkB,EAAE,yBAAyB,EAAE,MAAM,2BAA2B,CAAC;AAG1F,OAAO,EAAE,oBAAoB,EAAE,0BAA0B,EAAE,MAAM,6BAA6B,CAAC;AAG/F,OAAO,EAAE,cAAc,EAAE,oBAAoB,EAAE,MAAM,uBAAuB,CAAC;AAG7E,OAAO,EAAE,WAAW,EAAE,uBAAuB,EAAE,MAAM,mBAAmB,CAAC;AAGzE,OAAO,EAAE,gBAAgB,EAAE,sBAAsB,EAAE,MAAM,wBAAwB,CAAC;AAGlF,OAAO,EAAE,eAAe,EAAE,qBAAqB,EAAE,MAAM,uBAAuB,CAAC"}

package/dist/research/research-orchestrator.d.ts

@@ -33,6 +33,7 @@ import type { DataScout } from './data-scout.js';
 import type { SimulationEngine } from '../metacognition/simulation-engine.js';
 import type { MemoryPalace } from '../memory-palace/memory-palace.js';
 import type { GoalEngine } from '../goals/goal-engine.js';
+import type { EvolutionEngine } from '../metacognition/evolution-engine.js';
 import { AutoResponder } from './auto-responder.js';
 export interface ResearchOrchestratorConfig {
     brainName: string;
@@ -79,6 +80,7 @@ export declare class ResearchOrchestrator {
     private simulationEngine;
     private memoryPalace;
     private goalEngine;
+    private evolutionEngine;
     private brainName;
     private feedbackTimer;
     private cycleCount;
@@ -134,6 +136,8 @@ export declare class ResearchOrchestrator {
     setMemoryPalace(palace: MemoryPalace): void;
     /** Set the GoalEngine — autonomous goal setting and tracking. */
     setGoalEngine(engine: GoalEngine): void;
+    /** Set the EvolutionEngine — evolves parameter configurations via genetic algorithm. */
+    setEvolutionEngine(engine: EvolutionEngine): void;
     /** Set the PredictionEngine — wires journal into it. */
     setPredictionEngine(engine: PredictionEngine): void;
     /** Start the autonomous feedback loop timer. */
@@ -166,6 +170,13 @@ export declare class ResearchOrchestrator {
     /** Pick a debate topic from recent attention, anomalies, or journal insights. */
     private pickDebateTopic;
     private generateSelfImprovementSuggestions;
+    /** Check which optional engines are actually installed. */
+    getInstalledCapabilities(): {
+        installed: string[];
+        missing: string[];
+    };
+    /** Generate dynamic meta-suggestions based on actual engine state instead of hardcoded feature requests. */
+    private generateDynamicMetaSuggestions;
     /** Auto-propose an experiment on Brain's own parameters. */
     private proposeAutoExperiment;
     /** Feed cycle measurements into running experiments. */