@tiangong-ai/cli 0.0.61 → 0.0.63

package/dist/research/workspace/scientific-amendment.js.map

@@ -0,0 +1 @@
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package/dist/research/workspace/scientific-fulfillment-audit.d.ts

@@ -1,3 +1,21 @@
-import type { OutputRecord } from "./types.js";
+import { scientificAmendmentImpact, type ScientificAmendmentRecord } from "./scientific-amendment.js";
+import type { ScientificFulfillmentRecord } from "./scientific-fulfillment.js";
+import { type ScientificDesignContract } from "./scientific-design.js";
+import type { OutputRecord, ProjectState } from "./types.js";
+export interface ScientificAuditHistory {
+    project: ProjectState;
+    base: ScientificDesignContract;
+    fulfillments: Array<{
+        sequence: number;
+        record: ScientificFulfillmentRecord;
+    }>;
+    amendments: Array<{
+        sequence: number;
+        record: ScientificAmendmentRecord;
+    }>;
+    amendmentImpact: ReturnType<typeof scientificAmendmentImpact>;
+}
+/** Reconstruct only already verified declarations committed before one event. */
+export declare function scientificAuditViewBefore(history: ScientificAuditHistory, sequence: number): ScientificDesignContract;
 /** A portable integrity check, not certification of authorship, scientific truth or execution. */
-export declare function verifyScientificFulfillmentAudit(bundle: string, projectId: string, files: OutputRecord[]): Promise<void>;
+export declare function verifyScientificFulfillmentAudit(bundle: string, projectId: string, files: OutputRecord[]): Promise<ScientificAuditHistory | undefined>;

package/dist/research/workspace/scientific-fulfillment-audit.js

@@ -1,8 +1,23 @@
+import { validateScientificAmendmentRecord, scientificAmendmentImpact, projectScientificAmendments, } from "./scientific-amendment.js";
 import { readFile } from "node:fs/promises";
+import { parseAtomRecord } from "./content-evidence.js";
 import { CliError } from "../../errors.js";
 import { parseScientificDesign } from "./scientific-design.js";
 import { applyScientificFulfillmentRecord, validateScientificFulfillmentRecord, } from "./scientific-fulfillment.js";
 import { canonicalJson, isObject, resolveContained, sha256Text } from "./storage.js";
+/** Reconstruct only already verified declarations committed before one event. */
+export function scientificAuditViewBefore(history, sequence) {
+    const records = history.fulfillments
+        .filter((item) => item.sequence < sequence)
+        .map((item) => item.record);
+    const amendments = history.amendments
+        .filter((item) => item.sequence < sequence)
+        .map((item) => item.record);
+    const view = projectScientificAmendments(history.base, history.project.scientificDesign.designSha256, records, amendments);
+    for (const record of records)
+        applyScientificFulfillmentRecord(view, record);
+    return view;
+}
 /** A portable integrity check, not certification of authorship, scientific truth or execution. */
 export async function verifyScientificFulfillmentAudit(bundle, projectId, files) {
     const indexed = new Map(files.map((file) => [file.path, file]));
@@ -30,13 +45,31 @@ export async function verifyScientificFulfillmentAudit(bundle, projectId, files)
         throw invalid();
     const events = proof.events.filter((event) => event.scope === projectId && event.type === "scientific.fulfillment.recorded");
     const binding = project.scientificDesign;
-    if (!events.length) {
-        if (binding?.fulfillmentSha256)
+    const amendmentEvents = proof.events.filter((event) => event.scope === projectId && event.type === "scientific.amendment.recorded");
+    if (!binding) {
+        if (events.length || amendmentEvents.length)
             throw invalid();
         return;
     }
-    if (!binding || binding.fulfillmentSha256 !== events.at(-1)?.payload.recordSha256)
+    if ((binding.fulfillmentSha256 ?? null) !== (events.at(-1)?.payload.recordSha256 ?? null) ||
+        (binding.amendmentSha256 ?? null) !== (amendmentEvents.at(-1)?.payload.recordSha256 ?? null))
         throw invalid();
+    for (const event of [...events, ...amendmentEvents]) {
+        if (!Number.isSafeInteger(event.sequence) ||
+            event.sequence < 1 ||
+            event.sourcePayloadSha256 !== sha256Text(canonicalJson(event.payload)) ||
+            event.sourceEventHash !==
+                sha256Text(canonicalJson({
+                    schemaVersion: 1,
+                    sequence: event.sequence,
+                    timestamp: event.timestamp,
+                    type: event.type,
+                    scope: event.scope,
+                    payload: event.payload,
+                    previousHash: event.sourcePreviousHash,
+                })))
+            throw invalid();
+    }
     const basePath = `project/scientific/design/objects/${binding.designSha256}.json`;
     if (indexed.get(basePath)?.sha256 !== binding.designSha256)
         throw invalid();
@@ -44,6 +77,7 @@ export async function verifyScientificFulfillmentAudit(bundle, projectId, files)
     if (base.projectId !== projectId)
         throw invalid();
     const effective = structuredClone(base);
+    const fulfillmentRecords = [];
     let parent = null;
     const seen = new Set();
     for (const event of events) {
@@ -98,15 +132,46 @@ export async function verifyScientificFulfillmentAudit(bundle, projectId, files)
                             !Array.isArray(atom.evidenceRoleIds) ||
                             !atom.evidenceRoleIds.some((role) => declared?.sourceEvidenceRoleIds.includes(String(role))))
                             throw invalid();
-                        const { atomSha256, ...atomCore } = atom;
-                        if (atomSha256 !== sha256Text(canonicalJson(atomCore)))
+                        try {
+                            parseAtomRecord(atom);
+                        }
+                        catch {
                             throw invalid();
+                        }
                     }
             }
         }
+        fulfillmentRecords.push(record);
         applyScientificFulfillmentRecord(effective, record);
         parent = hash;
     }
+    const amendments = [];
+    for (const event of amendmentEvents) {
+        if (event.sourcePayloadSha256 !== sha256Text(canonicalJson(event.payload)))
+            throw invalid();
+        const hash = String(event.payload.recordSha256);
+        const record = validateScientificAmendmentRecord(await read(`project/scientific/amendments/${hash}.json`), projectId, hash);
+        if (event.payload.planSha256 !== record.plan.planSha256 ||
+            event.payload.parentAmendmentSha256 !== record.plan.parentAmendmentSha256 ||
+            !isObject(event.payload.mutation) ||
+            event.payload.mutation.requestSha256 !== hash)
+            throw invalid();
+        const sourcePath = `project/scientific/authorization/${record.amendmentAuthorization.sourceSha256}.txt`;
+        const source = indexed.get(sourcePath);
+        if (source?.sha256 !== record.amendmentAuthorization.sourceSha256 ||
+            source.bytes !== record.amendmentAuthorization.sourceBytes)
+            throw invalid();
+        const sourceBytes = await readFile(resolveContained(bundle, sourcePath));
+        if (sourceBytes.length !== source.bytes ||
+            sha256Text(sourceBytes.toString("utf8")) !== source.sha256)
+            throw invalid();
+        const designPath = `project/scientific/design/objects/${record.design.sha256}.json`;
+        if (indexed.get(designPath)?.sha256 !== record.design.sha256)
+            throw invalid();
+        await read(designPath);
+        amendments.push(record);
+    }
+    const amendedBase = projectScientificAmendments(base, binding.designSha256, fulfillmentRecords, amendments);
     // Current prepared/passed gate packets must bind their deadline-specific view.
     for (const role of ["research-design", "evidence-construct", "pilot-methods"]) {
         const gate = binding.gates[role];
@@ -118,7 +183,9 @@ export async function verifyScientificFulfillmentAudit(bundle, projectId, files)
             sha256Text(canonicalJson(packetCore)) !== packetSha256 ||
             !isObject(packet.design))
             throw invalid();
-        const view = structuredClone(base);
+        if ((packet.design.amendmentSha256 ?? null) !== (binding.amendmentSha256 ?? null))
+            throw invalid();
+        const view = structuredClone(amendedBase);
         for (const event of events)
             applyScientificFulfillmentRecord(view, validateScientificFulfillmentRecord(await read(`project/scientific/fulfillments/${event.payload.recordSha256}.json`), projectId, String(event.payload.recordSha256)), role);
         const packetView = packet.design.fulfillment;
@@ -130,8 +197,21 @@ export async function verifyScientificFulfillmentAudit(bundle, projectId, files)
         else if (canonicalJson(view) !== canonicalJson(base))
             throw invalid();
     }
+    return {
+        project,
+        base,
+        fulfillments: fulfillmentRecords.map((record, index) => ({
+            record,
+            sequence: events[index].sequence,
+        })),
+        amendments: amendments.map((record, index) => ({
+            record,
+            sequence: amendmentEvents[index].sequence,
+        })),
+        amendmentImpact: scientificAmendmentImpact(amendments, base),
+    };
 }
 function invalid() {
-    return new CliError("Scientific fulfillment audit relationships or source objects are inconsistent.", { code: "RESEARCH_AUDIT_BUNDLE_INVALID", exitCode: 3 });
+    return new CliError("Scientific design history, fulfillment, amendment authorization or source objects are inconsistent.", { code: "RESEARCH_AUDIT_BUNDLE_INVALID", exitCode: 3 });
 }
 //# sourceMappingURL=scientific-fulfillment-audit.js.map

package/dist/research/workspace/scientific-fulfillment-audit.js.map

@@ -1 +1 @@
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package/dist/research/workspace/scientific-fulfillment.d.ts

@@ -1,5 +1,6 @@
 import { type ScientificDesignContract } from "./scientific-design.js";
 import type { JournalEvent, ProjectState, ScientificReviewRole } from "./types.js";
+import { type ScientificAmendmentRecord } from "./scientific-amendment.js";
 type DeferredGate = "evidence-construct" | "pilot-methods";
 type ObjectInput = {
     modelId: string;
@@ -53,6 +54,8 @@ export interface ScientificFulfillmentRecord extends Omit<FulfillmentInput, "par
 }
 export interface ScientificFulfillmentView {
     base: ScientificDesignContract;
+    amendedBase: ScientificDesignContract;
+    amendments: ScientificAmendmentRecord[];
     contract: ScientificDesignContract;
     headSha256: string | null;
     effectiveSha256: string;
@@ -64,7 +67,13 @@ export declare function scientificFulfillmentLocator(projectId: string, hash: st
 export declare function validateScientificFulfillmentRecord(value: unknown, projectId: string, hash: string): ScientificFulfillmentRecord;
 /** The base bytes never change. The per-gate projection includes only slots due by that gate. */
 export declare function loadScientificFulfillmentView(root: string, project: ProjectState, throughGate?: ScientificReviewRole, knownEvents?: JournalEvent[]): Promise<ScientificFulfillmentView>;
-export declare function applyScientificFulfillmentRecord(design: ScientificDesignContract, record: ScientificFulfillmentRecord, throughGate?: ScientificReviewRole): void;
+/** The pure projector needs scientific values, not registration/commit metadata. */
+export interface ScientificFulfillmentProjection {
+    modelImplementations: Array<Omit<ScientificFulfillmentRecord["modelImplementations"][number], "recordSha256">>;
+    environmentLocks: Array<Omit<ScientificFulfillmentRecord["environmentLocks"][number], "recordSha256">>;
+    parameterStates: ScientificFulfillmentRecord["parameterStates"];
+}
+export declare function applyScientificFulfillmentRecord(design: ScientificDesignContract, record: ScientificFulfillmentProjection, throughGate?: ScientificReviewRole): void;
 export declare function recordScientificFulfillment(root: string, projectId: string, value: unknown): Promise<ScientificFulfillmentRecord>;
 export declare function inspectScientificFulfillment(root: string, projectId: string): Promise<{
     projectId: string;

package/dist/research/workspace/scientific-fulfillment.js

@@ -10,6 +10,7 @@ import { configuredResearchSecrets, sanitizeResearchValue } from "./sanitization
 import { evaluateScientificDesign, readAndVerifyScientificDesign, } from "./scientific-design.js";
 import { resolveScientificObjectBinding } from "./scientific-objects.js";
 import { canonicalJson, isObject, pathExists, resolveContained, sha256Text, workspacePaths, writeJsonAtomic, } from "./storage.js";
+import { loadScientificAmendments, projectScientificAmendments, } from "./scientific-amendment.js";
 import { withWorkspaceLock } from "./workspace.js";
 const HASH = /^[a-f0-9]{64}$/;
 const ID = "^[A-Za-z0-9][A-Za-z0-9._:-]{0,127}$";
@@ -212,10 +213,19 @@ export async function loadScientificFulfillmentView(root, project, throughGate,
         });
     }
     const head = binding.fulfillmentSha256 ?? null;
+    const hasFulfillmentHistory = Boolean(head) ||
+        (await pathExists(join(workspacePaths(root).projects, project.id, "scientific/fulfillments")));
+    const hasAmendmentHistory = Boolean(binding.amendmentSha256) ||
+        (await pathExists(join(workspacePaths(root).projects, project.id, "scientific/amendments")));
+    // Legacy/unamended reads retain constant-cost absent-namespace checks. Reuse
+    // an operation's verified journal when supplied; active history is never cached.
+    const journalEvents = knownEvents ??
+        (hasFulfillmentHistory || hasAmendmentHistory
+            ? await readVerifiedJournal(workspacePaths(root).journal)
+            : []);
     const records = [];
-    if (head ||
-        (await pathExists(join(workspacePaths(root).projects, project.id, "scientific/fulfillments")))) {
-        const events = (knownEvents ?? (await readVerifiedJournal(workspacePaths(root).journal))).filter((event) => event.scope === project.id && event.type === "scientific.fulfillment.recorded");
+    if (hasFulfillmentHistory) {
+        const events = journalEvents.filter((event) => event.scope === project.id && event.type === "scientific.fulfillment.recorded");
         if ((events.at(-1)?.payload.recordSha256 ?? null) !== head)
             throw conflict();
         let cursor = head;
@@ -243,8 +253,10 @@ export async function loadScientificFulfillmentView(root, project, throughGate,
     const atomBindings = records.some((record) => record.parameterStates.length)
         ? await loadAtomBindings(root, project.id)
         : undefined;
-    const complete = structuredClone(verified.contract);
-    const contract = throughGate ? structuredClone(verified.contract) : complete;
+    const amendments = await loadScientificAmendments(root, project, journalEvents);
+    const amendedBase = projectScientificAmendments(verified.contract, binding.designSha256, records, amendments);
+    const complete = structuredClone(amendedBase);
+    const contract = throughGate ? structuredClone(amendedBase) : complete;
     for (const record of records) {
         await assertObjectRecords(root, record, atomBindings);
         // Even an early-gate projection must reject invalid future-due slots.
@@ -254,11 +266,13 @@ export async function loadScientificFulfillmentView(root, project, throughGate,
     }
     return {
         base: verified.contract,
+        amendedBase,
+        amendments,
         contract,
         headSha256: head,
         effectiveSha256: sha256Text(canonicalJson(contract)),
         records,
-        deferredObjectRuleIds: resolvedDeferredObjectRules(verified.contract, contract, records, throughGate),
+        deferredObjectRuleIds: resolvedDeferredObjectRules(amendedBase, contract, records, throughGate),
     };
 }
 async function loadAtomBindings(root, projectId) {

package/dist/research/workspace/scientific-fulfillment.js.map

@@ -1 +1 @@
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