@tiangong-ai/cli 0.0.59 → 0.0.61

package/dist/research/workspace/project-mutations.js

@@ -0,0 +1,332 @@
+import { randomUUID } from "node:crypto";
+import { lstat, mkdir, readFile, readdir, rename, rm, rmdir } from "node:fs/promises";
+import { basename, join } from "node:path";
+import { CliError } from "../../errors.js";
+import { appendEvidenceLedgerEvent, evidenceLedgerPath } from "./evidence-ledger.js";
+import { appendJournalEvent, readVerifiedJournal } from "./journal.js";
+import { canonicalJson, isObject, sha256Text, workspacePaths, writeJsonAtomic } from "./storage.js";
+const ID = /^[a-z0-9][a-z0-9-]{2,63}$/;
+const HASH = /^[a-f0-9]{64}$/;
+const UUID = /^[a-f0-9-]{36}$/;
+const MAX_RECORD_BYTES = 16 * 1024 * 1024;
+function failure(message, record) {
+    return new CliError(message, {
+        code: "RESEARCH_PROJECT_RECOVERY_REQUIRED",
+        exitCode: 3,
+        details: record
+            ? {
+                operationId: record.identity.operationId,
+                sourceProjectId: record.identity.sourceProjectId,
+                targetProjectId: record.identity.targetProjectId,
+                recovery: "Preserve the stored state. Resolve the reported conflict or restore a trusted backup before retrying the same explicit request; do not forge journal/project records.",
+            }
+            : undefined,
+    });
+}
+async function privateDirectory(root, parts, create) {
+    let path = workspacePaths(root).control;
+    if (!create) {
+        const existing = await lstat(join(path, "lineage", ...parts)).catch((error) => {
+            if (error.code === "ENOENT" || error.code === "ENOTDIR")
+                return undefined;
+            throw error;
+        });
+        if (!existing)
+            return null;
+    }
+    await requireDirectory(path);
+    for (const part of ["lineage", ...parts]) {
+        path = join(path, part);
+        let info = await lstat(path).catch((error) => {
+            if (error.code === "ENOENT")
+                return undefined;
+            throw error;
+        });
+        if (!info) {
+            if (!create)
+                return null;
+            await mkdir(path, { mode: 0o700 });
+            info = await lstat(path);
+        }
+        if (!info.isDirectory() || info.isSymbolicLink()) {
+            throw failure("Project recovery storage must use regular non-symlink directories.");
+        }
+    }
+    return path;
+}
+async function requireDirectory(path) {
+    const info = await lstat(path).catch(() => undefined);
+    if (!info?.isDirectory() || info.isSymbolicLink()) {
+        throw failure("Project recovery directories must be regular and cannot redirect through symlinks.");
+    }
+}
+function filename(record) {
+    return (record.identity.kind +
+        "-" +
+        (record.identity.targetProjectId ?? record.identity.sourceProjectId) +
+        ".json");
+}
+function bindRecord(core) {
+    return { ...core, recordSha256: sha256Text(canonicalJson(core)) };
+}
+async function readRecord(path) {
+    const info = await lstat(path).catch(() => undefined);
+    if (!info?.isFile() || info.isSymbolicLink() || info.size > MAX_RECORD_BYTES) {
+        throw failure("Project recovery record is not a bounded regular file.");
+    }
+    const value = await readRecoveryJson(path);
+    if (!isObject(value) || !isObject(value.identity))
+        throw failure("Project recovery record is invalid.");
+    const identity = value.identity;
+    if (identity.schemaVersion !== 1 ||
+        !["fork", "retry", "acquisition-revision", "task-scope", "scientific-fulfillment"].includes(String(identity.kind)) ||
+        typeof identity.operationId !== "string" ||
+        !UUID.test(identity.operationId) ||
+        typeof identity.sourceProjectId !== "string" ||
+        !ID.test(identity.sourceProjectId) ||
+        typeof identity.requestSha256 !== "string" ||
+        !HASH.test(identity.requestSha256) ||
+        typeof identity.beforeSha256 !== "string" ||
+        !HASH.test(identity.beforeSha256) ||
+        (identity.kind === "fork"
+            ? typeof identity.targetProjectId !== "string" ||
+                !ID.test(identity.targetProjectId) ||
+                identity.targetProjectId === identity.sourceProjectId
+            : identity.targetProjectId !== null) ||
+        (value.after !== null &&
+            (!isObject(value.after) || value.after.id !== identity.sourceProjectId)) ||
+        (value.afterSha256 !== null &&
+            (typeof value.afterSha256 !== "string" || !HASH.test(value.afterSha256))) ||
+        (value.targetSha256 !== null &&
+            (typeof value.targetSha256 !== "string" || !HASH.test(value.targetSha256))))
+        throw failure("Project recovery record identity is invalid.");
+    const { recordSha256, ...core } = value;
+    if (recordSha256 !== sha256Text(canonicalJson(core)) ||
+        (value.after === null
+            ? value.afterSha256 !== null
+            : value.afterSha256 !== sha256Text(canonicalJson(value.after)))) {
+        throw failure("Project recovery record failed its hash binding.");
+    }
+    const record = value;
+    if (basename(path) !== filename(record))
+        throw failure("Project recovery record filename is invalid.");
+    return record;
+}
+async function projectState(root, projectId) {
+    const projects = workspacePaths(root).projects;
+    await requireDirectory(projects);
+    await requireDirectory(join(projects, projectId));
+    const path = join(projects, projectId, "project.json");
+    const info = await lstat(path).catch(() => undefined);
+    if (!info?.isFile() || info.isSymbolicLink() || info.size > MAX_RECORD_BYTES) {
+        throw failure("Project recovery requires a bounded regular project state.");
+    }
+    const value = await readRecoveryJson(path);
+    if (!isObject(value) || value.id !== projectId)
+        throw failure("Project recovery state identity is invalid.");
+    return value;
+}
+async function readRecoveryJson(path) {
+    try {
+        return JSON.parse(await readFile(path, "utf8"));
+    }
+    catch {
+        throw failure("Project recovery JSON is missing or invalid; preserved bytes were not changed.");
+    }
+}
+/** Called only under the existing workspace lease, before creating a fork target. */
+export async function beginProjectMutation(root, kind, source, requestSha256, targetProjectId = null) {
+    if (!ID.test(source.id) ||
+        !HASH.test(requestSha256) ||
+        (kind === "fork"
+            ? !targetProjectId || !ID.test(targetProjectId) || targetProjectId === source.id
+            : targetProjectId !== null)) {
+        throw failure("Project mutation identity is invalid.");
+    }
+    const directory = (await privateDirectory(root, ["pending-project-mutations"], true));
+    const record = bindRecord({
+        identity: {
+            schemaVersion: 1,
+            kind,
+            operationId: randomUUID(),
+            sourceProjectId: source.id,
+            targetProjectId,
+            requestSha256,
+            beforeSha256: sha256Text(canonicalJson(source)),
+        },
+        after: null,
+        afterSha256: null,
+        targetSha256: null,
+    });
+    const path = join(directory, filename(record));
+    if (await lstat(path).catch(() => undefined))
+        throw failure("An earlier project mutation needs recovery.", record);
+    await writeJsonAtomic(path, record);
+    await appendJournalEvent(workspacePaths(root).journal, "project.mutation.started", source.id, {
+        ...record.identity,
+        identitySha256: sha256Text(canonicalJson(record.identity)),
+    });
+    return record;
+}
+export async function prepareProjectMutation(root, record, after) {
+    const directory = await privateDirectory(root, ["pending-project-mutations"], false);
+    if (!directory || after.id !== record.identity.sourceProjectId)
+        throw failure("Prepared project mutation identity changed.", record);
+    const currentRecord = await readRecord(join(directory, filename(record)));
+    if (currentRecord.recordSha256 !== record.recordSha256 ||
+        sha256Text(canonicalJson(await projectState(root, record.identity.sourceProjectId))) !==
+            record.identity.beforeSha256) {
+        throw failure("Project state changed during the prepared mutation.", record);
+    }
+    const target = record.identity.targetProjectId
+        ? await projectState(root, record.identity.targetProjectId)
+        : null;
+    const prepared = bindRecord({
+        identity: record.identity,
+        after: structuredClone(after),
+        afterSha256: sha256Text(canonicalJson(after)),
+        targetSha256: target ? sha256Text(canonicalJson(target)) : null,
+    });
+    await writeJsonAtomic(join(directory, filename(prepared)), prepared);
+    return prepared;
+}
+export function projectMutationBinding(record) {
+    return {
+        operationId: record.identity.operationId,
+        requestSha256: record.identity.requestSha256,
+        recordSha256: record.recordSha256,
+        resultSha256: record.afterSha256 ?? "",
+    };
+}
+function committedEvent(events, record) {
+    return events.find((event) => event.type ===
+        (record.identity.kind === "fork"
+            ? "project.forked"
+            : record.identity.kind === "retry"
+                ? "project.retry.requested"
+                : record.identity.kind === "acquisition-revision"
+                    ? "project.acquisition.revision.requested"
+                    : record.identity.kind === "scientific-fulfillment"
+                        ? "scientific.fulfillment.recorded"
+                        : "project.task.scope.approved") &&
+        isObject(event.payload.mutation) &&
+        event.payload.mutation.operationId === record.identity.operationId);
+}
+/** The journal event is the commit point; state/ledger files are recoverable projections. */
+async function settleMutation(root, record, events) {
+    const paths = workspacePaths(root);
+    await requireDirectory(paths.projects);
+    const identity = record.identity;
+    const started = events.find((event) => event.type === "project.mutation.started" &&
+        event.payload.operationId === identity.operationId);
+    const commit = committedEvent(events, record);
+    const targetPath = identity.targetProjectId
+        ? join(paths.projects, identity.targetProjectId)
+        : null;
+    const targetInfo = targetPath
+        ? await lstat(targetPath).catch((error) => {
+            if (error.code === "ENOENT")
+                return undefined;
+            throw error;
+        })
+        : undefined;
+    if (started?.scope !== identity.sourceProjectId ||
+        started?.payload.identitySha256 !== sha256Text(canonicalJson(identity))) {
+        // A crash before the intent append cannot have created a target.
+        if (started || commit || targetInfo)
+            throw failure("Project recovery has no matching journal intent.", record);
+    }
+    else if (commit) {
+        const binding = commit.payload.mutation;
+        if (!isObject(binding) ||
+            binding.recordSha256 !== record.recordSha256 ||
+            binding.requestSha256 !== identity.requestSha256 ||
+            binding.resultSha256 !== record.afterSha256 ||
+            commit.scope !== (identity.targetProjectId ?? identity.sourceProjectId) ||
+            (identity.kind === "fork"
+                ? commit.payload.sourceProjectId !== identity.sourceProjectId ||
+                    commit.payload.targetProjectId !== identity.targetProjectId
+                : commit.payload.projectId !== identity.sourceProjectId) ||
+            !record.after ||
+            !record.afterSha256) {
+            throw failure("Committed project mutation does not match its recovery record.", record);
+        }
+        if (targetPath) {
+            if (!targetInfo?.isDirectory() ||
+                targetInfo.isSymbolicLink() ||
+                sha256Text(canonicalJson(await projectState(root, identity.targetProjectId))) !==
+                    record.targetSha256) {
+                throw failure("Committed fork target changed before recovery completed.", record);
+            }
+        }
+        const current = await projectState(root, identity.sourceProjectId);
+        const currentHash = sha256Text(canonicalJson(current));
+        if (currentHash !== record.afterSha256) {
+            if (currentHash !== identity.beforeSha256)
+                throw failure("Recovery will not overwrite changed project state.", record);
+            await writeJsonAtomic(join(paths.projects, identity.sourceProjectId, "project.json"), record.after);
+        }
+        if (identity.kind === "fork") {
+            const ledger = await readVerifiedJournal(evidenceLedgerPath(root, identity.sourceProjectId));
+            if (!ledger.some((event) => event.type === "project.superseded" &&
+                event.payload.operationId === identity.operationId)) {
+                await appendEvidenceLedgerEvent(root, identity.sourceProjectId, "project.superseded", {
+                    sourceProjectId: identity.sourceProjectId,
+                    supersededBy: identity.targetProjectId,
+                    reason: "recovery-fork",
+                    operationId: identity.operationId,
+                    commitSha256: commit.hash,
+                });
+            }
+        }
+    }
+    else {
+        if (targetInfo) {
+            if (!targetInfo.isDirectory() || targetInfo.isSymbolicLink()) {
+                throw failure("Recovery will not move an unknown or linked fork target.", record);
+            }
+            // Preserve interrupted bytes instead of recursively deleting a control tree.
+            const retained = (await privateDirectory(root, ["interrupted-project-mutations", identity.operationId], true));
+            await rename(targetPath, join(retained, "target"));
+        }
+        if (!events.some((event) => event.type === "project.mutation.aborted" &&
+            event.payload.operationId === identity.operationId)) {
+            await appendJournalEvent(paths.journal, "project.mutation.aborted", identity.sourceProjectId, {
+                operationId: identity.operationId,
+                mutationKind: identity.kind,
+                targetProjectId: identity.targetProjectId,
+                retainedInterruptedTarget: Boolean(targetInfo),
+            });
+        }
+    }
+    const directory = (await privateDirectory(root, ["pending-project-mutations"], false));
+    await rm(join(directory, filename(record)));
+    // Leave no normal-path recovery scan once all owned records are settled.
+    await rmdir(directory).catch(() => undefined);
+    return Boolean(commit);
+}
+/** Settle an operation after success or caught failure; committed targets are never rolled back. */
+export async function settleProjectMutation(root, record) {
+    const directory = await privateDirectory(root, ["pending-project-mutations"], false);
+    const path = directory ? join(directory, filename(record)) : null;
+    if (!path || !(await lstat(path).catch(() => undefined))) {
+        return Boolean(committedEvent(await readVerifiedJournal(workspacePaths(root).journal), record));
+    }
+    const latest = await readRecord(path);
+    if (latest.identity.operationId !== record.identity.operationId)
+        throw failure("Project recovery identity changed.", record);
+    return settleMutation(root, latest, await readVerifiedJournal(workspacePaths(root).journal));
+}
+/** Constant-size directory check in normal operation; journal/state work only when pending. */
+export async function recoverProjectMutations(root) {
+    const directory = await privateDirectory(root, ["pending-project-mutations"], false);
+    if (!directory)
+        return;
+    const files = (await readdir(directory)).filter((name) => /^(?:fork|retry|acquisition-revision|task-scope|scientific-fulfillment)-[a-z0-9][a-z0-9-]{2,63}\.json$/.test(name));
+    if (!files.length)
+        return;
+    const events = await readVerifiedJournal(workspacePaths(root).journal);
+    for (const file of files.sort())
+        await settleMutation(root, await readRecord(join(directory, file)), events);
+}
+//# sourceMappingURL=project-mutations.js.map

package/dist/research/workspace/project-mutations.js.map

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package/dist/research/workspace/projects.d.ts

@@ -1,3 +1,4 @@
+import { type ProjectAuthorityIndex } from "./project-authority.js";
 import { type VerifiedScientificDesign } from "./scientific-design.js";
 import type { AgentKind, ProjectEvidenceRequirements, ProjectInput, ProjectInputTrustStatus, ResearchPolicyBinding, ScientificDesignBinding, ScientificReviewRole, ProjectState, WorkPackage, VerifiedProjectInputPlan } from "./types.js";
 export declare function initializeProject(root: string, projectId: string, question: string, evidenceRequirements?: ProjectEvidenceRequirements, budgetConfirmed?: boolean, inputPlan?: VerifiedProjectInputPlan, publicationPolicy?: ResearchPolicyBinding, scientificDesignInput?: {
@@ -10,7 +11,7 @@ export declare function addProjectInput(root: string, projectId: string, inputPa
     independentlyReproduced?: boolean;
 }): Promise<ProjectInput>;
 export declare function loadProject(root: string, projectId: string): Promise<ProjectState>;
-export declare function listProjects(root: string): Promise<ProjectState[]>;
+export declare function listProjects(root: string, authority?: ProjectAuthorityIndex): Promise<ProjectState[]>;
 export declare function saveProject(root: string, project: ProjectState): Promise<void>;
 export declare function retryProjectPackage(root: string, projectId: string, packageId?: string): Promise<ProjectState>;
 export declare function forkProject(root: string, sourceProjectId: string, targetProjectId: string, resumeThrough?: "discover" | "acquire" | "analyze" | "synthesize", scientificReapproval?: {