@tiangong-ai/cli 0.0.42 → 0.0.44

package/dist/research/workspace/publication-workflow.js

@@ -9,7 +9,7 @@ import { loadProject } from "./projects.js";
 import { assertResearchPolicyBinding } from "./research-policy.js";
 import { assertScientificGateForStage } from "./scientific-review.js";
 import { canonicalJson, ensureDirectory, isObject, pathExists, readJsonFile, sha256File, sha256Text, workspacePaths, writeJsonAtomic, } from "./storage.js";
-import { withWorkspaceLock } from "./workspace.js";
+import { loadWorkspaceConfig, withWorkspaceLock } from "./workspace.js";
 const REQUIRED_REVIEW_ROLES = [
     "evidence",
     "methods-reproducibility",
@@ -24,6 +24,20 @@ const EDITOR_DECISIONS = new Set([
     "reject-and-redesign",
     "desk-reject",
 ]);
+const REQUIRED_SUBMISSION_ROLES = [
+    "cover-letter",
+    "title-page",
+    "reporting-checklist",
+    "data-availability",
+    "code-availability",
+    "source-data",
+];
+const SUBMISSION_ROLES = new Set([
+    ...REQUIRED_SUBMISSION_ROLES,
+    "figure-table-index",
+    "extended-data",
+    "supplementary-methods",
+]);
 export function publicationAssessmentSchema() {
     const stringArraySchema = { type: "array", items: { type: "string", minLength: 1 } };
     return {
@@ -220,6 +234,13 @@ export function publicationReviewSchema(role) {
 export async function freezePublicationManuscript(input) {
     return withWorkspaceLock(input.root, "research.publication.freeze", async () => {
         const project = await requireClosedTopJournalProject(input.root, input.projectId);
+        const config = await loadWorkspaceConfig(input.root);
+        if (config.producer.agent !== input.producerAgent) {
+            throw publicationError("RESEARCH_PUBLICATION_PRODUCER_MISMATCH", "Publication generation must be frozen by the configured native producer agent family.", 3, {
+                configuredProducer: config.producer.agent,
+                requestedProducer: input.producerAgent,
+            });
+        }
         await assertScientificGateForStage(input.root, project, "close");
         const producerSessionId = requireSessionId(input.producerSessionId, "producer");
         const producerSessionSha256 = sha256Text(producerSessionId);
@@ -227,24 +248,75 @@ export async function freezePublicationManuscript(input) {
             throw publicationError("RESEARCH_PUBLICATION_REVIEW_NOT_INDEPENDENT", "A native producer session must not reuse any prior independent reviewer session.");
         }
         const assessmentValue = parsePublicationAssessment(JSON.parse(await readRegularTextFile(input.assessmentPath, "publication assessment")));
+        await validateSubmissionManuscript(input.manuscriptPath);
         const projectRoot = projectDirectory(input.root, project.id);
         const outputRoot = join(projectRoot, "outputs");
         const snapshotValue = await readJsonFile(join(outputRoot, "evidence-snapshot.json"), "Frozen evidence snapshot");
         const snapshotSha256 = verifiedSnapshotSha256(project, snapshotValue);
         const closureValue = await readJsonFile(join(outputRoot, "closure.json"), "Base research closure");
         assertBaseClosure(project, closureValue, snapshotSha256);
+        const submissionBindings = await validateSubmissionBindings(outputRoot, project.id, String(snapshotValue.snapshotId), snapshotSha256, project.publicationPolicy.resolvedPolicySha256);
         const manuscript = await storePublicationObject(input.root, project.id, input.manuscriptPath, "manuscript");
         const assessment = await storePublicationObject(input.root, project.id, input.assessmentPath, "publication-assessment");
         const supplements = [];
         for (const [index, path] of [...new Set(input.supplementPaths)].entries()) {
             supplements.push(await storePublicationObject(input.root, project.id, path, `supplement-${index + 1}`));
         }
+        const declaredSubmissionFiles = input.submissionFiles ?? [];
+        const declaredRoles = declaredSubmissionFiles.map((file) => file.role);
+        const missingSubmissionRoles = REQUIRED_SUBMISSION_ROLES.filter((role) => !declaredRoles.includes(role));
+        if (missingSubmissionRoles.length ||
+            new Set(declaredRoles).size !== declaredRoles.length ||
+            new Set(declaredSubmissionFiles.map((file) => resolve(file.path))).size !==
+                declaredSubmissionFiles.length ||
+            declaredSubmissionFiles.some((file) => !SUBMISSION_ROLES.has(file.role))) {
+            throw publicationError("RESEARCH_PUBLICATION_SUBMISSION_PACKAGE_INVALID", "Submission package roles must be explicit, unique, complete, and bound to distinct files.", 3, { missingSubmissionRoles });
+        }
+        const submissionFiles = [];
+        for (const file of declaredSubmissionFiles.sort((left, right) => left.role.localeCompare(right.role))) {
+            submissionFiles.push({
+                role: file.role,
+                ...(await storePublicationObject(input.root, project.id, file.path, `submission-${file.role}`)),
+            });
+        }
         const evidenceSnapshot = await storePublicationObject(input.root, project.id, join(outputRoot, "evidence-snapshot.json"), "evidence-snapshot", true);
         const baseResearch = {
             closure: await storePublicationObject(input.root, project.id, join(outputRoot, "closure.json"), "base-closure", true),
             analysis: await storePublicationObject(input.root, project.id, join(outputRoot, "analysis.json"), "analysis", true),
             report: await storePublicationObject(input.root, project.id, join(outputRoot, "report.md"), "research-report", true),
         };
+        const contentSnapshot = await storePublicationObject(input.root, project.id, join(outputRoot, "content-snapshot.json"), "content-snapshot", true);
+        const inferenceSnapshot = await storePublicationObject(input.root, project.id, join(outputRoot, "inference-snapshot.json"), "inference-snapshot", true);
+        const claimEvidenceGraph = await storePublicationObject(input.root, project.id, join(outputRoot, "claim-evidence-graph.json"), "claim-evidence-graph", true);
+        const analysisValue = submissionBindings.analysis;
+        const reproducibilityPath = join(outputRoot, "submission-reproducibility.json");
+        await writeJsonAtomic(reproducibilityPath, {
+            schemaVersion: 1,
+            kind: "tiangong-submission-reproducibility",
+            projectId: project.id,
+            analysisRun: isObject(analysisValue.analysisRun) ? analysisValue.analysisRun : null,
+            bindings: {
+                evidenceSnapshotSha256: evidenceSnapshot.sha256,
+                contentSnapshotSha256: contentSnapshot.sha256,
+                inferenceSnapshotSha256: inferenceSnapshot.sha256,
+                claimEvidenceGraphSha256: claimEvidenceGraph.sha256,
+                analysisSha256: baseResearch.analysis.sha256,
+            },
+        });
+        const reproducibilityManifest = await storePublicationObject(input.root, project.id, reproducibilityPath, "reproducibility-manifest", true);
+        const submissionPackageCore = {
+            schemaVersion: 1,
+            requiredRoles: REQUIRED_SUBMISSION_ROLES,
+            files: submissionFiles,
+            contentSnapshot,
+            inferenceSnapshot,
+            claimEvidenceGraph,
+            reproducibilityManifest,
+        };
+        const submissionPackage = {
+            ...submissionPackageCore,
+            packageSha256: sha256Text(canonicalJson(submissionPackageCore)),
+        };
         const assessmentResult = evaluateTopJournalAssessment({
             policy: project.publicationPolicy,
             evidenceSnapshot: snapshotValue,
@@ -268,6 +340,7 @@ export async function freezePublicationManuscript(input) {
             manuscript,
             assessment,
             supplements,
+            submissionPackage,
             assessmentResult,
             requiredReviewRoles: requiredReviewRoles(project.publicationPolicy),
         };
@@ -289,6 +362,7 @@ export async function freezePublicationManuscript(input) {
             manuscriptSha256: manuscript.sha256,
             assessmentSha256: assessment.sha256,
             evidenceSnapshotSha256: snapshotSha256,
+            submissionPackageSha256: submissionPackage.packageSha256,
             policySha256: project.publicationPolicy.resolvedPolicySha256,
             producerAgent: input.producerAgent,
             mechanicalIssueCodes: assessmentResult.issueCodes,
@@ -300,6 +374,16 @@ export async function preparePublicationReview(input) {
     return withWorkspaceLock(input.root, "research.publication.review.prepare", async () => {
         const project = await requireClosedTopJournalProject(input.root, input.projectId);
         const generation = await loadCurrentGeneration(input.root, project.id);
+        const config = await loadWorkspaceConfig(input.root);
+        if (input.reviewerAgent === generation.producer.agent) {
+            throw publicationError("RESEARCH_PUBLICATION_REVIEW_NOT_INDEPENDENT", "Publication review must use a different agent family from the native producer.");
+        }
+        if (config.reviewer.agent !== input.reviewerAgent) {
+            throw publicationError("RESEARCH_PUBLICATION_REVIEWER_MISMATCH", "Publication review must use the configured independent reviewer route.", 3, {
+                configuredReviewer: config.reviewer.agent,
+                requestedReviewer: input.reviewerAgent,
+            });
+        }
         const sessionId = requireSessionId(input.reviewerSessionId, "reviewer");
         if (!generation.requiredReviewRoles.includes(input.role)) {
             throw publicationError("RESEARCH_PUBLICATION_REVIEW_ROLE_INVALID", `The ${input.role} review is not declared by the approved policy.`, 2);
@@ -342,6 +426,7 @@ export async function preparePublicationReview(input) {
             manuscript: generation.manuscript,
             assessment: generation.assessment,
             supplements: generation.supplements,
+            submissionPackage: generation.submissionPackage,
             mechanicalAssessment: generation.assessmentResult,
             instructions: reviewInstructions(input.role),
         };
@@ -407,6 +492,11 @@ export async function inspectPublicationStatus(root, projectId) {
             projectId,
             generationSha256: null,
             manuscriptSha256: null,
+            submissionPackageSha256: null,
+            submissionRoles: [],
+            contentSnapshotSha256: null,
+            inferenceSnapshotSha256: null,
+            claimEvidenceGraphSha256: null,
             generationStatus: "waiting-for-base-research",
             reviewState: "not-started",
             requiredReviewRoles: requiredReviewRoles(project.publicationPolicy),
@@ -425,6 +515,11 @@ export async function inspectPublicationStatus(root, projectId) {
             projectId,
             generationSha256: null,
             manuscriptSha256: null,
+            submissionPackageSha256: null,
+            submissionRoles: [],
+            contentSnapshotSha256: null,
+            inferenceSnapshotSha256: null,
+            claimEvidenceGraphSha256: null,
             generationStatus: "not-started",
             reviewState: "not-started",
             requiredReviewRoles: REQUIRED_REVIEW_ROLES,
@@ -456,6 +551,11 @@ export async function inspectPublicationStatus(root, projectId) {
         projectId,
         generationSha256: generation.generationSha256,
         manuscriptSha256: generation.manuscript.sha256,
+        submissionPackageSha256: generation.submissionPackage.packageSha256,
+        submissionRoles: generation.submissionPackage.files.map((file) => file.role),
+        contentSnapshotSha256: generation.submissionPackage.contentSnapshot.sha256,
+        inferenceSnapshotSha256: generation.submissionPackage.inferenceSnapshot.sha256,
+        claimEvidenceGraphSha256: generation.submissionPackage.claimEvidenceGraph.sha256,
         generationStatus: "manuscript-frozen",
         reviewState,
         requiredReviewRoles: generation.requiredReviewRoles,
@@ -495,6 +595,7 @@ export async function closePublication(root, projectId) {
             manuscript: generation.manuscript,
             assessment: generation.assessment,
             supplements: generation.supplements,
+            submissionPackage: generation.submissionPackage,
             reviews: reviews.map((entry) => ({
                 role: entry.role,
                 packetSha256: entry.packet.packetSha256,
@@ -566,6 +667,197 @@ function assertBaseClosure(project, closure, snapshotSha256) {
         throw publicationError("RESEARCH_PUBLICATION_BINDING_INVALID", "The base research closure does not bind the current evidence snapshot and approved policy.");
     }
 }
+async function validateSubmissionManuscript(path) {
+    const canonical = requireAbsolutePath(path, "manuscript");
+    if (![".md", ".txt"].includes(extname(canonical).toLowerCase())) {
+        throw publicationError("RESEARCH_PUBLICATION_MANUSCRIPT_INCOMPLETE", "The submission manuscript source must be Markdown or plain text for deterministic section validation.", 3);
+    }
+    const content = await readRegularTextFile(canonical, "submission manuscript");
+    const headings = [...content.matchAll(/^#{1,6}\s+(.+?)\s*$/gmu)].map((match) => (match[1] ?? "")
+        .trim()
+        .toLowerCase()
+        .replaceAll(/[^a-z0-9]+/gu, " ")
+        .trim());
+    const required = [
+        { id: "abstract", aliases: ["abstract"] },
+        { id: "introduction", aliases: ["introduction"] },
+        { id: "methods", aliases: ["methods", "materials and methods"] },
+        { id: "results", aliases: ["results"] },
+        { id: "discussion", aliases: ["discussion"] },
+        { id: "data-availability", aliases: ["data availability", "data availability statement"] },
+        { id: "code-availability", aliases: ["code availability", "code availability statement"] },
+        { id: "references", aliases: ["references", "bibliography"] },
+    ];
+    const missingSections = required
+        .filter((section) => !section.aliases.some((alias) => headings.includes(alias)))
+        .map((section) => section.id);
+    if (missingSections.length) {
+        throw publicationError("RESEARCH_PUBLICATION_MANUSCRIPT_INCOMPLETE", "The manuscript is missing required submission sections.", 3, { missingSections });
+    }
+}
+async function validateSubmissionBindings(outputRoot, projectId, evidenceSnapshotId, evidenceSnapshotSha256, policySha256) {
+    const [content, inference, analysis, graph] = await Promise.all([
+        readJsonFile(join(outputRoot, "content-snapshot.json"), "Frozen content snapshot"),
+        readJsonFile(join(outputRoot, "inference-snapshot.json"), "Frozen inference snapshot"),
+        readJsonFile(join(outputRoot, "analysis.json"), "Frozen analysis"),
+        readJsonFile(join(outputRoot, "claim-evidence-graph.json"), "Frozen Claim-Evidence Graph"),
+    ]);
+    const contentGate = isObject(content.gate) ? content.gate : {};
+    const inferenceGate = isObject(inference.gate) ? inference.gate : {};
+    const acquisition = isObject(inference.acquisitionSnapshot) ? inference.acquisitionSnapshot : {};
+    const contentBinding = isObject(inference.contentSnapshot) ? inference.contentSnapshot : {};
+    const graphNodes = Array.isArray(graph.nodes) ? graph.nodes.filter(isObject) : [];
+    const graphEdges = Array.isArray(graph.edges) ? graph.edges.filter(isObject) : [];
+    const contentAtoms = Array.isArray(content.atoms) ? content.atoms.filter(isObject) : [];
+    const inferenceAtoms = Array.isArray(inference.atoms) ? inference.atoms.filter(isObject) : [];
+    const inferenceSources = Array.isArray(inference.sources)
+        ? inference.sources.filter(isObject)
+        : [];
+    const inferenceClaims = Array.isArray(inference.claims) ? inference.claims.filter(isObject) : [];
+    const findings = Array.isArray(analysis.findings) ? analysis.findings.filter(isObject) : [];
+    const analysisRun = isObject(analysis.analysisRun) ? analysis.analysisRun : {};
+    const nodeById = new Map(graphNodes.flatMap((node) => typeof node.id === "string"
+        ? [[node.id, node]]
+        : []));
+    const edgeBindings = new Set(graphEdges.flatMap((edge) => typeof edge.type === "string" && typeof edge.from === "string" && typeof edge.to === "string"
+        ? [`${edge.type}:${edge.from}:${edge.to}`]
+        : []));
+    if (!hashBoundSnapshot(content, "snapshotSha256") ||
+        !hashBoundSnapshot(inference, "snapshotSha256") ||
+        !hashBoundSnapshot(graph, "graphSha256") ||
+        content.kind !== "tiangong-evidence-content-snapshot" ||
+        content.projectId !== projectId ||
+        content.acquisitionSnapshotId !== evidenceSnapshotId ||
+        content.acquisitionSnapshotSha256 !== evidenceSnapshotSha256 ||
+        contentGate.decision !== "pass" ||
+        inference.kind !== "tiangong-inference-snapshot" ||
+        inference.projectId !== projectId ||
+        inferenceGate.decision !== "pass" ||
+        acquisition.snapshotId !== evidenceSnapshotId ||
+        acquisition.snapshotSha256 !== evidenceSnapshotSha256 ||
+        contentBinding.snapshotId !== content.snapshotId ||
+        contentBinding.snapshotSha256 !== content.snapshotSha256 ||
+        canonicalJson(inferenceAtoms) !== canonicalJson(contentAtoms) ||
+        inference.policySha256 !== policySha256 ||
+        analysis.schemaVersion !== 2 ||
+        analysis.inferenceSnapshotSha256 !== inference.snapshotSha256 ||
+        analysisRun.status !== "reproduced" ||
+        typeof analysisRun.id !== "string" ||
+        findings.length === 0 ||
+        graph.kind !== "tiangong-claim-evidence-graph" ||
+        graph.projectId !== projectId ||
+        graph.inferenceSnapshotSha256 !== inference.snapshotSha256 ||
+        graph.analysisSha256 !== (await sha256File(join(outputRoot, "analysis.json"))) ||
+        graph.analysisRunId !== analysisRun.id ||
+        nodeById.size !== graphNodes.length ||
+        new Set(graphEdges.flatMap((edge) => (typeof edge.id === "string" ? [edge.id] : []))).size !==
+            graphEdges.length ||
+        graphEdges.some((edge) => typeof edge.from !== "string" ||
+            typeof edge.to !== "string" ||
+            !nodeById.has(edge.from) ||
+            !nodeById.has(edge.to)) ||
+        !validClaimEvidenceTopology({
+            findings,
+            analysisRunId: analysisRun.id,
+            atoms: inferenceAtoms,
+            sources: inferenceSources,
+            claims: inferenceClaims,
+            nodeById,
+            edgeBindings,
+        })) {
+        throw publicationError("RESEARCH_PUBLICATION_SUBMISSION_BINDING_INVALID", "The submission package does not bind passing content/inference gates, a reproduced analysis, and a complete Claim–Evidence Graph.", 3);
+    }
+    return { analysis };
+}
+function hashBoundSnapshot(value, hashKey) {
+    const recorded = value[hashKey];
+    if (typeof recorded !== "string" || !/^[a-f0-9]{64}$/u.test(recorded))
+        return false;
+    const core = { ...value };
+    delete core[hashKey];
+    return sha256Text(canonicalJson(core)) === recorded;
+}
+function validClaimEvidenceTopology(input) {
+    const atomById = objectMap(input.atoms, "atomId");
+    const sourceById = objectMap(input.sources, "id");
+    const claimById = objectMap(input.claims, "id");
+    const runNodeId = `analysis-run:${input.analysisRunId}`;
+    const runNode = input.nodeById.get(runNodeId);
+    if (!runNode || runNode.type !== "analysis-run" || runNode.label !== input.analysisRunId) {
+        return false;
+    }
+    for (const finding of input.findings) {
+        if (typeof finding.id !== "string" ||
+            typeof finding.statement !== "string" ||
+            !nonEmptyStringArray(finding.evidence) ||
+            !nonEmptyStringArray(finding.evidenceAtomIds) ||
+            !nonEmptyStringArray(finding.claimIds)) {
+            return false;
+        }
+        const findingNodeId = `finding:${finding.id}`;
+        const findingNode = input.nodeById.get(findingNodeId);
+        if (!findingNode ||
+            findingNode.type !== "finding" ||
+            findingNode.label !== finding.statement ||
+            findingNode.sha256 !== sha256Text(canonicalJson(finding)) ||
+            !input.edgeBindings.has(`finding-produced-by-analysis-run:${findingNodeId}:${runNodeId}`)) {
+            return false;
+        }
+        const atomSourceIds = new Set();
+        for (const atomId of finding.evidenceAtomIds) {
+            const atom = atomById.get(atomId);
+            if (!atom ||
+                typeof atom.sourceId !== "string" ||
+                typeof atom.statement !== "string" ||
+                typeof atom.atomSha256 !== "string") {
+                return false;
+            }
+            const source = sourceById.get(atom.sourceId);
+            const atomNodeId = `atom:${atomId}`;
+            const sourceNodeId = `source:${atom.sourceId}`;
+            const atomNode = input.nodeById.get(atomNodeId);
+            const sourceNode = input.nodeById.get(sourceNodeId);
+            if (!source ||
+                !atomNode ||
+                atomNode.type !== "atom" ||
+                atomNode.label !== atom.statement ||
+                atomNode.sha256 !== atom.atomSha256 ||
+                !sourceNode ||
+                sourceNode.type !== "source" ||
+                sourceNode.label !== atom.sourceId ||
+                sourceNode.sha256 !== sha256Text(canonicalJson(source)) ||
+                !input.edgeBindings.has(`finding-supported-by-atom:${findingNodeId}:${atomNodeId}`) ||
+                !input.edgeBindings.has(`atom-derived-from-source:${atomNodeId}:${sourceNodeId}`)) {
+                return false;
+            }
+            atomSourceIds.add(atom.sourceId);
+        }
+        if (finding.evidence.some((sourceId) => !atomSourceIds.has(sourceId)))
+            return false;
+        for (const claimId of finding.claimIds) {
+            const claim = claimById.get(claimId);
+            const claimNodeId = `design-claim:${claimId}`;
+            const claimNode = input.nodeById.get(claimNodeId);
+            if (!claim ||
+                !claimNode ||
+                claimNode.type !== "design-claim" ||
+                claimNode.label !== (typeof claim.statement === "string" ? claim.statement : claimId) ||
+                claimNode.sha256 !== sha256Text(canonicalJson(claim)) ||
+                !input.edgeBindings.has(`finding-addresses-design-claim:${findingNodeId}:${claimNodeId}`)) {
+                return false;
+            }
+        }
+    }
+    return true;
+}
+function objectMap(values, idKey) {
+    return new Map(values.flatMap((value) => typeof value[idKey] === "string"
+        ? [[value[idKey], value]]
+        : []));
+}
+function nonEmptyStringArray(value) {
+    return (Array.isArray(value) && value.length > 0 && value.every((item) => typeof item === "string"));
+}
 function policySummary(policy) {
     return {
         projectId: policy.projectId,
@@ -626,13 +918,27 @@ async function loadCurrentGeneration(root, projectId) {
     if (generation.kind !== "tiangong-publication-generation" ||
         generation.projectId !== projectId ||
         !isObject(generation.producer) ||
-        !["codex", "claude"].includes(String(generation.producer.agent)) ||
+        !["codex", "claude", "workbuddy", "codebuddy"].includes(String(generation.producer.agent)) ||
         typeof generation.producer.sessionSha256 !== "string" ||
         !/^[a-f0-9]{64}$/.test(generation.producer.sessionSha256) ||
         generationSha256 !== pointer.generationSha256 ||
         sha256Text(canonicalJson(withoutHash)) !== generationSha256) {
         throw publicationError("RESEARCH_PUBLICATION_STATE_INVALID", "The publication generation failed its content hash binding.");
     }
+    if (!isObject(generation.submissionPackage) ||
+        generation.submissionPackage.schemaVersion !== 1 ||
+        !Array.isArray(generation.submissionPackage.requiredRoles) ||
+        !Array.isArray(generation.submissionPackage.files) ||
+        generation.submissionPackage.requiredRoles.some((role) => !REQUIRED_SUBMISSION_ROLES.includes(role)) ||
+        REQUIRED_SUBMISSION_ROLES.some((role) => !generation.submissionPackage.requiredRoles.includes(role)) ||
+        generation.submissionPackage.files.some((file) => !isObject(file) || !SUBMISSION_ROLES.has(file.role)) ||
+        typeof generation.submissionPackage.packageSha256 !== "string") {
+        throw publicationError("RESEARCH_PUBLICATION_STATE_INVALID", "The publication submission package is invalid.");
+    }
+    const { packageSha256, ...submissionPackageCore } = generation.submissionPackage;
+    if (sha256Text(canonicalJson(submissionPackageCore)) !== packageSha256) {
+        throw publicationError("RESEARCH_PUBLICATION_STATE_INVALID", "The publication submission package hash binding is invalid.");
+    }
     await verifyFrozenFiles(root, projectId, [
         generation.manuscript,
         generation.assessment,
@@ -641,6 +947,11 @@ async function loadCurrentGeneration(root, projectId) {
         generation.baseResearch.analysis,
         generation.baseResearch.report,
         ...generation.supplements,
+        ...generation.submissionPackage.files,
+        generation.submissionPackage.contentSnapshot,
+        generation.submissionPackage.inferenceSnapshot,
+        generation.submissionPackage.claimEvidenceGraph,
+        generation.submissionPackage.reproducibilityManifest,
     ]);
     return generation;
 }
@@ -890,7 +1201,7 @@ function boundedStatement(verdict) {
 }
 function reviewInstructions(role) {
     return [
-        "Review only the exact content-addressed manuscript, supplements, evidence snapshot, base research outputs, and policy in this packet.",
+        "Review only the exact content-addressed manuscript, role-complete submission package, evidence and inference snapshots, Claim–Evidence Graph, reproducibility manifest, base research outputs, and policy in this packet.",
         "Use a fresh independent reviewer session; do not inherit producer reasoning or an earlier manuscript review.",
         "Do not upgrade the mechanical assessment or policy verdict ceiling.",
         role === "journal-editor"