@tiangong-ai/cli 0.0.41 → 0.0.43

package/dist/research/workspace/audit-bundle.js

@@ -4,11 +4,15 @@ import { chmod, copyFile, lstat, mkdir, readFile, rename, rm } from "node:fs/pro
 import { basename, dirname, isAbsolute, join, relative, resolve, sep } from "node:path";
 import { CliError } from "../../errors.js";
 import { loadEvidenceArtifactRecords } from "./artifacts.js";
+import { loadCurrentEvidenceSnapshot } from "./acquisition.js";
 import { verifyCapabilities } from "./capabilities.js";
+import { loadCurrentEvidenceContentSnapshot } from "./content-evidence.js";
 import { loadProjectEvidenceReceipts } from "./evidence.js";
+import { loadCurrentClaimEvidenceGraph, loadCurrentInferenceSnapshot } from "./inference.js";
 import { readJournal, verifyJournal } from "./journal.js";
 import { loadProject } from "./projects.js";
-import { sanitizeResearchText } from "./sanitization.js";
+import { inspectPublicationStatus } from "./publication-workflow.js";
+import { sanitizeResearchText, sanitizeResearchValue } from "./sanitization.js";
 import { canonicalJson, ensureDirectory, isObject, pathExists, readJsonFile, regularTreeFiles, resolveContained, safeRelativePath, sha256File, sha256Text, workspacePaths, writeJsonAtomic, } from "./storage.js";
 import { loadWorkspaceConfig, withWorkspaceLock } from "./workspace.js";
 const SHA256 = /^[a-f0-9]{64}$/;
@@ -38,6 +42,7 @@ export async function exportProjectAuditBundle(input) {
                 staged.add(logical);
             };
             const projectRoot = join(paths.projects, project.id);
+            const researchChain = await loadVerifiedResearchChain(input.root, project);
             const projectFiles = await regularTreeFiles(projectRoot).catch((error) => {
                 throw auditError("Project tree contains a non-portable entry.", error);
             });
@@ -95,7 +100,9 @@ export async function exportProjectAuditBundle(input) {
             await writeJsonAtomic(join(temporary, "state", "journal-event-proofs.json"), {
                 schemaVersion: 1,
                 workspaceJournalHead: journal.head,
-                events: journalEvents.filter((event) => event.scope === project.id || containsExactString(event.payload, project.id)),
+                events: journalEvents
+                    .filter((event) => event.scope === project.id || containsExactString(event.payload, project.id))
+                    .map(portableJournalEvent),
             }, 0o444);
             staged.add("state/journal-event-proofs.json");
             await assertPortableTextFiles(temporary, resolve(input.root));
@@ -123,6 +130,7 @@ export async function exportProjectAuditBundle(input) {
                     capabilityLockSha256,
                     sourceWorkspacePathSha256: sha256Text(resolve(input.root)),
                 },
+                researchChain,
                 locatorRoots: {
                     project: "project",
                     workspaceObjects: "workspace-objects",
@@ -152,6 +160,62 @@ export async function exportProjectAuditBundle(input) {
         }
     });
 }
+function portableJournalEvent(event) {
+    const onceSanitized = sanitizeResearchValue(event.payload);
+    const payload = JSON.parse(sanitizeResearchText(JSON.stringify(onceSanitized)));
+    return {
+        schemaVersion: 1,
+        sequence: event.sequence,
+        timestamp: event.timestamp,
+        type: event.type,
+        scope: event.scope,
+        payload,
+        sourcePayloadSha256: sha256Text(canonicalJson(event.payload)),
+        sourcePreviousHash: event.previousHash,
+        sourceEventHash: event.hash,
+    };
+}
+async function loadVerifiedResearchChain(root, project) {
+    const projectRoot = join(workspacePaths(root).projects, project.id);
+    const outputPath = (name) => join(projectRoot, "outputs", name);
+    const acquisition = (await pathExists(outputPath("evidence-snapshot.json")))
+        ? await loadCurrentEvidenceSnapshot(root, project.id)
+        : null;
+    const content = (await pathExists(outputPath("content-snapshot.json")))
+        ? await loadCurrentEvidenceContentSnapshot(root, project.id)
+        : null;
+    const inference = (await pathExists(outputPath("inference-snapshot.json")))
+        ? await loadCurrentInferenceSnapshot(root, project.id)
+        : null;
+    const graph = (await pathExists(outputPath("claim-evidence-graph.json")))
+        ? await loadCurrentClaimEvidenceGraph(root, project.id)
+        : null;
+    const publicationCurrent = join(projectRoot, "publication", "current.json");
+    const publication = (await pathExists(publicationCurrent))
+        ? await inspectPublicationStatus(root, project.id)
+        : null;
+    return {
+        acquisitionSnapshot: acquisition
+            ? { id: acquisition.snapshotId, sha256: acquisition.snapshotSha256 }
+            : null,
+        contentSnapshot: content ? { id: content.snapshotId, sha256: content.snapshotSha256 } : null,
+        inferenceSnapshot: inference
+            ? { id: inference.snapshotId, sha256: inference.snapshotSha256 }
+            : null,
+        analysisRun: graph ? { id: graph.analysisRunId, sha256: graph.analysisSha256 } : null,
+        claimEvidenceGraph: graph ? { id: graph.graphId, sha256: graph.graphSha256 } : null,
+        publication: publication?.generationSha256 &&
+            publication.manuscriptSha256 &&
+            publication.submissionPackageSha256
+            ? {
+                generationSha256: publication.generationSha256,
+                manuscriptSha256: publication.manuscriptSha256,
+                submissionPackageSha256: publication.submissionPackageSha256,
+                closureSha256: publication.closureSha256,
+            }
+            : null,
+    };
+}
 export async function verifyProjectAuditBundle(bundlePath) {
     if (!isAbsolute(bundlePath) || resolve(bundlePath) !== bundlePath) {
         throw auditPathError("Audit bundle path must be absolute and normalized.");
@@ -259,7 +323,7 @@ async function assertPortableTextFiles(root, forbiddenRoot) {
             });
         }
         if (sanitizeResearchText(text) !== text) {
-            throw new CliError("Audit bundle contains credential-like or sensitive text.", {
+            throw new CliError(`Audit bundle contains credential-like or sensitive text in ${relative(root, path).split(sep).join("/")}.`, {
                 code: "RESEARCH_AUDIT_BUNDLE_SENSITIVE",
                 exitCode: 3,
             });
@@ -296,6 +360,7 @@ function parseManifest(value) {
         typeof value.createdAt !== "string" ||
         !isObject(value.authority) ||
         !isObject(value.sourceBindings) ||
+        !validResearchChain(value.researchChain) ||
         !isObject(value.locatorRoots) ||
         value.locatorRoots.project !== "project" ||
         value.locatorRoots.workspaceObjects !== "workspace-objects" ||
@@ -324,6 +389,37 @@ function parseManifest(value) {
     }
     return value;
 }
+function validResearchChain(value) {
+    if (!isObject(value))
+        return false;
+    for (const key of [
+        "acquisitionSnapshot",
+        "contentSnapshot",
+        "inferenceSnapshot",
+        "analysisRun",
+        "claimEvidenceGraph",
+    ]) {
+        const binding = value[key];
+        if (binding !== null &&
+            (!isObject(binding) ||
+                typeof binding.id !== "string" ||
+                typeof binding.sha256 !== "string" ||
+                !SHA256.test(binding.sha256))) {
+            return false;
+        }
+    }
+    const publication = value.publication;
+    return (publication === null ||
+        (isObject(publication) &&
+            typeof publication.generationSha256 === "string" &&
+            SHA256.test(publication.generationSha256) &&
+            typeof publication.manuscriptSha256 === "string" &&
+            SHA256.test(publication.manuscriptSha256) &&
+            typeof publication.submissionPackageSha256 === "string" &&
+            SHA256.test(publication.submissionPackageSha256) &&
+            (publication.closureSha256 === null ||
+                (typeof publication.closureSha256 === "string" && SHA256.test(publication.closureSha256)))));
+}
 function safePathOrNull(value) {
     try {
         return safeRelativePath(value, "Audit manifest path");

package/dist/research/workspace/audit-bundle.js.map

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package/dist/research/workspace/content-evidence.d.ts

@@ -0,0 +1,98 @@
+export interface ArtifactDecompositionRecord {
+    schemaVersion: 1;
+    decompositionId: string;
+    decompositionSha256: string;
+    projectId: string;
+    candidateId: string;
+    sourceArtifactId: string;
+    sourceArtifactSha256: string;
+    status: "complete" | "limited" | "failed";
+    parser: {
+        id: string;
+        version: string;
+    };
+    outputArtifactIds: string[];
+    outputArtifactSha256s: string[];
+    contentClasses: string[];
+    limitations: string[];
+    recordedAt: string;
+}
+export interface EvidenceAtomRecord {
+    schemaVersion: 1;
+    atomId: string;
+    atomSha256: string;
+    projectId: string;
+    sourceId: string;
+    candidateId: string;
+    artifactId: string;
+    artifactSha256: string;
+    locator: {
+        kind: "line-range";
+        startLine: number;
+        endLine: number;
+    } | {
+        kind: "json-pointer";
+        pointer: string;
+    };
+    excerpt: string;
+    excerptSha256: string;
+    statement: string;
+    evidenceRoleIds: string[];
+    coverageDimensionIds: string[];
+    evidenceFunction: string;
+    scope: string;
+    limitations: string[];
+    registeredAt: string;
+}
+export interface EvidenceContentSnapshot {
+    schemaVersion: 1;
+    kind: "tiangong-evidence-content-snapshot";
+    snapshotId: string;
+    snapshotSha256: string;
+    projectId: string;
+    acquisitionSnapshotId: string;
+    acquisitionSnapshotSha256: string;
+    createdAt: string;
+    ledgerHead: string;
+    decompositions: ArtifactDecompositionRecord[];
+    atoms: EvidenceAtomRecord[];
+    sourceCoverage: Array<{
+        sourceId: string;
+        atomIds: string[];
+        evidenceRoleIds: string[];
+        coverageDimensionIds: string[];
+        evidenceFunctions: string[];
+    }>;
+    roleCoverage: Array<{
+        roleId: string;
+        sourceIds: string[];
+        fullTextSourceIds: string[];
+        datedSourceIds: string[];
+        coverageDimensionIds: string[];
+        sourceTypes: string[];
+        decision: "pass" | "insufficient";
+        gaps: string[];
+    }>;
+    gate: {
+        decision: "pass" | "stop";
+        reasons: string[];
+        requiredDecompositionArtifactIds: string[];
+        missingDecompositionArtifactIds: string[];
+        acceptedFullTextSourceIds: string[];
+        sourcesWithoutAtoms: string[];
+    };
+}
+export declare function recordArtifactDecomposition(input: {
+    root: string;
+    projectId: string;
+    value: Record<string, unknown>;
+}): Promise<ArtifactDecompositionRecord>;
+export declare function registerEvidenceAtom(input: {
+    root: string;
+    projectId: string;
+    value: Record<string, unknown>;
+}): Promise<EvidenceAtomRecord>;
+export declare function freezeEvidenceContentSnapshot(root: string, projectId: string): Promise<EvidenceContentSnapshot>;
+export declare function loadCurrentEvidenceContentSnapshot(root: string, projectId: string): Promise<EvidenceContentSnapshot>;
+export declare function loadDecompositionRecords(root: string, projectId: string): Promise<ArtifactDecompositionRecord[]>;
+export declare function loadEvidenceAtomRecords(root: string, projectId: string): Promise<EvidenceAtomRecord[]>;