@thoughtflow/core 0.1.2

package/dist/tools/neural/neural-security.tool.js

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+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.NeuralSecurityTool = void 0;
+const zod_1 = require("zod");
+const tool_base_class_1 = require("../base/tool-base.class");
+const explorer_1 = require("../../libs/codebase/indexer/explorer");
+const fs = __importStar(require("node:fs"));
+const SecurityIssueSchema = zod_1.z.object({
+    severity: zod_1.z.enum(["critical", "high", "medium", "low"]),
+    cwe: zod_1.z.string(),
+    category: zod_1.z.string(),
+    message: zod_1.z.string(),
+    remediation: zod_1.z.string(),
+});
+const SecurityResultSchema = zod_1.z.object({
+    summary: zod_1.z.string(),
+    findings: zod_1.z.array(SecurityIssueSchema),
+    riskLevel: zod_1.z.enum(["critical", "high", "medium", "low", "none"]),
+});
+class NeuralSecurityTool extends tool_base_class_1.ToolBase {
+    name = "neuralSecurity";
+    description = "Scan source code for security vulnerabilities: hardcoded secrets, injection risks, unsafe crypto, XSS, CSRF, path traversal. LLM-powered deep analysis with CWE references.";
+    readonly = true;
+    constructor() {
+        super(zod_1.z.object({
+            target: zod_1.z.string().optional().describe("File or directory to scan"),
+            scope: zod_1.z.enum(["all", "secrets", "injection", "crypto", "xss", "auth"]).optional(),
+            projectPath: zod_1.z.string().optional(),
+        }));
+    }
+    async run(input, ctx) {
+        const rootPath = input.projectPath ?? process.cwd();
+        const scope = input.scope ?? "all";
+        const target = input.target || undefined;
+        const explorer = new explorer_1.CodebaseExplorer();
+        const files = explorer.explore({ rootPath });
+        const scanFiles = target
+            ? files.filter((f) => f.relativePath.includes(target) || f.absolutePath.includes(target))
+            : files.filter((f) => f.classification === "source-code" || f.classification === "config");
+        const staticFindings = [];
+        for (const file of scanFiles.slice(0, 100)) {
+            try {
+                const content = fs.readFileSync(file.absolutePath, "utf8");
+                const lines = content.split("\n");
+                for (let i = 0; i < lines.length; i++) {
+                    const line = lines[i];
+                    if (scope === "all" || scope === "secrets")
+                        this.scanSecrets(line, file.relativePath, i + 1, staticFindings);
+                    if (scope === "all" || scope === "injection")
+                        this.scanInjection(line, file.relativePath, i + 1, staticFindings);
+                    if (scope === "all" || scope === "crypto")
+                        this.scanCrypto(line, file.relativePath, i + 1, staticFindings);
+                    if (scope === "all" || scope === "xss")
+                        this.scanXss(line, file.relativePath, i + 1, staticFindings);
+                    if (scope === "all" || scope === "auth")
+                        this.scanAuth(line, file.relativePath, i + 1, content, staticFindings);
+                }
+            }
+            catch {
+                continue;
+            }
+        }
+        const cs = ctx.conversation?.callStructured;
+        if (!cs) {
+            const severityCounts = this.countBySeverity(staticFindings);
+            return {
+                success: true,
+                output: JSON.stringify({
+                    summary: `Static scan: ${staticFindings.length} findings across ${scanFiles.length} files`,
+                    filesScanned: scanFiles.length,
+                    severityCounts,
+                    findings: staticFindings.slice(0, 30),
+                    riskLevel: this.computeRiskLevel(staticFindings),
+                }),
+            };
+        }
+        const suspiciousFiles = scanFiles.filter((f) => {
+            try {
+                const c = fs.readFileSync(f.absolutePath, "utf8");
+                return c.includes("secret") || c.includes("token") || c.includes("password") || c.includes("eval") || c.includes("innerHTML") || c.includes("sql") || c.includes("crypto");
+            }
+            catch {
+                return false;
+            }
+        }).slice(0, 5);
+        if (suspiciousFiles.length === 0) {
+            const severityCounts = this.countBySeverity(staticFindings);
+            return {
+                success: true,
+                output: JSON.stringify({
+                    summary: "No suspicious files for deep scan",
+                    filesScanned: scanFiles.length,
+                    severityCounts,
+                    findings: staticFindings.slice(0, 30),
+                    riskLevel: this.computeRiskLevel(staticFindings),
+                }),
+            };
+        }
+        const codeSnippets = suspiciousFiles
+            .map((f) => {
+            try {
+                return `=== ${f.relativePath} ===\n${fs.readFileSync(f.absolutePath, "utf8").slice(0, 4000)}`;
+            }
+            catch {
+                return "";
+            }
+        })
+            .filter(Boolean)
+            .join("\n\n");
+        const staticHints = staticFindings
+            .slice(0, 20)
+            .map((f) => `${f.severity.toUpperCase()}: ${f.cwe} - ${f.message}`)
+            .join("\n");
+        const prompt = `You are a security auditor specializing in OWASP Top 10 vulnerabilities. Analyze the provided source code and return structured findings with CWE references, severity ratings, and actionable remediation steps.\n\nScan the following source code for security vulnerabilities. Focus on: ${scope}.\n\nSTATIC SCAN HIGHLIGHTS (use these as hints, but perform your own deeper analysis):\n${staticHints || "No static findings"}\n\nSOURCE CODE:\n${codeSnippets.slice(0, 12000)}`;
+        try {
+            const result = await cs(prompt, SecurityResultSchema);
+            const allFindings = [...staticFindings, ...(result.findings ?? [])];
+            const severityCounts = this.countBySeverity(allFindings);
+            return {
+                success: true,
+                output: JSON.stringify({
+                    summary: result.summary ?? `${allFindings.length} total findings`,
+                    filesScanned: scanFiles.length,
+                    severityCounts,
+                    findings: allFindings.slice(0, 50),
+                    riskLevel: result.riskLevel ?? this.computeRiskLevel(allFindings),
+                }),
+            };
+        }
+        catch {
+            const severityCounts = this.countBySeverity(staticFindings);
+            return {
+                success: true,
+                output: JSON.stringify({
+                    summary: "LLM scan failed — static analysis only",
+                    filesScanned: scanFiles.length,
+                    severityCounts,
+                    findings: staticFindings.slice(0, 30),
+                    riskLevel: this.computeRiskLevel(staticFindings),
+                }),
+            };
+        }
+    }
+    scanSecrets(line, file, lineNum, findings) {
+        if (line.match(/(api[_-]?key|secret|password|token|auth)\s*[:=]\s*['"][^$`{].{6,}['"]/i) && !line.includes("process.env") && !line.includes("import")) {
+            if (!line.trim().startsWith("//") && !line.trim().startsWith("/*")) {
+                findings.push({ severity: "critical", cwe: "CWE-798", category: "secrets", message: `Hardcoded credential in ${file}:${lineNum}`, remediation: "Move to environment variable or secret manager" });
+            }
+        }
+        if (line.match(/['"]((?:sk-[A-Za-z0-9]{20,})|(?:ghp_[A-Za-z0-9]{20,})|(?:xox[bpras]-[A-Za-z0-9-]{10,}))['"]/)) {
+            findings.push({ severity: "critical", cwe: "CWE-798", category: "secrets", message: `API key detected in ${file}:${lineNum}`, remediation: "Use environment variables or a secrets vault — revoke the exposed key immediately" });
+        }
+    }
+    scanInjection(line, file, lineNum, findings) {
+        if (line.match(/eval\s*\(/))
+            findings.push({ severity: "critical", cwe: "CWE-95", category: "injection", message: `eval() usage in ${file}:${lineNum}`, remediation: "Remove eval() — use JSON.parse or safer alternatives" });
+        if (line.match(/exec\s*\(\s*['"`][^'"]*\$\{/))
+            findings.push({ severity: "critical", cwe: "CWE-78", category: "injection", message: `Command injection risk in ${file}:${lineNum}`, remediation: "Use execFile() with argument arrays, or sanitize inputs" });
+        if (line.match(/(?:execute|query|run)\s*\(\s*['"`][^'"]*\$/) && !line.includes("?") && !line.includes("$1")) {
+            findings.push({ severity: "high", cwe: "CWE-89", category: "injection", message: `Potential SQL injection in ${file}:${lineNum}`, remediation: "Use parameterized queries or an ORM with input binding" });
+        }
+        if (line.match(/new Function\s*\(/))
+            findings.push({ severity: "critical", cwe: "CWE-95", category: "injection", message: `new Function() in ${file}:${lineNum}`, remediation: "Avoid new Function() — refactor to use proper logic constructs" });
+        if (line.match(/require\s*\(\s*.+\s*\+\s*.+/) || line.match(/import\s*\(\s*.+\s*\+\s*.+\)/)) {
+            findings.push({ severity: "high", cwe: "CWE-641", category: "injection", message: `Dynamic import with concatenation in ${file}:${lineNum}`, remediation: "Use a static import map instead of dynamic concatenation" });
+        }
+    }
+    scanCrypto(line, file, lineNum, findings) {
+        if (line.match(/Math\.random\s*\(\s*\)/) && (line.includes("token") || line.includes("password") || line.includes("secret") || line.includes("nonce"))) {
+            findings.push({ severity: "high", cwe: "CWE-338", category: "crypto", message: `Math.random() for security in ${file}:${lineNum}`, remediation: "Use crypto.randomBytes() or crypto.randomUUID()" });
+        }
+        if (line.match(/md5|crc32|sha1(?!256|512)/i) && !line.includes("import") && !line.includes("type")) {
+            findings.push({ severity: "medium", cwe: "CWE-328", category: "crypto", message: `Weak hash (MD5/SHA1/CRC32) in ${file}:${lineNum}`, remediation: "Use SHA-256, SHA-512, or bcrypt/scrypt for passwords" });
+        }
+        if (line.match(/crypto\.createCipher\s*\(/) || line.match(/new\s+Cipher\s*\(/)) {
+            findings.push({ severity: "medium", cwe: "CWE-327", category: "crypto", message: `Insecure cipher usage in ${file}:${lineNum}`, remediation: "Use AES-256-GCM or ChaCha20-Poly1305 with authenticated encryption" });
+        }
+    }
+    scanXss(line, file, lineNum, findings) {
+        if (line.match(/innerHTML\s*=|dangerouslySetInnerHTML|v-html/)) {
+            findings.push({ severity: "high", cwe: "CWE-79", category: "xss", message: `Potential XSS in ${file}:${lineNum}`, remediation: "Sanitize input with DOMPurify or use textContent instead" });
+        }
+        if (line.match(/document\.write\s*\(/)) {
+            findings.push({ severity: "high", cwe: "CWE-79", category: "xss", message: `document.write() in ${file}:${lineNum}`, remediation: "Use DOM manipulation methods like appendChild or innerHTML with sanitization" });
+        }
+        if (line.match(/setAttribute\s*\(\s*['"]on\w+['"]/) || line.match(/\.on\w+\s*=\s*/)) {
+            findings.push({ severity: "medium", cwe: "CWE-79", category: "xss", message: `Inline event handler in ${file}:${lineNum}`, remediation: "Use addEventListener instead of inline handlers" });
+        }
+    }
+    scanAuth(line, file, lineNum, content, findings) {
+        if (line.match(/http\.createServer|app\.listen|express\s*\(/) && !line.includes("https")) {
+            if (!content.includes("https") && !content.includes("ssl") && !content.includes("tls") && !content.includes("secure")) {
+                findings.push({ severity: "medium", cwe: "CWE-319", category: "auth", message: `Server without HTTPS in ${file}:${lineNum}`, remediation: "Configure TLS/SSL with a valid certificate" });
+            }
+        }
+        if (line.match(/jwt\.sign\(/) || line.match(/jsonwebtoken\.sign/)) {
+            if (!content.includes("expiresIn") && !content.includes("expires")) {
+                findings.push({ severity: "medium", cwe: "CWE-307", category: "auth", message: `JWT without expiration in ${file}:${lineNum}`, remediation: "Set expiresIn option when signing JWTs" });
+            }
+        }
+    }
+    countBySeverity(findings) {
+        return {
+            critical: findings.filter((f) => f.severity === "critical").length,
+            high: findings.filter((f) => f.severity === "high").length,
+            medium: findings.filter((f) => f.severity === "medium").length,
+            low: findings.filter((f) => f.severity === "low").length,
+        };
+    }
+    computeRiskLevel(findings) {
+        if (findings.some((f) => f.severity === "critical"))
+            return "critical";
+        if (findings.some((f) => f.severity === "high"))
+            return "high";
+        if (findings.some((f) => f.severity === "medium"))
+            return "medium";
+        if (findings.length > 0)
+            return "low";
+        return "none";
+    }
+}
+exports.NeuralSecurityTool = NeuralSecurityTool;
+//# sourceMappingURL=neural-security.tool.js.map

package/dist/tools/neural/neural-security.tool.js.map

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package/dist/tools/neural/neural-similar.tool.d.ts

@@ -0,0 +1,10 @@
+import { ToolBase } from "../base/tool-base.class";
+import { ToolContext, ToolExecutionResult } from "../../contracts";
+export declare class NeuralSimilarTool extends ToolBase {
+    readonly name = "neuralSimilar";
+    readonly description = "Find semantically similar or duplicate code fragments. Uses embeddings to detect copy-pasted code that text-based diff tools would miss.";
+    readonly readonly = true;
+    constructor();
+    run(input: Record<string, unknown>, _ctx: ToolContext): Promise<ToolExecutionResult>;
+}
+//# sourceMappingURL=neural-similar.tool.d.ts.map

package/dist/tools/neural/neural-similar.tool.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"neural-similar.tool.d.ts","sourceRoot":"","sources":["../../../src/tools/neural/neural-similar.tool.ts"],"names":[],"mappings":"AACA,OAAO,EAAE,QAAQ,EAAE,MAAM,yBAAyB,CAAC;AACnD,OAAO,EAAE,WAAW,EAAE,mBAAmB,EAAE,MAAM,iBAAiB,CAAC;AAOnE,qBAAa,iBAAkB,SAAQ,QAAQ;IAC7C,QAAQ,CAAC,IAAI,mBAAmB;IAChC,QAAQ,CAAC,WAAW,8IAA8I;IAClK,SAAkB,QAAQ,QAAQ;;IAW5B,GAAG,CAAC,KAAK,EAAE,MAAM,CAAC,MAAM,EAAE,OAAO,CAAC,EAAE,IAAI,EAAE,WAAW,GAAG,OAAO,CAAC,mBAAmB,CAAC;CA4F3F"}

package/dist/tools/neural/neural-similar.tool.js

@@ -0,0 +1,141 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.NeuralSimilarTool = void 0;
+const zod_1 = require("zod");
+const tool_base_class_1 = require("../base/tool-base.class");
+const memory_vector_store_1 = require("../../storage/vector/memory-vector-store");
+const mock_embedding_1 = require("../../storage/vector/mock-embedding");
+const explorer_1 = require("../../libs/codebase/indexer/explorer");
+const chunker_1 = require("../../libs/codebase/indexer/chunker");
+const fs = __importStar(require("node:fs"));
+class NeuralSimilarTool extends tool_base_class_1.ToolBase {
+    name = "neuralSimilar";
+    description = "Find semantically similar or duplicate code fragments. Uses embeddings to detect copy-pasted code that text-based diff tools would miss.";
+    readonly = true;
+    constructor() {
+        super(zod_1.z.object({
+            target: zod_1.z.string().optional().describe("File to compare against codebase"),
+            projectPath: zod_1.z.string().optional(),
+            threshold: zod_1.z.number().optional().describe("Similarity threshold (0-1, default 0.85)"),
+            limit: zod_1.z.number().optional(),
+        }));
+    }
+    async run(input, _ctx) {
+        const target = input.target || undefined;
+        const rootPath = input.projectPath ?? process.cwd();
+        const threshold = input.threshold ?? 0.85;
+        const limit = input.limit ?? 10;
+        const vectorStore = new memory_vector_store_1.MemoryVectorStore();
+        await vectorStore.initialize();
+        const embedder = new mock_embedding_1.MockEmbeddingProvider();
+        const explorer = new explorer_1.CodebaseExplorer();
+        const files = explorer.explore({ rootPath });
+        const codeFiles = files.filter((f) => f.classification === "source-code" || f.classification === "test");
+        const filesToIndex = codeFiles;
+        const chunker = new chunker_1.CodeChunker();
+        const allChunks = [];
+        const results = [];
+        for (const file of filesToIndex) {
+            const content = fs.readFileSync(file.absolutePath, "utf8");
+            const result = chunker.chunkFile(file, content);
+            for (const chunk of result.chunks) {
+                const vec = await embedder.embedQuery(chunk.text);
+                const id = `${file.relativePath}:${chunk.startLine}-${chunk.endLine}`;
+                await vectorStore.insert([{
+                        id,
+                        vector: vec,
+                        text: chunk.text.slice(0, 500),
+                        metadata: {
+                            projectPath: rootPath,
+                            filePath: file.relativePath,
+                            startLine: chunk.startLine,
+                            endLine: chunk.endLine,
+                            chunkType: "code",
+                        },
+                    }]);
+                allChunks.push({
+                    id,
+                    text: chunk.text,
+                    file: file.relativePath,
+                    lines: [chunk.startLine, chunk.endLine],
+                });
+            }
+        }
+        const pairs = new Set();
+        for (const chunk of allChunks) {
+            const vec = await embedder.embedQuery(chunk.text);
+            const similar = await vectorStore.search(vec, { limit: limit * 2 });
+            for (const match of similar) {
+                if (match.item.id === chunk.id)
+                    continue;
+                if (match.score < threshold)
+                    continue;
+                const pairKey = [chunk.file, match.item.metadata.filePath].sort().join("||") +
+                    "||" +
+                    [chunk.id, match.item.id].sort().join("::");
+                if (pairs.has(pairKey))
+                    continue;
+                pairs.add(pairKey);
+                results.push({
+                    file1: chunk.file,
+                    file2: match.item.metadata.filePath,
+                    lines1: `${chunk.lines[0]}-${chunk.lines[1]}`,
+                    lines2: `${match.item.metadata.startLine}-${match.item.metadata.endLine}`,
+                    score: Math.round(match.score * 100) / 100,
+                    snippet1: chunk.text.slice(0, 100),
+                    snippet2: match.item.text?.slice(0, 100) ?? "",
+                });
+            }
+            if (results.length >= limit)
+                break;
+        }
+        results.sort((a, b) => b.score - a.score);
+        const top = results.slice(0, limit);
+        return {
+            success: true,
+            output: JSON.stringify({
+                filesScanned: codeFiles.length,
+                chunksAnalyzed: allChunks.length,
+                duplicatesFound: top.length,
+                threshold,
+                embeddingModel: embedder.modelName,
+                duplicates: top,
+            }),
+        };
+    }
+}
+exports.NeuralSimilarTool = NeuralSimilarTool;
+//# sourceMappingURL=neural-similar.tool.js.map

package/dist/tools/neural/neural-similar.tool.js.map

@@ -0,0 +1 @@
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package/dist/tools/neural/neural-smells.tool.d.ts

@@ -0,0 +1,10 @@
+import { ToolBase } from "../base/tool-base.class";
+import { ToolContext, ToolExecutionResult } from "../../contracts";
+export declare class NeuralSmellsTool extends ToolBase {
+    readonly name = "neuralSmells";
+    readonly description = "Detect code smells using static analysis and LLM-powered semantic review: God class, long method, feature envy, primitive obsession, switch statements, deep nesting, duplicate code, and more. Returns structured findings with refactoring suggestions.";
+    readonly readonly = true;
+    constructor();
+    run(input: Record<string, unknown>, ctx: ToolContext): Promise<ToolExecutionResult>;
+}
+//# sourceMappingURL=neural-smells.tool.d.ts.map

package/dist/tools/neural/neural-smells.tool.d.ts.map

@@ -0,0 +1 @@
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package/dist/tools/neural/neural-smells.tool.js

@@ -0,0 +1,123 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.NeuralSmellsTool = void 0;
+const zod_1 = require("zod");
+const tool_base_class_1 = require("../base/tool-base.class");
+const explorer_1 = require("../../libs/codebase/indexer/explorer");
+const fs = __importStar(require("node:fs"));
+const SmellSchema = zod_1.z.object({
+    smell: zod_1.z.string(),
+    severity: zod_1.z.enum(["critical", "warning", "info"]),
+    location: zod_1.z.string().optional(),
+    description: zod_1.z.string(),
+    refactoring: zod_1.z.string(),
+});
+class NeuralSmellsTool extends tool_base_class_1.ToolBase {
+    name = "neuralSmells";
+    description = "Detect code smells using static analysis and LLM-powered semantic review: God class, long method, feature envy, primitive obsession, switch statements, deep nesting, duplicate code, and more. Returns structured findings with refactoring suggestions.";
+    readonly = true;
+    constructor() {
+        super(zod_1.z.object({
+            target: zod_1.z.string().optional().describe("File path or leave empty for whole project"),
+            projectPath: zod_1.z.string().optional(),
+            limit: zod_1.z.number().optional().describe("Max smells to return"),
+        }));
+    }
+    async run(input, ctx) {
+        const rootPath = input.projectPath ?? process.cwd();
+        const target = input.target || undefined;
+        const limit = input.limit ?? 15;
+        const explorer = new explorer_1.CodebaseExplorer();
+        const files = explorer.explore({ rootPath });
+        const scanFiles = target
+            ? files.filter((f) => f.relativePath.includes(target)).slice(0, 5)
+            : files.filter((f) => f.classification === "source-code").slice(0, 20);
+        const staticSmells = [];
+        for (const file of scanFiles) {
+            const content = fs.readFileSync(file.absolutePath, "utf8");
+            const lines = content.split("\n");
+            if (lines.length > 500) {
+                staticSmells.push({ smell: "large-file", severity: "warning", file: file.relativePath, line: 1, description: `${lines.length} lines — consider splitting`, refactoring: "Split into smaller modules by concern" });
+            }
+            let maxDepth = 0;
+            let depth = 0;
+            for (const line of lines) {
+                if (line.match(/^\s*(if|for|while|switch)\s*[({]/))
+                    depth++;
+                if (line.trim() === "}" || line.trim() === "});")
+                    depth = Math.max(0, depth - 1);
+                maxDepth = Math.max(maxDepth, depth);
+            }
+            if (maxDepth > 4) {
+                staticSmells.push({ smell: "deep-nesting", severity: "warning", file: file.relativePath, line: 1, description: `Max nesting depth: ${maxDepth}`, refactoring: "Use early returns, guard clauses, or extract to functions" });
+            }
+            const anyCount = (content.match(/\bany\b/g) || []).length;
+            if (anyCount > 10) {
+                staticSmells.push({ smell: "excessive-any", severity: "warning", file: file.relativePath, line: 1, description: `${anyCount} 'any' type usages`, refactoring: "Replace with explicit types or 'unknown'" });
+            }
+        }
+        const cs = ctx.conversation?.callStructured;
+        if (!cs) {
+            return { success: true, output: JSON.stringify({ filesScanned: scanFiles.length, smellsFound: staticSmells.length, smells: staticSmells }) };
+        }
+        const codeSnippets = scanFiles.slice(0, 3).map((f) => {
+            const c = fs.readFileSync(f.absolutePath, "utf8").slice(0, 3000);
+            return `--- ${f.relativePath} ---\n${c}`;
+        }).join("\n\n");
+        if (!codeSnippets) {
+            return { success: true, output: JSON.stringify({ filesScanned: scanFiles.length, smellsFound: staticSmells.length, smells: staticSmells.slice(0, limit) }) };
+        }
+        const prompt = `Analyze this code for design smells: God class, long method, feature envy, primitive obsession, switch statement abuse, refused bequest, shotgun surgery, divergent change, data clumps, lazy class, speculative generality, middle man, inappropriate intimacy, message chains, duplicate code.\n\n${codeSnippets}\n\nReturn structured findings with specific file locations and refactoring suggestions. Be specific about file path and line number.`;
+        try {
+            const result = await cs(prompt, zod_1.z.object({ smells: zod_1.z.array(SmellSchema) }));
+            const llmSmells = (result.smells ?? []).map((s) => ({
+                smell: s.smell,
+                severity: s.severity,
+                file: s.location ?? target ?? "",
+                line: 1,
+                description: s.description,
+                refactoring: s.refactoring,
+            }));
+            const allSmells = [...staticSmells, ...llmSmells];
+            return { success: true, output: JSON.stringify({ filesScanned: scanFiles.length, smellsFound: allSmells.length, smells: allSmells.slice(0, limit) }) };
+        }
+        catch {
+            return { success: true, output: JSON.stringify({ filesScanned: scanFiles.length, smellsFound: staticSmells.length, smells: staticSmells }) };
+        }
+    }
+}
+exports.NeuralSmellsTool = NeuralSmellsTool;
+//# sourceMappingURL=neural-smells.tool.js.map

package/dist/tools/neural/neural-smells.tool.js.map

@@ -0,0 +1 @@
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package/dist/tools/neural/neural-suggest.tool.d.ts

@@ -0,0 +1,10 @@
+import { ToolBase } from "../base/tool-base.class";
+import { ToolContext, ToolExecutionResult } from "../../contracts";
+export declare class NeuralSuggestTool extends ToolBase {
+    readonly name = "neuralSuggest";
+    readonly description = "Suggest the best files/modules to implement a given feature. Uses dependency graph, codebase structure, and LLM reasoning to rank candidates.";
+    readonly readonly = true;
+    constructor();
+    run(input: Record<string, unknown>, ctx: ToolContext): Promise<ToolExecutionResult>;
+}
+//# sourceMappingURL=neural-suggest.tool.d.ts.map

package/dist/tools/neural/neural-suggest.tool.d.ts.map

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