@thoughtflow/codebase 0.2.0 → 0.3.1

package/package.json

@@ -1,15 +1,16 @@
 {
   "name": "@thoughtflow/codebase",
-  "version": "0.2.0",
+  "version": "0.3.1",
   "main": "dist/index.js",
   "types": "dist/index.d.ts",
   "scripts": {
     "build": "tsc -p tsconfig.build.json"
   },
   "dependencies": {
-    "@thoughtflow/core": "0.2.0",
+    "@thoughtflow/core": "*",
     "@ast-grep/napi": "^0.42.1",
-    "better-sqlite3": "^11.10.0"
+    "better-sqlite3": "^11.10.0",
+    "zod": "^3.24.3"
   },
   "devDependencies": {
     "@types/better-sqlite3": "^7.6.13"

package/tsconfig.json

@@ -1,8 +1,19 @@
 {
-  "extends": "../core/tsconfig.json",
   "compilerOptions": {
+    "target": "ES2022",
+    "module": "commonjs",
+    "declaration": true,
+    "strict": true,
+    "esModuleInterop": true,
+    "moduleResolution": "node",
+    "skipLibCheck": true,
+    "forceConsistentCasingInFileNames": true,
     "outDir": "dist",
-    "rootDir": "src"
+    "baseUrl": ".",
+    "paths": {
+      "@thoughtflow/core": ["../core/src"]
+    },
+    "types": ["node"]
   },
   "include": ["src/**/*.ts"],
   "exclude": ["dist", "node_modules"]

package/dist/contexts/context-decomposer.d.ts

@@ -1,13 +0,0 @@
-import type { LlmAdapter, ContextDocument, DecompositionResult, ConversationTool } from "@thoughtflow/core";
-export declare class ContextDecomposer {
-    private readonly adapter;
-    private readonly model;
-    constructor(adapter: LlmAdapter, model: string);
-    /**
-     * Decompose documents and tools using an LLM.
-     * Only decomposes the given docs (typically only changed ones).
-     * Tool analysis happens on every call for freshness.
-     */
-    decompose(docs: ContextDocument[], tools: ConversationTool[]): Promise<DecompositionResult>;
-}
-//# sourceMappingURL=context-decomposer.d.ts.map

package/dist/contexts/context-decomposer.d.ts.map

@@ -1 +0,0 @@
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package/dist/contexts/context-decomposer.js

@@ -1,97 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.ContextDecomposer = void 0;
-const crypto_1 = require("crypto");
-const zod_1 = require("zod");
-const core_1 = require("@thoughtflow/core");
-const DecompositionSchema = zod_1.z.object({
-    documents: zod_1.z.array(zod_1.z.object({
-        name: zod_1.z.string(),
-        summary: zod_1.z.string(),
-        keywords: zod_1.z.array(zod_1.z.string()),
-        category: zod_1.z.enum(["architecture", "security", "domain", "conventions", "data", "other"])
-    })),
-    tools: zod_1.z.array(zod_1.z.object({
-        name: zod_1.z.string(),
-        description: zod_1.z.string(),
-        category: zod_1.z.string(),
-        keywords: zod_1.z.array(zod_1.z.string())
-    }))
-});
-const SYSTEM_PROMPT = "You are a document and tool analyzer. Your job is to produce concise structured metadata about documents and tools.";
-function buildUserPrompt(docs, tools) {
-    const parts = [];
-    if (docs.length > 0) {
-        parts.push("Documents:");
-        for (const doc of docs) {
-            parts.push(`- Name: ${doc.name}`);
-            parts.push(`  Content: ${doc.content}`);
-            parts.push('');
-        }
-    }
-    else {
-        parts.push("No documents to analyze.");
-        parts.push('');
-    }
-    if (tools.length > 0) {
-        parts.push("Tools:");
-        for (const tool of tools) {
-            parts.push(`- Name: ${tool.name}`);
-            parts.push(`  Description: ${tool.description}`);
-            parts.push('');
-        }
-    }
-    else {
-        parts.push("No tools to analyze.");
-        parts.push('');
-    }
-    return parts.join('\n');
-}
-class ContextDecomposer {
-    adapter;
-    model;
-    constructor(adapter, model) {
-        this.adapter = adapter;
-        this.model = model;
-    }
-    /**
-     * Decompose documents and tools using an LLM.
-     * Only decomposes the given docs (typically only changed ones).
-     * Tool analysis happens on every call for freshness.
-     */
-    async decompose(docs, tools) {
-        try {
-            const userPrompt = buildUserPrompt(docs, tools);
-            const { result } = await (0, core_1.callStructured)(this.adapter, this.model, SYSTEM_PROMPT, userPrompt, DecompositionSchema);
-            const documents = result.documents.map(d => ({
-                name: d.name,
-                checksum: (0, crypto_1.createHash)('md5').update(docs.find(doc => doc.name === d.name)?.content ?? '').digest('hex'),
-                summary: d.summary,
-                keywords: d.keywords,
-                category: d.category,
-                decomposedAt: Date.now()
-            }));
-            const toolCapabilities = result.tools.map(t => ({
-                name: t.name,
-                description: t.description,
-                category: t.category,
-                keywords: t.keywords
-            }));
-            return {
-                documents,
-                tools: toolCapabilities,
-                generatedAt: Date.now()
-            };
-        }
-        catch (err) {
-            console.warn('ContextDecomposer.decompose failed:', err);
-            return {
-                documents: [],
-                tools: [],
-                generatedAt: Date.now()
-            };
-        }
-    }
-}
-exports.ContextDecomposer = ContextDecomposer;
-//# sourceMappingURL=context-decomposer.js.map

package/dist/contexts/context-decomposer.js.map

@@ -1 +0,0 @@
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package/dist/contexts/context-document-manager.d.ts

@@ -1,21 +0,0 @@
-import type { ContextDocument, ContextDocumentCache } from "@thoughtflow/core";
-export declare class ContextDocumentManager {
-    private readonly docs;
-    private readonly cacheDir;
-    /**
-     * @param docs     Map of document name → content (user-provided)
-     * @param cacheDir Path to cache file (e.g. ".thoughtflow/context-cache.json")
-     */
-    constructor(docs: Record<string, string>, cacheDir: string);
-    /** Load cached decomposition results from disk. Returns empty array if no cache exists. */
-    loadCache(): ContextDocumentCache[];
-    /** Compute MD5 checksum for each document. Returns Map<docName, checksumHex>. */
-    computeChecksums(): Map<string, string>;
-    /** Return documents whose checksum differs from the cache (or are new). */
-    getChangedDocs(): ContextDocument[];
-    /** Persist the given cache entries to disk as JSON. */
-    saveCache(caches: ContextDocumentCache[]): void;
-    /** Return all documents as ContextDocument[] (the raw input map). */
-    getAllDocs(): ContextDocument[];
-}
-//# sourceMappingURL=context-document-manager.d.ts.map

package/dist/contexts/context-document-manager.d.ts.map

@@ -1 +0,0 @@
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package/dist/contexts/context-document-manager.js

@@ -1,69 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.ContextDocumentManager = void 0;
-const crypto_1 = require("crypto");
-const fs_1 = require("fs");
-const path_1 = require("path");
-class ContextDocumentManager {
-    docs;
-    cacheDir;
-    /**
-     * @param docs     Map of document name → content (user-provided)
-     * @param cacheDir Path to cache file (e.g. ".thoughtflow/context-cache.json")
-     */
-    constructor(docs, cacheDir) {
-        this.docs = docs;
-        this.cacheDir = cacheDir;
-    }
-    /** Load cached decomposition results from disk. Returns empty array if no cache exists. */
-    loadCache() {
-        try {
-            if (!(0, fs_1.existsSync)(this.cacheDir))
-                return [];
-            const raw = (0, fs_1.readFileSync)(this.cacheDir, 'utf-8');
-            const parsed = JSON.parse(raw);
-            if (!Array.isArray(parsed))
-                return [];
-            return parsed;
-        }
-        catch {
-            return [];
-        }
-    }
-    /** Compute MD5 checksum for each document. Returns Map<docName, checksumHex>. */
-    computeChecksums() {
-        const checksums = new Map();
-        for (const [name, content] of Object.entries(this.docs)) {
-            const hash = (0, crypto_1.createHash)('md5').update(content).digest('hex');
-            checksums.set(name, hash);
-        }
-        return checksums;
-    }
-    /** Return documents whose checksum differs from the cache (or are new). */
-    getChangedDocs() {
-        const caches = this.loadCache();
-        const checksums = this.computeChecksums();
-        const cacheByDoc = new Map(caches.map(c => [c.name, c]));
-        const changed = [];
-        for (const [name, content] of Object.entries(this.docs)) {
-            const checksum = checksums.get(name);
-            const cached = cacheByDoc.get(name);
-            if (!cached || cached.checksum !== checksum) {
-                changed.push({ name, content });
-            }
-        }
-        return changed;
-    }
-    /** Persist the given cache entries to disk as JSON. */
-    saveCache(caches) {
-        const dir = (0, path_1.dirname)(this.cacheDir);
-        (0, fs_1.mkdirSync)(dir, { recursive: true });
-        (0, fs_1.writeFileSync)(this.cacheDir, JSON.stringify(caches, null, 2), 'utf-8');
-    }
-    /** Return all documents as ContextDocument[] (the raw input map). */
-    getAllDocs() {
-        return Object.entries(this.docs).map(([name, content]) => ({ name, content }));
-    }
-}
-exports.ContextDocumentManager = ContextDocumentManager;
-//# sourceMappingURL=context-document-manager.js.map

package/dist/contexts/context-document-manager.js.map

@@ -1 +0,0 @@
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package/dist/contexts/context-router.d.ts

@@ -1,13 +0,0 @@
-import type { ContextRoutingConfig, ContextDocumentCache, LlmAdapter } from "@thoughtflow/core";
-export declare class ContextRouter {
-    private readonly config;
-    private readonly adapter;
-    private readonly model;
-    constructor(config: ContextRoutingConfig, adapter: LlmAdapter, model: string);
-    /**
-     * Route the given prompt against cached document metadata.
-     * Returns the list of document names that are relevant.
-     */
-    route(prompt: string, documents: ContextDocumentCache[]): Promise<string[]>;
-}
-//# sourceMappingURL=context-router.d.ts.map

package/dist/contexts/context-router.d.ts.map

@@ -1 +0,0 @@
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package/dist/contexts/context-router.js

@@ -1,94 +0,0 @@
-"use strict";
-Object.defineProperty(exports, "__esModule", { value: true });
-exports.ContextRouter = void 0;
-const core_1 = require("@thoughtflow/core");
-const zod_1 = require("zod");
-const STOP_WORDS = new Set([
-    'a', 'an', 'the', 'is', 'are', 'was', 'were', 'be', 'been', 'being',
-    'have', 'has', 'had', 'do', 'does', 'did', 'will', 'would', 'shall',
-    'should', 'may', 'might', 'must', 'can', 'could', 'i', 'me', 'my',
-    'we', 'our', 'you', 'your', 'he', 'she', 'it', 'they', 'them', 'this',
-    'that', 'these', 'those', 'in', 'on', 'at', 'to', 'for', 'of', 'with',
-    'by', 'from', 'and', 'or', 'not', 'but', 'if', 'so', 'no', 'yes',
-    'what', 'which', 'who', 'whom', 'when', 'where', 'why', 'how'
-]);
-function tokenize(text) {
-    return new Set(text.toLowerCase()
-        .split(/[^a-zA-Z0-9]+/)
-        .filter(w => w.length > 0 && !STOP_WORDS.has(w)));
-}
-function computeScore(promptTokens, doc) {
-    if (doc.keywords.length === 0)
-        return 0;
-    let matches = 0;
-    for (const kw of doc.keywords) {
-        let hasMatch = false;
-        for (const t of tokenize(kw)) {
-            if (promptTokens.has(t)) {
-                hasMatch = true;
-                break;
-            }
-        }
-        if (hasMatch)
-            matches++;
-    }
-    let categoryBonus = 0;
-    if (doc.category && promptTokens.has(doc.category)) {
-        categoryBonus = 0.3;
-    }
-    return (matches / doc.keywords.length) + categoryBonus;
-}
-const routingSchema = zod_1.z.object({
-    relevant: zod_1.z.array(zod_1.z.string())
-});
-class ContextRouter {
-    config;
-    adapter;
-    model;
-    constructor(config, adapter, model) {
-        this.config = config;
-        this.adapter = adapter;
-        this.model = model;
-    }
-    /**
-     * Route the given prompt against cached document metadata.
-     * Returns the list of document names that are relevant.
-     */
-    async route(prompt, documents) {
-        const promptTokens = tokenize(prompt);
-        const strategy = this.config.strategy ?? 'hybrid';
-        const threshold = this.config.relevanceThreshold ?? 0.5;
-        // ── Step 1: keyword matching ────────────────────────────────────
-        const scored = documents.map(doc => ({
-            name: doc.name,
-            score: computeScore(promptTokens, doc)
-        }));
-        const maxScore = Math.max(...scored.map(s => s.score), 0);
-        const normalized = scored.map(s => ({
-            ...s,
-            score: maxScore > 0 ? s.score / maxScore : 0
-        }));
-        const keywordHits = normalized
-            .filter(s => s.score >= threshold)
-            .map(s => s.name);
-        if (strategy === 'keyword') {
-            return keywordHits;
-        }
-        if (strategy === 'hybrid' && keywordHits.length > 0) {
-            return keywordHits;
-        }
-        // ── Step 2: LLM routing ────────────────────────────────────────
-        if (documents.length === 0) {
-            return [];
-        }
-        const routingModel = this.config.model?.model ?? this.model;
-        const docLines = documents
-            .map(d => `- ${d.name}: ${d.summary}`)
-            .join('\n');
-        const userPrompt = `Given the user query: "${prompt}"\n\nSelect which of the following documents are relevant:\n${docLines}`;
-        const result = await (0, core_1.callStructured)(this.adapter, routingModel, 'You are a document routing assistant. Select relevant documents based on the user query.', userPrompt, routingSchema);
-        return result.result.relevant;
-    }
-}
-exports.ContextRouter = ContextRouter;
-//# sourceMappingURL=context-router.js.map

package/dist/contexts/context-router.js.map

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package/dist/index.d.ts

@@ -1,53 +0,0 @@
-export * from "./libs/codebase-index.class";
-export * from "./libs/codebase/deep-analyzer";
-export * from "./libs/codebase/graph/dependency-extractor";
-export * from "./libs/codebase/graph/graph-analysis";
-export * from "./libs/codebase/graph/graph-visualizer";
-export * from "./libs/codebase/indexer/batch-processor";
-export * from "./libs/codebase/indexer/chunker-markdown";
-export * from "./libs/codebase/indexer/chunker";
-export * from "./libs/codebase/indexer/explorer";
-export * from "./libs/codebase/indexer/indexer";
-export * from "./libs/codebase/knowledge/cross-referencer";
-export * from "./libs/codebase/knowledge/markdown-extractor";
-export * from "./libs/codebase/knowledge/summarizer";
-export * from "./libs/codebase/search/bm25";
-export * from "./libs/codebase/search/hybrid-search";
-export * from "./tools/codebase/codebase-analyze.tool";
-export * from "./tools/codebase/codebase-crossref.tool";
-export * from "./tools/codebase/codebase-flow.tool";
-export * from "./tools/codebase/codebase-graph-circular.tool";
-export * from "./tools/codebase/codebase-graph-query.tool";
-export * from "./tools/codebase/codebase-graph-stats.tool";
-export * from "./tools/codebase/codebase-graph-visualize.tool";
-export * from "./tools/codebase/codebase-impact.tool";
-export * from "./tools/codebase/codebase-index.tool";
-export * from "./tools/codebase/codebase-knowledge.tool";
-export * from "./tools/codebase/codebase-search.tool";
-export * from "./tools/codebase/codebase-status.tool";
-export * from "./tools/quality/quality-complexity.tool";
-export * from "./tools/quality/quality-coupling.tool";
-export * from "./tools/quality/quality-coverage.tool";
-export * from "./tools/quality/quality-deps.tool";
-export * from "./tools/quality/quality-duplication.tool";
-export * from "./tools/quality/quality-size.tool";
-export * from "./tools/quality/quality-types.tool";
-export * from "./tools/neural/comparative-analysis.tool";
-export * from "./tools/neural/neural-deadcode.tool";
-export * from "./tools/neural/neural-debug.tool";
-export * from "./tools/neural/neural-explain.tool";
-export * from "./tools/neural/neural-optimize.tool";
-export * from "./tools/neural/neural-pattern.tool";
-export * from "./tools/neural/neural-review.tool";
-export * from "./tools/neural/neural-security.tool";
-export * from "./tools/neural/neural-similar.tool";
-export * from "./tools/neural/neural-smells.tool";
-export * from "./tools/neural/neural-suggest.tool";
-export * from "./tools/workspace/search-code.tool";
-export * from "./tools/workspace/codebase-research.tool";
-export * from "./tools/workspace/project-scanner.tool";
-export * from "./tools/workspace/analyze-project.tool";
-export * from "./contexts/context-decomposer";
-export * from "./contexts/context-document-manager";
-export * from "./contexts/context-router";
-//# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

@@ -1 +0,0 @@
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package/dist/index.js

@@ -1,76 +0,0 @@
-"use strict";
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __exportStar = (this && this.__exportStar) || function(m, exports) {
-    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-// Codebase index
-__exportStar(require("./libs/codebase-index.class"), exports);
-// Codebase libs — deep analyzer, graph, indexer, knowledge, search
-__exportStar(require("./libs/codebase/deep-analyzer"), exports);
-__exportStar(require("./libs/codebase/graph/dependency-extractor"), exports);
-__exportStar(require("./libs/codebase/graph/graph-analysis"), exports);
-__exportStar(require("./libs/codebase/graph/graph-visualizer"), exports);
-__exportStar(require("./libs/codebase/indexer/batch-processor"), exports);
-__exportStar(require("./libs/codebase/indexer/chunker-markdown"), exports);
-__exportStar(require("./libs/codebase/indexer/chunker"), exports);
-__exportStar(require("./libs/codebase/indexer/explorer"), exports);
-__exportStar(require("./libs/codebase/indexer/indexer"), exports);
-__exportStar(require("./libs/codebase/knowledge/cross-referencer"), exports);
-__exportStar(require("./libs/codebase/knowledge/markdown-extractor"), exports);
-__exportStar(require("./libs/codebase/knowledge/summarizer"), exports);
-__exportStar(require("./libs/codebase/search/bm25"), exports);
-__exportStar(require("./libs/codebase/search/hybrid-search"), exports);
-// Tools — codebase
-__exportStar(require("./tools/codebase/codebase-analyze.tool"), exports);
-__exportStar(require("./tools/codebase/codebase-crossref.tool"), exports);
-__exportStar(require("./tools/codebase/codebase-flow.tool"), exports);
-__exportStar(require("./tools/codebase/codebase-graph-circular.tool"), exports);
-__exportStar(require("./tools/codebase/codebase-graph-query.tool"), exports);
-__exportStar(require("./tools/codebase/codebase-graph-stats.tool"), exports);
-__exportStar(require("./tools/codebase/codebase-graph-visualize.tool"), exports);
-__exportStar(require("./tools/codebase/codebase-impact.tool"), exports);
-__exportStar(require("./tools/codebase/codebase-index.tool"), exports);
-__exportStar(require("./tools/codebase/codebase-knowledge.tool"), exports);
-__exportStar(require("./tools/codebase/codebase-search.tool"), exports);
-__exportStar(require("./tools/codebase/codebase-status.tool"), exports);
-// Tools — quality
-__exportStar(require("./tools/quality/quality-complexity.tool"), exports);
-__exportStar(require("./tools/quality/quality-coupling.tool"), exports);
-__exportStar(require("./tools/quality/quality-coverage.tool"), exports);
-__exportStar(require("./tools/quality/quality-deps.tool"), exports);
-__exportStar(require("./tools/quality/quality-duplication.tool"), exports);
-__exportStar(require("./tools/quality/quality-size.tool"), exports);
-__exportStar(require("./tools/quality/quality-types.tool"), exports);
-// Tools — neural
-__exportStar(require("./tools/neural/comparative-analysis.tool"), exports);
-__exportStar(require("./tools/neural/neural-deadcode.tool"), exports);
-__exportStar(require("./tools/neural/neural-debug.tool"), exports);
-__exportStar(require("./tools/neural/neural-explain.tool"), exports);
-__exportStar(require("./tools/neural/neural-optimize.tool"), exports);
-__exportStar(require("./tools/neural/neural-pattern.tool"), exports);
-__exportStar(require("./tools/neural/neural-review.tool"), exports);
-__exportStar(require("./tools/neural/neural-security.tool"), exports);
-__exportStar(require("./tools/neural/neural-similar.tool"), exports);
-__exportStar(require("./tools/neural/neural-smells.tool"), exports);
-__exportStar(require("./tools/neural/neural-suggest.tool"), exports);
-// Tools — workspace (codebase-related)
-__exportStar(require("./tools/workspace/search-code.tool"), exports);
-__exportStar(require("./tools/workspace/codebase-research.tool"), exports);
-__exportStar(require("./tools/workspace/project-scanner.tool"), exports);
-__exportStar(require("./tools/workspace/analyze-project.tool"), exports);
-// Contexts
-__exportStar(require("./contexts/context-decomposer"), exports);
-__exportStar(require("./contexts/context-document-manager"), exports);
-__exportStar(require("./contexts/context-router"), exports);
-//# sourceMappingURL=index.js.map

package/dist/index.js.map

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package/dist/libs/codebase/deep-analyzer.d.ts

@@ -1,58 +0,0 @@
-import type { IVectorStore, IEmbeddingProvider } from "@thoughtflow/core";
-export type AnalysisPhase = 'discover' | 'index' | 'graph' | 'extract-knowledge' | 'summarize' | 'cross-reference' | 'complete';
-export interface DeepAnalysisConfig {
-    repoPath: string;
-    vectorStore: IVectorStore;
-    embeddingProvider: IEmbeddingProvider;
-    phases?: AnalysisPhase[];
-    onProgress?: (phase: AnalysisPhase, message: string, percent: number) => void;
-}
-export interface DeepAnalysisReport {
-    repoName: string;
-    repoPath: string;
-    analyzedAt: string;
-    durationMs: number;
-    stats: {
-        totalFiles: number;
-        codeFiles: number;
-        docFiles: number;
-        configFiles: number;
-        testFiles: number;
-        totalChunks: number;
-    };
-    architecture: {
-        techStack: string[];
-        topModules: string[];
-        entryPoints: string[];
-        circularDependencies: string[][];
-    };
-    knowledge: {
-        documentsExtracted: number;
-        usefulDocuments: number;
-        noiseDocuments: number;
-        decisions: number;
-        qualityScore: number;
-    };
-    traceability: {
-        totalReferences: number;
-        featuresWithCode: number;
-        featuresWithoutCode: number;
-        orphanDocuments: string[];
-        undocumentedModules: string[];
-    };
-    summary: string;
-    recommendations: string[];
-    mermaidDiagram: string;
-}
-export declare class DeepAnalyzer {
-    private config;
-    private startTime;
-    constructor(config: DeepAnalysisConfig);
-    analyze(): Promise<DeepAnalysisReport>;
-    private emit;
-    private detectTechStack;
-    private findTopModules;
-    private findEntryPoints;
-    private generateRecommendations;
-}
-//# sourceMappingURL=deep-analyzer.d.ts.map

package/dist/libs/codebase/deep-analyzer.d.ts.map

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