@thinkingpatterns/cli 0.1.0 → 0.2.0

package/dist/index.js

@@ -216,13 +216,13 @@ function resolveProjectId(explicit) {
 // src/commands/findings.ts
 function registerFindingCommands(program2) {
   const findings = program2.command("findings").description("Manage security findings");
-  findings.command("list").description("List findings for a project").option("-p, --project <id>", "Project ID").option("--severity <severity>", "Filter by severity (critical|high|medium|low|info)").option("--status <status>", "Filter by status (open|triaged|completed|dismissed)").option("--category <category>", "Filter by category").option("--source-tool <tool>", "Filter by source tool").option("--module-path <path>", "Filter by module path prefix").option("--branch <branch>", "Filter by branch").option("--limit <n>", "Max results", parseInt).option("--offset <n>", "Result offset", parseInt).action(async (opts) => {
+  findings.command("list").description("List findings for a project").option("-p, --project <id>", "Project ID").option("--severity <severity>", "Filter by severity, comma-separated (critical,high,medium,low,info)").option("--status <status>", "Filter by status, comma-separated (open,triaged,completed,dismissed)").option("--category <category>", "Filter by category").option("--source-tool <tool>", "Filter by source tool").option("--module-path <path>", "Filter by module path prefix").option("--branch <branch>", "Filter by branch").option("--limit <n>", "Max results", parseInt).option("--offset <n>", "Result offset", parseInt).action(async (opts) => {
     try {
       const projectId = resolveProjectId(opts.project);
       const result = await getClient().listFindings({
         project_id: projectId,
-        severity: opts.severity,
-        status: opts.status,
+        severity: opts.severity?.includes(",") ? opts.severity.split(",").map((s) => s.trim()) : opts.severity,
+        status: opts.status?.includes(",") ? opts.status.split(",").map((s) => s.trim()) : opts.status,
         category: opts.category,
         source_tool: opts.sourceTool,
         module_path: opts.modulePath,
@@ -326,11 +326,15 @@ function registerRunCommands(program2) {
 import { readFileSync as readFileSync3 } from "fs";
 function registerIngestCommands(program2) {
   const ingest = program2.command("ingest").description("Ingest scan results");
-  ingest.command("sarif").description("Ingest a SARIF file").option("-p, --project <id>", "Project ID").requiredOption("--file <path>", "Path to SARIF file").action(async (opts) => {
+  ingest.command("sarif").description("Ingest a SARIF file").option("-p, --project <id>", "Project ID").option("-b, --branch <name>", "Branch name for scoping findings").requiredOption("--file <path>", "Path to SARIF file").action(async (opts) => {
     try {
       const projectId = resolveProjectId(opts.project);
       const content = readFileSync3(opts.file, "utf-8");
-      const result = await getClient().ingestSarif(projectId, content);
+      const result = await getClient().ingestSarifChunked(
+        projectId,
+        content,
+        opts.branch
+      );
       printJson(result);
     } catch (err) {
       printError(err);

package/dist/index.js.map

@@ -1 +1 @@
-{"version":3,"sources":["../src/index.ts","../src/lib/client.ts","../src/lib/credentials.ts","../src/commands/login.ts","../src/lib/output.ts","../src/commands/auth.ts","../src/commands/projects.ts","../src/lib/config.ts","../src/commands/findings.ts","../src/commands/metrics.ts","../src/commands/risk-modules.ts","../src/commands/runs.ts","../src/commands/ingest.ts","../src/commands/agents.ts"],"sourcesContent":["import { Command } from \"commander\";\nimport { setGlobalOpts, resolveApiKey } from \"./lib/client.js\";\nimport { registerLoginCommands } from \"./commands/login.js\";\nimport { registerAuthCommands } from \"./commands/auth.js\";\nimport { registerProjectCommands } from \"./commands/projects.js\";\nimport { registerFindingCommands } from \"./commands/findings.js\";\nimport { registerMetricsCommands } from \"./commands/metrics.js\";\nimport { registerRiskModulesCommands } from \"./commands/risk-modules.js\";\nimport { registerRunCommands } from \"./commands/runs.js\";\nimport { registerIngestCommands } from \"./commands/ingest.js\";\nimport { registerAgentCommands } from \"./commands/agents.js\";\n\n/** Commands that work without authentication. */\nconst NO_AUTH_COMMANDS = new Set([\"login\", \"logout\", \"help\"]);\n\nconst program = new Command();\n\nprogram\n  .name(\"tp\")\n  .description(\"ThinkingPatterns CLI — security findings management\")\n  .version(\"0.1.0\")\n  .option(\"--api-key <key>\", \"API key (overrides TP_API_KEY env)\")\n  .option(\"--api-url <url>\", \"API URL (overrides TP_API_URL env)\")\n  .option(\"--quiet\", \"Suppress non-data output\")\n  .hook(\"preAction\", (thisCommand) => {\n    const commandName = thisCommand.args?.[0] ?? thisCommand.name();\n    if (NO_AUTH_COMMANDS.has(commandName)) return;\n\n    const opts = program.opts();\n    setGlobalOpts({ apiKey: opts.apiKey, apiUrl: opts.apiUrl });\n\n    if (!resolveApiKey()) {\n      process.stderr.write(\n        \"Error: Not authenticated. Run `tp login` or set TP_API_KEY.\\n\"\n      );\n      process.exit(2);\n    }\n  });\n\nregisterLoginCommands(program);\nregisterAuthCommands(program);\nregisterProjectCommands(program);\nregisterFindingCommands(program);\nregisterMetricsCommands(program);\nregisterRiskModulesCommands(program);\nregisterRunCommands(program);\nregisterIngestCommands(program);\nregisterAgentCommands(program);\n\nprogram.parse();\n","import { ThinkingPatternsClient } from \"@thinkingpatterns/core\";\nimport { loadCredentials } from \"./credentials.js\";\n\nconst DEFAULT_API_URL = \"https://thinkingpatterns.ai\";\n\nlet _client: ThinkingPatternsClient | null = null;\nlet _opts: { apiKey?: string; apiUrl?: string } = {};\n\n/** Call once from index.ts to pass through global CLI options. */\nexport function setGlobalOpts(opts: { apiKey?: string; apiUrl?: string }): void {\n  _opts = opts;\n  _client = null; // reset if options change\n}\n\n/**\n * Resolve the API key from (in priority order):\n * 1. --api-key flag\n * 2. TP_API_KEY env var\n * 3. ~/.thinkingpatterns/credentials.json (saved by `tp login`)\n */\nexport function resolveApiKey(): string | undefined {\n  if (_opts.apiKey) return _opts.apiKey;\n  if (process.env.TP_API_KEY) return process.env.TP_API_KEY;\n  return loadCredentials()?.api_key;\n}\n\n/** Resolve the API URL from flag, env, saved credentials, or default. */\nfunction resolveApiUrl(): string {\n  return _opts.apiUrl || process.env.TP_API_URL || loadCredentials()?.api_url || DEFAULT_API_URL;\n}\n\n/** Get the shared client instance (created lazily). */\nexport function getClient(): ThinkingPatternsClient {\n  if (!_client) {\n    const apiKey = resolveApiKey() || \"\";\n    const apiUrl = resolveApiUrl();\n    _client = new ThinkingPatternsClient({ apiKey, apiUrl });\n  }\n  return _client;\n}\n","import { readFileSync, writeFileSync, mkdirSync, rmSync, existsSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport { homedir } from \"node:os\";\n\nconst CONFIG_DIR = join(homedir(), \".thinkingpatterns\");\nconst CREDENTIALS_FILE = join(CONFIG_DIR, \"credentials.json\");\n\ninterface StoredCredentials {\n  api_key: string;\n  api_url?: string;\n}\n\n/** Read persisted credentials, or null if none saved. */\nexport function loadCredentials(): StoredCredentials | null {\n  if (!existsSync(CREDENTIALS_FILE)) return null;\n  try {\n    const content = readFileSync(CREDENTIALS_FILE, \"utf-8\");\n    return JSON.parse(content) as StoredCredentials;\n  } catch {\n    return null;\n  }\n}\n\n/** Persist credentials to ~/.thinkingpatterns/credentials.json. */\nexport function saveCredentials(apiKey: string, apiUrl?: string): void {\n  mkdirSync(CONFIG_DIR, { recursive: true, mode: 0o700 });\n  const data: StoredCredentials = { api_key: apiKey };\n  if (apiUrl) data.api_url = apiUrl;\n  writeFileSync(CREDENTIALS_FILE, JSON.stringify(data, null, 2) + \"\\n\", {\n    mode: 0o600,\n  });\n}\n\n/** Remove persisted credentials. Returns true if a file was deleted. */\nexport function clearCredentials(): boolean {\n  if (!existsSync(CREDENTIALS_FILE)) return false;\n  rmSync(CREDENTIALS_FILE);\n  return true;\n}\n","import type { Command } from \"commander\";\nimport { createInterface } from \"node:readline\";\nimport { ThinkingPatternsClient } from \"@thinkingpatterns/core\";\nimport { saveCredentials, clearCredentials, loadCredentials } from \"../lib/credentials.js\";\n\nconst DEFAULT_API_URL = \"https://thinkingpatterns.ai\";\n\nfunction prompt(question: string): Promise<string> {\n  const rl = createInterface({ input: process.stdin, output: process.stderr });\n  return new Promise((resolve) => {\n    rl.question(question, (answer) => {\n      rl.close();\n      resolve(answer.trim());\n    });\n  });\n}\n\nexport function registerLoginCommands(program: Command): void {\n  program\n    .command(\"login\")\n    .description(\"Authenticate and save credentials\")\n    .option(\"--api-url <url>\", \"API URL (default: https://thinkingpatterns.ai)\")\n    .action(async (opts) => {\n      const apiUrl = opts.apiUrl || DEFAULT_API_URL;\n\n      process.stderr.write(\n        `\\nPaste your API key from ${apiUrl}/settings/api-keys\\n\\n`\n      );\n\n      const apiKey = await prompt(\"API key: \");\n      if (!apiKey) {\n        process.stderr.write(\"Aborted — no key provided.\\n\");\n        process.exit(1);\n      }\n\n      // Validate the key\n      process.stderr.write(\"Verifying...\");\n      try {\n        const client = new ThinkingPatternsClient({ apiKey, apiUrl });\n        const me = await client.whoami();\n        saveCredentials(apiKey, apiUrl !== DEFAULT_API_URL ? apiUrl : undefined);\n        const identity = me.profile?.email ?? me.profile?.display_name ?? me.org?.name ?? \"authenticated user\";\n        process.stderr.write(\n          ` logged in as ${identity}.\\n\\n` +\n          `Credentials saved to ~/.thinkingpatterns/credentials.json\\n`\n        );\n      } catch {\n        process.stderr.write(\" failed.\\n\\nError: Invalid API key.\\n\");\n        process.exit(2);\n      }\n    });\n\n  program\n    .command(\"logout\")\n    .description(\"Remove saved credentials\")\n    .action(() => {\n      const had = loadCredentials();\n      clearCredentials();\n      if (had) {\n        process.stderr.write(\"Credentials removed.\\n\");\n      } else {\n        process.stderr.write(\"No saved credentials found.\\n\");\n      }\n    });\n}\n","import { TPError, TPAuthError, TPNotFoundError } from \"@thinkingpatterns/core\";\n\n/* ─── Exit codes ─── */\n\nexport const EXIT_OK = 0;\nexport const EXIT_CLIENT_ERROR = 1;\nexport const EXIT_AUTH_ERROR = 2;\nexport const EXIT_NOT_FOUND = 3;\nexport const EXIT_UNEXPECTED = 10;\n\n/* ─── Output helpers ─── */\n\nexport function printJson(data: unknown): void {\n  process.stdout.write(JSON.stringify(data, null, 2) + \"\\n\");\n}\n\nexport function printError(err: unknown): never {\n  if (err instanceof TPAuthError) {\n    process.stderr.write(`Error: ${err.message}\\nHint: Run \\`tp login\\` or check your --api-key value.\\n`);\n    process.exit(EXIT_AUTH_ERROR);\n  }\n  if (err instanceof TPNotFoundError) {\n    process.stderr.write(`Error: ${err.message}\\n`);\n    process.exit(EXIT_NOT_FOUND);\n  }\n  if (err instanceof TPError) {\n    process.stderr.write(`Error: ${err.message}\\n`);\n    if (err.details) {\n      process.stderr.write(`Details: ${JSON.stringify(err.details, null, 2)}\\n`);\n    }\n    process.exit(EXIT_CLIENT_ERROR);\n  }\n  if (err instanceof Error) {\n    process.stderr.write(`Error: ${err.message}\\n`);\n  } else {\n    process.stderr.write(`Error: ${String(err)}\\n`);\n  }\n  process.exit(EXIT_UNEXPECTED);\n}\n","import type { Command } from \"commander\";\nimport { getClient } from \"../lib/client.js\";\nimport { printJson, printError } from \"../lib/output.js\";\n\nexport function registerAuthCommands(program: Command): void {\n  program\n    .command(\"whoami\")\n    .description(\"Show current authentication context\")\n    .action(async () => {\n      try {\n        const result = await getClient().whoami();\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n}\n","import type { Command } from \"commander\";\nimport { getClient } from \"../lib/client.js\";\nimport { printJson, printError } from \"../lib/output.js\";\n\nexport function registerProjectCommands(program: Command): void {\n  const projects = program\n    .command(\"projects\")\n    .description(\"Manage projects\");\n\n  projects\n    .command(\"list\")\n    .description(\"List all projects\")\n    .action(async () => {\n      try {\n        const result = await getClient().listProjects();\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n}\n","import { readFileSync, existsSync } from \"node:fs\";\nimport { join, dirname } from \"node:path\";\n\nconst CONFIG_FILE = \".thinkingpatterns.json\";\n\ninterface ProjectConfig {\n  project_id?: string;\n}\n\n/**\n * Walk up from cwd looking for .thinkingpatterns.json.\n * Returns the parsed config or null if not found.\n */\nexport function loadProjectConfig(): ProjectConfig | null {\n  let dir = process.cwd();\n  const root = dirname(dir) === dir ? dir : \"/\";\n\n  while (true) {\n    const filePath = join(dir, CONFIG_FILE);\n    if (existsSync(filePath)) {\n      try {\n        const content = readFileSync(filePath, \"utf-8\");\n        return JSON.parse(content) as ProjectConfig;\n      } catch {\n        return null;\n      }\n    }\n    const parent = dirname(dir);\n    if (parent === dir || dir === root) break;\n    dir = parent;\n  }\n  return null;\n}\n\n/**\n * Resolve project ID from explicit option, falling back to config file.\n * Exits with error if neither is available.\n */\nexport function resolveProjectId(explicit?: string): string {\n  if (explicit) return explicit;\n  const config = loadProjectConfig();\n  if (config?.project_id) return config.project_id;\n  process.stderr.write(\n    \"Error: --project is required (or set project_id in .thinkingpatterns.json)\\n\"\n  );\n  process.exit(1);\n}\n","import type { Command } from \"commander\";\nimport type { TriageAction } from \"@thinkingpatterns/core\";\nimport { getClient } from \"../lib/client.js\";\nimport { printJson, printError } from \"../lib/output.js\";\nimport { resolveProjectId } from \"../lib/config.js\";\n\nexport function registerFindingCommands(program: Command): void {\n  const findings = program\n    .command(\"findings\")\n    .description(\"Manage security findings\");\n\n  findings\n    .command(\"list\")\n    .description(\"List findings for a project\")\n    .option(\"-p, --project <id>\", \"Project ID\")\n    .option(\"--severity <severity>\", \"Filter by severity (critical|high|medium|low|info)\")\n    .option(\"--status <status>\", \"Filter by status (open|triaged|completed|dismissed)\")\n    .option(\"--category <category>\", \"Filter by category\")\n    .option(\"--source-tool <tool>\", \"Filter by source tool\")\n    .option(\"--module-path <path>\", \"Filter by module path prefix\")\n    .option(\"--branch <branch>\", \"Filter by branch\")\n    .option(\"--limit <n>\", \"Max results\", parseInt)\n    .option(\"--offset <n>\", \"Result offset\", parseInt)\n    .action(async (opts) => {\n      try {\n        const projectId = resolveProjectId(opts.project);\n        const result = await getClient().listFindings({\n          project_id: projectId,\n          severity: opts.severity,\n          status: opts.status,\n          category: opts.category,\n          source_tool: opts.sourceTool,\n          module_path: opts.modulePath,\n          branch: opts.branch,\n          limit: opts.limit,\n          offset: opts.offset,\n        });\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n\n  findings\n    .command(\"get <id>\")\n    .description(\"Get finding details\")\n    .action(async (id: string) => {\n      try {\n        const result = await getClient().getFinding(id);\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n\n  findings\n    .command(\"triage <id>\")\n    .description(\"Triage a finding\")\n    .requiredOption(\"--action <action>\", \"Triage action (accept|dismiss|defer|complete|reopen)\")\n    .option(\"--reason <reason>\", \"Reason for the triage decision\")\n    .action(async (id: string, opts) => {\n      try {\n        const result = await getClient().triageFinding(\n          id,\n          opts.action as TriageAction,\n          opts.reason\n        );\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n\n  findings\n    .command(\"bulk-triage\")\n    .description(\"Triage multiple findings at once\")\n    .requiredOption(\"--ids <ids>\", \"Comma-separated finding IDs\")\n    .requiredOption(\"--action <action>\", \"Triage action (accept|dismiss|defer|complete|reopen)\")\n    .option(\"--reason <reason>\", \"Reason for the triage decision\")\n    .action(async (opts) => {\n      try {\n        const findingIds = opts.ids.split(\",\").map((s: string) => s.trim());\n        const result = await getClient().bulkTriage({\n          finding_ids: findingIds,\n          action: opts.action as TriageAction,\n          reason: opts.reason,\n        });\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n\n  findings\n    .command(\"comment <id>\")\n    .description(\"Add a comment to a finding\")\n    .requiredOption(\"--body <text>\", \"Comment text\")\n    .action(async (id: string, opts) => {\n      try {\n        const result = await getClient().addComment(id, opts.body);\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n}\n","import type { Command } from \"commander\";\nimport { getClient } from \"../lib/client.js\";\nimport { printJson, printError } from \"../lib/output.js\";\nimport { resolveProjectId } from \"../lib/config.js\";\n\nexport function registerMetricsCommands(program: Command): void {\n  program\n    .command(\"metrics\")\n    .description(\"Get project metrics (MTTR, fix rate, open count)\")\n    .option(\"-p, --project <id>\", \"Project ID\")\n    .action(async (opts) => {\n      try {\n        const projectId = resolveProjectId(opts.project);\n        const result = await getClient().getProjectMetrics(projectId);\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n}\n","import type { Command } from \"commander\";\nimport { getClient } from \"../lib/client.js\";\nimport { printJson, printError } from \"../lib/output.js\";\nimport { resolveProjectId } from \"../lib/config.js\";\n\nexport function registerRiskModulesCommands(program: Command): void {\n  program\n    .command(\"risk-modules\")\n    .description(\"Get top risk modules for a project\")\n    .option(\"-p, --project <id>\", \"Project ID\")\n    .option(\"--limit <n>\", \"Max results\", parseInt)\n    .action(async (opts) => {\n      try {\n        const projectId = resolveProjectId(opts.project);\n        const result = await getClient().getTopRiskModules(projectId, opts.limit);\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n}\n","import type { Command } from \"commander\";\nimport { getClient } from \"../lib/client.js\";\nimport { printJson, printError } from \"../lib/output.js\";\nimport { resolveProjectId } from \"../lib/config.js\";\n\nexport function registerRunCommands(program: Command): void {\n  const runs = program\n    .command(\"runs\")\n    .description(\"Manage scan runs\");\n\n  runs\n    .command(\"list\")\n    .description(\"List runs for a project\")\n    .option(\"-p, --project <id>\", \"Project ID\")\n    .option(\"--status <status>\", \"Filter by status\")\n    .option(\"--limit <n>\", \"Max results\", parseInt)\n    .option(\"--offset <n>\", \"Result offset\", parseInt)\n    .action(async (opts) => {\n      try {\n        const projectId = resolveProjectId(opts.project);\n        const result = await getClient().listRuns(projectId, {\n          status: opts.status,\n          limit: opts.limit,\n          offset: opts.offset,\n        });\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n}\n","import { readFileSync } from \"node:fs\";\nimport type { Command } from \"commander\";\nimport { getClient } from \"../lib/client.js\";\nimport { printJson, printError } from \"../lib/output.js\";\nimport { resolveProjectId } from \"../lib/config.js\";\n\nexport function registerIngestCommands(program: Command): void {\n  const ingest = program\n    .command(\"ingest\")\n    .description(\"Ingest scan results\");\n\n  ingest\n    .command(\"sarif\")\n    .description(\"Ingest a SARIF file\")\n    .option(\"-p, --project <id>\", \"Project ID\")\n    .requiredOption(\"--file <path>\", \"Path to SARIF file\")\n    .action(async (opts) => {\n      try {\n        const projectId = resolveProjectId(opts.project);\n        const content = readFileSync(opts.file, \"utf-8\");\n        const result = await getClient().ingestSarif(projectId, content);\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n}\n","import { readFileSync } from \"node:fs\";\nimport type { Command } from \"commander\";\nimport { getClient } from \"../lib/client.js\";\nimport { printJson, printError } from \"../lib/output.js\";\nimport { resolveProjectId } from \"../lib/config.js\";\n\nexport function registerAgentCommands(program: Command): void {\n  const agents = program\n    .command(\"agents\")\n    .description(\"Manage analysis agents\");\n\n  agents\n    .command(\"list\")\n    .description(\"List available agents\")\n    .option(\"--category <category>\", \"Filter by category\")\n    .option(\"--status <status>\", \"Filter by status (draft|active|archived)\")\n    .option(\"--limit <n>\", \"Max results\", parseInt)\n    .option(\"--offset <n>\", \"Result offset\", parseInt)\n    .action(async (opts) => {\n      try {\n        const result = await getClient().listAgents({\n          category: opts.category,\n          status: opts.status,\n          limit: opts.limit,\n          offset: opts.offset,\n        });\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n\n  agents\n    .command(\"get <id>\")\n    .description(\"Get agent details\")\n    .action(async (id: string) => {\n      try {\n        const result = await getClient().getAgent(id);\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n\n  agents\n    .command(\"create\")\n    .description(\"Create a new agent\")\n    .requiredOption(\"--name <name>\", \"Agent name\")\n    .requiredOption(\"--slug <slug>\", \"Agent slug (URL-safe identifier)\")\n    .requiredOption(\"--skill-md <path>\", \"Path to SKILL.md file\")\n    .option(\"--description <desc>\", \"Agent description\")\n    .option(\"--category <category>\", \"Agent category\")\n    .action(async (opts) => {\n      try {\n        const skillMd = readFileSync(opts.skillMd, \"utf-8\");\n        const result = await getClient().createAgent({\n          name: opts.name,\n          slug: opts.slug,\n          skill_md: skillMd,\n          description: opts.description,\n          category: opts.category,\n        });\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n\n  agents\n    .command(\"run <id>\")\n    .description(\"Run an agent against a project\")\n    .option(\"-p, --project <id>\", \"Project ID\")\n    .action(async (id: string, opts) => {\n      try {\n        const projectId = resolveProjectId(opts.project);\n        const client = getClient();\n        const [agent, projects] = await Promise.all([\n          client.getAgent(id),\n          client.listProjects(),\n        ]);\n        const project = projects.find((p) => p.id === projectId);\n        if (!project) {\n          process.stderr.write(`Error: Project ${projectId} not found\\n`);\n          process.exit(3);\n        }\n        printJson({\n          agent: { id: agent.id, name: agent.name, slug: agent.slug },\n          project: { id: project.id, name: project.name },\n          skill_md: agent.skill_md,\n          instruction:\n            \"Follow the SKILL.md workflow above. When done, ingest results with: tp ingest sarif --project \" +\n            projectId +\n            \" --file results.sarif\",\n        });\n      } catch (err) {\n        printError(err);\n      }\n    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names":["ThinkingPatternsClient","DEFAULT_API_URL","program","ThinkingPatternsClient","program","program","readFileSync","existsSync","join","program","program","program","program","readFileSync","program","readFileSync","readFileSync","program","readFileSync"]}
+{"version":3,"sources":["../src/index.ts","../src/lib/client.ts","../src/lib/credentials.ts","../src/commands/login.ts","../src/lib/output.ts","../src/commands/auth.ts","../src/commands/projects.ts","../src/lib/config.ts","../src/commands/findings.ts","../src/commands/metrics.ts","../src/commands/risk-modules.ts","../src/commands/runs.ts","../src/commands/ingest.ts","../src/commands/agents.ts"],"sourcesContent":["import { Command } from \"commander\";\nimport { setGlobalOpts, resolveApiKey } from \"./lib/client.js\";\nimport { registerLoginCommands } from \"./commands/login.js\";\nimport { registerAuthCommands } from \"./commands/auth.js\";\nimport { registerProjectCommands } from \"./commands/projects.js\";\nimport { registerFindingCommands } from \"./commands/findings.js\";\nimport { registerMetricsCommands } from \"./commands/metrics.js\";\nimport { registerRiskModulesCommands } from \"./commands/risk-modules.js\";\nimport { registerRunCommands } from \"./commands/runs.js\";\nimport { registerIngestCommands } from \"./commands/ingest.js\";\nimport { registerAgentCommands } from \"./commands/agents.js\";\n\n/** Commands that work without authentication. */\nconst NO_AUTH_COMMANDS = new Set([\"login\", \"logout\", \"help\"]);\n\nconst program = new Command();\n\nprogram\n  .name(\"tp\")\n  .description(\"ThinkingPatterns CLI — security findings management\")\n  .version(\"0.1.0\")\n  .option(\"--api-key <key>\", \"API key (overrides TP_API_KEY env)\")\n  .option(\"--api-url <url>\", \"API URL (overrides TP_API_URL env)\")\n  .option(\"--quiet\", \"Suppress non-data output\")\n  .hook(\"preAction\", (thisCommand) => {\n    const commandName = thisCommand.args?.[0] ?? thisCommand.name();\n    if (NO_AUTH_COMMANDS.has(commandName)) return;\n\n    const opts = program.opts();\n    setGlobalOpts({ apiKey: opts.apiKey, apiUrl: opts.apiUrl });\n\n    if (!resolveApiKey()) {\n      process.stderr.write(\n        \"Error: Not authenticated. Run `tp login` or set TP_API_KEY.\\n\"\n      );\n      process.exit(2);\n    }\n  });\n\nregisterLoginCommands(program);\nregisterAuthCommands(program);\nregisterProjectCommands(program);\nregisterFindingCommands(program);\nregisterMetricsCommands(program);\nregisterRiskModulesCommands(program);\nregisterRunCommands(program);\nregisterIngestCommands(program);\nregisterAgentCommands(program);\n\nprogram.parse();\n","import { ThinkingPatternsClient } from \"@thinkingpatterns/core\";\nimport { loadCredentials } from \"./credentials.js\";\n\nconst DEFAULT_API_URL = \"https://thinkingpatterns.ai\";\n\nlet _client: ThinkingPatternsClient | null = null;\nlet _opts: { apiKey?: string; apiUrl?: string } = {};\n\n/** Call once from index.ts to pass through global CLI options. */\nexport function setGlobalOpts(opts: { apiKey?: string; apiUrl?: string }): void {\n  _opts = opts;\n  _client = null; // reset if options change\n}\n\n/**\n * Resolve the API key from (in priority order):\n * 1. --api-key flag\n * 2. TP_API_KEY env var\n * 3. ~/.thinkingpatterns/credentials.json (saved by `tp login`)\n */\nexport function resolveApiKey(): string | undefined {\n  if (_opts.apiKey) return _opts.apiKey;\n  if (process.env.TP_API_KEY) return process.env.TP_API_KEY;\n  return loadCredentials()?.api_key;\n}\n\n/** Resolve the API URL from flag, env, saved credentials, or default. */\nfunction resolveApiUrl(): string {\n  return _opts.apiUrl || process.env.TP_API_URL || loadCredentials()?.api_url || DEFAULT_API_URL;\n}\n\n/** Get the shared client instance (created lazily). */\nexport function getClient(): ThinkingPatternsClient {\n  if (!_client) {\n    const apiKey = resolveApiKey() || \"\";\n    const apiUrl = resolveApiUrl();\n    _client = new ThinkingPatternsClient({ apiKey, apiUrl });\n  }\n  return _client;\n}\n","import { readFileSync, writeFileSync, mkdirSync, rmSync, existsSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport { homedir } from \"node:os\";\n\nconst CONFIG_DIR = join(homedir(), \".thinkingpatterns\");\nconst CREDENTIALS_FILE = join(CONFIG_DIR, \"credentials.json\");\n\ninterface StoredCredentials {\n  api_key: string;\n  api_url?: string;\n}\n\n/** Read persisted credentials, or null if none saved. */\nexport function loadCredentials(): StoredCredentials | null {\n  if (!existsSync(CREDENTIALS_FILE)) return null;\n  try {\n    const content = readFileSync(CREDENTIALS_FILE, \"utf-8\");\n    return JSON.parse(content) as StoredCredentials;\n  } catch {\n    return null;\n  }\n}\n\n/** Persist credentials to ~/.thinkingpatterns/credentials.json. */\nexport function saveCredentials(apiKey: string, apiUrl?: string): void {\n  mkdirSync(CONFIG_DIR, { recursive: true, mode: 0o700 });\n  const data: StoredCredentials = { api_key: apiKey };\n  if (apiUrl) data.api_url = apiUrl;\n  writeFileSync(CREDENTIALS_FILE, JSON.stringify(data, null, 2) + \"\\n\", {\n    mode: 0o600,\n  });\n}\n\n/** Remove persisted credentials. Returns true if a file was deleted. */\nexport function clearCredentials(): boolean {\n  if (!existsSync(CREDENTIALS_FILE)) return false;\n  rmSync(CREDENTIALS_FILE);\n  return true;\n}\n","import type { Command } from \"commander\";\nimport { createInterface } from \"node:readline\";\nimport { ThinkingPatternsClient } from \"@thinkingpatterns/core\";\nimport { saveCredentials, clearCredentials, loadCredentials } from \"../lib/credentials.js\";\n\nconst DEFAULT_API_URL = \"https://thinkingpatterns.ai\";\n\nfunction prompt(question: string): Promise<string> {\n  const rl = createInterface({ input: process.stdin, output: process.stderr });\n  return new Promise((resolve) => {\n    rl.question(question, (answer) => {\n      rl.close();\n      resolve(answer.trim());\n    });\n  });\n}\n\nexport function registerLoginCommands(program: Command): void {\n  program\n    .command(\"login\")\n    .description(\"Authenticate and save credentials\")\n    .option(\"--api-url <url>\", \"API URL (default: https://thinkingpatterns.ai)\")\n    .action(async (opts) => {\n      const apiUrl = opts.apiUrl || DEFAULT_API_URL;\n\n      process.stderr.write(\n        `\\nPaste your API key from ${apiUrl}/settings/api-keys\\n\\n`\n      );\n\n      const apiKey = await prompt(\"API key: \");\n      if (!apiKey) {\n        process.stderr.write(\"Aborted — no key provided.\\n\");\n        process.exit(1);\n      }\n\n      // Validate the key\n      process.stderr.write(\"Verifying...\");\n      try {\n        const client = new ThinkingPatternsClient({ apiKey, apiUrl });\n        const me = await client.whoami();\n        saveCredentials(apiKey, apiUrl !== DEFAULT_API_URL ? apiUrl : undefined);\n        const identity = me.profile?.email ?? me.profile?.display_name ?? me.org?.name ?? \"authenticated user\";\n        process.stderr.write(\n          ` logged in as ${identity}.\\n\\n` +\n          `Credentials saved to ~/.thinkingpatterns/credentials.json\\n`\n        );\n      } catch {\n        process.stderr.write(\" failed.\\n\\nError: Invalid API key.\\n\");\n        process.exit(2);\n      }\n    });\n\n  program\n    .command(\"logout\")\n    .description(\"Remove saved credentials\")\n    .action(() => {\n      const had = loadCredentials();\n      clearCredentials();\n      if (had) {\n        process.stderr.write(\"Credentials removed.\\n\");\n      } else {\n        process.stderr.write(\"No saved credentials found.\\n\");\n      }\n    });\n}\n","import { TPError, TPAuthError, TPNotFoundError } from \"@thinkingpatterns/core\";\n\n/* ─── Exit codes ─── */\n\nexport const EXIT_OK = 0;\nexport const EXIT_CLIENT_ERROR = 1;\nexport const EXIT_AUTH_ERROR = 2;\nexport const EXIT_NOT_FOUND = 3;\nexport const EXIT_UNEXPECTED = 10;\n\n/* ─── Output helpers ─── */\n\nexport function printJson(data: unknown): void {\n  process.stdout.write(JSON.stringify(data, null, 2) + \"\\n\");\n}\n\nexport function printError(err: unknown): never {\n  if (err instanceof TPAuthError) {\n    process.stderr.write(`Error: ${err.message}\\nHint: Run \\`tp login\\` or check your --api-key value.\\n`);\n    process.exit(EXIT_AUTH_ERROR);\n  }\n  if (err instanceof TPNotFoundError) {\n    process.stderr.write(`Error: ${err.message}\\n`);\n    process.exit(EXIT_NOT_FOUND);\n  }\n  if (err instanceof TPError) {\n    process.stderr.write(`Error: ${err.message}\\n`);\n    if (err.details) {\n      process.stderr.write(`Details: ${JSON.stringify(err.details, null, 2)}\\n`);\n    }\n    process.exit(EXIT_CLIENT_ERROR);\n  }\n  if (err instanceof Error) {\n    process.stderr.write(`Error: ${err.message}\\n`);\n  } else {\n    process.stderr.write(`Error: ${String(err)}\\n`);\n  }\n  process.exit(EXIT_UNEXPECTED);\n}\n","import type { Command } from \"commander\";\nimport { getClient } from \"../lib/client.js\";\nimport { printJson, printError } from \"../lib/output.js\";\n\nexport function registerAuthCommands(program: Command): void {\n  program\n    .command(\"whoami\")\n    .description(\"Show current authentication context\")\n    .action(async () => {\n      try {\n        const result = await getClient().whoami();\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n}\n","import type { Command } from \"commander\";\nimport { getClient } from \"../lib/client.js\";\nimport { printJson, printError } from \"../lib/output.js\";\n\nexport function registerProjectCommands(program: Command): void {\n  const projects = program\n    .command(\"projects\")\n    .description(\"Manage projects\");\n\n  projects\n    .command(\"list\")\n    .description(\"List all projects\")\n    .action(async () => {\n      try {\n        const result = await getClient().listProjects();\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n}\n","import { readFileSync, existsSync } from \"node:fs\";\nimport { join, dirname } from \"node:path\";\n\nconst CONFIG_FILE = \".thinkingpatterns.json\";\n\ninterface ProjectConfig {\n  project_id?: string;\n}\n\n/**\n * Walk up from cwd looking for .thinkingpatterns.json.\n * Returns the parsed config or null if not found.\n */\nexport function loadProjectConfig(): ProjectConfig | null {\n  let dir = process.cwd();\n  const root = dirname(dir) === dir ? dir : \"/\";\n\n  while (true) {\n    const filePath = join(dir, CONFIG_FILE);\n    if (existsSync(filePath)) {\n      try {\n        const content = readFileSync(filePath, \"utf-8\");\n        return JSON.parse(content) as ProjectConfig;\n      } catch {\n        return null;\n      }\n    }\n    const parent = dirname(dir);\n    if (parent === dir || dir === root) break;\n    dir = parent;\n  }\n  return null;\n}\n\n/**\n * Resolve project ID from explicit option, falling back to config file.\n * Exits with error if neither is available.\n */\nexport function resolveProjectId(explicit?: string): string {\n  if (explicit) return explicit;\n  const config = loadProjectConfig();\n  if (config?.project_id) return config.project_id;\n  process.stderr.write(\n    \"Error: --project is required (or set project_id in .thinkingpatterns.json)\\n\"\n  );\n  process.exit(1);\n}\n","import type { Command } from \"commander\";\nimport type { TriageAction } from \"@thinkingpatterns/core\";\nimport { getClient } from \"../lib/client.js\";\nimport { printJson, printError } from \"../lib/output.js\";\nimport { resolveProjectId } from \"../lib/config.js\";\n\nexport function registerFindingCommands(program: Command): void {\n  const findings = program\n    .command(\"findings\")\n    .description(\"Manage security findings\");\n\n  findings\n    .command(\"list\")\n    .description(\"List findings for a project\")\n    .option(\"-p, --project <id>\", \"Project ID\")\n    .option(\"--severity <severity>\", \"Filter by severity, comma-separated (critical,high,medium,low,info)\")\n    .option(\"--status <status>\", \"Filter by status, comma-separated (open,triaged,completed,dismissed)\")\n    .option(\"--category <category>\", \"Filter by category\")\n    .option(\"--source-tool <tool>\", \"Filter by source tool\")\n    .option(\"--module-path <path>\", \"Filter by module path prefix\")\n    .option(\"--branch <branch>\", \"Filter by branch\")\n    .option(\"--limit <n>\", \"Max results\", parseInt)\n    .option(\"--offset <n>\", \"Result offset\", parseInt)\n    .action(async (opts) => {\n      try {\n        const projectId = resolveProjectId(opts.project);\n        const result = await getClient().listFindings({\n          project_id: projectId,\n          severity: opts.severity?.includes(\",\") ? opts.severity.split(\",\").map((s: string) => s.trim()) : opts.severity,\n          status: opts.status?.includes(\",\") ? opts.status.split(\",\").map((s: string) => s.trim()) : opts.status,\n          category: opts.category,\n          source_tool: opts.sourceTool,\n          module_path: opts.modulePath,\n          branch: opts.branch,\n          limit: opts.limit,\n          offset: opts.offset,\n        });\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n\n  findings\n    .command(\"get <id>\")\n    .description(\"Get finding details\")\n    .action(async (id: string) => {\n      try {\n        const result = await getClient().getFinding(id);\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n\n  findings\n    .command(\"triage <id>\")\n    .description(\"Triage a finding\")\n    .requiredOption(\"--action <action>\", \"Triage action (accept|dismiss|defer|complete|reopen)\")\n    .option(\"--reason <reason>\", \"Reason for the triage decision\")\n    .action(async (id: string, opts) => {\n      try {\n        const result = await getClient().triageFinding(\n          id,\n          opts.action as TriageAction,\n          opts.reason\n        );\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n\n  findings\n    .command(\"bulk-triage\")\n    .description(\"Triage multiple findings at once\")\n    .requiredOption(\"--ids <ids>\", \"Comma-separated finding IDs\")\n    .requiredOption(\"--action <action>\", \"Triage action (accept|dismiss|defer|complete|reopen)\")\n    .option(\"--reason <reason>\", \"Reason for the triage decision\")\n    .action(async (opts) => {\n      try {\n        const findingIds = opts.ids.split(\",\").map((s: string) => s.trim());\n        const result = await getClient().bulkTriage({\n          finding_ids: findingIds,\n          action: opts.action as TriageAction,\n          reason: opts.reason,\n        });\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n\n  findings\n    .command(\"comment <id>\")\n    .description(\"Add a comment to a finding\")\n    .requiredOption(\"--body <text>\", \"Comment text\")\n    .action(async (id: string, opts) => {\n      try {\n        const result = await getClient().addComment(id, opts.body);\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n}\n","import type { Command } from \"commander\";\nimport { getClient } from \"../lib/client.js\";\nimport { printJson, printError } from \"../lib/output.js\";\nimport { resolveProjectId } from \"../lib/config.js\";\n\nexport function registerMetricsCommands(program: Command): void {\n  program\n    .command(\"metrics\")\n    .description(\"Get project metrics (MTTR, fix rate, open count)\")\n    .option(\"-p, --project <id>\", \"Project ID\")\n    .action(async (opts) => {\n      try {\n        const projectId = resolveProjectId(opts.project);\n        const result = await getClient().getProjectMetrics(projectId);\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n}\n","import type { Command } from \"commander\";\nimport { getClient } from \"../lib/client.js\";\nimport { printJson, printError } from \"../lib/output.js\";\nimport { resolveProjectId } from \"../lib/config.js\";\n\nexport function registerRiskModulesCommands(program: Command): void {\n  program\n    .command(\"risk-modules\")\n    .description(\"Get top risk modules for a project\")\n    .option(\"-p, --project <id>\", \"Project ID\")\n    .option(\"--limit <n>\", \"Max results\", parseInt)\n    .action(async (opts) => {\n      try {\n        const projectId = resolveProjectId(opts.project);\n        const result = await getClient().getTopRiskModules(projectId, opts.limit);\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n}\n","import type { Command } from \"commander\";\nimport { getClient } from \"../lib/client.js\";\nimport { printJson, printError } from \"../lib/output.js\";\nimport { resolveProjectId } from \"../lib/config.js\";\n\nexport function registerRunCommands(program: Command): void {\n  const runs = program\n    .command(\"runs\")\n    .description(\"Manage scan runs\");\n\n  runs\n    .command(\"list\")\n    .description(\"List runs for a project\")\n    .option(\"-p, --project <id>\", \"Project ID\")\n    .option(\"--status <status>\", \"Filter by status\")\n    .option(\"--limit <n>\", \"Max results\", parseInt)\n    .option(\"--offset <n>\", \"Result offset\", parseInt)\n    .action(async (opts) => {\n      try {\n        const projectId = resolveProjectId(opts.project);\n        const result = await getClient().listRuns(projectId, {\n          status: opts.status,\n          limit: opts.limit,\n          offset: opts.offset,\n        });\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n}\n","import { readFileSync } from \"node:fs\";\nimport type { Command } from \"commander\";\nimport { getClient } from \"../lib/client.js\";\nimport { printJson, printError } from \"../lib/output.js\";\nimport { resolveProjectId } from \"../lib/config.js\";\n\nexport function registerIngestCommands(program: Command): void {\n  const ingest = program\n    .command(\"ingest\")\n    .description(\"Ingest scan results\");\n\n  ingest\n    .command(\"sarif\")\n    .description(\"Ingest a SARIF file\")\n    .option(\"-p, --project <id>\", \"Project ID\")\n    .option(\"-b, --branch <name>\", \"Branch name for scoping findings\")\n    .requiredOption(\"--file <path>\", \"Path to SARIF file\")\n    .action(async (opts) => {\n      try {\n        const projectId = resolveProjectId(opts.project);\n        const content = readFileSync(opts.file, \"utf-8\");\n        const result = await getClient().ingestSarifChunked(\n          projectId,\n          content,\n          opts.branch\n        );\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n}\n","import { readFileSync } from \"node:fs\";\nimport type { Command } from \"commander\";\nimport { getClient } from \"../lib/client.js\";\nimport { printJson, printError } from \"../lib/output.js\";\nimport { resolveProjectId } from \"../lib/config.js\";\n\nexport function registerAgentCommands(program: Command): void {\n  const agents = program\n    .command(\"agents\")\n    .description(\"Manage analysis agents\");\n\n  agents\n    .command(\"list\")\n    .description(\"List available agents\")\n    .option(\"--category <category>\", \"Filter by category\")\n    .option(\"--status <status>\", \"Filter by status (draft|active|archived)\")\n    .option(\"--limit <n>\", \"Max results\", parseInt)\n    .option(\"--offset <n>\", \"Result offset\", parseInt)\n    .action(async (opts) => {\n      try {\n        const result = await getClient().listAgents({\n          category: opts.category,\n          status: opts.status,\n          limit: opts.limit,\n          offset: opts.offset,\n        });\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n\n  agents\n    .command(\"get <id>\")\n    .description(\"Get agent details\")\n    .action(async (id: string) => {\n      try {\n        const result = await getClient().getAgent(id);\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n\n  agents\n    .command(\"create\")\n    .description(\"Create a new agent\")\n    .requiredOption(\"--name <name>\", \"Agent name\")\n    .requiredOption(\"--slug <slug>\", \"Agent slug (URL-safe identifier)\")\n    .requiredOption(\"--skill-md <path>\", \"Path to SKILL.md file\")\n    .option(\"--description <desc>\", \"Agent description\")\n    .option(\"--category <category>\", \"Agent category\")\n    .action(async (opts) => {\n      try {\n        const skillMd = readFileSync(opts.skillMd, \"utf-8\");\n        const result = await getClient().createAgent({\n          name: opts.name,\n          slug: opts.slug,\n          skill_md: skillMd,\n          description: opts.description,\n          category: opts.category,\n        });\n        printJson(result);\n      } catch (err) {\n        printError(err);\n      }\n    });\n\n  agents\n    .command(\"run <id>\")\n    .description(\"Run an agent against a project\")\n    .option(\"-p, --project <id>\", \"Project ID\")\n    .action(async (id: string, opts) => {\n      try {\n        const projectId = resolveProjectId(opts.project);\n        const client = getClient();\n        const [agent, projects] = await Promise.all([\n          client.getAgent(id),\n          client.listProjects(),\n        ]);\n        const project = projects.find((p) => p.id === projectId);\n        if (!project) {\n          process.stderr.write(`Error: Project ${projectId} not found\\n`);\n          process.exit(3);\n        }\n        printJson({\n          agent: { id: agent.id, name: agent.name, slug: agent.slug },\n          project: { id: project.id, name: project.name },\n          skill_md: agent.skill_md,\n          instruction:\n            \"Follow the SKILL.md workflow above. When done, ingest results with: tp ingest sarif --project \" +\n            projectId +\n            \" --file results.sarif\",\n        });\n      } catch (err) {\n        printError(err);\n      }\n    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package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@thinkingpatterns/cli",
-  "version": "0.1.0",
+  "version": "0.2.0",
   "description": "ThinkingPatterns CLI for security findings management",
   "type": "module",
   "main": "dist/index.js",
@@ -16,7 +16,7 @@
     "start": "node dist/index.js"
   },
   "dependencies": {
-    "@thinkingpatterns/core": "^0.1.0",
+    "@thinkingpatterns/core": "^0.2.0",
     "commander": "^13.0.0"
   },
   "devDependencies": {