@theokit/sdk 5.15.1 → 5.15.2

package/dist/{chunk-NEH3BPFD.cjs.map → chunk-HI5TJWQE.cjs.map}

@@ -1 +1 @@
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{ createHash } from \"node:crypto\";\n\nimport type { MemoryChunk } from \"../types.js\";\n\n/**\n * Split a markdown document into semantically meaningful chunks (ADR D1 of\n * memory-system-peer-project-parity).\n *\n * Algorithm:\n *   1. Walk lines tracking the current heading (latest `^#+ ` line).\n *   2. Split chunks at the next heading boundary AND on blank-line paragraph\n *      boundaries.\n *   3. If a single paragraph exceeds `maxChars`, split it at the nearest\n *      whitespace ≤ maxChars (word-aligned per edge-case review EC-6) —\n *      never mid-word.\n *\n * Mirrors peer-project's `chunkMarkdown` from\n * `packages/memory-host-sdk/src/host/chunk-markdown.ts`.\n *\n * @internal\n */\n\nexport interface ChunkMarkdownOptions {\n  /** Maximum chars per chunk. Default 800. */\n  maxChars?: number;\n  /** Minimum chars per chunk (avoids splintering tiny lines). Default 80. */\n  minChars?: number;\n}\n\nconst HEADING_RE = /^(#{1,6})\\s+(.+?)\\s*$/;\n\ninterface ChunkAccumulator {\n  chunks: MemoryChunk[];\n  lines: string[];\n  start: number;\n  heading: string | undefined;\n}\n\nexport function chunkMarkdown(text: string, options: ChunkMarkdownOptions = {}): MemoryChunk[] {\n  const maxChars = options.maxChars ?? 800;\n  if (text.length === 0) return [];\n  const lines = text.split(\"\\n\");\n  const acc: ChunkAccumulator = { chunks: [], lines: [], start: 1, heading: undefined };\n  for (let i = 0; i < lines.length; i++) {\n    const line = lines[i] ?? \"\";\n    const lineNumber = i + 1;\n    processLine(acc, line, lineNumber, maxChars);\n  }\n  flushAccumulator(acc, lines.length, maxChars);\n  return acc.chunks;\n}\n\nfunction processLine(\n  acc: ChunkAccumulator,\n  line: string,\n  lineNumber: number,\n  maxChars: number,\n): void {\n  const headingMatch = HEADING_RE.exec(line);\n  const isBlank = line.trim().length === 0;\n  if (headingMatch !== null && acc.lines.length > 0) {\n    flushAccumulator(acc, lineNumber - 1, maxChars);\n  }\n  if (headingMatch !== null) acc.heading = headingMatch[2];\n  acc.lines.push(line);\n  if (isBlank && acc.lines.length > 1) {\n    const joined = acc.lines.join(\"\\n\");\n    if (joined.trim().length > 0) flushAccumulator(acc, lineNumber, maxChars);\n  }\n}\n\nfunction flushAccumulator(acc: ChunkAccumulator, endLineExclusive: number, maxChars: number): void {\n  if (acc.lines.length === 0) return;\n  const chunkText = acc.lines.join(\"\\n\");\n  if (chunkText.trim().length === 0) {\n    acc.lines = [];\n    acc.start = endLineExclusive + 1;\n    return;\n  }\n  if (chunkText.length > maxChars) {\n    pushOversizedSlices(acc.chunks, chunkText, acc.start, acc.heading, maxChars);\n  } else {\n    acc.chunks.push(buildChunk(chunkText, acc.start, endLineExclusive, acc.heading));\n  }\n  acc.lines = [];\n  acc.start = endLineExclusive + 1;\n}\n\nfunction buildChunk(\n  text: string,\n  startLine: number,\n  endLine: number,\n  heading: string | undefined,\n): MemoryChunk {\n  return {\n    startLine,\n    endLine,\n    text,\n    hash: createHash(\"sha256\").update(text).digest(\"hex\"),\n    ...(heading !== undefined ? { heading } : {}),\n  };\n}\n\nfunction pushOversizedSlices(\n  chunks: MemoryChunk[],\n  text: string,\n  startLine: number,\n  heading: string | undefined,\n  maxChars: number,\n): void {\n  let remaining = text;\n  let lineCursor = startLine;\n  while (remaining.length > maxChars) {\n    const splitAt = findWordBoundarySplit(remaining, maxChars);\n    const slice = remaining.slice(0, splitAt);\n    const sliceLines = slice.split(\"\\n\").length;\n    chunks.push(buildChunk(slice, lineCursor, lineCursor + sliceLines - 1, heading));\n    remaining = remaining.slice(splitAt).replace(/^\\s+/, \"\");\n    lineCursor += sliceLines - 1;\n  }\n  if (remaining.length > 0) {\n    const sliceLines = remaining.split(\"\\n\").length;\n    chunks.push(buildChunk(remaining, lineCursor, lineCursor + sliceLines - 1, heading));\n  }\n}\n\n/**\n * Find a split point ≤ maxChars that lands on a whitespace boundary so we\n * don't slice a word in half. Falls back to maxChars if no whitespace is\n * within range (very rare — a single token > maxChars).\n */\nfunction findWordBoundarySplit(text: string, maxChars: number): number {\n  if (text.length <= maxChars) return text.length;\n  // Walk backward from maxChars looking for whitespace.\n  for (let i = maxChars; i > Math.max(0, maxChars - 200); i--) {\n    if (/\\s/.test(text[i] ?? \"x\")) return i;\n  }\n  // No whitespace within 200 chars of the cap — accept a hard split.\n  return maxChars;\n}\n","/**\n * The corpus walk: read every markdown file under the memory root, and re-chunk the ones that\n * changed.\n *\n * One of the four concerns that shared `IndexManager`, and the one with the most distinct reason to\n * change — \"which files are in the corpus and when is one stale\" is a question about the filesystem,\n * not about search or about the schema. It takes a {@link MemoryIndexRepository} rather than a\n * database, so it cannot reach past it into SQL.\n *\n * The staleness test is the content hash, NOT the mtime. mtime is written into `files` for\n * observability; a file touched without being edited must not cost a re-chunk, and a file restored\n * from a backup with an older mtime must not be skipped.\n *\n * @internal\n */\n\nimport { readFile, stat } from \"node:fs/promises\";\nimport { collectMarkdownFiles, sha256 } from \"./index-manager-helpers.js\";\nimport type { MemoryIndexRepository } from \"./index-repository.js\";\nimport { chunkMarkdown } from \"./storage/chunk-markdown.js\";\nimport type { MemoryRoot } from \"./storage/memory-root.js\";\n\nexport interface CorpusSyncCounts {\n  readonly filesScanned: number;\n  readonly filesUpdated: number;\n  readonly chunksWritten: number;\n}\n\nexport async function syncCorpus(\n  repo: MemoryIndexRepository,\n  memoryRoot: MemoryRoot,\n): Promise<CorpusSyncCounts> {\n  const files = await collectMarkdownFiles(memoryRoot);\n  const existingByPath = repo.filesByPath();\n  let filesUpdated = 0;\n  let chunksWritten = 0;\n\n  for (const entry of files) {\n    const raw = await readFile(entry.absolutePath, \"utf8\");\n    const hash = sha256(raw);\n    if (existingByPath.get(entry.absolutePath)?.hash === hash) continue;\n\n    const stats = await stat(entry.absolutePath);\n    const fileId = repo.upsertFile({\n      absPath: entry.absolutePath,\n      relPath: entry.relPath,\n      hash,\n      mtimeMs: stats.mtimeMs,\n      source: entry.source,\n    });\n    repo.deleteChunksForFile(fileId);\n    const chunks = chunkMarkdown(raw);\n    for (const chunk of chunks) repo.insertChunk({ fileId, ...chunk });\n\n    filesUpdated += 1;\n    chunksWritten += chunks.length;\n  }\n\n  return { filesScanned: files.length, filesUpdated, chunksWritten };\n}\n","/**\n * Escapes a user query for a SQL `LIKE ... ESCAPE '\\'` clause.\n *\n * The order of the three replacements is the whole correctness argument, so it is its own\n * function rather than a chain inline at the call site.\n *\n * The previous version escaped `%` and `_` but not the escape character itself, which is the\n * defect CodeQL reports as `js/incomplete-sanitization` (alerts #14, #15). Two things went wrong,\n * and the second is the one that matters:\n *\n *   \"back\\slash\"  ->  \"%back\\slash%\"    the `\\s` is an escape of `s`, which LIKE does not define\n *   \"x\\%y\"        ->  \"%x\\\\%y%\"         the inserted `\\` is consumed escaping the user's `\\`,\n *                                       leaving `%` UNESCAPED — a wildcard the caller did not\n *                                       write, matching anything between `x\\` and `y`\n *\n * The second is wildcard injection: a search for a literal string silently becomes a scan. In a\n * memory index that is both a wrong answer and a way to pull back rows the query never asked for.\n *\n * Escaping the backslash FIRST is what fixes it — afterwards every `\\` in the string is one this\n * function put there, so the later replacements cannot collide with a user-supplied one.\n */\nexport function escapeLikePattern(query: string): string {\n  return `%${query.replace(/\\\\/g, \"\\\\\\\\\").replace(/%/g, \"\\\\%\").replace(/_/g, \"\\\\_\")}%`;\n}\n","/**\n * Common `MemoryIndex` interface shared between the SQLite-backed\n * `IndexManager` (default) and the Lance-backed adapter (ADR D43, shipped\n * v1.4.0 via lancedb-backend-ship-v1-1 plan).\n *\n * Consumers (`local-agent-memory.ts`, `active-memory.ts`, `tools.ts`,\n * `runActiveMemory`) only ever call `sync()`, `search()`, `status()`,\n * `close()` — the union of those four methods is the portable surface.\n *\n * Why a separate file (vs declaring inline in `index-manager.ts`)? D43\n * promised \"extract an abstract `MemoryIndex` interface in\n * `internal/memory/index-interface.ts`\". Keeping the contract physically\n * separated from one of its implementations preserves OCP — future\n * backends (Qdrant, PGVector) can land without touching IndexManager.\n *\n * @internal\n */\n\nimport type { IndexStatus, MemorySearchHit, SearchOptions } from \"./index-manager-contract.js\";\n\n// Re-export consumer-facing shapes for stable internal import paths.\nexport type { IndexStatus, MemorySearchHit, SearchOptions };\n\nexport interface SyncResult {\n  filesScanned: number;\n  filesUpdated: number;\n  chunksWritten: number;\n  chunksEmbedded: number;\n  /**\n   * Whether this backend actually walked a corpus.\n   *\n   * REQUIRED, not optional, and that is the point. `MemoryIndex` has two implementers and consumers\n   * hold the interface: `IndexManager` walks files, and `LanceMemoryAdapter` has no corpus to walk —\n   * it is a vector store fed by explicit `addFacts`. The adapter used to answer with a frozen\n   * all-zeros result, which a caller cannot tell apart from a real sync that found nothing to do.\n   * The comment above it stated that as the intention (\"so callers' existing logging does not\n   * break\"), which is the substitution defect written down as a feature.\n   *\n   * A required boolean forces every implementer to say which case it is in, and forces the compiler\n   * to notice a new implementer that forgot. An optional flag would have let the next backend\n   * reproduce the silence.\n   */\n  supported: boolean;\n}\n\n/**\n * Common search-options parser used by both `IndexManager.search` and\n * `LanceMemoryAdapter.search`. Returns the normalized cap + minimum-score\n * floor — eliminates jscpd duplication while keeping per-backend search\n * logic distinct.\n */\nexport function parseSearchOptions(options: SearchOptions = {}): {\n  maxResults: number;\n  minScore: number;\n} {\n  return {\n    maxResults: Math.max(1, options.maxResults ?? 10),\n    minScore: options.minScore ?? 0,\n  };\n}\n\nexport interface MemoryIndex {\n  /**\n   * Walk the memory corpus + reindex changed files. Lance backend has no\n   * markdown corpus to walk — its adapter returns zero counts (no-op) and\n   * relies on explicit `addFact` calls instead.\n   */\n  sync(): Promise<SyncResult>;\n\n  /**\n   * Semantic + textual search over the indexed corpus. Both backends\n   * return the same `MemorySearchHit[]` shape; Lance leaves `textScore`\n   * undefined (vector-only — no FTS5 layer).\n   */\n  search(query: string, options?: SearchOptions): Promise<MemorySearchHit[]>;\n\n  /** Snapshot of the index health (backend type + counts). */\n  status(): IndexStatus;\n\n  /** Release native handles. Idempotent. */\n  close(): Promise<void> | void;\n}\n","/**\n * `LanceMemoryAdapter` — wraps `LanceIndex` to expose the common\n * `MemoryIndex` interface (sync/search/status/close) so consumers of\n * `IndexManager.open({ backend: \"lance\" })` get a drop-in replacement\n * for the SQLite-backed `IndexManager`.\n *\n * Semantic deltas vs SQLite (documented so callers know what to expect):\n *\n *  - `sync()` is a NO-OP. Lance is a pure vector store — there is no\n *    markdown corpus to crawl. It returns zero counts with `supported: false`\n *    so the result is not mistaken for a sync that found nothing. Consumers\n *    writing facts hold a `LanceIndex` and call `addFacts` on it; the adapter\n *    does not hand its adaptee out.\n *  - `search()` is HYBRID, not vector-only. Lance supplies the vector distance\n *    and `translateLanceHit` adds a client-side term-overlap ratio (T4.5), so\n *    `textScore` is a real number in 0..1 and `score` is `0.7 * vectorScore +\n *    0.3 * textScore` — never `=== vectorScore`. This block said the opposite\n *    for as long as T4.5 has been shipped, while the docblock 90 lines below\n *    described the change correctly, so the two halves of one file disagreed\n *    and the header is the half a caller reads.\n *  - `status()` reports `backend: \"hybrid\"` only when an embedding runtime\n *    is wired (always the case for Lance — embedding is required at open).\n *    Both counts are 0 with `countsExact: false`: the port declares `status()`\n *    synchronous and Lance's row count is async, so nothing can be measured\n *    here. The zeros are placeholders and the flag says which.\n *\n * Ships with the lancedb-backend-ship-v1-1 plan (close D12, supersede via\n * D43). v1.4.0 of `@theokit/sdk`.\n *\n * @internal\n */\n\nimport type { IndexStatus, MemorySearchHit, SearchOptions } from \"./index-manager-contract.js\";\nimport { type HybridWeights, resolveWeights } from \"./index-manager-helpers.js\";\nimport type { LanceIndex } from \"./lance-index.js\";\nimport { type MemoryIndex, parseSearchOptions, type SyncResult } from \"./memory-index.js\";\n\n/**\n * Default namespace used when consumers call `search()` without specifying\n * one. The SQLite `IndexManager` does not surface namespace in its public\n * `search()` signature either — both backends therefore behave consistently\n * under the \"single-workspace, single-namespace\" assumption that v1.4 ships.\n *\n * v1.5 candidate: surface `namespace` in `SearchOptions` (additive — no\n * breaking change) so multi-tenant Lance consumers can scope queries.\n */\nconst DEFAULT_NAMESPACE = \"default\";\n\n/**\n * Lance has no corpus to walk, and the result now SAYS so.\n *\n * The counts stay zero — inventing numbers would trade one false claim for another. What changed is\n * `supported: false`: an all-zeros result was previously indistinguishable from a real sync that\n * found nothing to reindex, and the comment above this constant used to present that as the goal\n * (\"so callers' existing logging does not break\"). A caller can now tell \"nothing to do\" from\n * \"this backend does not do this\".\n */\nconst UNSUPPORTED_SYNC_RESULT: SyncResult = Object.freeze({\n  filesScanned: 0,\n  filesUpdated: 0,\n  chunksWritten: 0,\n  chunksEmbedded: 0,\n  supported: false,\n});\n\nexport class LanceMemoryAdapter implements MemoryIndex {\n  constructor(private readonly inner: LanceIndex) {}\n\n  /**\n   * Not applicable to Lance — see file header. Returns zero counts with `supported: false` so a\n   * caller can distinguish this from a real sync that found nothing.\n   */\n  async sync(): Promise<SyncResult> {\n    return UNSUPPORTED_SYNC_RESULT;\n  }\n\n  // jscpd:ignore-start — search signature + early-out is idiomatic\n  // overlap with IndexManager.search; further factoring would hurt\n  // readability (the bodies diverge sharply right after).\n  async search(query: string, options: SearchOptions = {}): Promise<MemorySearchHit[]> {\n    if (query.trim().length === 0) return [];\n    const { maxResults, minScore } = parseSearchOptions(options);\n    // jscpd:ignore-end\n    const lanceHits = await this.inner.search(query, {\n      namespace: DEFAULT_NAMESPACE,\n      limit: maxResults * 2,\n      ...(options.sources !== undefined ? { sources: options.sources } : {}),\n    });\n    return lanceHits\n      .filter((h) => h.score >= minScore)\n      .slice(0, maxResults)\n      .map((h) => translateLanceHit(h, query, resolveWeights(options)));\n  }\n\n  status(): IndexStatus {\n    // The Lance API is async and `status()` is not, so no count can be taken here. The zeros are\n    // placeholders and `countsExact: false` says so — previously they were indistinguishable from a\n    // measured empty index, so a caller testing `chunksIndexed > 0` got a false negative on every\n    // run regardless of how many rows the table held.\n    //\n    // There is deliberately no escape hatch. This class used to carry `unwrap(): LanceIndex`,\n    // documented as being for \"the migration tool, benchmark script\" — measured 2026-09-01, it had\n    // ZERO callers anywhere in the monorepo, including those two, which hold a `LanceIndex`\n    // directly and never open the adapter. What it did have was this comment pointing at it, which\n    // made the leak read as the supported way to work around the limitation. A caller that needs\n    // the real count needs `LanceIndex`, and the honest way to get one is to open one.\n    return {\n      backend: \"hybrid\",\n      filesIndexed: 0,\n      chunksIndexed: 0,\n      countsExact: false,\n    };\n  }\n\n  async close(): Promise<void> {\n    await this.inner.close();\n  }\n}\n\n/**\n * Translate `LanceSearchHit` to `MemorySearchHit`. Field mapping:\n *\n *   - `id` → `path` (Lance has no file-system provenance; use opaque id)\n *   - `text` → `snippet` (truncated to 200 chars matching IndexManager convention)\n *   - `score` → combined (0.7 × vectorScore + 0.3 × textScore)\n *   - `vectorScore` → from Lance's distance metric\n *   - `textScore` → T4.5 client-side term-overlap ratio (removes ADR D43 vector-only caveat)\n *   - `source` → `source`\n *   - synthetic `startLine: 0, endLine: 0` (Lance has no line info)\n *   - synthetic `citation: id` (no path:line citation available)\n */\nfunction translateLanceHit(\n  hit: { id: string; text: string; source: \"memory\" | \"sessions\" | \"wiki\"; score: number },\n  query: string | undefined,\n  weights: HybridWeights,\n): MemorySearchHit {\n  const textScore = query !== undefined ? computeTermOverlapScore(query, hit.text) : 0;\n  const vectorScore = hit.score;\n  // The CALLER's weights, through the same `resolveWeights` the SQLite path uses. These were the\n  // literals 0.7 and 0.3, so a caller that tuned `vectorWeight` / `textWeight` had its tuning applied\n  // on one backend and silently dropped on the other — the shape of failure that makes a swap-in\n  // backend untrustworthy. The defaults differ between the two (0.6/0.4 from resolveWeights, versus\n  // the 0.7/0.3 written here), so unweighted results move slightly; that is the point, since one of\n  // the two numbers was not the contract's.\n  const combined =\n    (vectorScore * weights.vectorWeight + textScore * weights.textWeight) / weights.total;\n  return {\n    path: hit.id,\n    startLine: 0,\n    endLine: 0,\n    score: combined,\n    textScore,\n    vectorScore,\n    snippet: hit.text.slice(0, 200),\n    source: hit.source,\n    citation: hit.id,\n  };\n}\n\n/**\n * T4.5 — Client-side term-overlap score for Lance hybrid search.\n * Counts what fraction of query terms appear in the text (case-insensitive).\n * Simple but effective for re-ranking vector hits by lexical relevance.\n * Returns 0..1 where 1 = all query terms present.\n */\nfunction computeTermOverlapScore(query: string, text: string): number {\n  const queryTerms = query\n    .toLowerCase()\n    .split(/\\s+/)\n    .filter((t) => t.length > 1);\n  if (queryTerms.length === 0) return 0;\n  const textLower = text.toLowerCase();\n  const matched = queryTerms.filter((term) => textLower.includes(term)).length;\n  return matched / queryTerms.length;\n}\n","/**\n * Dispatch helpers for `IndexManager.open`. Extracted to keep\n * `index-manager.ts` under the G8 400-LoC budget (lancedb-backend-ship-v1-1).\n *\n * @internal\n */\n\nimport { ConfigurationError } from \"../../errors.js\";\nimport type { MemoryBackend, OpenIndexOptions } from \"./index-manager-contract.js\";\nimport { LanceIndex } from \"./lance-index.js\";\nimport { LanceMemoryAdapter } from \"./lance-memory-adapter.js\";\nimport type { MemoryIndex } from \"./memory-index.js\";\n\n/** Valid backend identifiers — runtime guard against TS-narrowing escapes (EC-1). */\nexport const VALID_BACKENDS: readonly MemoryBackend[] = [\"sqlite-vec\", \"lance\"];\n\n/**\n * EC-1: runtime guard for `opts.backend`. TS union is compile-time only;\n * consumers passing JS `as any` typos must hit a typed error, not silent\n * SQLite fallback.\n */\nexport function assertValidBackend(backend: string): asserts backend is MemoryBackend {\n  if (!VALID_BACKENDS.includes(backend as MemoryBackend)) {\n    throw new ConfigurationError(\n      `Invalid memory backend \"${backend}\". Valid values: ${VALID_BACKENDS.join(\", \")}.`,\n      { code: \"invalid_memory_backend\" },\n    );\n  }\n}\n\n/**\n * Lance-path open. Throws `lance_requires_embedding` when no embedding\n * runtime is provided (Lance is vector-only — no FTS fallback).\n * Surfaces `lance_backend_unavailable` from LanceIndex.open when peer\n * dep is absent.\n */\nexport async function openLanceIndex(opts: OpenIndexOptions): Promise<MemoryIndex> {\n  if (opts.embedding === undefined) {\n    throw new ConfigurationError(\n      \"Lance backend requires an embedding runtime. Pass `embedding: { provider, model, apiKey }` in Memory.create options (or omit `backend` to use SQLite default).\",\n      { code: \"lance_requires_embedding\" },\n    );\n  }\n  const lance = await LanceIndex.open({\n    cwd: opts.cwd,\n    embedding: opts.embedding,\n    ...(opts.filePath !== undefined ? { storagePath: opts.filePath } : {}),\n  });\n  return new LanceMemoryAdapter(lance);\n}\n","/**\n * Every SQL string the memory index runs, in one place.\n *\n * `IndexManager` answered four questions with four independent reasons to change: the corpus walk,\n * the BM25-to-score normalisation, the vector-cache strategy, and the schema. This is the fourth.\n * Changing a column, an index or a join is now a change to THIS file, and the caller above it reads\n * as search logic rather than as SQL with scoring in between.\n *\n * The row-to-`MemorySearchHit` mapping deliberately stays with the caller: turning a row into a hit\n * involves a score, a snippet and a citation, none of which the schema knows about. Keeping it here\n * would move the normalisation into the repository and re-create the same mixture one layer down.\n *\n * Rows come back as `Record<string, unknown>` for the same reason: the repository knows what it\n * SELECTed, not what the caller will make of it.\n *\n * @internal\n */\n\nimport type { MemoryDb } from \"./index-db.js\";\n\n/** What `files` holds for one path — the pair the corpus walk compares against disk. */\nexport interface FileRow {\n  readonly id: number;\n  readonly hash: string;\n}\n\nexport class MemoryIndexRepository {\n  constructor(private readonly db: MemoryDb) {}\n\n  counts(): { files: number; chunks: number } {\n    const files = this.db.prepare(\"SELECT COUNT(*) as n FROM files\").get() ?? { n: 0 };\n    const chunks = this.db.prepare(\"SELECT COUNT(*) as n FROM chunks\").get() ?? { n: 0 };\n    return { files: Number(files.n ?? 0), chunks: Number(chunks.n ?? 0) };\n  }\n\n  /**\n   * FTS5 match, ordered by bm25. THROWS on an FTS5 error rather than swallowing it — whether that\n   * error means \"CJK input the default tokenizer cannot segment\" or \"the table is missing\" is a\n   * judgement the caller makes, and it makes it differently for each.\n   */\n  ftsRows(sanitizedQuery: string, limit: number): Array<Record<string, unknown>> {\n    return this.db\n      .prepare(\n        `SELECT chunks.id as id, files.rel_path as rel_path, files.source as source,\n                chunks.start_line as start_line, chunks.end_line as end_line,\n                chunks.text as text, bm25(chunks_fts) as bm25_score\n         FROM chunks_fts\n         JOIN chunks ON chunks_fts.rowid = chunks.id\n         JOIN files  ON chunks.file_id = files.id\n         WHERE chunks_fts MATCH ?\n         ORDER BY bm25_score\n         LIMIT ?`,\n      )\n      .all(sanitizedQuery, limit);\n  }\n\n  /** Substring scan — the CJK fallback. No relevance score exists here; the caller supplies one. */\n  likeRows(escapedPattern: string, limit: number): Array<Record<string, unknown>> {\n    return this.db\n      .prepare(\n        `SELECT chunks.id as id, files.rel_path as rel_path, files.source as source,\n                chunks.start_line as start_line, chunks.end_line as end_line,\n                chunks.text as text\n         FROM chunks\n         JOIN files ON chunks.file_id = files.id\n         WHERE chunks.text LIKE ? ESCAPE '\\\\'\n         LIMIT ?`,\n      )\n      .all(escapedPattern, limit) as Array<Record<string, unknown>>;\n  }\n\n  /** Hydrate the chunks a vector search returned by id. Empty in, empty out — no query runs. */\n  chunkRowsByIds(ids: ReadonlyArray<number>): Array<Record<string, unknown>> {\n    if (ids.length === 0) return [];\n    const placeholders = ids.map(() => \"?\").join(\",\");\n    return this.db\n      .prepare(\n        `SELECT chunks.id as id, files.rel_path as rel_path, files.source as source,\n                chunks.start_line as start_line, chunks.end_line as end_line,\n                chunks.text as text\n         FROM chunks JOIN files ON chunks.file_id = files.id\n         WHERE chunks.id IN (${placeholders})`,\n      )\n      .all(...ids);\n  }\n\n  /** Absolute path → its row, for the corpus walk to compare hashes against disk. */\n  filesByPath(): Map<string, FileRow> {\n    const rows = this.db.prepare(\"SELECT id, path, hash FROM files\").all() as Array<{\n      id: number;\n      path: string;\n      hash: string;\n    }>;\n    return new Map(rows.map((row) => [row.path, { id: row.id, hash: row.hash }]));\n  }\n\n  upsertFile(file: {\n    absPath: string;\n    relPath: string;\n    hash: string;\n    mtimeMs: number;\n    source: \"memory\" | \"wiki\" | \"sessions\";\n  }): number {\n    const row = this.db\n      .prepare(\n        `INSERT INTO files (path, rel_path, mtime, hash, source) VALUES (?, ?, ?, ?, ?)\n         ON CONFLICT(path) DO UPDATE SET hash = excluded.hash, mtime = excluded.mtime, source = excluded.source\n         RETURNING id`,\n      )\n      .get(file.absPath, file.relPath, Math.floor(file.mtimeMs), file.hash, file.source) as {\n      id: number;\n    };\n    return row.id;\n  }\n\n  deleteChunksForFile(fileId: number): void {\n    this.db.prepare(\"DELETE FROM chunks WHERE file_id = ?\").run(fileId);\n  }\n\n  insertChunk(chunk: {\n    fileId: number;\n    startLine: number;\n    endLine: number;\n    text: string;\n    hash: string;\n  }): void {\n    this.db\n      .prepare(\n        \"INSERT INTO chunks (file_id, start_line, end_line, text, hash) VALUES (?, ?, ?, ?, ?)\",\n      )\n      .run(chunk.fileId, chunk.startLine, chunk.endLine, chunk.text, chunk.hash);\n  }\n\n  close(): void {\n    this.db.close();\n  }\n}\n","import { ConfigurationError } from \"../../errors.js\";\nimport type { MemoryDb } from \"./index-db.js\";\n\n/**\n * Load the `sqlite-vec` extension into an opened SQLite connection.\n *\n * Wraps the native `load(db)` call from the `sqlite-vec` npm package with a\n * typed error path (EC-8 of the edge-case review) so callers see a\n * `sqlite_vec_unavailable` ConfigurationError instead of a raw native error.\n *\n * @internal\n */\nexport async function loadSqliteVecExtension(db: MemoryDb): Promise<void> {\n  try {\n    const mod = await import(\"sqlite-vec\");\n    const loadFn = (mod as { load?: (db: unknown) => void }).load;\n    if (typeof loadFn !== \"function\") {\n      throw new Error(\"sqlite-vec module exposes no `load` export\");\n    }\n    loadFn(db);\n  } catch (cause) {\n    const message = cause instanceof Error ? cause.message : String(cause);\n    throw new ConfigurationError(\n      `sqlite-vec extension unavailable. Install \\`sqlite-vec\\` and ensure the native binary matches your Node + OS. Cause: ${message}`,\n      { code: \"sqlite_vec_unavailable\", cause },\n    );\n  }\n}\n","import type { EmbeddingRuntime } from \"./embedding-adapter.js\";\nimport type { MemoryDb } from \"./index-db.js\";\n\n/**\n * Vector index helpers (ADR D2 + D4 of memory-system-peer-project-parity).\n *\n * Embeddings live in `embeddings(chunk_id, vec)` — a `vec0` virtual table\n * provided by the sqlite-vec extension. Embedding identity (providerId +\n * model + dimension) lives in the `meta` table; mismatches force a full\n * re-embed sweep (EC-1).\n *\n * @internal\n */\n\nexport const META_KEY_PROVIDER_ID = \"embedding.providerId\";\nexport const META_KEY_MODEL = \"embedding.model\";\nexport const META_KEY_DIMENSION = \"embedding.dimension\";\n\nexport interface EmbeddingIdentity {\n  providerId: string;\n  model: string;\n  dimension: number;\n}\n\nexport function readEmbeddingIdentity(db: MemoryDb): EmbeddingIdentity | undefined {\n  const get = (key: string): string | undefined => {\n    const row = db.prepare(\"SELECT value FROM meta WHERE key = ?\").get(key);\n    return row !== undefined ? String(row.value) : undefined;\n  };\n  const providerId = get(META_KEY_PROVIDER_ID);\n  const model = get(META_KEY_MODEL);\n  const dimRaw = get(META_KEY_DIMENSION);\n  if (providerId === undefined || model === undefined || dimRaw === undefined) return undefined;\n  const dimension = Number(dimRaw);\n  if (!Number.isFinite(dimension) || dimension <= 0) return undefined;\n  return { providerId, model, dimension };\n}\n\nexport function writeEmbeddingIdentity(db: MemoryDb, identity: EmbeddingIdentity): void {\n  const stmt = db.prepare(\n    \"INSERT INTO meta (key, value) VALUES (?, ?) ON CONFLICT(key) DO UPDATE SET value = excluded.value\",\n  );\n  stmt.run(META_KEY_PROVIDER_ID, identity.providerId);\n  stmt.run(META_KEY_MODEL, identity.model);\n  stmt.run(META_KEY_DIMENSION, String(identity.dimension));\n}\n\nexport function identityMatches(a: EmbeddingIdentity, b: EmbeddingIdentity): boolean {\n  return a.providerId === b.providerId && a.model === b.model && a.dimension === b.dimension;\n}\n\nexport function dropVectorIndex(db: MemoryDb): void {\n  db.exec(\"DROP TABLE IF EXISTS embeddings\");\n}\n\nexport function createVectorIndex(db: MemoryDb, dimension: number): void {\n  db.exec(`CREATE VIRTUAL TABLE IF NOT EXISTS embeddings USING vec0(\n    chunk_id INTEGER PRIMARY KEY,\n    vec FLOAT[${dimension}]\n  )`);\n}\n\n/** Pack a Float32Array into a Buffer suitable for sqlite-vec BLOB binding. */\nexport function packVector(vec: ReadonlyArray<number>): Buffer {\n  const f32 = new Float32Array(vec.length);\n  for (let i = 0; i < vec.length; i++) f32[i] = vec[i] ?? 0;\n  return Buffer.from(f32.buffer);\n}\n\nexport function upsertEmbedding(db: MemoryDb, chunkId: number, vec: ReadonlyArray<number>): void {\n  // sqlite-vec vec0 virtual tables don't support UPSERT — emulate via\n  // DELETE-then-INSERT. vec0 REJECTS JS Number for chunk_id columns; it\n  // requires BigInt binding. Verified via repro against vec0 v0.1.9.\n  const id = BigInt(chunkId);\n  db.prepare(\"DELETE FROM embeddings WHERE chunk_id = ?\").run(id);\n  db.prepare(\"INSERT INTO embeddings (chunk_id, vec) VALUES (?, ?)\").run(id, packVector(vec));\n}\n\nexport interface VectorHitRow {\n  chunk_id: number;\n  distance: number;\n}\n\nexport function vectorSearch(\n  db: MemoryDb,\n  query: ReadonlyArray<number>,\n  k: number,\n): VectorHitRow[] {\n  // sqlite-vec returns distance (lower = closer). Use KNN syntax. k needs\n  // a BigInt-typed binding too.\n  const rows = db\n    .prepare(\n      `SELECT chunk_id, distance FROM embeddings\n       WHERE vec MATCH ? AND k = ?\n       ORDER BY distance`,\n    )\n    .all(packVector(query), BigInt(k));\n  return rows.map((row) => ({ chunk_id: Number(row.chunk_id), distance: Number(row.distance) }));\n}\n\nexport interface EmbedAllArgs {\n  db: MemoryDb;\n  runtime: EmbeddingRuntime;\n}\n\n/** Embed every chunk that doesn't yet have a vector. */\nexport async function embedMissingChunks(args: EmbedAllArgs): Promise<number> {\n  const rows = args.db\n    .prepare(\n      `SELECT chunks.id as id, chunks.text as text\n       FROM chunks\n       LEFT JOIN embeddings ON embeddings.chunk_id = chunks.id\n       WHERE embeddings.chunk_id IS NULL`,\n    )\n    .all();\n  if (rows.length === 0) return 0;\n  const normalized = rows.map((row) => ({ id: Number(row.id), text: String(row.text ?? \"\") }));\n  const vectors = await args.runtime.embed(normalized.map((r) => r.text));\n  for (let i = 0; i < normalized.length; i++) {\n    const row = normalized[i];\n    const vector = vectors[i];\n    if (row === undefined || vector === undefined) continue;\n    upsertEmbedding(args.db, row.id, vector);\n  }\n  return normalized.length;\n}\n","import { createHash } from \"node:crypto\";\nimport { diag } from \"../diagnostics.js\";\nimport { containsCjk, sanitizeFts5Query } from \"../persistence/fts5-sanitize.js\";\nimport { syncCorpus } from \"./corpus-sync.js\";\nimport type { EmbeddingRuntime } from \"./embedding-adapter.js\";\nimport { LruEmbeddingCache } from \"./embedding-cache.js\";\nimport { escapeLikePattern } from \"./escape-like-pattern.js\";\nimport { defaultIndexPath, type MemoryDb, openMemoryDb } from \"./index-db.js\";\nimport { assertValidBackend, openLanceIndex } from \"./index-manager-dispatch.js\";\nimport { blendScores, resolveWeights, truncateSnippet } from \"./index-manager-helpers.js\";\nimport { MemoryIndexRepository } from \"./index-repository.js\";\nimport type { SyncResult } from \"./memory-index.js\";\nimport { type MemoryIndex, parseSearchOptions } from \"./memory-index.js\";\nimport { loadSqliteVecExtension } from \"./sqlite-vec-loader.js\";\nimport { type MemoryRoot, memoryIndexRoot, resolveMemoryRoot } from \"./storage/memory-root.js\";\n\n// T4.1 — query-vector LRU cache (DR4 finding #1). Keyed by\n// sha256(query); caches the embedding vector so repeated search\n// queries skip the HTTP round-trip (p99 1.5-3s → ~0ms on hit).\n// Process-wide singleton with bounded capacity (default 2000 queries).\nconst queryVectorCache = new LruEmbeddingCache(2000);\n\nimport {\n  createVectorIndex,\n  dropVectorIndex,\n  embedMissingChunks,\n  identityMatches,\n  readEmbeddingIdentity,\n  vectorSearch,\n  writeEmbeddingIdentity,\n} from \"./vec-index.js\";\n\n/**\n * Memory index manager (ADR D2). FTS5-only at Phase 3; vector index lands in\n * Phase 5.\n *\n * Lifecycle:\n *   const idx = await IndexManager.open({ cwd });\n *   await idx.sync();\n *   const hits = await idx.search(\"query\");\n *   idx.close();\n *\n * @internal\n */\n\n// T2.1 / ADR D433 — these types now live in `index-manager-contract.ts`\n// to break the 3-cycle memory cluster. Re-exported here for back-compat\n// with downstream importers that historically pulled from this file.\nexport type {\n  IndexStatus,\n  MemoryBackend,\n  MemorySearchHit,\n  OpenIndexOptions,\n  SearchOptions,\n} from \"./index-manager-contract.js\";\n\nimport type {\n  IndexStatus,\n  MemorySearchHit,\n  OpenIndexOptions,\n  SearchOptions,\n} from \"./index-manager-contract.js\";\n\nexport class IndexManager implements MemoryIndex {\n  private lastSyncMs: number | undefined;\n  private vectorReady = false;\n\n  /** Every SQL string this class used to hold. See `index-repository.ts` for why it moved. */\n  private readonly repo: MemoryIndexRepository;\n\n  private constructor(\n    private readonly memoryRoot: MemoryRoot,\n    private readonly db: MemoryDb,\n    private readonly embedding: EmbeddingRuntime | undefined,\n  ) {\n    this.repo = new MemoryIndexRepository(db);\n  }\n\n  /**\n   * Open a memory index. Dispatches to SQLite (default) or Lance (opt-in\n   * via `backend: \"lance\"`). See `openLanceInternal` for Lance-specific\n   * preconditions + typed errors.\n   */\n  static async open(opts: OpenIndexOptions & { backend: \"lance\" }): Promise<MemoryIndex>;\n  static async open(\n    opts: Omit<OpenIndexOptions, \"backend\"> | (OpenIndexOptions & { backend?: \"sqlite-vec\" }),\n  ): Promise<IndexManager>;\n  static async open(opts: OpenIndexOptions): Promise<MemoryIndex> {\n    const backend = opts.backend ?? \"sqlite-vec\";\n    assertValidBackend(backend);\n    if (backend === \"lance\") return await openLanceIndex(opts);\n    return await IndexManager.openSqliteInternal(opts);\n  }\n\n  /** Internal SQLite-path open. Renamed from previous public `open`. */\n  private static async openSqliteInternal(opts: OpenIndexOptions): Promise<IndexManager> {\n    const memoryRoot = opts.memoryRoot ?? resolveMemoryRoot(opts.cwd);\n    // What gets INDEXED and where the DATABASE lives are two decisions, and they diverge —\n    // for one directory, not for every directory (theokit-sdk#554).\n    //\n    // The database stays in the project store when `memory.directory` names the directory the\n    // Claude Code CLI manages, because that CLI has no index format and a binary there is an\n    // artefact the partner does not understand inside a directory it owns\n    // (`docs/memory-decisions.md` § 1). That argument covers exactly that directory.\n    //\n    // It does not reach a plain directory, and treating every root as if it did leaked: the index\n    // holds `chunks.text` — the fact TEXT, which FTS5 needs — so leaving it in `<cwd>` while the\n    // facts move writes one operator's personal store into every repository the agent runs in.\n    const filePath = opts.filePath ?? defaultIndexPath(memoryIndexRoot(opts.cwd, memoryRoot));\n    const db = await openMemoryDb({ filePath });\n    const manager = new IndexManager(memoryRoot, db, opts.embedding);\n    if (opts.embedding !== undefined) await manager.initVectorBackend(opts.embedding);\n    return manager;\n  }\n\n  private async initVectorBackend(runtime: EmbeddingRuntime): Promise<void> {\n    await loadSqliteVecExtension(this.db);\n    const currentIdentity = {\n      providerId: runtime.id,\n      model: runtime.model,\n      dimension: runtime.dimension,\n    };\n    const persisted = readEmbeddingIdentity(this.db);\n    if (persisted !== undefined && !identityMatches(persisted, currentIdentity)) {\n      // EC-1: dimension/model/provider changed — drop the vector index and\n      // force a full re-embed on next sync.\n      dropVectorIndex(this.db);\n    }\n    createVectorIndex(this.db, runtime.dimension);\n    writeEmbeddingIdentity(this.db, currentIdentity);\n    this.vectorReady = true;\n  }\n\n  /** Walk the memory corpus + (re)index changed files. */\n  // Declares `Promise<SyncResult>` rather than repeating the shape inline. The inline version was a\n  // structural copy of the interface it implements, so widening `SyncResult` with `supported` left\n  // this method silently no longer assignable to `MemoryIndex` — the compiler caught it, which is\n  // the argument for naming the type instead of restating it.\n  async sync(): Promise<SyncResult> {\n    const counts = await syncCorpus(this.repo, this.memoryRoot);\n    let chunksEmbedded = 0;\n    if (this.vectorReady && this.embedding !== undefined) {\n      chunksEmbedded = await embedMissingChunks({ db: this.db, runtime: this.embedding });\n    }\n    this.lastSyncMs = Date.now();\n    // `supported: true` — this implementer genuinely walks the corpus, so its counts are a\n    // measurement rather than a placeholder. See SyncResult.supported.\n    return { ...counts, chunksEmbedded, supported: true };\n  }\n\n  async search(query: string, options: SearchOptions = {}): Promise<MemorySearchHit[]> {\n    if (query.trim().length === 0) return [];\n    const { maxResults, minScore } = parseSearchOptions(options);\n    const textHits = this.ftsSearch(query, maxResults * 2);\n    const vectorHitsById = await this.vectorSearchById(query, maxResults * 2);\n    const combined = this.combineHybridScores(textHits, vectorHitsById, options);\n    return combined\n      .filter((h) => h.score >= minScore)\n      .filter((h) => options.sources === undefined || options.sources.includes(h.source))\n      .slice(0, maxResults);\n  }\n\n  status(): IndexStatus {\n    const { files, chunks } = this.repo.counts();\n    const status: IndexStatus = {\n      backend: this.vectorReady ? \"hybrid\" : \"fts-only\",\n      filesIndexed: files,\n      chunksIndexed: chunks,\n      // Counted with SELECT COUNT(*) just above — these are measurements, not placeholders.\n      countsExact: true,\n    };\n    if (this.lastSyncMs !== undefined) status.lastSyncMs = this.lastSyncMs;\n    return status;\n  }\n\n  // ───── search internals ──────────────────────────────────────────────\n\n  private ftsSearch(query: string, limit: number): Array<MemorySearchHit & { chunkId: number }> {\n    // EC-3: short-circuit when sanitizer reduces input to empty string.\n    // Calling `MATCH ''` would error inside FTS5 on some SQLite versions.\n    const sanitized = sanitizeFts5Query(query);\n    if (sanitized.length === 0) return [];\n    let rows: Array<Record<string, unknown>> = [];\n    try {\n      rows = this.repo.ftsRows(sanitized, limit);\n    } catch (err) {\n      // T4.8 — CJK fallback: FTS5's default tokenizer chokes on CJK characters (no word boundaries).\n      // Instead of returning empty, fall back to a LIKE search, which handles CJK correctly (slower\n      // but correct). ADR D64 documents the trigram-routing deferral.\n      //\n      // GATED on the condition it was written for, and reported otherwise. The catch used to be\n      // unconditional, so a corrupt database, a missing `chunks_fts` table (which happens when FTS5\n      // is unavailable at open) and a disk error all became a LIKE scan over the whole table\n      // returning plausible hits at a hardcoded 0.5 — degraded relevance with no signal that\n      // anything had failed. The fallback still runs, because returning nothing would be worse; what\n      // changes is that the operator learns the query is not being answered by the index.\n      if (!containsCjk(query)) {\n        diag(\n          `memory FTS query failed for a non-CJK query and fell back to a LIKE scan — relevance is ` +\n            `degraded and the index may be missing or corrupt: ${\n              err instanceof Error ? err.message : String(err)\n            }`,\n        );\n      }\n      return this.likeSearchFallback(query, limit);\n    }\n    return rows.map((row) => {\n      const bm25 = Number(row.bm25_score ?? 0);\n      const textScore = bm25 < 0 ? 1 / (1 + Math.abs(bm25)) : 1 / (1 + bm25);\n      const startLine = Number(row.start_line ?? 0);\n      const endLine = Number(row.end_line ?? 0);\n      const path = String(row.rel_path);\n      return {\n        path,\n        startLine,\n        endLine,\n        score: textScore,\n        textScore,\n        snippet: truncateSnippet(String(row.text ?? \"\")),\n        source: String(row.source) as \"memory\" | \"sessions\" | \"wiki\",\n        citation: `${path}:${startLine}-${endLine}`,\n        // sneak the chunk id through for the hybrid join below\n        // (cast away later)\n        chunkId: Number(row.id),\n      } as MemorySearchHit & { chunkId: number };\n    });\n  }\n\n  /**\n   * T4.8 — LIKE-based fallback for CJK and other scripts that FTS5's\n   * default tokenizer cannot segment. Slower than FTS5 (full table scan)\n   * but correct for any Unicode input. Returns the same shape as\n   * `ftsSearch` so callers are unaware of the fallback.\n   */\n  private likeSearchFallback(\n    query: string,\n    limit: number,\n  ): Array<MemorySearchHit & { chunkId: number }> {\n    const rows = this.repo.likeRows(escapeLikePattern(query), limit);\n    return rows.map((row) => {\n      const path = String(row.rel_path ?? \"\");\n      const startLine = Number(row.start_line ?? 0);\n      const endLine = Number(row.end_line ?? 0);\n      return {\n        path,\n        startLine,\n        endLine,\n        score: 0.5, // LIKE has no relevance score — use a neutral midpoint\n        textScore: 0.5,\n        snippet: truncateSnippet(String(row.text ?? \"\")),\n        source: String(row.source) as \"memory\" | \"sessions\" | \"wiki\",\n        citation: `${path}:${startLine}-${endLine}`,\n        chunkId: Number(row.id),\n      } as MemorySearchHit & { chunkId: number };\n    });\n  }\n\n  private async vectorSearchById(\n    query: string,\n    limit: number,\n  ): Promise<Map<number, { vectorScore: number; snippet?: string }>> {\n    if (!this.vectorReady || this.embedding === undefined) return new Map();\n    // T4.1 — query-vector LRU cache. The embed call is the p99 hottest\n    // path (1.5-3s per hit). Cache by sha256(query) so repeated queries\n    // skip the HTTP round-trip entirely. The embedding cache (T4.4\n    // globalEmbeddingCache) catches text-level dedup; this catches the\n    // query-level search-result dedup on top.\n    const cacheKey = createHash(\"sha256\").update(query).digest(\"hex\");\n    const cached = queryVectorCache.get(cacheKey);\n    const queryVec = cached ?? (await this.embedding.embed([query]))[0];\n    if (queryVec === undefined) return new Map();\n    if (cached === undefined) queryVectorCache.set(cacheKey, queryVec);\n    const rows = vectorSearch(this.db, queryVec, limit);\n    // sqlite-vec distance: lower = closer. Normalize to 0..1 with higher = better.\n    const out = new Map<number, { vectorScore: number }>();\n    for (const row of rows) {\n      const score = 1 / (1 + Math.max(0, row.distance));\n      out.set(row.chunk_id, { vectorScore: score });\n    }\n    return out;\n  }\n\n  private combineHybridScores(\n    textHits: Array<MemorySearchHit & { chunkId: number }>,\n    vectorHitsById: Map<number, { vectorScore: number }>,\n    options: SearchOptions,\n  ): MemorySearchHit[] {\n    const weights = resolveWeights(options);\n    const merged = this.mergeHits(textHits, vectorHitsById);\n    const combined = [...merged.values()].map((hit) =>\n      blendScores(hit, vectorHitsById.get(hit.chunkId)?.vectorScore ?? 0, weights),\n    );\n    return combined.sort((a, b) => b.score - a.score);\n  }\n\n  private mergeHits(\n    textHits: Array<MemorySearchHit & { chunkId: number }>,\n    vectorHitsById: Map<number, { vectorScore: number }>,\n  ): Map<number, MemorySearchHit & { chunkId: number }> {\n    const merged = new Map<number, MemorySearchHit & { chunkId: number }>();\n    for (const hit of textHits) merged.set(hit.chunkId, hit);\n    const missingIds = [...vectorHitsById.keys()].filter((id) => !merged.has(id));\n    if (missingIds.length > 0) {\n      for (const hit of this.fetchChunksByIds(missingIds)) {\n        merged.set(hit.chunkId, { ...hit, score: 0, textScore: 0 });\n      }\n    }\n    return merged;\n  }\n\n  private fetchChunksByIds(\n    ids: ReadonlyArray<number>,\n  ): Array<MemorySearchHit & { chunkId: number }> {\n    const rows = this.repo.chunkRowsByIds(ids);\n    return rows.map((row) => {\n      const startLine = Number(row.start_line ?? 0);\n      const endLine = Number(row.end_line ?? 0);\n      const path = String(row.rel_path);\n      return {\n        chunkId: Number(row.id),\n        path,\n        startLine,\n        endLine,\n        score: 0,\n        textScore: 0,\n        snippet: truncateSnippet(String(row.text ?? \"\")),\n        source: String(row.source) as \"memory\" | \"sessions\" | \"wiki\",\n        citation: `${path}:${startLine}-${endLine}`,\n      };\n    });\n  }\n\n  close(): void {\n    this.repo.close();\n  }\n}\n\n// Replaced by `sanitizeFts5Query` from `internal/persistence/fts5-sanitize.ts`\n// (T5.2, ADR D64). The new sanitizer is the 6-step port of Hermes'\n// `_sanitize_fts5_query` and handles hyphens/dots/underscores correctly\n// without quoting every token.\n"]}
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{ createHash } from \"node:crypto\";\n\nimport type { MemoryChunk } from \"../types.js\";\n\n/**\n * Split a markdown document into semantically meaningful chunks (ADR D1 of\n * memory-system-peer-project-parity).\n *\n * Algorithm:\n *   1. Walk lines tracking the current heading (latest `^#+ ` line).\n *   2. Split chunks at the next heading boundary AND on blank-line paragraph\n *      boundaries.\n *   3. If a single paragraph exceeds `maxChars`, split it at the nearest\n *      whitespace ≤ maxChars (word-aligned per edge-case review EC-6) —\n *      never mid-word.\n *\n * Mirrors peer-project's `chunkMarkdown` from\n * `packages/memory-host-sdk/src/host/chunk-markdown.ts`.\n *\n * @internal\n */\n\nexport interface ChunkMarkdownOptions {\n  /** Maximum chars per chunk. Default 800. */\n  maxChars?: number;\n  /** Minimum chars per chunk (avoids splintering tiny lines). Default 80. */\n  minChars?: number;\n}\n\nconst HEADING_RE = /^(#{1,6})\\s+(.+?)\\s*$/;\n\ninterface ChunkAccumulator {\n  chunks: MemoryChunk[];\n  lines: string[];\n  start: number;\n  heading: string | undefined;\n}\n\nexport function chunkMarkdown(text: string, options: ChunkMarkdownOptions = {}): MemoryChunk[] {\n  const maxChars = options.maxChars ?? 800;\n  if (text.length === 0) return [];\n  const lines = text.split(\"\\n\");\n  const acc: ChunkAccumulator = { chunks: [], lines: [], start: 1, heading: undefined };\n  for (let i = 0; i < lines.length; i++) {\n    const line = lines[i] ?? \"\";\n    const lineNumber = i + 1;\n    processLine(acc, line, lineNumber, maxChars);\n  }\n  flushAccumulator(acc, lines.length, maxChars);\n  return acc.chunks;\n}\n\nfunction processLine(\n  acc: ChunkAccumulator,\n  line: string,\n  lineNumber: number,\n  maxChars: number,\n): void {\n  const headingMatch = HEADING_RE.exec(line);\n  const isBlank = line.trim().length === 0;\n  if (headingMatch !== null && acc.lines.length > 0) {\n    flushAccumulator(acc, lineNumber - 1, maxChars);\n  }\n  if (headingMatch !== null) acc.heading = headingMatch[2];\n  acc.lines.push(line);\n  if (isBlank && acc.lines.length > 1) {\n    const joined = acc.lines.join(\"\\n\");\n    if (joined.trim().length > 0) flushAccumulator(acc, lineNumber, maxChars);\n  }\n}\n\nfunction flushAccumulator(acc: ChunkAccumulator, endLineExclusive: number, maxChars: number): void {\n  if (acc.lines.length === 0) return;\n  const chunkText = acc.lines.join(\"\\n\");\n  if (chunkText.trim().length === 0) {\n    acc.lines = [];\n    acc.start = endLineExclusive + 1;\n    return;\n  }\n  if (chunkText.length > maxChars) {\n    pushOversizedSlices(acc.chunks, chunkText, acc.start, acc.heading, maxChars);\n  } else {\n    acc.chunks.push(buildChunk(chunkText, acc.start, endLineExclusive, acc.heading));\n  }\n  acc.lines = [];\n  acc.start = endLineExclusive + 1;\n}\n\nfunction buildChunk(\n  text: string,\n  startLine: number,\n  endLine: number,\n  heading: string | undefined,\n): MemoryChunk {\n  return {\n    startLine,\n    endLine,\n    text,\n    hash: createHash(\"sha256\").update(text).digest(\"hex\"),\n    ...(heading !== undefined ? { heading } : {}),\n  };\n}\n\nfunction pushOversizedSlices(\n  chunks: MemoryChunk[],\n  text: string,\n  startLine: number,\n  heading: string | undefined,\n  maxChars: number,\n): void {\n  let remaining = text;\n  let lineCursor = startLine;\n  while (remaining.length > maxChars) {\n    const splitAt = findWordBoundarySplit(remaining, maxChars);\n    const slice = remaining.slice(0, splitAt);\n    const sliceLines = slice.split(\"\\n\").length;\n    chunks.push(buildChunk(slice, lineCursor, lineCursor + sliceLines - 1, heading));\n    remaining = remaining.slice(splitAt).replace(/^\\s+/, \"\");\n    lineCursor += sliceLines - 1;\n  }\n  if (remaining.length > 0) {\n    const sliceLines = remaining.split(\"\\n\").length;\n    chunks.push(buildChunk(remaining, lineCursor, lineCursor + sliceLines - 1, heading));\n  }\n}\n\n/**\n * Find a split point ≤ maxChars that lands on a whitespace boundary so we\n * don't slice a word in half. Falls back to maxChars if no whitespace is\n * within range (very rare — a single token > maxChars).\n */\nfunction findWordBoundarySplit(text: string, maxChars: number): number {\n  if (text.length <= maxChars) return text.length;\n  // Walk backward from maxChars looking for whitespace.\n  for (let i = maxChars; i > Math.max(0, maxChars - 200); i--) {\n    if (/\\s/.test(text[i] ?? \"x\")) return i;\n  }\n  // No whitespace within 200 chars of the cap — accept a hard split.\n  return maxChars;\n}\n","/**\n * The corpus walk: read every markdown file under the memory root, and re-chunk the ones that\n * changed.\n *\n * One of the four concerns that shared `IndexManager`, and the one with the most distinct reason to\n * change — \"which files are in the corpus and when is one stale\" is a question about the filesystem,\n * not about search or about the schema. It takes a {@link MemoryIndexRepository} rather than a\n * database, so it cannot reach past it into SQL.\n *\n * The staleness test is the content hash, NOT the mtime. mtime is written into `files` for\n * observability; a file touched without being edited must not cost a re-chunk, and a file restored\n * from a backup with an older mtime must not be skipped.\n *\n * @internal\n */\n\nimport { readFile, stat } from \"node:fs/promises\";\nimport { collectMarkdownFiles, sha256 } from \"./index-manager-helpers.js\";\nimport type { MemoryIndexRepository } from \"./index-repository.js\";\nimport { chunkMarkdown } from \"./storage/chunk-markdown.js\";\nimport type { MemoryRoot } from \"./storage/memory-root.js\";\n\nexport interface CorpusSyncCounts {\n  readonly filesScanned: number;\n  readonly filesUpdated: number;\n  readonly chunksWritten: number;\n}\n\nexport async function syncCorpus(\n  repo: MemoryIndexRepository,\n  memoryRoot: MemoryRoot,\n): Promise<CorpusSyncCounts> {\n  const files = await collectMarkdownFiles(memoryRoot);\n  const existingByPath = repo.filesByPath();\n  let filesUpdated = 0;\n  let chunksWritten = 0;\n\n  for (const entry of files) {\n    const raw = await readFile(entry.absolutePath, \"utf8\");\n    const hash = sha256(raw);\n    if (existingByPath.get(entry.absolutePath)?.hash === hash) continue;\n\n    const stats = await stat(entry.absolutePath);\n    const fileId = repo.upsertFile({\n      absPath: entry.absolutePath,\n      relPath: entry.relPath,\n      hash,\n      mtimeMs: stats.mtimeMs,\n      source: entry.source,\n    });\n    repo.deleteChunksForFile(fileId);\n    const chunks = chunkMarkdown(raw);\n    for (const chunk of chunks) repo.insertChunk({ fileId, ...chunk });\n\n    filesUpdated += 1;\n    chunksWritten += chunks.length;\n  }\n\n  return { filesScanned: files.length, filesUpdated, chunksWritten };\n}\n","/**\n * Escapes a user query for a SQL `LIKE ... ESCAPE '\\'` clause.\n *\n * The order of the three replacements is the whole correctness argument, so it is its own\n * function rather than a chain inline at the call site.\n *\n * The previous version escaped `%` and `_` but not the escape character itself, which is the\n * defect CodeQL reports as `js/incomplete-sanitization` (alerts #14, #15). Two things went wrong,\n * and the second is the one that matters:\n *\n *   \"back\\slash\"  ->  \"%back\\slash%\"    the `\\s` is an escape of `s`, which LIKE does not define\n *   \"x\\%y\"        ->  \"%x\\\\%y%\"         the inserted `\\` is consumed escaping the user's `\\`,\n *                                       leaving `%` UNESCAPED — a wildcard the caller did not\n *                                       write, matching anything between `x\\` and `y`\n *\n * The second is wildcard injection: a search for a literal string silently becomes a scan. In a\n * memory index that is both a wrong answer and a way to pull back rows the query never asked for.\n *\n * Escaping the backslash FIRST is what fixes it — afterwards every `\\` in the string is one this\n * function put there, so the later replacements cannot collide with a user-supplied one.\n */\nexport function escapeLikePattern(query: string): string {\n  return `%${query.replace(/\\\\/g, \"\\\\\\\\\").replace(/%/g, \"\\\\%\").replace(/_/g, \"\\\\_\")}%`;\n}\n","/**\n * Common `MemoryIndex` interface shared between the SQLite-backed\n * `IndexManager` (default) and the Lance-backed adapter (ADR D43, shipped\n * v1.4.0 via lancedb-backend-ship-v1-1 plan).\n *\n * Consumers (`local-agent-memory.ts`, `active-memory.ts`, `tools.ts`,\n * `runActiveMemory`) only ever call `sync()`, `search()`, `status()`,\n * `close()` — the union of those four methods is the portable surface.\n *\n * Why a separate file (vs declaring inline in `index-manager.ts`)? D43\n * promised \"extract an abstract `MemoryIndex` interface in\n * `internal/memory/index-interface.ts`\". Keeping the contract physically\n * separated from one of its implementations preserves OCP — future\n * backends (Qdrant, PGVector) can land without touching IndexManager.\n *\n * @internal\n */\n\nimport type { IndexStatus, MemorySearchHit, SearchOptions } from \"./index-manager-contract.js\";\n\n// Re-export consumer-facing shapes for stable internal import paths.\nexport type { IndexStatus, MemorySearchHit, SearchOptions };\n\nexport interface SyncResult {\n  filesScanned: number;\n  filesUpdated: number;\n  chunksWritten: number;\n  chunksEmbedded: number;\n  /**\n   * Whether this backend actually walked a corpus.\n   *\n   * REQUIRED, not optional, and that is the point. `MemoryIndex` has two implementers and consumers\n   * hold the interface: `IndexManager` walks files, and `LanceMemoryAdapter` has no corpus to walk —\n   * it is a vector store fed by explicit `addFacts`. The adapter used to answer with a frozen\n   * all-zeros result, which a caller cannot tell apart from a real sync that found nothing to do.\n   * The comment above it stated that as the intention (\"so callers' existing logging does not\n   * break\"), which is the substitution defect written down as a feature.\n   *\n   * A required boolean forces every implementer to say which case it is in, and forces the compiler\n   * to notice a new implementer that forgot. An optional flag would have let the next backend\n   * reproduce the silence.\n   */\n  supported: boolean;\n}\n\n/**\n * Common search-options parser used by both `IndexManager.search` and\n * `LanceMemoryAdapter.search`. Returns the normalized cap + minimum-score\n * floor — eliminates jscpd duplication while keeping per-backend search\n * logic distinct.\n */\nexport function parseSearchOptions(options: SearchOptions = {}): {\n  maxResults: number;\n  minScore: number;\n} {\n  return {\n    maxResults: Math.max(1, options.maxResults ?? 10),\n    minScore: options.minScore ?? 0,\n  };\n}\n\nexport interface MemoryIndex {\n  /**\n   * Walk the memory corpus + reindex changed files. Lance backend has no\n   * markdown corpus to walk — its adapter returns zero counts (no-op) and\n   * relies on explicit `addFact` calls instead.\n   */\n  sync(): Promise<SyncResult>;\n\n  /**\n   * Semantic + textual search over the indexed corpus. Both backends\n   * return the same `MemorySearchHit[]` shape; Lance leaves `textScore`\n   * undefined (vector-only — no FTS5 layer).\n   */\n  search(query: string, options?: SearchOptions): Promise<MemorySearchHit[]>;\n\n  /** Snapshot of the index health (backend type + counts). */\n  status(): IndexStatus;\n\n  /** Release native handles. Idempotent. */\n  close(): Promise<void> | void;\n}\n","/**\n * `LanceMemoryAdapter` — wraps `LanceIndex` to expose the common\n * `MemoryIndex` interface (sync/search/status/close) so consumers of\n * `IndexManager.open({ backend: \"lance\" })` get a drop-in replacement\n * for the SQLite-backed `IndexManager`.\n *\n * Semantic deltas vs SQLite (documented so callers know what to expect):\n *\n *  - `sync()` is a NO-OP. Lance is a pure vector store — there is no\n *    markdown corpus to crawl. It returns zero counts with `supported: false`\n *    so the result is not mistaken for a sync that found nothing. Consumers\n *    writing facts hold a `LanceIndex` and call `addFacts` on it; the adapter\n *    does not hand its adaptee out.\n *  - `search()` is HYBRID, not vector-only. Lance supplies the vector distance\n *    and `translateLanceHit` adds a client-side term-overlap ratio (T4.5), so\n *    `textScore` is a real number in 0..1 and `score` is `0.7 * vectorScore +\n *    0.3 * textScore` — never `=== vectorScore`. This block said the opposite\n *    for as long as T4.5 has been shipped, while the docblock 90 lines below\n *    described the change correctly, so the two halves of one file disagreed\n *    and the header is the half a caller reads.\n *  - `status()` reports `backend: \"hybrid\"` only when an embedding runtime\n *    is wired (always the case for Lance — embedding is required at open).\n *    Both counts are 0 with `countsExact: false`: the port declares `status()`\n *    synchronous and Lance's row count is async, so nothing can be measured\n *    here. The zeros are placeholders and the flag says which.\n *\n * Ships with the lancedb-backend-ship-v1-1 plan (close D12, supersede via\n * D43). v1.4.0 of `@theokit/sdk`.\n *\n * @internal\n */\n\nimport type { IndexStatus, MemorySearchHit, SearchOptions } from \"./index-manager-contract.js\";\nimport { type HybridWeights, resolveWeights } from \"./index-manager-helpers.js\";\nimport type { LanceIndex } from \"./lance-index.js\";\nimport { type MemoryIndex, parseSearchOptions, type SyncResult } from \"./memory-index.js\";\n\n/**\n * Default namespace used when consumers call `search()` without specifying\n * one. The SQLite `IndexManager` does not surface namespace in its public\n * `search()` signature either — both backends therefore behave consistently\n * under the \"single-workspace, single-namespace\" assumption that v1.4 ships.\n *\n * v1.5 candidate: surface `namespace` in `SearchOptions` (additive — no\n * breaking change) so multi-tenant Lance consumers can scope queries.\n */\nconst DEFAULT_NAMESPACE = \"default\";\n\n/**\n * Lance has no corpus to walk, and the result now SAYS so.\n *\n * The counts stay zero — inventing numbers would trade one false claim for another. What changed is\n * `supported: false`: an all-zeros result was previously indistinguishable from a real sync that\n * found nothing to reindex, and the comment above this constant used to present that as the goal\n * (\"so callers' existing logging does not break\"). A caller can now tell \"nothing to do\" from\n * \"this backend does not do this\".\n */\nconst UNSUPPORTED_SYNC_RESULT: SyncResult = Object.freeze({\n  filesScanned: 0,\n  filesUpdated: 0,\n  chunksWritten: 0,\n  chunksEmbedded: 0,\n  supported: false,\n});\n\nexport class LanceMemoryAdapter implements MemoryIndex {\n  constructor(private readonly inner: LanceIndex) {}\n\n  /**\n   * Not applicable to Lance — see file header. Returns zero counts with `supported: false` so a\n   * caller can distinguish this from a real sync that found nothing.\n   */\n  async sync(): Promise<SyncResult> {\n    return UNSUPPORTED_SYNC_RESULT;\n  }\n\n  // jscpd:ignore-start — search signature + early-out is idiomatic\n  // overlap with IndexManager.search; further factoring would hurt\n  // readability (the bodies diverge sharply right after).\n  async search(query: string, options: SearchOptions = {}): Promise<MemorySearchHit[]> {\n    if (query.trim().length === 0) return [];\n    const { maxResults, minScore } = parseSearchOptions(options);\n    // jscpd:ignore-end\n    const lanceHits = await this.inner.search(query, {\n      namespace: DEFAULT_NAMESPACE,\n      limit: maxResults * 2,\n      ...(options.sources !== undefined ? { sources: options.sources } : {}),\n    });\n    return lanceHits\n      .filter((h) => h.score >= minScore)\n      .slice(0, maxResults)\n      .map((h) => translateLanceHit(h, query, resolveWeights(options)));\n  }\n\n  status(): IndexStatus {\n    // The Lance API is async and `status()` is not, so no count can be taken here. The zeros are\n    // placeholders and `countsExact: false` says so — previously they were indistinguishable from a\n    // measured empty index, so a caller testing `chunksIndexed > 0` got a false negative on every\n    // run regardless of how many rows the table held.\n    //\n    // There is deliberately no escape hatch. This class used to carry `unwrap(): LanceIndex`,\n    // documented as being for \"the migration tool, benchmark script\" — measured 2026-09-01, it had\n    // ZERO callers anywhere in the monorepo, including those two, which hold a `LanceIndex`\n    // directly and never open the adapter. What it did have was this comment pointing at it, which\n    // made the leak read as the supported way to work around the limitation. A caller that needs\n    // the real count needs `LanceIndex`, and the honest way to get one is to open one.\n    return {\n      backend: \"hybrid\",\n      filesIndexed: 0,\n      chunksIndexed: 0,\n      countsExact: false,\n    };\n  }\n\n  async close(): Promise<void> {\n    await this.inner.close();\n  }\n}\n\n/**\n * Translate `LanceSearchHit` to `MemorySearchHit`. Field mapping:\n *\n *   - `id` → `path` (Lance has no file-system provenance; use opaque id)\n *   - `text` → `snippet` (truncated to 200 chars matching IndexManager convention)\n *   - `score` → combined (0.7 × vectorScore + 0.3 × textScore)\n *   - `vectorScore` → from Lance's distance metric\n *   - `textScore` → T4.5 client-side term-overlap ratio (removes ADR D43 vector-only caveat)\n *   - `source` → `source`\n *   - synthetic `startLine: 0, endLine: 0` (Lance has no line info)\n *   - synthetic `citation: id` (no path:line citation available)\n */\nfunction translateLanceHit(\n  hit: { id: string; text: string; source: \"memory\" | \"sessions\" | \"wiki\"; score: number },\n  query: string | undefined,\n  weights: HybridWeights,\n): MemorySearchHit {\n  const textScore = query !== undefined ? computeTermOverlapScore(query, hit.text) : 0;\n  const vectorScore = hit.score;\n  // The CALLER's weights, through the same `resolveWeights` the SQLite path uses. These were the\n  // literals 0.7 and 0.3, so a caller that tuned `vectorWeight` / `textWeight` had its tuning applied\n  // on one backend and silently dropped on the other — the shape of failure that makes a swap-in\n  // backend untrustworthy. The defaults differ between the two (0.6/0.4 from resolveWeights, versus\n  // the 0.7/0.3 written here), so unweighted results move slightly; that is the point, since one of\n  // the two numbers was not the contract's.\n  const combined =\n    (vectorScore * weights.vectorWeight + textScore * weights.textWeight) / weights.total;\n  return {\n    path: hit.id,\n    startLine: 0,\n    endLine: 0,\n    score: combined,\n    textScore,\n    vectorScore,\n    snippet: hit.text.slice(0, 200),\n    source: hit.source,\n    citation: hit.id,\n  };\n}\n\n/**\n * T4.5 — Client-side term-overlap score for Lance hybrid search.\n * Counts what fraction of query terms appear in the text (case-insensitive).\n * Simple but effective for re-ranking vector hits by lexical relevance.\n * Returns 0..1 where 1 = all query terms present.\n */\nfunction computeTermOverlapScore(query: string, text: string): number {\n  const queryTerms = query\n    .toLowerCase()\n    .split(/\\s+/)\n    .filter((t) => t.length > 1);\n  if (queryTerms.length === 0) return 0;\n  const textLower = text.toLowerCase();\n  const matched = queryTerms.filter((term) => textLower.includes(term)).length;\n  return matched / queryTerms.length;\n}\n","/**\n * Dispatch helpers for `IndexManager.open`. Extracted to keep\n * `index-manager.ts` under the G8 400-LoC budget (lancedb-backend-ship-v1-1).\n *\n * @internal\n */\n\nimport { ConfigurationError } from \"../../errors.js\";\nimport type { MemoryBackend, OpenIndexOptions } from \"./index-manager-contract.js\";\nimport { LanceIndex } from \"./lance-index.js\";\nimport { LanceMemoryAdapter } from \"./lance-memory-adapter.js\";\nimport type { MemoryIndex } from \"./memory-index.js\";\n\n/** Valid backend identifiers — runtime guard against TS-narrowing escapes (EC-1). */\nexport const VALID_BACKENDS: readonly MemoryBackend[] = [\"sqlite-vec\", \"lance\"];\n\n/**\n * EC-1: runtime guard for `opts.backend`. TS union is compile-time only;\n * consumers passing JS `as any` typos must hit a typed error, not silent\n * SQLite fallback.\n */\nexport function assertValidBackend(backend: string): asserts backend is MemoryBackend {\n  if (!VALID_BACKENDS.includes(backend as MemoryBackend)) {\n    throw new ConfigurationError(\n      `Invalid memory backend \"${backend}\". Valid values: ${VALID_BACKENDS.join(\", \")}.`,\n      { code: \"invalid_memory_backend\" },\n    );\n  }\n}\n\n/**\n * Lance-path open. Throws `lance_requires_embedding` when no embedding\n * runtime is provided (Lance is vector-only — no FTS fallback).\n * Surfaces `lance_backend_unavailable` from LanceIndex.open when peer\n * dep is absent.\n */\nexport async function openLanceIndex(opts: OpenIndexOptions): Promise<MemoryIndex> {\n  if (opts.embedding === undefined) {\n    throw new ConfigurationError(\n      \"Lance backend requires an embedding runtime. Pass `embedding: { provider, model, apiKey }` in Memory.create options (or omit `backend` to use SQLite default).\",\n      { code: \"lance_requires_embedding\" },\n    );\n  }\n  const lance = await LanceIndex.open({\n    cwd: opts.cwd,\n    embedding: opts.embedding,\n    ...(opts.filePath !== undefined ? { storagePath: opts.filePath } : {}),\n  });\n  return new LanceMemoryAdapter(lance);\n}\n","/**\n * Every SQL string the memory index runs, in one place.\n *\n * `IndexManager` answered four questions with four independent reasons to change: the corpus walk,\n * the BM25-to-score normalisation, the vector-cache strategy, and the schema. This is the fourth.\n * Changing a column, an index or a join is now a change to THIS file, and the caller above it reads\n * as search logic rather than as SQL with scoring in between.\n *\n * The row-to-`MemorySearchHit` mapping deliberately stays with the caller: turning a row into a hit\n * involves a score, a snippet and a citation, none of which the schema knows about. Keeping it here\n * would move the normalisation into the repository and re-create the same mixture one layer down.\n *\n * Rows come back as `Record<string, unknown>` for the same reason: the repository knows what it\n * SELECTed, not what the caller will make of it.\n *\n * @internal\n */\n\nimport type { MemoryDb } from \"./index-db.js\";\n\n/** What `files` holds for one path — the pair the corpus walk compares against disk. */\nexport interface FileRow {\n  readonly id: number;\n  readonly hash: string;\n}\n\nexport class MemoryIndexRepository {\n  constructor(private readonly db: MemoryDb) {}\n\n  counts(): { files: number; chunks: number } {\n    const files = this.db.prepare(\"SELECT COUNT(*) as n FROM files\").get() ?? { n: 0 };\n    const chunks = this.db.prepare(\"SELECT COUNT(*) as n FROM chunks\").get() ?? { n: 0 };\n    return { files: Number(files.n ?? 0), chunks: Number(chunks.n ?? 0) };\n  }\n\n  /**\n   * FTS5 match, ordered by bm25. THROWS on an FTS5 error rather than swallowing it — whether that\n   * error means \"CJK input the default tokenizer cannot segment\" or \"the table is missing\" is a\n   * judgement the caller makes, and it makes it differently for each.\n   */\n  ftsRows(sanitizedQuery: string, limit: number): Array<Record<string, unknown>> {\n    return this.db\n      .prepare(\n        `SELECT chunks.id as id, files.rel_path as rel_path, files.source as source,\n                chunks.start_line as start_line, chunks.end_line as end_line,\n                chunks.text as text, bm25(chunks_fts) as bm25_score\n         FROM chunks_fts\n         JOIN chunks ON chunks_fts.rowid = chunks.id\n         JOIN files  ON chunks.file_id = files.id\n         WHERE chunks_fts MATCH ?\n         ORDER BY bm25_score\n         LIMIT ?`,\n      )\n      .all(sanitizedQuery, limit);\n  }\n\n  /** Substring scan — the CJK fallback. No relevance score exists here; the caller supplies one. */\n  likeRows(escapedPattern: string, limit: number): Array<Record<string, unknown>> {\n    return this.db\n      .prepare(\n        `SELECT chunks.id as id, files.rel_path as rel_path, files.source as source,\n                chunks.start_line as start_line, chunks.end_line as end_line,\n                chunks.text as text\n         FROM chunks\n         JOIN files ON chunks.file_id = files.id\n         WHERE chunks.text LIKE ? ESCAPE '\\\\'\n         LIMIT ?`,\n      )\n      .all(escapedPattern, limit) as Array<Record<string, unknown>>;\n  }\n\n  /** Hydrate the chunks a vector search returned by id. Empty in, empty out — no query runs. */\n  chunkRowsByIds(ids: ReadonlyArray<number>): Array<Record<string, unknown>> {\n    if (ids.length === 0) return [];\n    const placeholders = ids.map(() => \"?\").join(\",\");\n    return this.db\n      .prepare(\n        `SELECT chunks.id as id, files.rel_path as rel_path, files.source as source,\n                chunks.start_line as start_line, chunks.end_line as end_line,\n                chunks.text as text\n         FROM chunks JOIN files ON chunks.file_id = files.id\n         WHERE chunks.id IN (${placeholders})`,\n      )\n      .all(...ids);\n  }\n\n  /** Absolute path → its row, for the corpus walk to compare hashes against disk. */\n  filesByPath(): Map<string, FileRow> {\n    const rows = this.db.prepare(\"SELECT id, path, hash FROM files\").all() as Array<{\n      id: number;\n      path: string;\n      hash: string;\n    }>;\n    return new Map(rows.map((row) => [row.path, { id: row.id, hash: row.hash }]));\n  }\n\n  upsertFile(file: {\n    absPath: string;\n    relPath: string;\n    hash: string;\n    mtimeMs: number;\n    source: \"memory\" | \"wiki\" | \"sessions\";\n  }): number {\n    const row = this.db\n      .prepare(\n        `INSERT INTO files (path, rel_path, mtime, hash, source) VALUES (?, ?, ?, ?, ?)\n         ON CONFLICT(path) DO UPDATE SET hash = excluded.hash, mtime = excluded.mtime, source = excluded.source\n         RETURNING id`,\n      )\n      .get(file.absPath, file.relPath, Math.floor(file.mtimeMs), file.hash, file.source) as {\n      id: number;\n    };\n    return row.id;\n  }\n\n  deleteChunksForFile(fileId: number): void {\n    this.db.prepare(\"DELETE FROM chunks WHERE file_id = ?\").run(fileId);\n  }\n\n  insertChunk(chunk: {\n    fileId: number;\n    startLine: number;\n    endLine: number;\n    text: string;\n    hash: string;\n  }): void {\n    this.db\n      .prepare(\n        \"INSERT INTO chunks (file_id, start_line, end_line, text, hash) VALUES (?, ?, ?, ?, ?)\",\n      )\n      .run(chunk.fileId, chunk.startLine, chunk.endLine, chunk.text, chunk.hash);\n  }\n\n  close(): void {\n    this.db.close();\n  }\n}\n","import { ConfigurationError } from \"../../errors.js\";\nimport type { MemoryDb } from \"./index-db.js\";\n\n/**\n * Load the `sqlite-vec` extension into an opened SQLite connection.\n *\n * Wraps the native `load(db)` call from the `sqlite-vec` npm package with a\n * typed error path (EC-8 of the edge-case review) so callers see a\n * `sqlite_vec_unavailable` ConfigurationError instead of a raw native error.\n *\n * @internal\n */\nexport async function loadSqliteVecExtension(db: MemoryDb): Promise<void> {\n  try {\n    const mod = await import(\"sqlite-vec\");\n    const loadFn = (mod as { load?: (db: unknown) => void }).load;\n    if (typeof loadFn !== \"function\") {\n      throw new Error(\"sqlite-vec module exposes no `load` export\");\n    }\n    loadFn(db);\n  } catch (cause) {\n    const message = cause instanceof Error ? cause.message : String(cause);\n    throw new ConfigurationError(\n      `sqlite-vec extension unavailable. Install \\`sqlite-vec\\` and ensure the native binary matches your Node + OS. Cause: ${message}`,\n      { code: \"sqlite_vec_unavailable\", cause },\n    );\n  }\n}\n","import type { EmbeddingRuntime } from \"./embedding-adapter.js\";\nimport type { MemoryDb } from \"./index-db.js\";\n\n/**\n * Vector index helpers (ADR D2 + D4 of memory-system-peer-project-parity).\n *\n * Embeddings live in `embeddings(chunk_id, vec)` — a `vec0` virtual table\n * provided by the sqlite-vec extension. Embedding identity (providerId +\n * model + dimension) lives in the `meta` table; mismatches force a full\n * re-embed sweep (EC-1).\n *\n * @internal\n */\n\nexport const META_KEY_PROVIDER_ID = \"embedding.providerId\";\nexport const META_KEY_MODEL = \"embedding.model\";\nexport const META_KEY_DIMENSION = \"embedding.dimension\";\n\nexport interface EmbeddingIdentity {\n  providerId: string;\n  model: string;\n  dimension: number;\n}\n\nexport function readEmbeddingIdentity(db: MemoryDb): EmbeddingIdentity | undefined {\n  const get = (key: string): string | undefined => {\n    const row = db.prepare(\"SELECT value FROM meta WHERE key = ?\").get(key);\n    return row !== undefined ? String(row.value) : undefined;\n  };\n  const providerId = get(META_KEY_PROVIDER_ID);\n  const model = get(META_KEY_MODEL);\n  const dimRaw = get(META_KEY_DIMENSION);\n  if (providerId === undefined || model === undefined || dimRaw === undefined) return undefined;\n  const dimension = Number(dimRaw);\n  if (!Number.isFinite(dimension) || dimension <= 0) return undefined;\n  return { providerId, model, dimension };\n}\n\nexport function writeEmbeddingIdentity(db: MemoryDb, identity: EmbeddingIdentity): void {\n  const stmt = db.prepare(\n    \"INSERT INTO meta (key, value) VALUES (?, ?) ON CONFLICT(key) DO UPDATE SET value = excluded.value\",\n  );\n  stmt.run(META_KEY_PROVIDER_ID, identity.providerId);\n  stmt.run(META_KEY_MODEL, identity.model);\n  stmt.run(META_KEY_DIMENSION, String(identity.dimension));\n}\n\nexport function identityMatches(a: EmbeddingIdentity, b: EmbeddingIdentity): boolean {\n  return a.providerId === b.providerId && a.model === b.model && a.dimension === b.dimension;\n}\n\nexport function dropVectorIndex(db: MemoryDb): void {\n  db.exec(\"DROP TABLE IF EXISTS embeddings\");\n}\n\nexport function createVectorIndex(db: MemoryDb, dimension: number): void {\n  db.exec(`CREATE VIRTUAL TABLE IF NOT EXISTS embeddings USING vec0(\n    chunk_id INTEGER PRIMARY KEY,\n    vec FLOAT[${dimension}]\n  )`);\n}\n\n/** Pack a Float32Array into a Buffer suitable for sqlite-vec BLOB binding. */\nexport function packVector(vec: ReadonlyArray<number>): Buffer {\n  const f32 = new Float32Array(vec.length);\n  for (let i = 0; i < vec.length; i++) f32[i] = vec[i] ?? 0;\n  return Buffer.from(f32.buffer);\n}\n\nexport function upsertEmbedding(db: MemoryDb, chunkId: number, vec: ReadonlyArray<number>): void {\n  // sqlite-vec vec0 virtual tables don't support UPSERT — emulate via\n  // DELETE-then-INSERT. vec0 REJECTS JS Number for chunk_id columns; it\n  // requires BigInt binding. Verified via repro against vec0 v0.1.9.\n  const id = BigInt(chunkId);\n  db.prepare(\"DELETE FROM embeddings WHERE chunk_id = ?\").run(id);\n  db.prepare(\"INSERT INTO embeddings (chunk_id, vec) VALUES (?, ?)\").run(id, packVector(vec));\n}\n\nexport interface VectorHitRow {\n  chunk_id: number;\n  distance: number;\n}\n\nexport function vectorSearch(\n  db: MemoryDb,\n  query: ReadonlyArray<number>,\n  k: number,\n): VectorHitRow[] {\n  // sqlite-vec returns distance (lower = closer). Use KNN syntax. k needs\n  // a BigInt-typed binding too.\n  const rows = db\n    .prepare(\n      `SELECT chunk_id, distance FROM embeddings\n       WHERE vec MATCH ? AND k = ?\n       ORDER BY distance`,\n    )\n    .all(packVector(query), BigInt(k));\n  return rows.map((row) => ({ chunk_id: Number(row.chunk_id), distance: Number(row.distance) }));\n}\n\nexport interface EmbedAllArgs {\n  db: MemoryDb;\n  runtime: EmbeddingRuntime;\n}\n\n/** Embed every chunk that doesn't yet have a vector. */\nexport async function embedMissingChunks(args: EmbedAllArgs): Promise<number> {\n  const rows = args.db\n    .prepare(\n      `SELECT chunks.id as id, chunks.text as text\n       FROM chunks\n       LEFT JOIN embeddings ON embeddings.chunk_id = chunks.id\n       WHERE embeddings.chunk_id IS NULL`,\n    )\n    .all();\n  if (rows.length === 0) return 0;\n  const normalized = rows.map((row) => ({ id: Number(row.id), text: String(row.text ?? \"\") }));\n  const vectors = await args.runtime.embed(normalized.map((r) => r.text));\n  for (let i = 0; i < normalized.length; i++) {\n    const row = normalized[i];\n    const vector = vectors[i];\n    if (row === undefined || vector === undefined) continue;\n    upsertEmbedding(args.db, row.id, vector);\n  }\n  return normalized.length;\n}\n","import { createHash } from \"node:crypto\";\nimport { diag } from \"../diagnostics.js\";\nimport { containsCjk, sanitizeFts5Query } from \"../persistence/fts5-sanitize.js\";\nimport { syncCorpus } from \"./corpus-sync.js\";\nimport type { EmbeddingRuntime } from \"./embedding-adapter.js\";\nimport { LruEmbeddingCache } from \"./embedding-cache.js\";\nimport { escapeLikePattern } from \"./escape-like-pattern.js\";\nimport { defaultIndexPath, type MemoryDb, openMemoryDb } from \"./index-db.js\";\nimport { assertValidBackend, openLanceIndex } from \"./index-manager-dispatch.js\";\nimport { blendScores, resolveWeights, truncateSnippet } from \"./index-manager-helpers.js\";\nimport { MemoryIndexRepository } from \"./index-repository.js\";\nimport type { SyncResult } from \"./memory-index.js\";\nimport { type MemoryIndex, parseSearchOptions } from \"./memory-index.js\";\nimport { loadSqliteVecExtension } from \"./sqlite-vec-loader.js\";\nimport { type MemoryRoot, memoryIndexRoot, resolveMemoryRoot } from \"./storage/memory-root.js\";\n\n// T4.1 — query-vector LRU cache (DR4 finding #1). Keyed by\n// sha256(query); caches the embedding vector so repeated search\n// queries skip the HTTP round-trip (p99 1.5-3s → ~0ms on hit).\n// Process-wide singleton with bounded capacity (default 2000 queries).\nconst queryVectorCache = new LruEmbeddingCache(2000);\n\nimport {\n  createVectorIndex,\n  dropVectorIndex,\n  embedMissingChunks,\n  identityMatches,\n  readEmbeddingIdentity,\n  vectorSearch,\n  writeEmbeddingIdentity,\n} from \"./vec-index.js\";\n\n/**\n * Memory index manager (ADR D2). FTS5-only at Phase 3; vector index lands in\n * Phase 5.\n *\n * Lifecycle:\n *   const idx = await IndexManager.open({ cwd });\n *   await idx.sync();\n *   const hits = await idx.search(\"query\");\n *   idx.close();\n *\n * @internal\n */\n\n// T2.1 / ADR D433 — these types now live in `index-manager-contract.ts`\n// to break the 3-cycle memory cluster. Re-exported here for back-compat\n// with downstream importers that historically pulled from this file.\nexport type {\n  IndexStatus,\n  MemoryBackend,\n  MemorySearchHit,\n  OpenIndexOptions,\n  SearchOptions,\n} from \"./index-manager-contract.js\";\n\nimport type {\n  IndexStatus,\n  MemorySearchHit,\n  OpenIndexOptions,\n  SearchOptions,\n} from \"./index-manager-contract.js\";\n\nexport class IndexManager implements MemoryIndex {\n  private lastSyncMs: number | undefined;\n  private vectorReady = false;\n\n  /** Every SQL string this class used to hold. See `index-repository.ts` for why it moved. */\n  private readonly repo: MemoryIndexRepository;\n\n  private constructor(\n    private readonly memoryRoot: MemoryRoot,\n    private readonly db: MemoryDb,\n    private readonly embedding: EmbeddingRuntime | undefined,\n  ) {\n    this.repo = new MemoryIndexRepository(db);\n  }\n\n  /**\n   * Open a memory index. Dispatches to SQLite (default) or Lance (opt-in\n   * via `backend: \"lance\"`). See `openLanceInternal` for Lance-specific\n   * preconditions + typed errors.\n   */\n  static async open(opts: OpenIndexOptions & { backend: \"lance\" }): Promise<MemoryIndex>;\n  static async open(\n    opts: Omit<OpenIndexOptions, \"backend\"> | (OpenIndexOptions & { backend?: \"sqlite-vec\" }),\n  ): Promise<IndexManager>;\n  static async open(opts: OpenIndexOptions): Promise<MemoryIndex> {\n    const backend = opts.backend ?? \"sqlite-vec\";\n    assertValidBackend(backend);\n    if (backend === \"lance\") return await openLanceIndex(opts);\n    return await IndexManager.openSqliteInternal(opts);\n  }\n\n  /** Internal SQLite-path open. Renamed from previous public `open`. */\n  private static async openSqliteInternal(opts: OpenIndexOptions): Promise<IndexManager> {\n    const memoryRoot = opts.memoryRoot ?? resolveMemoryRoot(opts.cwd);\n    // What gets INDEXED and where the DATABASE lives are two decisions, and they diverge —\n    // for one directory, not for every directory (theokit-sdk#554).\n    //\n    // The database stays in the project store when `memory.directory` names the directory the\n    // Claude Code CLI manages, because that CLI has no index format and a binary there is an\n    // artefact the partner does not understand inside a directory it owns\n    // (`docs/memory-decisions.md` § 1). That argument covers exactly that directory.\n    //\n    // It does not reach a plain directory, and treating every root as if it did leaked: the index\n    // holds `chunks.text` — the fact TEXT, which FTS5 needs — so leaving it in `<cwd>` while the\n    // facts move writes one operator's personal store into every repository the agent runs in.\n    const filePath = opts.filePath ?? defaultIndexPath(memoryIndexRoot(opts.cwd, memoryRoot));\n    const db = await openMemoryDb({ filePath });\n    const manager = new IndexManager(memoryRoot, db, opts.embedding);\n    if (opts.embedding !== undefined) await manager.initVectorBackend(opts.embedding);\n    return manager;\n  }\n\n  private async initVectorBackend(runtime: EmbeddingRuntime): Promise<void> {\n    await loadSqliteVecExtension(this.db);\n    const currentIdentity = {\n      providerId: runtime.id,\n      model: runtime.model,\n      dimension: runtime.dimension,\n    };\n    const persisted = readEmbeddingIdentity(this.db);\n    if (persisted !== undefined && !identityMatches(persisted, currentIdentity)) {\n      // EC-1: dimension/model/provider changed — drop the vector index and\n      // force a full re-embed on next sync.\n      dropVectorIndex(this.db);\n    }\n    createVectorIndex(this.db, runtime.dimension);\n    writeEmbeddingIdentity(this.db, currentIdentity);\n    this.vectorReady = true;\n  }\n\n  /** Walk the memory corpus + (re)index changed files. */\n  // Declares `Promise<SyncResult>` rather than repeating the shape inline. The inline version was a\n  // structural copy of the interface it implements, so widening `SyncResult` with `supported` left\n  // this method silently no longer assignable to `MemoryIndex` — the compiler caught it, which is\n  // the argument for naming the type instead of restating it.\n  async sync(): Promise<SyncResult> {\n    const counts = await syncCorpus(this.repo, this.memoryRoot);\n    let chunksEmbedded = 0;\n    if (this.vectorReady && this.embedding !== undefined) {\n      chunksEmbedded = await embedMissingChunks({ db: this.db, runtime: this.embedding });\n    }\n    this.lastSyncMs = Date.now();\n    // `supported: true` — this implementer genuinely walks the corpus, so its counts are a\n    // measurement rather than a placeholder. See SyncResult.supported.\n    return { ...counts, chunksEmbedded, supported: true };\n  }\n\n  async search(query: string, options: SearchOptions = {}): Promise<MemorySearchHit[]> {\n    if (query.trim().length === 0) return [];\n    const { maxResults, minScore } = parseSearchOptions(options);\n    const textHits = this.ftsSearch(query, maxResults * 2);\n    const vectorHitsById = await this.vectorSearchById(query, maxResults * 2);\n    const combined = this.combineHybridScores(textHits, vectorHitsById, options);\n    return combined\n      .filter((h) => h.score >= minScore)\n      .filter((h) => options.sources === undefined || options.sources.includes(h.source))\n      .slice(0, maxResults);\n  }\n\n  status(): IndexStatus {\n    const { files, chunks } = this.repo.counts();\n    const status: IndexStatus = {\n      backend: this.vectorReady ? \"hybrid\" : \"fts-only\",\n      filesIndexed: files,\n      chunksIndexed: chunks,\n      // Counted with SELECT COUNT(*) just above — these are measurements, not placeholders.\n      countsExact: true,\n    };\n    if (this.lastSyncMs !== undefined) status.lastSyncMs = this.lastSyncMs;\n    return status;\n  }\n\n  // ───── search internals ──────────────────────────────────────────────\n\n  private ftsSearch(query: string, limit: number): Array<MemorySearchHit & { chunkId: number }> {\n    // EC-3: short-circuit when sanitizer reduces input to empty string.\n    // Calling `MATCH ''` would error inside FTS5 on some SQLite versions.\n    const sanitized = sanitizeFts5Query(query);\n    if (sanitized.length === 0) return [];\n    let rows: Array<Record<string, unknown>> = [];\n    try {\n      rows = this.repo.ftsRows(sanitized, limit);\n    } catch (err) {\n      // T4.8 — CJK fallback: FTS5's default tokenizer chokes on CJK characters (no word boundaries).\n      // Instead of returning empty, fall back to a LIKE search, which handles CJK correctly (slower\n      // but correct). ADR D64 documents the trigram-routing deferral.\n      //\n      // GATED on the condition it was written for, and reported otherwise. The catch used to be\n      // unconditional, so a corrupt database, a missing `chunks_fts` table (which happens when FTS5\n      // is unavailable at open) and a disk error all became a LIKE scan over the whole table\n      // returning plausible hits at a hardcoded 0.5 — degraded relevance with no signal that\n      // anything had failed. The fallback still runs, because returning nothing would be worse; what\n      // changes is that the operator learns the query is not being answered by the index.\n      if (!containsCjk(query)) {\n        diag(\n          `memory FTS query failed for a non-CJK query and fell back to a LIKE scan — relevance is ` +\n            `degraded and the index may be missing or corrupt: ${\n              err instanceof Error ? err.message : String(err)\n            }`,\n        );\n      }\n      return this.likeSearchFallback(query, limit);\n    }\n    return rows.map((row) => {\n      const bm25 = Number(row.bm25_score ?? 0);\n      const textScore = bm25 < 0 ? 1 / (1 + Math.abs(bm25)) : 1 / (1 + bm25);\n      const startLine = Number(row.start_line ?? 0);\n      const endLine = Number(row.end_line ?? 0);\n      const path = String(row.rel_path);\n      return {\n        path,\n        startLine,\n        endLine,\n        score: textScore,\n        textScore,\n        snippet: truncateSnippet(String(row.text ?? \"\")),\n        source: String(row.source) as \"memory\" | \"sessions\" | \"wiki\",\n        citation: `${path}:${startLine}-${endLine}`,\n        // sneak the chunk id through for the hybrid join below\n        // (cast away later)\n        chunkId: Number(row.id),\n      } as MemorySearchHit & { chunkId: number };\n    });\n  }\n\n  /**\n   * T4.8 — LIKE-based fallback for CJK and other scripts that FTS5's\n   * default tokenizer cannot segment. Slower than FTS5 (full table scan)\n   * but correct for any Unicode input. Returns the same shape as\n   * `ftsSearch` so callers are unaware of the fallback.\n   */\n  private likeSearchFallback(\n    query: string,\n    limit: number,\n  ): Array<MemorySearchHit & { chunkId: number }> {\n    const rows = this.repo.likeRows(escapeLikePattern(query), limit);\n    return rows.map((row) => {\n      const path = String(row.rel_path ?? \"\");\n      const startLine = Number(row.start_line ?? 0);\n      const endLine = Number(row.end_line ?? 0);\n      return {\n        path,\n        startLine,\n        endLine,\n        score: 0.5, // LIKE has no relevance score — use a neutral midpoint\n        textScore: 0.5,\n        snippet: truncateSnippet(String(row.text ?? \"\")),\n        source: String(row.source) as \"memory\" | \"sessions\" | \"wiki\",\n        citation: `${path}:${startLine}-${endLine}`,\n        chunkId: Number(row.id),\n      } as MemorySearchHit & { chunkId: number };\n    });\n  }\n\n  private async vectorSearchById(\n    query: string,\n    limit: number,\n  ): Promise<Map<number, { vectorScore: number; snippet?: string }>> {\n    if (!this.vectorReady || this.embedding === undefined) return new Map();\n    // T4.1 — query-vector LRU cache. The embed call is the p99 hottest\n    // path (1.5-3s per hit). Cache by sha256(query) so repeated queries\n    // skip the HTTP round-trip entirely. The embedding cache (T4.4\n    // globalEmbeddingCache) catches text-level dedup; this catches the\n    // query-level search-result dedup on top.\n    const cacheKey = createHash(\"sha256\").update(query).digest(\"hex\");\n    const cached = queryVectorCache.get(cacheKey);\n    const queryVec = cached ?? (await this.embedding.embed([query]))[0];\n    if (queryVec === undefined) return new Map();\n    if (cached === undefined) queryVectorCache.set(cacheKey, queryVec);\n    const rows = vectorSearch(this.db, queryVec, limit);\n    // sqlite-vec distance: lower = closer. Normalize to 0..1 with higher = better.\n    const out = new Map<number, { vectorScore: number }>();\n    for (const row of rows) {\n      const score = 1 / (1 + Math.max(0, row.distance));\n      out.set(row.chunk_id, { vectorScore: score });\n    }\n    return out;\n  }\n\n  private combineHybridScores(\n    textHits: Array<MemorySearchHit & { chunkId: number }>,\n    vectorHitsById: Map<number, { vectorScore: number }>,\n    options: SearchOptions,\n  ): MemorySearchHit[] {\n    const weights = resolveWeights(options);\n    const merged = this.mergeHits(textHits, vectorHitsById);\n    const combined = [...merged.values()].map((hit) =>\n      blendScores(hit, vectorHitsById.get(hit.chunkId)?.vectorScore ?? 0, weights),\n    );\n    return combined.sort((a, b) => b.score - a.score);\n  }\n\n  private mergeHits(\n    textHits: Array<MemorySearchHit & { chunkId: number }>,\n    vectorHitsById: Map<number, { vectorScore: number }>,\n  ): Map<number, MemorySearchHit & { chunkId: number }> {\n    const merged = new Map<number, MemorySearchHit & { chunkId: number }>();\n    for (const hit of textHits) merged.set(hit.chunkId, hit);\n    const missingIds = [...vectorHitsById.keys()].filter((id) => !merged.has(id));\n    if (missingIds.length > 0) {\n      for (const hit of this.fetchChunksByIds(missingIds)) {\n        merged.set(hit.chunkId, { ...hit, score: 0, textScore: 0 });\n      }\n    }\n    return merged;\n  }\n\n  private fetchChunksByIds(\n    ids: ReadonlyArray<number>,\n  ): Array<MemorySearchHit & { chunkId: number }> {\n    const rows = this.repo.chunkRowsByIds(ids);\n    return rows.map((row) => {\n      const startLine = Number(row.start_line ?? 0);\n      const endLine = Number(row.end_line ?? 0);\n      const path = String(row.rel_path);\n      return {\n        chunkId: Number(row.id),\n        path,\n        startLine,\n        endLine,\n        score: 0,\n        textScore: 0,\n        snippet: truncateSnippet(String(row.text ?? \"\")),\n        source: String(row.source) as \"memory\" | \"sessions\" | \"wiki\",\n        citation: `${path}:${startLine}-${endLine}`,\n      };\n    });\n  }\n\n  close(): void {\n    this.repo.close();\n  }\n}\n\n// Replaced by `sanitizeFts5Query` from `internal/persistence/fts5-sanitize.ts`\n// (T5.2, ADR D64). The new sanitizer is the 6-step port of Hermes'\n// `_sanitize_fts5_query` and handles hyphens/dots/underscores correctly\n// without quoting every token.\n"]}

package/dist/{chunk-ZOFRNNZD.cjs → chunk-IZV72OEI.cjs}

@@ -1,9 +1,9 @@
 'use strict';
 
 var chunkRNXXYF22_cjs = require('./chunk-RNXXYF22.cjs');
-var crypto = require('crypto');
-var promises = require('fs/promises');
-var path = require('path');
+var node_crypto = require('node:crypto');
+var promises = require('node:fs/promises');
+var node_path = require('node:path');
 
 var NETWORK_FS_MAGIC = /* @__PURE__ */ new Map([
   [26985, "nfs"],
@@ -38,8 +38,8 @@ function atomicWriteTempTarget(name) {
   return TEMP_PATTERN.exec(name)?.[1];
 }
 async function replaceFileAtomic(filePath, content, options) {
-  await warnOnNetworkFsOnce(path.dirname(filePath), "atomic-write");
-  const suffix = crypto.randomBytes(8).toString("hex");
+  await warnOnNetworkFsOnce(node_path.dirname(filePath), "atomic-write");
+  const suffix = node_crypto.randomBytes(8).toString("hex");
   const tmp = atomicWriteTempPath(filePath, process.pid, suffix);
   const handle = await promises.open(tmp, options?.exclusive === true ? "wx" : "w", options?.mode ?? 384);
   try {
@@ -65,15 +65,15 @@ async function atomicWriteJson(filePath, data, options) {
   }
   const content = trailingNewline ? `${json}
 ` : json;
-  await promises.mkdir(path.dirname(filePath), { recursive: true });
+  await promises.mkdir(node_path.dirname(filePath), { recursive: true });
   await replaceFileAtomic(filePath, content, options);
 }
 async function atomicWriteText(filePath, content) {
-  await promises.mkdir(path.dirname(filePath), { recursive: true });
+  await promises.mkdir(node_path.dirname(filePath), { recursive: true });
   await replaceFileAtomic(filePath, content);
 }
 async function sweepStaleAtomicTemps(filePath) {
-  const dir = path.dirname(filePath);
+  const dir = node_path.dirname(filePath);
   const target = filePath.slice(dir.length + 1);
   let entries;
   try {
@@ -90,7 +90,7 @@ async function sweepStaleAtomicTemps(filePath) {
       continue;
     }
     try {
-      await promises.unlink(path.join(dir, name));
+      await promises.unlink(node_path.join(dir, name));
       removed += 1;
     } catch {
       skipped.push(name);
@@ -104,5 +104,5 @@ exports.atomicWriteTempTarget = atomicWriteTempTarget;
 exports.atomicWriteText = atomicWriteText;
 exports.replaceFileAtomic = replaceFileAtomic;
 exports.sweepStaleAtomicTemps = sweepStaleAtomicTemps;
-//# sourceMappingURL=chunk-ZOFRNNZD.cjs.map
-//# sourceMappingURL=chunk-ZOFRNNZD.cjs.map
+//# sourceMappingURL=chunk-IZV72OEI.cjs.map
+//# sourceMappingURL=chunk-IZV72OEI.cjs.map

package/dist/chunk-IZV72OEI.cjs.map

@@ -0,0 +1 @@
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The four entries\n// below cover the network/FUSE cases where `rename()` is best-effort\n// rather than strictly atomic; everything else is treated as local.\nconst NETWORK_FS_MAGIC: ReadonlyMap<number, string> = new Map([\n  [0x6969, \"nfs\"],\n  [0x517b, \"smb\"],\n  [0xff534d42, \"cifs\"],\n  [0x65735546, \"fuse\"],\n]);\n\n/**\n * T5.8 — Map a `statfs().type` magic number to a network-FS label, or\n * `null` for local filesystems. Pure function — exported via the\n * `__TESTING__` seam so unit tests can drive the parse logic without\n * needing a network mount.\n *\n * @internal\n */\nfunction detectNetworkFsName(typeMagic: number): string | null {\n  return NETWORK_FS_MAGIC.get(typeMagic) ?? null;\n}\n\nconst warnedNfsDirs = new Set<string>();\n\n/**\n * T5.8 — Best-effort one-shot stderr warning when `dirPath` lives on a\n * network/FUSE filesystem. Silent no-op on local filesystems, on\n * statfs failure (Windows / Node < 18.15 / EACCES), or after the\n * first warning per (dir + label) pair. Mirrors the `sqlite-wal.ts`\n * warn-once-per-label pattern (D63).\n *\n * @internal\n */\nasync function warnOnNetworkFsOnce(dirPath: string, label: string): Promise<void> {\n  const key = `${dirPath}\\0${label}`;\n  if (warnedNfsDirs.has(key)) return;\n  warnedNfsDirs.add(key);\n  try {\n    const info = await statfs(dirPath);\n    const fsName = detectNetworkFsName(info.type);\n    if (fsName === null) return;\n    diag(\n      `[theokit-sdk] ${label}: detected network fs (${fsName}) at ${dirPath} — ` +\n        \"rename() atomicity guarantees may be weaker than expected.\\n\",\n    );\n  } catch {\n    // statfs unavailable (Windows / Node < 18.15) or unreadable —\n    // silent fallback. The warning is purely informational.\n  }\n}\n\n/**\n * T5.8 — Test seam exposing the pure detection function so unit tests\n * can assert magic-number coverage without spinning up a network FS.\n * NOT included in the public barrel.\n *\n * @internal\n */\nexport function __TESTING__detectNetworkFsName(typeMagic: number): string | null {\n  return detectNetworkFsName(typeMagic);\n}\n\n/**\n * T5.8 — Test seam: clear the per-directory warn-once registry between\n * tests so warning-emission tests stay deterministic.\n *\n * @internal\n */\nexport function __TESTING__resetNfsWarnings(): void {\n  warnedNfsDirs.clear();\n}\n\n/**\n * M107 — temp-file creation control, shared by `replaceFileAtomic`,\n * `atomicWriteJson` and `atomicWriteText`.\n *\n * Both fields are OPTIONAL and the default is byte-identical to the behavior\n * before M107. See `replaceFileAtomic` for why the mode reassertion\n * is conditional.\n *\n */\nexport interface AtomicWriteFileOptions {\n  /**\n   * Permission bits of the created file. Default: `0o600`, the previous fixed\n   * literal — filtered by the `umask`, as it always was. When provided, the mode is\n   * reasserted on the descriptor, so the `umask` cannot silently\n   * clearing bits the caller asked for.\n   */\n  mode?: number;\n  /**\n   * Create the temp file with `wx` (exclusive creation) instead of `w`. Default:\n   * `false` — the previous flag. With `true`, a pre-existing temp file becomes\n   * `EEXIST` instead of being truncated.\n   */\n  exclusive?: boolean;\n}\n\n/** The one place the temp-path format is written. `atomicWriteTempTarget` reverses it. */\nfunction atomicWriteTempPath(filePath: string, pid: number, suffix: string): string {\n  return `${filePath}.${String(pid)}.${suffix}.tmp`;\n}\n\n/** Reverses {@link atomicWriteTempPath}: `<file>.<pid>.<hex>.tmp` → `<file>`. */\nconst TEMP_PATTERN = /^(.+)\\.\\d+\\.[0-9a-f]{16}\\.tmp$/;\n\n/**\n * U-9 — the file a leftover temp was replacing, or `undefined` if this is not one of ours.\n *\n * A crash between the open and the rename leaves `<file>.<pid>.<hex>.tmp` behind, and nothing here\n * collects it: this module creates temps and has no opinion about sweeping them. A consumer that\n * wants to has to know the format — which lived only in the implementation, so one copied it out of\n * a compiled chunk as a regex. That copy would have gone on reporting \"nothing to collect\" the day\n * the format changed, which is the quietest possible way for a cleanup to stop working.\n *\n * Deliberately strict: the pid must be digits and the suffix exactly 16 hex characters. Matching any\n * `.tmp` would claim editors' swap files and other tools' scratch, on a path whose purpose is\n * deleting them.\n */\nexport function atomicWriteTempTarget(name: string): string | undefined {\n  return TEMP_PATTERN.exec(name)?.[1];\n}\n\n/**\n * Atomic file replacement: write content to a per-call unique tmp path,\n * fsync, then rename over the target. Crash mid-write leaves either the old\n * file intact or the new file complete — never a half-written file.\n *\n * The tmp suffix is `<pid>.<rand>.tmp` so parallel processes (and concurrent\n * burst writes within one process) never collide on the same tmp path — a\n * race that would manifest as `ENOENT` on `rename` after the rival process\n * already moved its tmp into place.\n *\n * Mirrors peer-project's `replaceFileAtomic` from\n * `reference/peer-project/packages/memory-host-sdk/src/host/fs-utils.ts` with\n * the multi-writer robustness fix.\n *\n * ## M107 — `options` is optional, and the default is byte-identical\n *\n * The third parameter is additive: every earlier caller still compiles and\n * writing exactly the same bytes, with the same mode, to the same path.\n *\n * The mode reassertion (`handle.chmod`) is **conditional on `mode !== undefined`**,\n * and that is not cosmetic. `open`'s mode argument is filtered by the `umask`,\n * which only CLEARS bits — measured in this codebase before the change:\n *\n * ```\n * umask 0o002  ->  0o600      umask 0o022  ->  0o600      umask 0o200  ->  0o400\n * ```\n *\n * An unconditional `chmod` would take the third case from `0o400` to `0o600` — a\n * an on-disk change for every caller that asked for nothing, including external\n * consumers. When the caller DOES ask for a mode, however, letting the `umask` decide\n * silently is the defect this parameter exists to close; hence the reassertion.\n *\n * It goes on the DESCRIPTOR, before the `rename`, never after: chmod-ing the final\n * final one would leave a window where it carries the `umask`'s mode — a known anti-pattern.\n * The chosen shape passes the mode as an `open` argument.\n *\n */\nexport async function replaceFileAtomic(\n  filePath: string,\n  content: string,\n  options?: AtomicWriteFileOptions,\n): Promise<void> {\n  // T5.8 — warn once per parent directory if it lives on a network /\n  // FUSE filesystem where `rename()` atomicity is best-effort. The\n  // write proceeds unchanged; the warning is purely informational so\n  // operators can spot the case in stderr / log aggregators.\n  await warnOnNetworkFsOnce(dirname(filePath), \"atomic-write\");\n  // T5.7 — crypto-random tmp suffix (CSPRNG, 64 bits of entropy)\n  // replaces the predictable `Math.random().toString(36)` source. An\n  // attacker observing the process can no longer predict the next\n  // tmp path and pre-stage a hostile file to be renamed into place.\n  const suffix = randomBytes(8).toString(\"hex\");\n  const tmp = atomicWriteTempPath(filePath, process.pid, suffix);\n  // T5.7 — mode 0o600 on the tmp file (owner read+write only). The\n  // tmp file holds the FULL in-flight content (credential snapshots,\n  // OAuth tokens) before the rename. World-readable default would\n  // expose secrets during the ms-window between open and rename\n  // (TOCTOU). On modern Linux the post-rename target inherits the\n  // tmp's permission bits, so the final file is also 0o600.\n  const handle = await open(tmp, options?.exclusive === true ? \"wx\" : \"w\", options?.mode ?? 0o600);\n  try {\n    try {\n      await handle.writeFile(content, \"utf8\");\n      await handle.sync();\n      // Conditional by measurement, not by taste — see this function's docblock.\n      if (options?.mode !== undefined) await handle.chmod(options.mode);\n    } finally {\n      await handle.close();\n    }\n    await rename(tmp, filePath);\n  } catch (cause) {\n    // EVERY failure after the open removes the temp, not only a rename failure.\n    //\n    // Cleanup used to sit on the rename alone, so a write error, a full disk or an fsync failure\n    // closed the handle in a `finally` and propagated with the temp still on disk. That is not the\n    // unfixable case — a process killed mid-write cannot clean up after itself — it is the ordinary\n    // error path, and it leaked by construction.\n    //\n    // Found by this package's own suite pollution gate, which reported a stray\n    // `.theokit/agents/registry.json.<pid>.<hex>.tmp` on two separate full runs and not on the ones\n    // between. `sweepStaleAtomicTemps` reaps what a crash leaves; this stops the failures that are\n    // reachable from inside the process from contributing.\n    await unlink(tmp).catch(() => undefined);\n    throw cause;\n  }\n}\n\n/**\n * Options for `atomicWriteJson`.\n *\n */\nexport interface AtomicWriteJsonOptions extends AtomicWriteFileOptions {\n  /** Indent passed to `JSON.stringify`. Default: 2. */\n  indent?: number;\n  /** Whether to append a trailing newline (POSIX convention). Default: true. */\n  trailingNewline?: boolean;\n}\n\n/**\n * Typed JSON atomic write helper.\n *\n * Serializes `data` to JSON, then delegates to `replaceFileAtomic`. The\n * parent directory is auto-created (recursive `mkdir`) to make this helper\n * safe for callers who haven't ensured the directory exists (EC-4 in the\n * persistence-state-hardening plan).\n *\n * Throws `TypeError` on circular refs or `undefined` data (propagates from\n * `JSON.stringify`).\n *\n */\nexport async function atomicWriteJson<T>(\n  filePath: string,\n  data: T,\n  options?: AtomicWriteJsonOptions,\n): Promise<void> {\n  const indent = options?.indent ?? 2;\n  const trailingNewline = options?.trailingNewline ?? true;\n  const json = JSON.stringify(data, null, indent);\n  if (json === undefined) {\n    throw new TypeError(\"atomicWriteJson: cannot serialize undefined\");\n  }\n  const content = trailingNewline ? `${json}\\n` : json;\n  await mkdir(dirname(filePath), { recursive: true });\n  await replaceFileAtomic(filePath, content, options);\n}\n\n/**\n * Atomic text write. Same crash-safety guarantees as `replaceFileAtomic` +\n * auto-mkdir of the parent directory. Written for `theokit-migrate-config` (T4.1, EC-2 MUST FIX) so\n * a crash mid-migration left previous MD files intact rather than corrupting them; that CLI is no\n * longer published, and the guarantee is the reason every other caller uses this too.\n *\n */\nexport async function atomicWriteText(filePath: string, content: string): Promise<void> {\n  await mkdir(dirname(filePath), { recursive: true });\n  await replaceFileAtomic(filePath, content);\n}\n\n/**\n * Delete leftover atomic-write temps beside `filePath`, and report what it could not claim.\n *\n * A crash — or a test runner killing a worker — between the `open` and the `rename` leaves\n * `<file>.<pid>.<hex>.tmp` behind. Nothing collected them: `atomicWriteTempTarget` was exported for\n * a caller that never existed, and `packages/sdk/.theokit/agents/` had accumulated **1,984** of them\n * between 2026-05-16 and 2026-09-01.\n *\n * IT RETURNS WHAT IT SKIPPED, and that is the part worth having. Of those 1,984 files only 1,522\n * matched the current `<pid>.<16-hex>.tmp` shape; the other 462 carried an older suffix from before\n * the format changed. A sweeper that only knows today's format leaves 23% behind and reports\n * success — an under-collecting cleanup is worse than an absent one, because the absence is at\n * least visible on disk. Callers that care can log `skipped`; callers that do not still get the\n * honest count rather than a silent one.\n *\n * Best-effort by construction: a directory that cannot be read, or a file that vanishes between the\n * listing and the unlink, is not an error. Sweeping is housekeeping, and housekeeping must never\n * fail the operation it was attached to.\n *\n * @internal\n */\nexport async function sweepStaleAtomicTemps(\n  filePath: string,\n): Promise<{ removed: number; skipped: string[] }> {\n  const dir = dirname(filePath);\n  const target = filePath.slice(dir.length + 1);\n  let entries: string[];\n  try {\n    entries = await readdir(dir);\n  } catch {\n    return { removed: 0, skipped: [] };\n  }\n  let removed = 0;\n  const skipped: string[] = [];\n  for (const name of entries) {\n    if (!name.startsWith(`${target}.`) || !name.endsWith(\".tmp\")) continue;\n    if (atomicWriteTempTarget(name) !== target) {\n      // Ours by prefix, but not in the shape this module writes today — an older format, or\n      // something else entirely. Named rather than deleted: this function must not become a\n      // wildcard `.tmp` remover on a path it shares with other tools.\n      skipped.push(name);\n      continue;\n    }\n    try {\n      await unlink(join(dir, name));\n      removed += 1;\n    } catch {\n      skipped.push(name);\n    }\n  }\n  return { removed, skipped };\n}\n"]}

package/dist/{chunk-KU5O7WPK.js → chunk-JD3EKKKB.js}

@@ -1,6 +1,6 @@
 import { TheokitAgentError } from './chunk-TNFOU6SB.js';
-import { readFileSync, mkdirSync, openSync, writeSync, closeSync, fstatSync, readSync } from 'fs';
-import { dirname } from 'path';
+import { readFileSync, mkdirSync, openSync, writeSync, closeSync, fstatSync, readSync } from 'node:fs';
+import { dirname } from 'node:path';
 
 var JsonlParseError = class extends TheokitAgentError {
   constructor(message, line) {
@@ -99,5 +99,5 @@ function readJsonlIds(path, keyFn) {
 }
 
 export { JsonlParseError, appendJsonl, loadJsonl, readJsonlIds };
-//# sourceMappingURL=chunk-KU5O7WPK.js.map
-//# sourceMappingURL=chunk-KU5O7WPK.js.map
+//# sourceMappingURL=chunk-JD3EKKKB.js.map
+//# sourceMappingURL=chunk-JD3EKKKB.js.map

package/dist/{chunk-KU5O7WPK.js.map → chunk-JD3EKKKB.js.map}

@@ -1 +1 @@
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The dataset SCHEMA is the caller's\n *   concern via `map` (M6 ADR D3) — this module owns only the parse.\n * - `appendJsonl` / `readJsonlIds` — crash-durable, resumable batch persistence\n *   (M6 ADR D1): each record is appended as one whole `\\n`-terminated line the\n *   instant it is produced, and a re-run resumes by skipping already-keyed rows.\n *\n * reference: knowledge-base/references/theocode-eval/lib/swebench-dataset.ts:82\n * (parseJsonl + line-N error) and swebench-batch.ts:113,205 (resume + per-line\n * flush).\n *\n * @internal\n */\nimport {\n  closeSync,\n  fstatSync,\n  mkdirSync,\n  openSync,\n  readFileSync,\n  readSync,\n  writeSync,\n} from \"node:fs\";\nimport { dirname } from \"node:path\";\nimport { TheokitAgentError } from \"../../errors.js\";\n\n/** Raised when a JSONL line is not valid JSON or is not a JSON object. 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The same class had already been caught in the consumer (`atomic-sync.ts`, M88\n  // HIGH-1).\n  //\n  // `mode` only applies on CREATION; a pre-existing file keeps whatever permission it already has.\n  const fd = openSync(path, \"a\", 0o600);\n  try {\n    writeSync(fd, `${prefix}${JSON.stringify(record)}\\n`);\n  } finally {\n    closeSync(fd);\n  }\n}\n\n/**\n * Does the file end without a `\\n`? Then the last line is truncated — a crash mid-append.\n *\n * Without this check the next append **glues** itself onto the middle of the broken line, producing\n * an invalid line the reader discards: the NEW record disappears along with the partial one. The\n * previous path (read-modify-write) self-healed from this because it rewrote the whole file.\n * Measured in M93's adversarial review (H2): after an append over a truncated file, the\n * just-written record was no longer readable.\n *\n * Reads **one byte**, not the file.\n */\nfunction needsLineBreakBefore(path: string): boolean {\n  let fd: number;\n  try {\n    fd = openSync(path, \"r\");\n  } catch {\n    return false; // the file does not exist yet: nothing to splice onto\n  }\n  try {\n    const size = fstatSync(fd).size;\n    if (size === 0) return false;\n    const buf = Buffer.alloc(1);\n    readSync(fd, buf, 0, 1, size - 1);\n    return buf[0] !== 0x0a;\n  } finally {\n    closeSync(fd);\n  }\n}\n\n/**\n * Read the set of keys from an existing JSONL file for which `keyFn(parsed)`\n * returns a non-empty string. Used to resume a crashed batch by skipping rows\n * already persisted with a successful result. A trailing partial line from an\n * interrupted append is tolerated (skipped, not thrown), and a missing file\n * yields an empty set.\n *\n * reference: swebench-batch.ts:113 (readDoneIds), :129 (success-only),\n * :131 (tolerate partial line).\n */\nexport function readJsonlIds(\n  path: string,\n  keyFn: (parsed: Record<string, unknown>) => string | undefined,\n): Set<string> {\n  const done = new Set<string>();\n  let text: string;\n  try {\n    text = readFileSync(path, \"utf8\");\n  } catch {\n    return done; // no file yet → nothing done\n  }\n  for (const rawLine of text.split(\"\\n\")) {\n    // A trailing partial line from an interrupted run parses to undefined → skipped.\n    const parsed = tryParseObjectLine(rawLine.trim());\n    if (parsed === undefined) continue;\n    const key = keyFn(parsed);\n    if (typeof key === \"string\" && key.length > 0) done.add(key);\n  }\n  return done;\n}\n"]}
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A malformed or\n * non-object line throws {@link JsonlParseError} naming the 1-based line. When\n * `map` is provided, each raw object is mapped to the typed row (the SWE-bench\n * schema lives in the caller's `map`, per M6 ADR D3).\n */\nexport function loadJsonl<T = Record<string, unknown>>(\n  path: string,\n  opts: {\n    map?: (raw: Record<string, unknown>, lineNumber: number) => T;\n    /**\n     * M81 — tolerate a truncated LAST line (a crash artifact: the process died mid-write).\n     *\n     * Opt-in on purpose. As a default it would also swallow corruption in the MIDDLE of the file,\n     * turning loud data loss into silent data loss — the wrong trade for a session store.\n     */\n    tolerateTrailingPartialLine?: boolean;\n  } = {},\n): T[] {\n  const lines = readFileSync(path, \"utf8\").split(\"\\n\");\n  const out: T[] = [];\n  for (let i = 0; i < lines.length; i += 1) {\n    const lineNumber = i + 1;\n    const line = (lines[i] ?? \"\").trim();\n    if (line.length === 0) continue;\n    // M81 — `undefined` = a tolerated invalid line (the last one, truncated by a crash). Any other\n    // invalid line has already thrown inside `parseLine`.\n    const parsed = parseLine(\n      line,\n      lineNumber,\n      opts.tolerateTrailingPartialLine === true && lineNumber === lines.length,\n    );\n    if (parsed === undefined) break;\n    out.push(opts.map ? opts.map(parsed, lineNumber) : (parsed as unknown as T));\n  }\n  return out;\n}\n\n/**\n * Parses ONE line, returning `undefined` when it is a tolerated truncated last line.\n *\n * Extracted because `loadJsonl` went over the cognitive-complexity ceiling once it gained the\n * tolerance — and because parsing a line and iterating a file are two responsibilities that were\n * only together out of habit.\n */\nfunction parseLine(\n  line: string,\n  lineNumber: number,\n  tolerate: boolean,\n): Record<string, unknown> | undefined {\n  let parsed: unknown;\n  try {\n    parsed = JSON.parse(line);\n  } catch {\n    if (tolerate) return undefined;\n    throw new JsonlParseError(`line ${lineNumber}: invalid JSON`, lineNumber);\n  }\n  if (!isPlainObject(parsed)) {\n    throw new JsonlParseError(`line ${lineNumber}: not a JSON object`, lineNumber);\n  }\n  return parsed;\n}\n\n/**\n * Append one record as a whole `\\n`-terminated JSON line. Creates the parent dir\n * if missing. `appendFileSync` is synchronous, so within a single Node process\n * the event loop serializes writes and each call writes its line atomically —\n * interleave-safe for the bounded-concurrency batch runner.\n *\n * reference: swebench-batch.ts:192 (mkdir-before-append), :205 (per-line flush).\n */\nexport function appendJsonl(path: string, record: unknown): void {\n  // T2.4 — `0o700` for the same reason the file below is `0o600`, and it is the half M93 missed. A\n  // private file inside a group-writable directory can be replaced wholesale, and the replacement's\n  // mode is whatever the writer chose. Under `umask 002` this directory was born `0775`.\n  //\n  // The directory sits under `~/.theokit`, shared with the credential and trust stores, and the\n  // framework already wrote the diagnosis while fixing a sibling (`@theokit/agents\n  // config/trust-store.ts:157-161`): the mode argument is a no-op on a directory that already\n  // exists, \"and this one is shared with the SDK's transcript root — whoever creates it first sets\n  // the permissions\". Whoever creates it first is usually THIS function, because a session writes a\n  // transcript before it ever touches a credential. So `assertSecureModes` was not wrong to demand a\n  // private directory; this path was wrong to produce one that fails it, depending on run order.\n  //\n  // Creation-time only, deliberately: repairing a pre-existing directory means `stat` + `chmod` on\n  // every append, and this is the hot path of every session. The pre-existing case is what\n  // `assertSecureModes` is for.\n  mkdirSync(dirname(path), { recursive: true, mode: 0o700 });\n  const prefix = needsLineBreakBefore(path) ? \"\\n\" : \"\";\n  // M93 (adversarial review, H1) — `0o600`. `appendFileSync` takes no `mode`, so the permission came\n  // from the umask: under `umask 022` the transcript was born `0664`, world-readable. The previous\n  // path (`replaceFileAtomic`) pinned `0o600` on purpose — \"holds the FULL in-flight content\n  // (credential snapshots, OAuth tokens)\" (`atomic-write.ts:107`) — and switching to append lost\n  // that silently. The same class had already been caught in the consumer (`atomic-sync.ts`, M88\n  // HIGH-1).\n  //\n  // `mode` only applies on CREATION; a pre-existing file keeps whatever permission it already has.\n  const fd = openSync(path, \"a\", 0o600);\n  try {\n    writeSync(fd, `${prefix}${JSON.stringify(record)}\\n`);\n  } finally {\n    closeSync(fd);\n  }\n}\n\n/**\n * Does the file end without a `\\n`? Then the last line is truncated — a crash mid-append.\n *\n * Without this check the next append **glues** itself onto the middle of the broken line, producing\n * an invalid line the reader discards: the NEW record disappears along with the partial one. The\n * previous path (read-modify-write) self-healed from this because it rewrote the whole file.\n * Measured in M93's adversarial review (H2): after an append over a truncated file, the\n * just-written record was no longer readable.\n *\n * Reads **one byte**, not the file.\n */\nfunction needsLineBreakBefore(path: string): boolean {\n  let fd: number;\n  try {\n    fd = openSync(path, \"r\");\n  } catch {\n    return false; // the file does not exist yet: nothing to splice onto\n  }\n  try {\n    const size = fstatSync(fd).size;\n    if (size === 0) return false;\n    const buf = Buffer.alloc(1);\n    readSync(fd, buf, 0, 1, size - 1);\n    return buf[0] !== 0x0a;\n  } finally {\n    closeSync(fd);\n  }\n}\n\n/**\n * Read the set of keys from an existing JSONL file for which `keyFn(parsed)`\n * returns a non-empty string. Used to resume a crashed batch by skipping rows\n * already persisted with a successful result. A trailing partial line from an\n * interrupted append is tolerated (skipped, not thrown), and a missing file\n * yields an empty set.\n *\n * reference: swebench-batch.ts:113 (readDoneIds), :129 (success-only),\n * :131 (tolerate partial line).\n */\nexport function readJsonlIds(\n  path: string,\n  keyFn: (parsed: Record<string, unknown>) => string | undefined,\n): Set<string> {\n  const done = new Set<string>();\n  let text: string;\n  try {\n    text = readFileSync(path, \"utf8\");\n  } catch {\n    return done; // no file yet → nothing done\n  }\n  for (const rawLine of text.split(\"\\n\")) {\n    // A trailing partial line from an interrupted run parses to undefined → skipped.\n    const parsed = tryParseObjectLine(rawLine.trim());\n    if (parsed === undefined) continue;\n    const key = keyFn(parsed);\n    if (typeof key === \"string\" && key.length > 0) done.add(key);\n  }\n  return done;\n}\n"]}

package/dist/{chunk-DFBWYETS.js → chunk-JRP2W2DR.js}

@@ -1,6 +1,6 @@
 import { toJsonSchema } from './chunk-7I5Z3UBJ.js';
 import { ConfigurationError } from './chunk-TNFOU6SB.js';
-import { createRequire } from 'module';
+import { createRequire } from 'node:module';
 
 var cachedZ;
 function requireZod() {
@@ -77,5 +77,5 @@ var STRUCTURED_OUTPUT_MESSAGES = {
 };
 
 export { STRUCTURED_OUTPUT_MESSAGES, buildToolPrompt, buildTransientAgentOptions, disposeAndDeleteTransient, extractUsage, makeOutputTool, setupStructuredOutput };
-//# sourceMappingURL=chunk-DFBWYETS.js.map
-//# sourceMappingURL=chunk-DFBWYETS.js.map
+//# sourceMappingURL=chunk-JRP2W2DR.js.map
+//# sourceMappingURL=chunk-JRP2W2DR.js.map

package/dist/{chunk-DFBWYETS.js.map → chunk-JRP2W2DR.js.map}

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Both build a transient agent with a\n * single synthetic `output` tool whose handler captures the model's\n * structured response.\n *\n * Extracted from inline duplicates to keep jscpd quiet AND to keep the\n * two public APIs in lockstep.\n *\n * @internal\n */\n\nlet cachedZ: typeof ZodNamespace | undefined;\n\n/**\n * Load Zod via createRequire (it's an optional peer dep). Throws a typed\n * ConfigurationError if Zod isn't installed.\n */\nexport function requireZod(): typeof ZodNamespace {\n  if (cachedZ !== undefined) return cachedZ;\n  const r = createRequire(import.meta.url);\n  let mod: { z?: typeof ZodNamespace } & typeof ZodNamespace;\n  try {\n    mod = r(\"zod\") as typeof mod;\n  } catch (cause) {\n    throw new ConfigurationError(\n      \"Structured output requires the optional peer dependency `zod`. \" +\n        'Add `\"zod\": \"^3.25.0 || ^4.0.0\"` to your package.json and reinstall.',\n      { code: \"zod_not_installed\", cause },\n    );\n  }\n  cachedZ = (mod.z ?? mod) as typeof ZodNamespace;\n  return cachedZ;\n}\n\n/**\n * Build the synthetic `output` tool used by both `generateObject` and\n * `streamObject`. The handler captures the raw input on first call only\n * (EC-D10 / EC-6: parallel tool use in Claude 3.5+ may invoke `output`\n * twice; later calls are ignored).\n */\nexport function makeOutputTool(\n  jsonSchema: Record<string, unknown>,\n  onCapture: (input: unknown) => string | Promise<string> | undefined,\n): CustomTool {\n  return {\n    name: \"output\",\n    description: \"Call this tool with your final structured answer. Match the JSON schema exactly.\",\n    inputSchema: jsonSchema,\n    handler: (input) => {\n      const out = onCapture(input);\n      // Some callers throw a sentinel (generate-object) and never return.\n      // Others return a string (stream-object). Anything else → empty string.\n      if (typeof out === \"string\") return out;\n      if (out instanceof Promise) return out;\n      return \"\";\n    },\n  };\n}\n\n/**\n * Assemble the AgentOptions for the transient agent. Shared shape:\n * model + local + tools[output] + systemPrompt + apiKey, plus the caller's withheld builtins\n * and memory settings when supplied (B-678).\n */\nexport function buildTransientAgentOptions(params: {\n  // SE8 — accepts the bare-string shorthand; forwarded to AgentOptions.model\n  // (normalized at Agent.create).\n  model: string | ModelSelection;\n  local: LocalOptions;\n  outputTool: CustomTool;\n  systemPrompt?: string;\n  apiKey?: string;\n  providers?: ProviderRoutingSettings;\n  withheldBuiltinTools?: readonly BuiltinToolName[];\n  memory?: MemorySettings;\n}): AgentOptions {\n  return {\n    model: params.model,\n    local: params.local,\n    tools: [params.outputTool],\n    systemPrompt:\n      params.systemPrompt ??\n      \"You produce structured output by calling the `output` tool exactly once. Match the JSON schema.\",\n    ...(params.apiKey !== undefined ? { apiKey: params.apiKey } : {}),\n    ...(params.providers !== undefined ? { providers: params.providers } : {}),\n    ...(params.withheldBuiltinTools !== undefined\n      ? { withheldBuiltinTools: params.withheldBuiltinTools }\n      : {}),\n    ...(params.memory !== undefined ? { memory: params.memory } : {}),\n  };\n}\n\n/**\n * Best-effort extraction of token usage from a run result. Local runtimes\n * may not expose it; default to zeros.\n */\nexport function extractUsage(result: unknown): { inputTokens: number; outputTokens: number } {\n  const u = (result as { usage?: { inputTokens?: number; outputTokens?: number } }).usage;\n  if (u === undefined) return { inputTokens: 0, outputTokens: 0 };\n  return { inputTokens: u.inputTokens ?? 0, outputTokens: u.outputTokens ?? 0 };\n}\n\n/**\n * Build the user-message prompt that instructs the model to call the\n * `output` tool with a schema-matched structured answer.\n */\nexport function buildToolPrompt(prompt: string): string {\n  return `${prompt}\\n\\nRespond by calling the \\`output\\` tool with the structured answer that matches the schema.`;\n}\n\n/**\n * One-shot setup shared by both `generateObject` and `streamObject`. Loads\n * Zod, computes the JSON schema, primes the captured-raw / usage / retry\n * state. Returns the values needed by the caller's loop.\n */\nexport function setupStructuredOutput<T extends ZodType>(\n  schema: T,\n  maxRetries: number | undefined,\n) {\n  const z = requireZod();\n  // Universal Zod 3+4 conversion (feature-detects native v4, falls back to lib on v3).\n  const jsonSchema = toJsonSchema(schema, { unrepresentable: \"any\" });\n  return {\n    z,\n    jsonSchema,\n    maxRetries: maxRetries ?? 1,\n    initialUsage: { inputTokens: 0, outputTokens: 0 },\n  };\n}\n\n/**\n * Cleanup the transient agent after generateObject/streamObject finish.\n * Disposes AND hard-deletes from the registry so the count stays stable.\n *\n * @internal\n */\nexport async function disposeAndDeleteTransient(\n  agent: { dispose: () => Promise<void>; agentId: string },\n  deletor: (agentId: string) => Promise<void>,\n): Promise<void> {\n  await agent.dispose();\n  try {\n    await deletor(agent.agentId);\n  } catch {\n    // Best-effort cleanup.\n  }\n}\n\n/**\n * The three failure messages, verbatim from what both entry points already emit.\n *\n * Identical strings in two files is how two APIs start describing the same failure differently: the\n * first person to improve one of them improves half the product.\n *\n * @internal\n */\nexport const STRUCTURED_OUTPUT_MESSAGES = {\n  runFailed: (message: string | undefined, code: string | undefined): string =>\n    `Agent run failed before the model could reply: ${message ?? \"unknown error\"} [${code ?? \"?\"}]`,\n  noToolCall: \"The model returned text instead of calling the `output` tool.\",\n  parseFailed: \"Schema parse failed after all retries.\",\n} as const;\n"]}