@theihtisham/agent-shadow-brain 7.2.0 → 7.22.0

package/dist/brain/memory-annotations.js

@@ -0,0 +1,402 @@
+import * as fs from 'node:fs';
+import * as os from 'node:os';
+import * as path from 'node:path';
+import { randomUUID } from 'node:crypto';
+import { setTimeout as delay } from 'node:timers/promises';
+import { matchesFileIdentity } from './file-identity.js';
+export const MEMORY_ANNOTATIONS_FILENAME = 'memory-annotations.json';
+export const MEMORY_ANNOTATION_LIMITS = Object.freeze({
+    reviews: 5000, links: 5000, history: 500, note: 1000, bytes: 16 * 1024 * 1024,
+});
+export const MEMORY_REVIEW_STATES = ['active', 'archived', 'contested'];
+export const MEMORY_RELATION_TYPES = ['related', 'supports', 'contradicts', 'supersedes'];
+export class MemoryAnnotationsError extends Error {
+    constructor(code, message) {
+        super(message);
+        this.code = code;
+        this.name = 'MemoryAnnotationsError';
+    }
+}
+const LOCK_TIMEOUT = 3000;
+const LOCK_POLL = 20;
+const MAX_IDENTIFIER = 256;
+const FORBIDDEN_IDS = new Set(['__proto__', 'constructor', 'prototype']);
+function errno(error) {
+    return error?.code;
+}
+function record(value) {
+    if (value === null || typeof value !== 'object')
+        return false;
+    const prototype = Object.getPrototypeOf(value);
+    return prototype === Object.prototype || prototype === null;
+}
+function identifier(value) {
+    return typeof value === 'string' && value.length > 0 && value.length <= MAX_IDENTIFIER &&
+        value === value.trim() && !/[\u0000-\u001f\u007f]/.test(value) && !FORBIDDEN_IDS.has(value);
+}
+function note(value) {
+    return typeof value === 'string' && value.length <= MEMORY_ANNOTATION_LIMITS.note;
+}
+function instant(value) {
+    if (typeof value !== 'string')
+        return false;
+    const time = Date.parse(value);
+    return Number.isFinite(time) && new Date(time).toISOString() === value;
+}
+function reviewState(value) {
+    return MEMORY_REVIEW_STATES.some(state => state === value);
+}
+function relationType(value) {
+    return MEMORY_RELATION_TYPES.some(type => type === value);
+}
+function keysOnly(input, allowed) {
+    return Object.keys(input).every(key => allowed.includes(key));
+}
+function parseCommand(value) {
+    if (!record(value))
+        return undefined;
+    const raw = { ...value };
+    if (raw.kind === 'unlink' && identifier(raw.linkId) && keysOnly(raw, ['kind', 'linkId'])) {
+        return { kind: 'unlink', linkId: raw.linkId };
+    }
+    if (!identifier(raw.projectId) || (raw.note !== undefined && !note(raw.note)))
+        return undefined;
+    const reviewNote = typeof raw.note === 'string' ? raw.note.trim() : '';
+    if (raw.kind === 'review' && identifier(raw.memoryId) && reviewState(raw.state) &&
+        keysOnly(raw, ['kind', 'projectId', 'memoryId', 'state', 'note'])) {
+        return { kind: 'review', projectId: raw.projectId, memoryId: raw.memoryId, state: raw.state, note: reviewNote };
+    }
+    if (raw.kind === 'link' && identifier(raw.fromId) && identifier(raw.toId) && relationType(raw.type) &&
+        raw.fromId !== raw.toId && keysOnly(raw, ['kind', 'projectId', 'fromId', 'toId', 'type', 'note'])) {
+        return {
+            kind: 'link', projectId: raw.projectId, fromId: raw.fromId, toId: raw.toId,
+            type: raw.type, note: reviewNote,
+        };
+    }
+    return undefined;
+}
+function key(projectId, id) {
+    return JSON.stringify([projectId, id]);
+}
+function relationKey(link) {
+    const symmetric = link.type === 'related' || link.type === 'contradicts';
+    const endpoints = symmetric ? [link.fromId, link.toId].sort() : [link.fromId, link.toId];
+    return JSON.stringify([link.projectId, link.type, ...endpoints]);
+}
+function graphProblem(links) {
+    const ids = new Set();
+    const relationKeys = new Set();
+    const replacementOf = new Map();
+    for (const link of links) {
+        const relation = relationKey(link);
+        if (ids.has(link.id) || relationKeys.has(relation))
+            return 'This memory relation already exists.';
+        ids.add(link.id);
+        relationKeys.add(relation);
+        if (link.type !== 'supersedes')
+            continue;
+        const target = key(link.projectId, link.toId);
+        if (replacementOf.has(target))
+            return 'This memory already has a replacement. Remove that relation first.';
+        replacementOf.set(target, key(link.projectId, link.fromId));
+    }
+    const complete = new Set();
+    for (const start of replacementOf.keys()) {
+        const seen = new Set();
+        for (let current = start; current !== undefined && !complete.has(current); current = replacementOf.get(current)) {
+            if (seen.has(current))
+                return 'A supersession chain cannot contain a cycle.';
+            seen.add(current);
+        }
+        for (const id of seen)
+            complete.add(id);
+    }
+    return undefined;
+}
+function validReview(value) {
+    return record(value) && keysOnly(value, ['projectId', 'state', 'note', 'updatedAt']) &&
+        identifier(value.projectId) && reviewState(value.state) && note(value.note) && instant(value.updatedAt);
+}
+function validLink(value) {
+    return record(value) && keysOnly(value, ['id', 'projectId', 'fromId', 'toId', 'type', 'note', 'createdAt']) &&
+        identifier(value.id) && identifier(value.projectId) &&
+        identifier(value.fromId) && identifier(value.toId) && value.fromId !== value.toId &&
+        relationType(value.type) && note(value.note) && instant(value.createdAt);
+}
+function validHistory(history, revision) {
+    if (!Array.isArray(history) || history.length !== Math.min(revision, MEMORY_ANNOTATION_LIMITS.history))
+        return false;
+    const first = revision - history.length + 1;
+    return history.every((event, index) => {
+        if (!record(event) || !keysOnly(event, ['revision', 'at', 'projectId', 'command', 'relationId', 'relation', 'previousReview']) ||
+            event.revision !== first + index || !instant(event.at) || !identifier(event.projectId))
+            return false;
+        const command = parseCommand(event.command);
+        if (!command)
+            return false;
+        if (command.kind === 'review') {
+            return command.projectId === event.projectId && event.relationId === undefined && event.relation === undefined &&
+                (event.previousReview === undefined || (validReview(event.previousReview) && event.previousReview.projectId === event.projectId));
+        }
+        if (event.previousReview !== undefined || !validLink(event.relation) ||
+            event.relation.id !== event.relationId || event.relation.projectId !== event.projectId)
+            return false;
+        if (command.kind === 'unlink')
+            return event.relationId === command.linkId;
+        return command.projectId === event.projectId && command.type === event.relation.type &&
+            command.fromId === event.relation.fromId && command.toId === event.relation.toId;
+    });
+}
+function emptySnapshot() {
+    return { schemaVersion: 1, revision: 0, updatedAt: null, reviews: {}, links: [], history: [] };
+}
+function parseSnapshot(raw) {
+    try {
+        const data = JSON.parse(raw);
+        if (record(data) && keysOnly(data, ['schemaVersion', 'revision', 'updatedAt', 'reviews', 'links', 'history']) &&
+            data.schemaVersion === 1 && typeof data.revision === 'number' &&
+            Number.isSafeInteger(data.revision) && data.revision >= 1 && instant(data.updatedAt) &&
+            record(data.reviews) && Object.keys(data.reviews).length <= MEMORY_ANNOTATION_LIMITS.reviews &&
+            Object.entries(data.reviews).every(([id, review]) => identifier(id) && validReview(review)) &&
+            Array.isArray(data.links) && data.links.length <= MEMORY_ANNOTATION_LIMITS.links &&
+            data.links.every(validLink) && !graphProblem(data.links) && validHistory(data.history, data.revision) &&
+            data.history[data.history.length - 1].at === data.updatedAt) {
+            return {
+                schemaVersion: 1, revision: data.revision, updatedAt: data.updatedAt,
+                reviews: data.reviews, links: data.links, history: data.history,
+            };
+        }
+    }
+    catch { /* Preserve store bytes and report the schema error without content. */ }
+    throw new MemoryAnnotationsError('ANNOTATIONS_INVALID_STORE', 'Memory annotations are malformed or use an unsupported schema.');
+}
+/** Use the latest review and replacement relation for the supplied project and memory. */
+export function memoryState(snapshot, projectId, memoryId) {
+    if (snapshot.links.some(link => link.type === 'supersedes' && link.projectId === projectId && link.toId === memoryId)) {
+        return 'superseded';
+    }
+    const review = snapshot.reviews[memoryId];
+    return review?.projectId === projectId ? review.state : 'active';
+}
+/** Collect curated exclusions for a caller already pinned to this project. */
+export function excludedMemoryIds(snapshot, projectId) {
+    const ids = new Set();
+    for (const [id, review] of Object.entries(snapshot.reviews)) {
+        if (review.projectId === projectId && review.state !== 'active')
+            ids.add(id);
+    }
+    for (const link of snapshot.links) {
+        if (link.projectId === projectId && link.type === 'supersedes')
+            ids.add(link.toId);
+    }
+    return ids;
+}
+/** Independent local curation state. The original memory store remains schema version 1. */
+export class MemoryAnnotationsStore {
+    constructor(options) {
+        this.filePath = path.resolve(options.filePath ?? path.join(os.homedir(), '.shadow-brain', MEMORY_ANNOTATIONS_FILENAME));
+        this.resolveMemory = options.resolveMemory;
+        this.lockTimeout = typeof options.lockTimeoutMs === 'number' && Number.isFinite(options.lockTimeoutMs)
+            ? Math.max(0, Math.min(60000, options.lockTimeoutMs))
+            : LOCK_TIMEOUT;
+    }
+    get() {
+        let raw;
+        try {
+            const stat = fs.lstatSync(this.filePath, { throwIfNoEntry: false });
+            if (!stat)
+                return emptySnapshot();
+            if (!stat.isFile() || stat.isSymbolicLink() || stat.nlink !== 1) {
+                throw new MemoryAnnotationsError('ANNOTATIONS_INVALID_STORE', 'Memory annotations must be a regular local file.');
+            }
+            if (stat.size > MEMORY_ANNOTATION_LIMITS.bytes) {
+                throw new MemoryAnnotationsError('ANNOTATIONS_INVALID_STORE', 'Memory annotation file exceeds its size limit.');
+            }
+            const fd = fs.openSync(this.filePath, fs.constants.O_RDONLY | (fs.constants.O_NOFOLLOW ?? 0));
+            try {
+                const current = fs.fstatSync(fd);
+                if (!current.isFile() || current.nlink !== 1 || current.size > MEMORY_ANNOTATION_LIMITS.bytes) {
+                    throw new MemoryAnnotationsError('ANNOTATIONS_INVALID_STORE', 'Memory annotation file changed or exceeds its size limit.');
+                }
+                raw = fs.readFileSync(fd, 'utf8');
+            }
+            finally {
+                fs.closeSync(fd);
+            }
+        }
+        catch (error) {
+            if (error instanceof MemoryAnnotationsError)
+                throw error;
+            throw new MemoryAnnotationsError('ANNOTATIONS_READ_FAILED', 'Could not read memory annotations.');
+        }
+        return parseSnapshot(raw);
+    }
+    async update(raw, expectedRevision) {
+        const command = parseCommand(raw);
+        if (!command || (expectedRevision !== undefined &&
+            (!Number.isSafeInteger(expectedRevision) || expectedRevision < 0))) {
+            throw new MemoryAnnotationsError('ANNOTATIONS_INVALID_COMMAND', 'Invalid memory annotation command or revision.');
+        }
+        try {
+            fs.mkdirSync(path.dirname(this.filePath), { recursive: true });
+        }
+        catch {
+            throw new MemoryAnnotationsError('ANNOTATIONS_WRITE_FAILED', 'Could not open the memory annotation directory.');
+        }
+        const release = await this.acquireLock();
+        try {
+            const snapshot = this.get();
+            if (expectedRevision !== undefined && expectedRevision !== snapshot.revision) {
+                throw new MemoryAnnotationsError('ANNOTATIONS_CONFLICT', 'Memory annotations changed. Refresh and retry the update.');
+            }
+            if (snapshot.revision === Number.MAX_SAFE_INTEGER) {
+                throw new MemoryAnnotationsError('ANNOTATIONS_INVALID_STORE', 'Memory annotation revision has reached its limit.');
+            }
+            const at = new Date().toISOString();
+            const revision = snapshot.revision + 1;
+            const event = this.apply(snapshot, command, revision, at);
+            snapshot.revision = revision;
+            snapshot.updatedAt = at;
+            snapshot.history = [...snapshot.history, event].slice(-MEMORY_ANNOTATION_LIMITS.history);
+            this.replace(snapshot);
+            return snapshot;
+        }
+        finally {
+            release();
+        }
+    }
+    requireMemory(id, projectId) {
+        const memory = this.resolveMemory(id);
+        if (memory?.id !== id || memory.projectId !== projectId) {
+            throw new MemoryAnnotationsError('ANNOTATIONS_NOT_FOUND', 'Memory was not found in the selected project.');
+        }
+    }
+    apply(snapshot, command, revision, at) {
+        if (command.kind === 'unlink') {
+            const index = snapshot.links.findIndex(link => link.id === command.linkId);
+            if (index < 0)
+                throw new MemoryAnnotationsError('ANNOTATIONS_NOT_FOUND', 'Memory relation was not found.');
+            const [removed] = snapshot.links.splice(index, 1);
+            return { command, revision, at, projectId: removed.projectId, relationId: removed.id, relation: removed };
+        }
+        const { projectId } = command;
+        if (command.kind === 'review') {
+            this.requireMemory(command.memoryId, projectId);
+            const previous = snapshot.reviews[command.memoryId];
+            if (previous && previous.projectId !== projectId) {
+                throw new MemoryAnnotationsError('ANNOTATIONS_CONFLICT', 'Memory identity no longer matches its recorded project.');
+            }
+            if (!previous && Object.keys(snapshot.reviews).length >= MEMORY_ANNOTATION_LIMITS.reviews) {
+                throw new MemoryAnnotationsError('ANNOTATIONS_INVALID_COMMAND', 'Memory review storage limit reached.');
+            }
+            snapshot.reviews[command.memoryId] = { projectId, state: command.state, note: command.note ?? '', updatedAt: at };
+            return { command, revision, at, projectId, ...(previous ? { previousReview: previous } : {}) };
+        }
+        this.requireMemory(command.fromId, projectId);
+        this.requireMemory(command.toId, projectId);
+        if (snapshot.links.length >= MEMORY_ANNOTATION_LIMITS.links) {
+            throw new MemoryAnnotationsError('ANNOTATIONS_INVALID_COMMAND', 'Memory relation storage limit reached.');
+        }
+        const relation = {
+            id: randomUUID(), projectId, fromId: command.fromId, toId: command.toId,
+            type: command.type, note: command.note ?? '', createdAt: at,
+        };
+        snapshot.links.push(relation);
+        const problem = graphProblem(snapshot.links);
+        if (problem)
+            throw new MemoryAnnotationsError('ANNOTATIONS_INVALID_COMMAND', problem);
+        return { command, revision, at, projectId, relationId: relation.id, relation };
+    }
+    async acquireLock() {
+        const lock = this.filePath + '.lock';
+        const deadline = performance.now() + this.lockTimeout;
+        for (;;) {
+            let fd;
+            try {
+                fd = fs.openSync(lock, 'wx', 0o600);
+            }
+            catch (error) {
+                if (errno(error) !== 'EEXIST')
+                    throw new MemoryAnnotationsError('ANNOTATIONS_LOCK_FAILED', 'Could not acquire the memory annotation lock.');
+                const remaining = deadline - performance.now();
+                if (remaining <= 0)
+                    break;
+                await delay(Math.min(remaining, LOCK_POLL));
+                if (performance.now() >= deadline)
+                    break;
+                continue;
+            }
+            let owner;
+            try {
+                owner = fs.fstatSync(fd, { bigint: true });
+                fs.writeFileSync(fd, JSON.stringify({ pid: process.pid, acquiredAt: new Date().toISOString() }));
+                fs.closeSync(fd);
+            }
+            catch {
+                try {
+                    fs.closeSync(fd);
+                }
+                catch { /* retain the original lock failure */ }
+                try {
+                    if (owner)
+                        this.unlinkOwnedLock(lock, owner);
+                }
+                catch { /* preserve an unfamiliar lock */ }
+                throw new MemoryAnnotationsError('ANNOTATIONS_LOCK_FAILED', 'Could not initialize the memory annotation lock.');
+            }
+            const owned = owner;
+            return () => this.unlinkOwnedLock(lock, owned);
+        }
+        throw new MemoryAnnotationsError('ANNOTATIONS_LOCK_TIMEOUT', 'Timed out waiting for the memory annotation lock.');
+    }
+    unlinkOwnedLock(lock, owner) {
+        try {
+            const current = fs.lstatSync(lock, { bigint: true, throwIfNoEntry: false });
+            if (!matchesFileIdentity(lock, owner, current))
+                throw new Error('Lock ownership changed.');
+            fs.unlinkSync(lock);
+        }
+        catch {
+            throw new MemoryAnnotationsError('ANNOTATIONS_LOCK_FAILED', 'Could not release the memory annotation lock.');
+        }
+    }
+    replace(snapshot) {
+        const payload = JSON.stringify(snapshot, null, 2) + '\n';
+        if (Buffer.byteLength(payload) > MEMORY_ANNOTATION_LIMITS.bytes) {
+            throw new MemoryAnnotationsError('ANNOTATIONS_INVALID_COMMAND', 'Memory annotation storage limit reached.');
+        }
+        const temporary = this.filePath + '.' + randomUUID() + '.tmp';
+        let created = false;
+        try {
+            const fd = fs.openSync(temporary, 'wx', 0o600);
+            created = true;
+            try {
+                fs.writeFileSync(fd, payload);
+                fs.fsyncSync(fd);
+            }
+            finally {
+                fs.closeSync(fd);
+            }
+            fs.renameSync(temporary, this.filePath);
+            created = false;
+        }
+        catch {
+            throw new MemoryAnnotationsError('ANNOTATIONS_WRITE_FAILED', 'Could not save memory annotations.');
+        }
+        finally {
+            if (created) {
+                try {
+                    fs.unlinkSync(temporary);
+                }
+                catch { /* retain the original write failure */ }
+            }
+        }
+    }
+}
+export function memoryAnnotationsFor(brain) {
+    return new MemoryAnnotationsStore({
+        filePath: path.join(path.dirname(brain.dbPath), MEMORY_ANNOTATIONS_FILENAME),
+        resolveMemory: id => brain.getEntry(id),
+    });
+}
+//# sourceMappingURL=memory-annotations.js.map

package/dist/brain/memory-annotations.js.map

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package/dist/brain/memory-graph.d.ts.map

@@ -1 +1 @@
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package/dist/brain/memory-graph.js

@@ -9,29 +9,22 @@
 //
 // Zero new dependencies. Pure in-memory derivation from the global brain.
 import { getGlobalBrain } from './global-brain.js';
+import { normalizeMemorySources } from './memory-sources.js';
+function boundedInteger(n, fallback, lo, hi) {
+    return typeof n === 'number' && Number.isFinite(n) ? Math.max(lo, Math.min(hi, Math.trunc(n))) : fallback;
+}
 const clamp = (n, lo, hi) => Math.max(lo, Math.min(hi, n));
 export class MemoryGraph {
     /** Build a constellation snapshot from the current global brain. */
     async build(opts = {}) {
-        const limit = clamp(opts.limit ?? 400, 1, 2000);
-        const maxNodes = clamp(opts.maxNodes ?? 180, 20, 600);
-        const maxRelated = clamp(opts.maxRelatedPerNode ?? 6, 1, 20);
+        const limit = boundedInteger(opts.limit, 400, 1, 2000);
+        const maxNodes = boundedInteger(opts.maxNodes, 180, 20, 600);
+        const maxRelated = boundedInteger(opts.maxRelatedPerNode, 6, 1, 20);
         const minImportance = opts.minImportance ?? 0;
-        let entries = [];
-        let projectScoped = false;
-        try {
-            const brain = getGlobalBrain();
-            await brain.init();
-            if (opts.projectId) {
-                entries = brain.recall({ projectId: opts.projectId, minImportance, limit });
-                projectScoped = entries.length > 0;
-            }
-            if (!entries.length)
-                entries = brain.recall({ minImportance, limit });
-        }
-        catch {
-            entries = [];
-        }
+        const brain = getGlobalBrain();
+        await brain.init();
+        const projectScoped = !!opts.projectId;
+        const entries = brain.recall({ projectId: opts.projectId, minImportance, limit });
         if (!entries.length) {
             return {
                 nodes: [], edges: [],
@@ -73,10 +66,6 @@ export class MemoryGraph {
                 return raw.split(',').map(t => t.trim().toLowerCase()).filter(Boolean);
             return [];
         };
-        const sourcesOf = (e) => {
-            const raw = e.metadata?.sources;
-            return Array.isArray(raw) ? raw.map(String) : [];
-        };
         // ── Build typed nodes + structural edges ────────────────────────────────
         const memTags = new Map();
         for (const e of entries) {
@@ -87,7 +76,7 @@ export class MemoryGraph {
                 agentTool: e.agentTool,
                 category: e.category,
                 importance: e.importance,
-                sources: sourcesOf(e),
+                sources: normalizeMemorySources(e.metadata),
                 tags: tagsOf(e),
                 createdAt: e.createdAt,
             });

package/dist/brain/memory-graph.js.map

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package/dist/brain/memory-inspection.d.ts

@@ -0,0 +1,73 @@
+import type { GlobalBrain } from './global-brain.js';
+import { type MemoryAnnotationSnapshot, type EffectiveMemoryState } from './memory-annotations.js';
+type InspectionSource = Pick<GlobalBrain, 'timeline' | 'getEntry'>;
+type IssueKind = 'contested' | 'contradiction' | 'orphaned-link' | 'duplicate' | 'no-source' | 'older-memory';
+export interface MemoryAttentionItem {
+    id: string;
+    projectId: string;
+    title: string;
+    category: string;
+    state: EffectiveMemoryState;
+    sources: string[];
+    createdAt: string | null;
+    issues: Array<{
+        kind: IssueKind;
+        label: string;
+        severity: 'review' | 'info';
+    }>;
+    priority: number;
+}
+export interface MemoryHealthReport {
+    checkedAt: string;
+    projectId: string | null;
+    coverage: {
+        scanned: number;
+        limit: number;
+        truncated: boolean;
+    };
+    counts: {
+        total: number;
+        active: number;
+        archived: number;
+        contested: number;
+        superseded: number;
+        sourceBacked: number;
+        withoutSources: number;
+        reviewed: number;
+        olderThan90Days: number;
+        duplicateEntries: number;
+        contradictionLinks: number;
+        orphanedLinks: number;
+    };
+    queue: MemoryAttentionItem[];
+    queueTotal: number;
+    warnings: string[];
+}
+export declare function requireMemoryIdentifier(value: unknown, name?: string): asserts value is string;
+/** Inspection never follows source paths, fetches URLs, writes reviews, or records a recall. */
+export declare function inspectMemory(brain: InspectionSource, annotations: MemoryAnnotationSnapshot, projectId: string, memoryId: string): {
+    id: string;
+    projectId: string;
+    projectName: string;
+    category: string;
+    agentTool: import("../types.js").AgentTool;
+    content: string;
+    contentTruncated: boolean;
+    createdAt: string | null;
+    state: EffectiveMemoryState;
+    sources: string[];
+    review: import("./memory-annotations.js").MemoryReview | null;
+    links: import("./memory-annotations.js").MemoryRelation[];
+    linksTruncated: boolean;
+    revision: number;
+    sourceVerification: string;
+} | null;
+/** Deterministic attention hints over a bounded, project-first snapshot. No truth or accuracy score. */
+export declare function inspectMemoryHealth(brain: InspectionSource, annotations: MemoryAnnotationSnapshot, options?: {
+    projectId?: string;
+    limit?: number;
+    now?: Date;
+    excludeIds?: ReadonlySet<string>;
+}): MemoryHealthReport;
+export {};
+//# sourceMappingURL=memory-inspection.d.ts.map