@theglitchking/semantic-pages 0.5.0 → 0.6.1

package/.claude-plugin/marketplace.json

@@ -0,0 +1,47 @@
+{
+  "name": "semantic-pages-marketplace",
+  "owner": {
+    "name": "TheGlitchKing",
+    "email": "theglitchking@users.noreply.github.com"
+  },
+  "metadata": {
+    "description": "Official marketplace for semantic-pages - Semantic search + knowledge graph MCP server with auto-wiring for .claude/.vault and hit-em-with-the-docs companion",
+    "version": "0.6.1"
+  },
+  "plugins": [
+    {
+      "name": "semantic-pages",
+      "description": "Semantic search + knowledge graph MCP server for markdown vaults. Auto-wires a read/write vault at .claude/.vault, and a read-only docs index at .documentation when hit-em-with-the-docs is also installed.",
+      "version": "0.6.1",
+      "author": {
+        "name": "TheGlitchKing"
+      },
+      "homepage": "https://github.com/TheGlitchKing/semantic-pages",
+      "repository": "https://github.com/TheGlitchKing/semantic-pages.git",
+      "license": "MIT",
+      "keywords": [
+        "mcp",
+        "semantic-search",
+        "knowledge-graph",
+        "markdown",
+        "vector-search",
+        "embeddings",
+        "wikilinks",
+        "vault",
+        "claude-code"
+      ],
+      "category": "search",
+      "tags": [
+        "mcp-server",
+        "semantic-search",
+        "knowledge-graph",
+        "auto-wire"
+      ],
+      "source": {
+        "source": "npm",
+        "package": "@theglitchking/semantic-pages"
+      },
+      "strict": true
+    }
+  ]
+}

package/.claude-plugin/plugin.json

@@ -0,0 +1,22 @@
+{
+  "name": "semantic-pages",
+  "description": "Semantic search + knowledge graph MCP server for markdown vaults. Auto-wires a read/write vault at .claude/.vault, and a read-only docs index at .documentation when hit-em-with-the-docs is also installed.",
+  "version": "0.6.1",
+  "author": {
+    "name": "TheGlitchKing",
+    "email": "theglitchking@users.noreply.github.com"
+  },
+  "license": "MIT",
+  "homepage": "https://github.com/TheGlitchKing/semantic-pages",
+  "repository": "https://github.com/TheGlitchKing/semantic-pages",
+  "keywords": [
+    "mcp",
+    "semantic-search",
+    "knowledge-graph",
+    "markdown",
+    "vector-search",
+    "embeddings",
+    "wikilinks",
+    "vault"
+  ]
+}

package/README.md

@@ -39,6 +39,48 @@ The index is stored in `.semantic-pages-index/` alongside your notes (gitignore
 - **File Watcher**: Incremental re-indexing on file changes with debounce
 - **Local Embeddings**: No API key, no network after first model download
 - **Zero Dependencies Beyond Node**: No Docker, no Python, no Obsidian, no GUI
+- **Auto-Wire**: Installing the Claude Code plugin auto-creates `./.claude/.vault/` and wires it as a read/write MCP server — no manual `.mcp.json` editing required
+- **Sister Plugin Companion**: When [`hit-em-with-the-docs`](https://github.com/TheGlitchKing/hit-em-with-the-docs) is also installed, a second **read-only** MCP server is auto-wired at `./.documentation/` so you can semantically search your docs without risking accidental writes to a tree that hewtd owns
+
+---
+
+## Sister Plugin: hit-em-with-the-docs
+
+[`hit-em-with-the-docs`](https://github.com/TheGlitchKing/hit-em-with-the-docs) is the **canonical writer** of `./.documentation/`. It scaffolds, classifies, maintains, and validates docs across 15 domains with a 22-field metadata schema. Semantic Pages is the **canonical reader** — when both plugins are installed, Semantic Pages auto-wires a read-only index of `./.documentation/` so Claude can search it, traverse its wikilinks, and list/read docs without any write primitives exposed. That split keeps hewtd the sole authority for writes while giving you semantic discovery over the result.
+
+### The matrix
+
+| `semantic-pages` installed | `hit-em-with-the-docs` installed | Result |
+|---|---|---|
+| ✗ | ✗ | nothing |
+| ✗ | ✓ | hewtd CLI only; `.documentation/` managed but not indexed |
+| ✓ | ✗ | single MCP at `./.claude/.vault` (read/write, auto-created) |
+| ✓ | ✓ | `./.claude/.vault` (read/write) **+** `./.documentation` (read-only) |
+
+### How the auto-wire works
+
+Semantic Pages ships a `SessionStart` hook that runs at the start of every Claude Code session and reconciles the project's `.mcp.json`:
+
+1. Always ensures `./.claude/.vault/` exists (creates if missing)
+2. Always ensures a `semantic-vault` MCP entry pointed at `./.claude/.vault` (read/write — your personal research notes, session artifacts, scratch graph)
+3. If `hit-em-with-the-docs` is in your enabled plugins **and** `./.documentation/` exists in the current project → adds a `semantic-pages` MCP entry pointed at `./.documentation` with `--read-only` (the 7 write tools are suppressed at the MCP tool list level)
+4. If either condition stops being true → idempotently removes the `semantic-pages` entry (self-healing when you uninstall hewtd or the docs tree goes away)
+
+The hook is a no-op when the computed `.mcp.json` matches what's already on disk, so there's no git churn from repeated session starts. It only touches its own entries — any custom MCP servers you've added (playwright, custom tools, etc.) are left untouched. If you've manually defined a `semantic-pages` entry pointing at a non-`.documentation` path, the hook respects it and leaves it alone.
+
+### Why read-only for `.documentation/`
+
+`./.documentation/` is a **managed tree** — hewtd owns the lifecycle (creates files, classifies them, maintains frontmatter, prunes stale entries, checks links). If Semantic Pages also exposed `create_note`, `update_note`, `delete_note`, `move_note`, `update_frontmatter`, `manage_tags`, and `rename_tag` over that tree, you'd have two writers racing over the same schema and hewtd couldn't guarantee its invariants. Read-only gives you semantic discovery without that risk. Your personal `.claude/.vault/` stays fully read/write — hewtd doesn't touch it, so Semantic Pages is the sole writer there and all 21 tools are available.
+
+### The `--read-only` flag
+
+The auto-wire uses a new `--read-only` CLI flag (v0.6.0+) that filters out the 7 write tools from the MCP server's tool list at startup. You can use it manually anywhere:
+
+```bash
+semantic-pages --notes ./any-shared-vault --read-only
+```
+
+Only the 14 read tools are exposed (`search_*`, `read_note`, `read_multiple_notes`, `list_notes`, `backlinks`, `forwardlinks`, `graph_path`, `graph_statistics`, `get_frontmatter`, `get_stats`, `reindex`).
 
 ---
 
@@ -120,6 +162,24 @@ npm install --save-dev @theglitchking/semantic-pages
 }
 ```
 
+#### Method E: Claude Code Plugin (Recommended — zero config, auto-wires)
+
+This is the easiest path if you use Claude Code and want `.claude/.vault/` + (optionally) `.documentation/` indexed automatically.
+
+```bash
+# Inside a Claude Code session:
+/plugin marketplace add TheGlitchKing/semantic-pages
+/plugin install semantic-pages@semantic-pages-marketplace
+```
+
+What happens next session:
+1. A `SessionStart` hook runs and ensures `./.claude/.vault/` exists
+2. Your project's `.mcp.json` gets a `semantic-vault` entry pointed at `./.claude/.vault` (read/write)
+3. **If** `hit-em-with-the-docs` is also installed **and** `./.documentation/` exists → a second `semantic-pages` entry is added, pointed at `./.documentation` with `--read-only`
+4. You get 21 tools (14 if the docs server is the one being used) for semantic search, graph traversal, and (for the vault) note CRUD
+
+No manual `.mcp.json` editing. Uninstalling the plugin cleanly leaves your existing entries alone on the next session.
+
 ---
 
 ### 2. How to Use
@@ -401,31 +461,13 @@ The deployment guide links to the microservices overview, which links to the use
 semantic-pages --notes ./vault --stats
 ```
 
-### Adding Semantic Pages to a Project (30 seconds)
-```bash
-# Auto-detects hit-em-with-the-docs and configures one or two vaults
-npx @theglitchking/semantic-pages@latest init
-
-# Then start Claude — it now has 21 (or 42) note tools
-claude
-```
-
-**What `init` does**:
-- Detects [hit-em-with-the-docs](https://github.com/TheGlitchKing/hit-em-with-the-docs) by checking for `.documentation/INDEX.md`, `.hewtd.json`, or the `hewtd` binary
-- **If detected** → configures two vaults: `semantic-pages → .documentation/` (project docs, search-only) and `semantic-vault → .claude/.vault/` (research notes, read+write). Creates `.claude/.vault/` if absent.
-- **If not detected** → configures a single vault: `semantic-pages → ./vault/` (or `--notes <path>` override). Creates the directory if absent.
-- Merges into existing `.mcp.json` without clobbering other servers (playwright, etc.)
-- Adds index directories to `.gitignore`
-
-**Manual setup (if preferred)**:
+### Adding Semantic Pages to a Project (2 minutes)
 ```bash
 # Step 1: Create .mcp.json in your project root
 echo '{
-  "mcpServers": {
-    "semantic-pages": {
-      "command": "npx",
-      "args": ["-y", "@theglitchking/semantic-pages@latest", "--notes", "./notes"]
-    }
+  "semantic-pages": {
+    "command": "npx",
+    "args": ["-y", "semantic-pages", "--notes", "./notes"]
   }
 }' > .mcp.json
 
@@ -533,7 +575,7 @@ src/
 
 **Frontmatter is optional.** Every note gets a modification timestamp regardless — resolved from frontmatter date fields if present, otherwise from the file's `fs.stat` mtime. When frontmatter fields like `status`, `tier`, `domains`, `load_priority`, or `purpose` are present, they're indexed and exposed through all search tools as filters and score boosters. Plain notes with no frontmatter work exactly as before.
 
-If you want structured frontmatter with a full schema (22 fields, 15 domains, health scoring), [**hit-em-with-the-docs**](https://github.com/TheGlitchKing/hit-em-with-the-docs) is a companion tool that manages docs for Claude Code projects — its schema is natively understood by Semantic Pages.
+If you want structured frontmatter with a full schema (22 fields, 15 domains, health scoring), [**hit-em-with-the-docs**](https://github.com/TheGlitchKing/hit-em-with-the-docs) is Semantic Pages' **sister plugin** (see [Sister Plugin: hit-em-with-the-docs](#sister-plugin-hit-em-with-the-docs) above). It manages `./.documentation/` as a writer-owned tree; Semantic Pages auto-wires a read-only index of it when both plugins are installed. All hewtd frontmatter fields are natively understood by the indexer.
 
 #### Step 2: Chunk
 ```

package/dist/cli/index.js

@@ -2,9 +2,8 @@
 
 // src/cli/index.ts
 import { program } from "commander";
-import { resolve, join } from "path";
-import { existsSync, mkdirSync, readFileSync, writeFileSync } from "fs";
-import { spawnSync } from "child_process";
+import { resolve } from "path";
+import { existsSync } from "fs";
 var TOOL_HELP = {
   // Search
   search_semantic: {
@@ -199,8 +198,8 @@ function printToolDetail(name) {
   console.log();
 }
 program.name("semantic-pages").description(
-  "Semantic search + knowledge graph MCP server for markdown files\n\n  Auto-configure:    semantic-pages init\n  Start MCP server:  semantic-pages --notes ./vault\n  Show vault stats:  semantic-pages --notes ./vault --stats\n  Force reindex:     semantic-pages --notes ./vault --reindex\n  List MCP tools:    semantic-pages tools\n  Tool details:      semantic-pages tools search_semantic"
-).version("0.5.0");
+  "Semantic search + knowledge graph MCP server for markdown files\n\n  Start MCP server:  semantic-pages --notes ./vault\n  Show vault stats:  semantic-pages --notes ./vault --stats\n  Force reindex:     semantic-pages --notes ./vault --reindex\n  List MCP tools:    semantic-pages tools\n  Tool details:      semantic-pages tools search_semantic"
+).version("0.4.3");
 program.command("tools [name]").description("List all MCP tools, or show details for a specific tool").action((name) => {
   if (name) {
     printToolDetail(name);
@@ -209,7 +208,7 @@ program.command("tools [name]").description("List all MCP tools, or show details
   }
   process.exit(0);
 });
-program.command("serve", { isDefault: true }).description("Start the MCP server (default command)").requiredOption("--notes <path>", "Path to markdown notes directory").option("--reindex", "Force full reindex and exit").option("--stats", "Show vault statistics and exit").option("--model <name>", "Embedding model to use (default: all-MiniLM-L6-v2, fast; use nomic-ai/nomic-embed-text-v1.5 for higher quality)").option("--workers <n>", "Number of worker threads for parallel embedding", parseInt).option("--batch-size <n>", "Texts per ONNX forward pass (default: 8)", parseInt).option("--no-quantized", "Use full-precision model instead of quantized (slower, slightly higher quality)").option("--no-watch", "Disable file watcher").action(async (opts) => {
+program.command("serve", { isDefault: true }).description("Start the MCP server (default command)").requiredOption("--notes <path>", "Path to markdown notes directory").option("--reindex", "Force full reindex and exit").option("--stats", "Show vault statistics and exit").option("--read-only", "Suppress write tools (create_note, update_note, delete_note, move_note, update_frontmatter, manage_tags, rename_tag) \u2014 use for shared docs vaults owned by another tool").option("--model <name>", "Embedding model to use (default: all-MiniLM-L6-v2, fast; use nomic-ai/nomic-embed-text-v1.5 for higher quality)").option("--workers <n>", "Number of worker threads for parallel embedding", parseInt).option("--batch-size <n>", "Texts per ONNX forward pass (default: 8)", parseInt).option("--no-quantized", "Use full-precision model instead of quantized (slower, slightly higher quality)").option("--no-watch", "Disable file watcher").action(async (opts) => {
   const notesPath = resolve(opts.notes);
   if (!existsSync(notesPath)) {
     console.error(`Error: notes directory not found: ${notesPath}`);
@@ -243,100 +242,14 @@ program.command("serve", { isDefault: true }).description("Start the MCP server
     process.exit(0);
   }
   const { startServer } = await import("../mcp/server.js");
-  await startServer(notesPath, { watch: opts.watch, model: opts.model, workers: opts.workers, batchSize: opts.batchSize, quantized: opts.quantized });
-});
-function detectHewtd(cwd) {
-  if (existsSync(join(cwd, ".documentation", "INDEX.md"))) return true;
-  if (existsSync(join(cwd, ".hewtd.json"))) return true;
-  try {
-    const r = spawnSync("hewtd", ["--version"], { stdio: "ignore" });
-    if (r.status === 0) return true;
-  } catch {
-  }
-  return false;
-}
-function readMcpJson(cwd) {
-  const mcpPath = join(cwd, ".mcp.json");
-  if (!existsSync(mcpPath)) return {};
-  try {
-    return JSON.parse(readFileSync(mcpPath, "utf8"));
-  } catch {
-    console.warn("  \u26A0  Could not parse existing .mcp.json \u2014 will merge carefully.");
-    return {};
-  }
-}
-function writeMcpJson(cwd, config) {
-  writeFileSync(join(cwd, ".mcp.json"), JSON.stringify(config, null, 2) + "\n", "utf8");
-}
-function ensureGitignore(cwd, entry) {
-  const gitignorePath = join(cwd, ".gitignore");
-  if (existsSync(gitignorePath)) {
-    const content = readFileSync(gitignorePath, "utf8");
-    if (!content.includes(entry)) {
-      writeFileSync(gitignorePath, content.trimEnd() + "\n" + entry + "\n", "utf8");
-    }
-  } else {
-    writeFileSync(gitignorePath, entry + "\n", "utf8");
-  }
-}
-function mcpEntry(notesPath) {
-  return {
-    type: "stdio",
-    command: "npx",
-    args: ["-y", "@theglitchking/semantic-pages@latest", "--notes", notesPath]
-  };
-}
-program.command("init").description(
-  "Auto-configure MCP servers for this project.\nDetects hit-em-with-the-docs and sets up one or two vaults accordingly."
-).option("--notes <path>", "Custom notes path (single-vault fallback only)").option("--cwd <path>", "Project root to configure (default: current directory)").action((opts) => {
-  const cwd = resolve(opts.cwd || process.cwd());
-  const hewtd = detectHewtd(cwd);
-  console.log("\nSemantic Pages \u2014 init\n");
-  console.log(`  Project root : ${cwd}`);
-  console.log(`  hit-em-with-the-docs : ${hewtd ? "\u2705 detected" : "not found"}
-`);
-  const existing = readMcpJson(cwd);
-  const servers = existing.mcpServers ?? {};
-  const notesPath = opts.notes || "./vault";
-  if (hewtd) {
-    servers["semantic-pages"] = mcpEntry("./.documentation");
-    servers["semantic-vault"] = mcpEntry("./.claude/.vault");
-    const vaultDir = join(cwd, ".claude", ".vault");
-    if (!existsSync(vaultDir)) {
-      mkdirSync(vaultDir, { recursive: true });
-      writeFileSync(join(vaultDir, ".gitkeep"), "", "utf8");
-      console.log("  Created  .claude/.vault/");
-    }
-    ensureGitignore(cwd, ".documentation/.semantic-pages-index/");
-    ensureGitignore(cwd, ".claude/.vault/.semantic-pages-index/");
-    console.log("  Configured semantic-pages  \u2192  .documentation/   (project docs, read-only)");
-    console.log("  Configured semantic-vault  \u2192  .claude/.vault/    (research notes, read+write)");
-  } else {
-    servers["semantic-pages"] = mcpEntry(notesPath);
-    const vaultDir = resolve(cwd, notesPath);
-    if (!existsSync(vaultDir)) {
-      mkdirSync(vaultDir, { recursive: true });
-      console.log(`  Created  ${notesPath}/`);
-    }
-    ensureGitignore(cwd, ".semantic-pages-index/");
-    console.log(`  Configured semantic-pages  \u2192  ${notesPath}/`);
-  }
-  writeMcpJson(cwd, { ...existing, mcpServers: servers });
-  console.log("  Updated  .mcp.json");
-  console.log("  Updated  .gitignore\n");
-  if (hewtd) {
-    console.log("  Next steps:");
-    console.log("    \u2022 Restart Claude \u2014 it will have 42 MCP tools across two vaults");
-    console.log("    \u2022 Search docs   : mcp__semantic-pages__search_hybrid");
-    console.log("    \u2022 Save research : mcp__semantic-vault__create_note\n");
-  } else {
-    console.log("  Next steps:");
-    console.log("    \u2022 Drop .md files into the vault directory");
-    console.log(`    \u2022 Restart Claude \u2014 it will have 21 MCP tools over ${notesPath}/
-`);
-    console.log("  Tip: install hit-em-with-the-docs for the two-vault setup:");
-    console.log("    npx @theglitchking/hit-em-with-the-docs init\n");
-  }
+  await startServer(notesPath, {
+    watch: opts.watch,
+    model: opts.model,
+    workers: opts.workers,
+    batchSize: opts.batchSize,
+    quantized: opts.quantized,
+    readOnly: opts.readOnly
+  });
 });
 program.parse();
 //# sourceMappingURL=index.js.map

package/dist/cli/index.js.map

@@ -1 +1 @@
-{"version":3,"sources":["../../src/cli/index.ts"],"sourcesContent":["#!/usr/bin/env node\n\nimport { program } from \"commander\";\nimport { resolve, join } from \"node:path\";\nimport { existsSync, mkdirSync, readFileSync, writeFileSync } from \"node:fs\";\nimport { spawnSync } from \"node:child_process\";\n\nconst TOOL_HELP: Record<string, { description: string; args: string; examples: string[] }> = {\n  // Search\n  search_semantic: {\n    description: \"Vector similarity search — find notes by meaning, not just keywords\",\n    args: '{ \"query\": \"string\", \"limit?\": 10 }',\n    examples: [\n      '{ \"query\": \"microservices architecture\", \"limit\": 5 }',\n      '{ \"query\": \"how to deploy to production\" }',\n    ],\n  },\n  search_text: {\n    description: \"Full-text keyword or regex search with optional filters\",\n    args: '{ \"pattern\": \"string\", \"regex?\": false, \"caseSensitive?\": false, \"pathGlob?\": \"string\", \"tagFilter?\": [\"string\"], \"limit?\": 20 }',\n    examples: [\n      '{ \"pattern\": \"RabbitMQ\" }',\n      '{ \"pattern\": \"OAuth\\\\\\\\d\", \"regex\": true }',\n      '{ \"pattern\": \"deploy\", \"pathGlob\": \"devops/**\", \"tagFilter\": [\"kubernetes\"] }',\n    ],\n  },\n  search_graph: {\n    description: \"Graph traversal — find notes connected to a concept via wikilinks and tags\",\n    args: '{ \"concept\": \"string\", \"maxDepth?\": 2 }',\n    examples: [\n      '{ \"concept\": \"microservices\" }',\n      '{ \"concept\": \"auth\", \"maxDepth\": 3 }',\n    ],\n  },\n  search_hybrid: {\n    description: \"Combined semantic + graph search — vector results re-ranked by graph proximity\",\n    args: '{ \"query\": \"string\", \"limit?\": 10 }',\n    examples: [\n      '{ \"query\": \"event driven architecture\", \"limit\": 5 }',\n    ],\n  },\n\n  // Read\n  read_note: {\n    description: \"Read the full content of a specific note by path\",\n    args: '{ \"path\": \"string\" }',\n    examples: [\n      '{ \"path\": \"project-overview.md\" }',\n      '{ \"path\": \"notes/meeting-2024-01-15.md\" }',\n    ],\n  },\n  read_multiple_notes: {\n    description: \"Batch read multiple notes in one call\",\n    args: '{ \"paths\": [\"string\"] }',\n    examples: [\n      '{ \"paths\": [\"overview.md\", \"architecture.md\", \"deployment.md\"] }',\n    ],\n  },\n  list_notes: {\n    description: \"List all indexed notes with metadata (title, tags, link count)\",\n    args: \"{}\",\n    examples: [\"{}\"],\n  },\n\n  // Write\n  create_note: {\n    description: \"Create a new markdown note with optional YAML frontmatter\",\n    args: '{ \"path\": \"string\", \"content\": \"string\", \"frontmatter?\": {} }',\n    examples: [\n      '{ \"path\": \"new-guide.md\", \"content\": \"# Guide\\\\n\\\\nContent here.\" }',\n      '{ \"path\": \"tagged.md\", \"content\": \"Content.\", \"frontmatter\": { \"title\": \"Tagged Note\", \"tags\": [\"test\"] } }',\n    ],\n  },\n  update_note: {\n    description: \"Edit note content — overwrite, append, prepend, or patch by heading\",\n    args: '{ \"path\": \"string\", \"content\": \"string\", \"mode\": \"overwrite|append|prepend|patch-by-heading\", \"heading?\": \"string\" }',\n    examples: [\n      '{ \"path\": \"guide.md\", \"content\": \"New content.\", \"mode\": \"overwrite\" }',\n      '{ \"path\": \"guide.md\", \"content\": \"\\\\n## Appendix\\\\nExtra info.\", \"mode\": \"append\" }',\n      '{ \"path\": \"guide.md\", \"content\": \"Updated architecture section.\", \"mode\": \"patch-by-heading\", \"heading\": \"Architecture\" }',\n    ],\n  },\n  delete_note: {\n    description: \"Delete a note permanently (requires confirm=true)\",\n    args: '{ \"path\": \"string\", \"confirm\": true }',\n    examples: [\n      '{ \"path\": \"old-note.md\", \"confirm\": true }',\n      '{ \"path\": \"old-note.md\", \"confirm\": false }  // returns warning, does not delete',\n    ],\n  },\n  move_note: {\n    description: \"Move or rename a note — automatically updates wikilinks across the vault\",\n    args: '{ \"from\": \"string\", \"to\": \"string\" }',\n    examples: [\n      '{ \"from\": \"user-service.md\", \"to\": \"auth-service.md\" }',\n      '{ \"from\": \"old/note.md\", \"to\": \"new/location/note.md\" }',\n    ],\n  },\n\n  // Metadata\n  get_frontmatter: {\n    description: \"Read parsed YAML frontmatter from a note as JSON\",\n    args: '{ \"path\": \"string\" }',\n    examples: ['{ \"path\": \"project-overview.md\" }'],\n  },\n  update_frontmatter: {\n    description: \"Set or delete YAML frontmatter keys — pass null to delete a key\",\n    args: '{ \"path\": \"string\", \"fields\": {} }',\n    examples: [\n      '{ \"path\": \"note.md\", \"fields\": { \"status\": \"active\", \"priority\": 1 } }',\n      '{ \"path\": \"note.md\", \"fields\": { \"deprecated_field\": null } }  // deletes the key',\n    ],\n  },\n  manage_tags: {\n    description: \"Add, remove, or list tags on a note (frontmatter and inline)\",\n    args: '{ \"path\": \"string\", \"action\": \"add|remove|list\", \"tags?\": [\"string\"] }',\n    examples: [\n      '{ \"path\": \"note.md\", \"action\": \"list\" }',\n      '{ \"path\": \"note.md\", \"action\": \"add\", \"tags\": [\"important\", \"reviewed\"] }',\n      '{ \"path\": \"note.md\", \"action\": \"remove\", \"tags\": [\"draft\"] }',\n    ],\n  },\n  rename_tag: {\n    description: \"Rename a tag across all notes in the vault (frontmatter + inline)\",\n    args: '{ \"oldTag\": \"string\", \"newTag\": \"string\" }',\n    examples: ['{ \"oldTag\": \"architecture\", \"newTag\": \"arch\" }'],\n  },\n\n  // Graph\n  backlinks: {\n    description: \"Find all notes that link TO a given note via [[wikilinks]]\",\n    args: '{ \"path\": \"string\" }',\n    examples: ['{ \"path\": \"microservices.md\" }'],\n  },\n  forwardlinks: {\n    description: \"Find all notes linked FROM a given note\",\n    args: '{ \"path\": \"string\" }',\n    examples: ['{ \"path\": \"project-overview.md\" }'],\n  },\n  graph_path: {\n    description: \"Find the shortest path between two notes in the knowledge graph\",\n    args: '{ \"from\": \"string\", \"to\": \"string\" }',\n    examples: ['{ \"from\": \"project-overview.md\", \"to\": \"user-service.md\" }'],\n  },\n  graph_statistics: {\n    description: \"Knowledge graph stats — most connected nodes, orphans, density\",\n    args: \"{}\",\n    examples: [\"{}\"],\n  },\n\n  // System\n  get_stats: {\n    description: \"Vault and index statistics — note count, chunks, embeddings, graph density\",\n    args: \"{}\",\n    examples: [\"{}\"],\n  },\n  reindex: {\n    description: \"Force a full reindex of the vault\",\n    args: \"{}\",\n    examples: [\"{}\"],\n  },\n};\n\nconst TOOL_CATEGORIES: Record<string, string[]> = {\n  Search: [\"search_semantic\", \"search_text\", \"search_graph\", \"search_hybrid\"],\n  Read: [\"read_note\", \"read_multiple_notes\", \"list_notes\"],\n  Write: [\"create_note\", \"update_note\", \"delete_note\", \"move_note\"],\n  Metadata: [\"get_frontmatter\", \"update_frontmatter\", \"manage_tags\", \"rename_tag\"],\n  Graph: [\"backlinks\", \"forwardlinks\", \"graph_path\", \"graph_statistics\"],\n  System: [\"get_stats\", \"reindex\"],\n};\n\nfunction printToolList() {\n  console.log(\"\\nSemantic Pages — 21 MCP Tools\\n\");\n  console.log(\"Usage: These tools are available via MCP when the server is running.\");\n  console.log(\"       Run `semantic-pages tools <name>` for details on a specific tool.\\n\");\n\n  for (const [category, tools] of Object.entries(TOOL_CATEGORIES)) {\n    console.log(`  ${category}:`);\n    for (const name of tools) {\n      const tool = TOOL_HELP[name];\n      console.log(`    ${name.padEnd(24)} ${tool.description}`);\n    }\n    console.log();\n  }\n\n  console.log(\"Run `semantic-pages tools <tool-name>` for arguments and examples.\");\n}\n\nfunction printToolDetail(name: string) {\n  const tool = TOOL_HELP[name];\n  if (!tool) {\n    console.error(`Unknown tool: ${name}`);\n    console.error(`Run \\`semantic-pages tools\\` to see all available tools.`);\n    process.exit(1);\n  }\n\n  console.log(`\\n  ${name}`);\n  console.log(`  ${\"─\".repeat(name.length)}`);\n  console.log(`  ${tool.description}\\n`);\n  console.log(`  Arguments:`);\n  console.log(`    ${tool.args}\\n`);\n  console.log(`  Examples:`);\n  for (const ex of tool.examples) {\n    console.log(`    ${ex}`);\n  }\n  console.log();\n}\n\nprogram\n  .name(\"semantic-pages\")\n  .description(\n    \"Semantic search + knowledge graph MCP server for markdown files\\n\\n\" +\n    \"  Auto-configure:    semantic-pages init\\n\" +\n    \"  Start MCP server:  semantic-pages --notes ./vault\\n\" +\n    \"  Show vault stats:  semantic-pages --notes ./vault --stats\\n\" +\n    \"  Force reindex:     semantic-pages --notes ./vault --reindex\\n\" +\n    \"  List MCP tools:    semantic-pages tools\\n\" +\n    \"  Tool details:      semantic-pages tools search_semantic\"\n  )\n  .version(\"0.5.0\");\n\nprogram\n  .command(\"tools [name]\")\n  .description(\"List all MCP tools, or show details for a specific tool\")\n  .action((name?: string) => {\n    if (name) {\n      printToolDetail(name);\n    } else {\n      printToolList();\n    }\n    process.exit(0);\n  });\n\nprogram\n  .command(\"serve\", { isDefault: true })\n  .description(\"Start the MCP server (default command)\")\n  .requiredOption(\"--notes <path>\", \"Path to markdown notes directory\")\n  .option(\"--reindex\", \"Force full reindex and exit\")\n  .option(\"--stats\", \"Show vault statistics and exit\")\n  .option(\"--model <name>\", \"Embedding model to use (default: all-MiniLM-L6-v2, fast; use nomic-ai/nomic-embed-text-v1.5 for higher quality)\")\n  .option(\"--workers <n>\", \"Number of worker threads for parallel embedding\", parseInt)\n  .option(\"--batch-size <n>\", \"Texts per ONNX forward pass (default: 8)\", parseInt)\n  .option(\"--no-quantized\", \"Use full-precision model instead of quantized (slower, slightly higher quality)\")\n  .option(\"--no-watch\", \"Disable file watcher\")\n  .action(async (opts) => {\n    const notesPath = resolve(opts.notes);\n\n    if (!existsSync(notesPath)) {\n      console.error(`Error: notes directory not found: ${notesPath}`);\n      process.exit(1);\n    }\n\n    if (opts.stats) {\n      const { Indexer } = await import(\"../core/indexer.js\");\n      const indexer = new Indexer(notesPath);\n      const docs = await indexer.indexAll();\n      console.log(`Notes: ${docs.length}`);\n      console.log(`Chunks: ${docs.reduce((n: number, d: any) => n + d.chunks.length, 0)}`);\n      console.log(`Wikilinks: ${docs.reduce((n: number, d: any) => n + d.wikilinks.length, 0)}`);\n      console.log(`Tags: ${new Set(docs.flatMap((d: any) => d.tags)).size} unique`);\n      process.exit(0);\n    }\n\n    if (opts.reindex) {\n      const { createServer } = await import(\"../mcp/server.js\");\n      await createServer(notesPath, {\n        watch: false,\n        waitForReady: true,\n        model: opts.model,\n        workers: opts.workers,\n        batchSize: opts.batchSize,\n        quantized: opts.quantized,\n        onProgress: (embedded, total) => {\n          process.stderr.write(`\\rEmbedding ${embedded}/${total} chunks...`);\n        },\n      });\n      process.stderr.write(\"\\n\");\n      console.log(\"Reindex complete.\");\n      process.exit(0);\n    }\n\n    // Default: start MCP server on stdio\n    const { startServer } = await import(\"../mcp/server.js\");\n    await startServer(notesPath, { watch: opts.watch, model: opts.model, workers: opts.workers, batchSize: opts.batchSize, quantized: opts.quantized });\n  });\n\n// ─── init command ────────────────────────────────────────────────────────────\n\nfunction detectHewtd(cwd: string): boolean {\n  // 1. hit-em-with-the-docs always creates .documentation/INDEX.md\n  if (existsSync(join(cwd, \".documentation\", \"INDEX.md\"))) return true;\n  // 2. Explicit config file\n  if (existsSync(join(cwd, \".hewtd.json\"))) return true;\n  // 3. hewtd binary available in PATH\n  try {\n    const r = spawnSync(\"hewtd\", [\"--version\"], { stdio: \"ignore\" });\n    if (r.status === 0) return true;\n  } catch {}\n  return false;\n}\n\nfunction readMcpJson(cwd: string): Record<string, unknown> {\n  const mcpPath = join(cwd, \".mcp.json\");\n  if (!existsSync(mcpPath)) return {};\n  try {\n    return JSON.parse(readFileSync(mcpPath, \"utf8\"));\n  } catch {\n    console.warn(\"  ⚠  Could not parse existing .mcp.json — will merge carefully.\");\n    return {};\n  }\n}\n\nfunction writeMcpJson(cwd: string, config: Record<string, unknown>): void {\n  writeFileSync(join(cwd, \".mcp.json\"), JSON.stringify(config, null, 2) + \"\\n\", \"utf8\");\n}\n\nfunction ensureGitignore(cwd: string, entry: string): void {\n  const gitignorePath = join(cwd, \".gitignore\");\n  if (existsSync(gitignorePath)) {\n    const content = readFileSync(gitignorePath, \"utf8\");\n    if (!content.includes(entry)) {\n      writeFileSync(gitignorePath, content.trimEnd() + \"\\n\" + entry + \"\\n\", \"utf8\");\n    }\n  } else {\n    writeFileSync(gitignorePath, entry + \"\\n\", \"utf8\");\n  }\n}\n\nfunction mcpEntry(notesPath: string) {\n  return {\n    type: \"stdio\",\n    command: \"npx\",\n    args: [\"-y\", \"@theglitchking/semantic-pages@latest\", \"--notes\", notesPath],\n  };\n}\n\nprogram\n  .command(\"init\")\n  .description(\n    \"Auto-configure MCP servers for this project.\\n\" +\n    \"Detects hit-em-with-the-docs and sets up one or two vaults accordingly.\"\n  )\n  .option(\"--notes <path>\", \"Custom notes path (single-vault fallback only)\")\n  .option(\"--cwd <path>\", \"Project root to configure (default: current directory)\")\n  .action((opts) => {\n    const cwd = resolve(opts.cwd || process.cwd());\n    const hewtd = detectHewtd(cwd);\n\n    console.log(\"\\nSemantic Pages — init\\n\");\n    console.log(`  Project root : ${cwd}`);\n    console.log(`  hit-em-with-the-docs : ${hewtd ? \"✅ detected\" : \"not found\"}\\n`);\n\n    // Read existing .mcp.json so we don't clobber other servers (e.g. playwright)\n    const existing = readMcpJson(cwd);\n    const servers: Record<string, unknown> = (existing as any).mcpServers ?? {};\n    const notesPath: string = (opts.notes as string) || \"./vault\";\n\n    if (hewtd) {\n      // Two-vault setup\n      servers[\"semantic-pages\"] = mcpEntry(\"./.documentation\");\n      servers[\"semantic-vault\"] = mcpEntry(\"./.claude/.vault\");\n\n      // Create .claude/.vault/ if absent\n      const vaultDir = join(cwd, \".claude\", \".vault\");\n      if (!existsSync(vaultDir)) {\n        mkdirSync(vaultDir, { recursive: true });\n        writeFileSync(join(vaultDir, \".gitkeep\"), \"\", \"utf8\");\n        console.log(\"  Created  .claude/.vault/\");\n      }\n\n      // Gitignore both indexes\n      ensureGitignore(cwd, \".documentation/.semantic-pages-index/\");\n      ensureGitignore(cwd, \".claude/.vault/.semantic-pages-index/\");\n\n      console.log(\"  Configured semantic-pages  →  .documentation/   (project docs, read-only)\");\n      console.log(\"  Configured semantic-vault  →  .claude/.vault/    (research notes, read+write)\");\n    } else {\n      // Single-vault fallback\n      servers[\"semantic-pages\"] = mcpEntry(notesPath);\n\n      // Create vault dir if absent\n      const vaultDir = resolve(cwd, notesPath);\n      if (!existsSync(vaultDir)) {\n        mkdirSync(vaultDir, { recursive: true });\n        console.log(`  Created  ${notesPath}/`);\n      }\n\n      ensureGitignore(cwd, \".semantic-pages-index/\");\n\n      console.log(`  Configured semantic-pages  →  ${notesPath}/`);\n    }\n\n    writeMcpJson(cwd, { ...existing, mcpServers: servers });\n    console.log(\"  Updated  .mcp.json\");\n    console.log(\"  Updated  .gitignore\\n\");\n\n    if (hewtd) {\n      console.log(\"  Next steps:\");\n      console.log(\"    • Restart Claude — it will have 42 MCP tools across two vaults\");\n      console.log(\"    • Search docs   : mcp__semantic-pages__search_hybrid\");\n      console.log(\"    • Save research : mcp__semantic-vault__create_note\\n\");\n    } else {\n      console.log(\"  Next steps:\");\n      console.log(\"    • Drop .md files into the vault directory\");\n      console.log(`    • Restart Claude — it will have 21 MCP tools over ${notesPath}/\\n`);\n      console.log(\"  Tip: install hit-em-with-the-docs for the two-vault setup:\");\n      console.log(\"    npx @theglitchking/hit-em-with-the-docs init\\n\");\n    }\n  });\n\n// 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+{"version":3,"sources":["../../src/cli/index.ts"],"sourcesContent":["#!/usr/bin/env node\n\nimport { program } from \"commander\";\nimport { resolve } from \"node:path\";\nimport { existsSync } from \"node:fs\";\n\nconst TOOL_HELP: Record<string, { description: string; args: string; examples: string[] }> = {\n  // Search\n  search_semantic: {\n    description: \"Vector similarity search — find notes by meaning, not just keywords\",\n    args: '{ \"query\": \"string\", \"limit?\": 10 }',\n    examples: [\n      '{ \"query\": \"microservices architecture\", \"limit\": 5 }',\n      '{ \"query\": \"how to deploy to production\" }',\n    ],\n  },\n  search_text: {\n    description: \"Full-text keyword or regex search with optional filters\",\n    args: '{ \"pattern\": \"string\", \"regex?\": false, \"caseSensitive?\": false, \"pathGlob?\": \"string\", \"tagFilter?\": [\"string\"], \"limit?\": 20 }',\n    examples: [\n      '{ \"pattern\": \"RabbitMQ\" }',\n      '{ \"pattern\": 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   ],\n  },\n  read_multiple_notes: {\n    description: \"Batch read multiple notes in one call\",\n    args: '{ \"paths\": [\"string\"] }',\n    examples: [\n      '{ \"paths\": [\"overview.md\", \"architecture.md\", \"deployment.md\"] }',\n    ],\n  },\n  list_notes: {\n    description: \"List all indexed notes with metadata (title, tags, link count)\",\n    args: \"{}\",\n    examples: [\"{}\"],\n  },\n\n  // Write\n  create_note: {\n    description: \"Create a new markdown note with optional YAML frontmatter\",\n    args: '{ \"path\": \"string\", \"content\": \"string\", \"frontmatter?\": {} }',\n    examples: [\n      '{ \"path\": \"new-guide.md\", \"content\": \"# Guide\\\\n\\\\nContent here.\" }',\n      '{ \"path\": \"tagged.md\", \"content\": \"Content.\", \"frontmatter\": { \"title\": \"Tagged Note\", \"tags\": [\"test\"] } }',\n    ],\n  },\n  update_note: {\n    description: \"Edit note content — overwrite, append, prepend, or patch by heading\",\n    args: '{ \"path\": 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\"rename_tag\"],\n  Graph: [\"backlinks\", \"forwardlinks\", \"graph_path\", \"graph_statistics\"],\n  System: [\"get_stats\", \"reindex\"],\n};\n\nfunction printToolList() {\n  console.log(\"\\nSemantic Pages — 21 MCP Tools\\n\");\n  console.log(\"Usage: These tools are available via MCP when the server is running.\");\n  console.log(\"       Run `semantic-pages tools <name>` for details on a specific tool.\\n\");\n\n  for (const [category, tools] of Object.entries(TOOL_CATEGORIES)) {\n    console.log(`  ${category}:`);\n    for (const name of tools) {\n      const tool = TOOL_HELP[name];\n      console.log(`    ${name.padEnd(24)} ${tool.description}`);\n    }\n    console.log();\n  }\n\n  console.log(\"Run `semantic-pages tools <tool-name>` for arguments and examples.\");\n}\n\nfunction printToolDetail(name: string) {\n  const tool = TOOL_HELP[name];\n  if (!tool) {\n    console.error(`Unknown tool: ${name}`);\n    console.error(`Run \\`semantic-pages tools\\` to see all available tools.`);\n    process.exit(1);\n  }\n\n  console.log(`\\n  ${name}`);\n  console.log(`  ${\"─\".repeat(name.length)}`);\n  console.log(`  ${tool.description}\\n`);\n  console.log(`  Arguments:`);\n  console.log(`    ${tool.args}\\n`);\n  console.log(`  Examples:`);\n  for (const ex of tool.examples) {\n    console.log(`    ${ex}`);\n  }\n  console.log();\n}\n\nprogram\n  .name(\"semantic-pages\")\n  .description(\n    \"Semantic search + knowledge graph MCP server for markdown files\\n\\n\" +\n    \"  Start MCP server:  semantic-pages --notes ./vault\\n\" +\n    \"  Show vault stats:  semantic-pages --notes ./vault --stats\\n\" +\n    \"  Force reindex:     semantic-pages --notes ./vault --reindex\\n\" +\n    \"  List MCP tools:    semantic-pages tools\\n\" +\n    \"  Tool details:      semantic-pages tools search_semantic\"\n  )\n  .version(\"0.4.3\");\n\nprogram\n  .command(\"tools [name]\")\n  .description(\"List all MCP tools, or show details for a specific tool\")\n  .action((name?: string) => {\n    if (name) {\n      printToolDetail(name);\n    } else {\n      printToolList();\n    }\n    process.exit(0);\n  });\n\nprogram\n  .command(\"serve\", { isDefault: true })\n  .description(\"Start the MCP server (default command)\")\n  .requiredOption(\"--notes <path>\", \"Path to markdown notes directory\")\n  .option(\"--reindex\", \"Force full reindex and exit\")\n  .option(\"--stats\", \"Show vault statistics and exit\")\n  .option(\"--read-only\", \"Suppress write tools (create_note, update_note, delete_note, move_note, update_frontmatter, manage_tags, rename_tag) — use for shared docs vaults owned by another tool\")\n  .option(\"--model <name>\", \"Embedding model to use (default: all-MiniLM-L6-v2, fast; use nomic-ai/nomic-embed-text-v1.5 for higher quality)\")\n  .option(\"--workers <n>\", \"Number of worker threads for parallel embedding\", parseInt)\n  .option(\"--batch-size <n>\", \"Texts per ONNX forward pass (default: 8)\", parseInt)\n  .option(\"--no-quantized\", \"Use full-precision model instead of quantized (slower, slightly higher quality)\")\n  .option(\"--no-watch\", \"Disable file watcher\")\n  .action(async (opts) => {\n    const notesPath = resolve(opts.notes);\n\n    if (!existsSync(notesPath)) {\n      console.error(`Error: notes directory not found: ${notesPath}`);\n      process.exit(1);\n    }\n\n    if (opts.stats) {\n      const { Indexer } = await import(\"../core/indexer.js\");\n      const indexer = new Indexer(notesPath);\n      const docs = await indexer.indexAll();\n      console.log(`Notes: ${docs.length}`);\n      console.log(`Chunks: ${docs.reduce((n: number, d: any) => n + d.chunks.length, 0)}`);\n      console.log(`Wikilinks: ${docs.reduce((n: number, d: any) => n + d.wikilinks.length, 0)}`);\n      console.log(`Tags: ${new Set(docs.flatMap((d: any) => d.tags)).size} unique`);\n      process.exit(0);\n    }\n\n    if (opts.reindex) {\n      const { createServer } = await import(\"../mcp/server.js\");\n      await createServer(notesPath, {\n        watch: false,\n        waitForReady: true,\n        model: opts.model,\n        workers: opts.workers,\n        batchSize: opts.batchSize,\n        quantized: opts.quantized,\n        onProgress: (embedded, total) => {\n          process.stderr.write(`\\rEmbedding ${embedded}/${total} chunks...`);\n        },\n      });\n      process.stderr.write(\"\\n\");\n      console.log(\"Reindex complete.\");\n      process.exit(0);\n    }\n\n    // Default: start MCP server on stdio\n    const { startServer } = await import(\"../mcp/server.js\");\n    await startServer(notesPath, {\n      watch: opts.watch,\n      model: opts.model,\n      workers: opts.workers,\n      batchSize: opts.batchSize,\n      quantized: opts.quantized,\n      readOnly: opts.readOnly,\n    });\n  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package/dist/mcp/server.d.ts

@@ -7,6 +7,7 @@ interface ServerOptions {
     workers?: number;
     batchSize?: number;
     quantized?: boolean;
+    readOnly?: boolean;
     onProgress?: (embedded: number, total: number) => void;
 }
 declare function createServer(notesPath: string, options?: ServerOptions): Promise<McpServer>;