@theglitchking/semantic-memory 1.5.2 → 1.5.3

package/dist/chunk-OFXQXVG5.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/core/lint.ts"],"sourcesContent":["import { readFile } from \"node:fs/promises\";\nimport { existsSync } from \"node:fs\";\nimport { basename, join } from \"node:path\";\nimport { glob } from \"glob\";\nimport matter from \"gray-matter\";\nimport { loadSchema, validateNote, type LintFinding, type VaultSchema } from \"./schema.js\";\nimport { deriveProjectRoot } from \"./session.js\";\nimport { computeDecay, loadDecayConfig, normalizeVerifiedDate } from \"./decay.js\";\nimport { readSelectionLog } from \"./telemetry.js\";\nimport { compileLexicon, findAliasConflicts } from \"./lexicon.js\";\nimport { findSecrets } from \"./redact.js\";\n\nexport interface LintReport {\n  schemaPath: string;\n  findings: LintFinding[];\n  byRule: {\n    schema_violations: LintFinding[];\n    missing_provenance: LintFinding[];\n    stale: LintFinding[];\n    broken_links: LintFinding[];\n    code_symbols: LintFinding[];\n    decay_candidates: LintFinding[];\n    alias_conflicts: LintFinding[];\n    decoys: LintFinding[];\n    /** only present when the opt-in secrets check ran */\n    secrets?: LintFinding[];\n  };\n  counts: {\n    errors: number;\n    warnings: number;\n    filesLinted: number;\n  };\n}\n\nexport async function lintVault(\n  notesPath: string,\n  opts: {\n    pathGlob?: string;\n    schemaOverride?: VaultSchema;\n    todayIso?: string;\n    /**\n     * When true, run the code-symbol drift check: flag inline-code file-path\n     * references in notes that no longer exist under the project root. Opt-in\n     * (off by default) so the standard report and the healthcheck slow tier stay\n     * quiet and byte-stable. Fails open when the project root is not a code repo.\n     */\n    checkCodeSymbols?: boolean;\n    /** Override the project root for code-symbol resolution (default: derived from notesPath). */\n    projectRoot?: string;\n    /**\n     * When true, run the decay-candidates check: cross-reference the selection\n     * log (notes that appeared in recent search results) against each note's\n     * current decay multiplier, and flag notes that are frequently retrieved yet\n     * heavily decayed (\"relevant but going stale — verify or revise\"). Opt-in;\n     * a silent no-op when no selection log exists.\n     */\n    checkDecayCandidates?: boolean;\n    /**\n     * When true, run the alias-conflict check: flag lexicon phrases that map to\n     * more than one canonical target (a wrong binding misroutes queries). Opt-in;\n     * no-op when the vault has no lexicon.\n     */\n    checkAliasConflicts?: boolean;\n    /**\n     * When true, run the decoys check: flag notes that were retrieved often (per\n     * the selection log) but NEVER cited in an answer. Surfaced for a human to\n     * judge — a decoy might be genuine noise OR a note the answers were wrong to\n     * skip; usage-feedback ranking (v1.5) never auto-down-ranks on this ambiguous\n     * signal (decision Q5). Opt-in; a no-op with no selection log.\n     */\n    checkDecoys?: boolean;\n    /**\n     * When true, run the secrets check (v1.5.3): flag notes that contain a secret\n     * (API key, token, password, private key — the redactor's precise set). Reports\n     * path, line and kind, never the value; nothing is rewritten. Opt-in, so the\n     * default report stays byte-stable. A real secret must be rotated: it is in\n     * git history if the note was ever committed.\n     */\n    checkSecrets?: boolean;\n  } = {}\n): Promise<LintReport> {\n  const schema = opts.schemaOverride ?? (await loadSchema(notesPath));\n  const files = await glob(opts.pathGlob ?? \"**/*.md\", {\n    cwd: notesPath,\n    ignore: [\"node_modules/**\", \".semantic-sidekick-index/**\", \"vault.schema.yml\"],\n  });\n\n  const findings: LintFinding[] = [];\n  // Build known-note set first, to make broken-link detection O(1) per link.\n  const knownNames = new Set<string>();\n  const rawByPath = new Map<string, string>();\n  for (const rel of files) {\n    try {\n      const raw = await readFile(join(notesPath, rel), \"utf-8\");\n      rawByPath.set(rel, raw);\n      // Wikilink names match on basename-without-ext (obsidian-style)\n      knownNames.add(basename(rel).replace(/\\.md$/, \"\"));\n    } catch {\n      /* skip */\n    }\n  }\n\n  // Code-symbol drift is opt-in and only meaningful against a real code repo.\n  const codeRoot = opts.checkCodeSymbols\n    ? resolveCodeRoot(opts.projectRoot ?? deriveProjectRoot(notesPath))\n    : null;\n\n  for (const [rel, raw] of rawByPath) {\n    findings.push(...validateNote(rel, raw, schema, { todayIso: opts.todayIso }));\n    findings.push(...findBrokenLinks(rel, raw, knownNames));\n    if (codeRoot) findings.push(...findCodeSymbolDrift(rel, raw, codeRoot));\n    if (opts.checkSecrets) {\n      for (const s of findSecrets(raw)) {\n        findings.push({\n          path: rel,\n          rule: \"secrets\",\n          severity: \"error\",\n          message: `line ${s.line}: ${s.kind} — rotate it if it is real, then remove it from the note (redaction does not rewrite git history)`,\n        });\n      }\n    }\n  }\n\n  if (opts.checkDecayCandidates) {\n    findings.push(...(await findDecayCandidates(notesPath, rawByPath, opts.todayIso)));\n  }\n\n  if (opts.checkAliasConflicts) {\n    for (const c of findAliasConflicts(await compileLexicon(notesPath))) {\n      findings.push({\n        path: \"lexicon\",\n        rule: \"alias_conflicts\",\n        severity: \"warn\",\n        message: `phrase \"${c.phrase}\" maps to ${c.canonicals.length} targets: ${c.canonicals.join(\", \")} — pick one`,\n      });\n    }\n  }\n\n  if (opts.checkDecoys) {\n    findings.push(...(await findDecoys(notesPath, rawByPath)));\n  }\n\n  const byRule = {\n    schema_violations: findings.filter((f) => f.rule === \"schema_violations\"),\n    missing_provenance: findings.filter((f) => f.rule === \"missing_provenance\"),\n    stale: findings.filter((f) => f.rule === \"stale\"),\n    broken_links: findings.filter((f) => f.rule === \"broken_links\"),\n    code_symbols: findings.filter((f) => f.rule === \"code_symbols\"),\n    decay_candidates: findings.filter((f) => f.rule === \"decay_candidates\"),\n    alias_conflicts: findings.filter((f) => f.rule === \"alias_conflicts\"),\n    decoys: findings.filter((f) => f.rule === \"decoys\"),\n    ...(opts.checkSecrets ? { secrets: findings.filter((f) => f.rule === \"secrets\") } : {}),\n  };\n  const errors = findings.filter((f) => f.severity === \"error\").length;\n  const warnings = findings.filter((f) => f.severity === \"warn\").length;\n\n  return {\n    schemaPath: join(notesPath, \"vault.schema.yml\"),\n    findings,\n    byRule,\n    counts: { errors, warnings, filesLinted: files.length },\n  };\n}\n\nfunction findBrokenLinks(\n  relPath: string,\n  rawFileContent: string,\n  knownNames: Set<string>\n): LintFinding[] {\n  const { content } = matter(rawFileContent);\n  const findings: LintFinding[] = [];\n  // Match [[target]] and [[target|alias]] — skip fenced code and inline code.\n  const stripped = content\n    .replace(/```[\\s\\S]*?```/g, \"\")\n    .replace(/`[^`]+`/g, \"\");\n  const re = /\\[\\[([^\\]\\|]+)(?:\\|[^\\]]+)?\\]\\]/g;\n  const seen = new Set<string>();\n  let m: RegExpExecArray | null;\n  while ((m = re.exec(stripped)) !== null) {\n    const target = m[1].trim().split(\"#\")[0].split(\"/\").pop()!.replace(/\\.md$/, \"\");\n    if (seen.has(target)) continue;\n    seen.add(target);\n    if (!knownNames.has(target)) {\n      findings.push({\n        path: relPath,\n        rule: \"broken_links\",\n        severity: \"warn\",\n        message: `wikilink [[${target}]] has no matching note`,\n      });\n    }\n  }\n  return findings;\n}\n\n/** File extensions we treat as \"this looks like a source/doc file reference\". */\nconst CODE_EXTENSIONS = new Set([\n  \"ts\", \"tsx\", \"js\", \"jsx\", \"mjs\", \"cjs\", \"py\", \"rb\", \"go\", \"rs\", \"java\", \"kt\",\n  \"c\", \"h\", \"cpp\", \"hpp\", \"cs\", \"php\", \"swift\", \"scala\", \"sh\", \"bash\", \"sql\",\n  \"json\", \"yaml\", \"yml\", \"toml\", \"css\", \"scss\", \"html\", \"vue\", \"svelte\", \"md\",\n]);\n\n/**\n * Decide whether `root` is a real code repository worth checking paths against.\n * Fails open (returns null) for non-code roots so the check is a silent no-op\n * outside a project — e.g. a standalone vault, or when babel-fish isn't present.\n */\nfunction resolveCodeRoot(root: string): string | null {\n  if (!root || !existsSync(root)) return null;\n  const markers = [\"package.json\", \".git\", \"src\", \"lib\", \"pyproject.toml\", \"go.mod\", \"Cargo.toml\"];\n  return markers.some((m) => existsSync(join(root, m))) ? root : null;\n}\n\n/**\n * Code-symbol drift: scan a note's inline-code spans for repo-relative file-path\n * references and flag ones whose first path segment IS a real directory in the repo\n * but whose full path no longer exists — i.e. a stale reference to a moved/deleted\n * file. Anchoring on an existing first segment keeps false positives low: paths\n * belonging to other repos (whose top-level dir isn't present here) are skipped.\n *\n * Scope note: this validates *path* references. Fine-grained symbol-name checking\n * (function/class identifiers) needs a real symbol index and is planned for the\n * v1.4 lexicon arc, which will extend this same `code_symbols` rule.\n */\nfunction findCodeSymbolDrift(relPath: string, rawFileContent: string, codeRoot: string): LintFinding[] {\n  const { content } = matter(rawFileContent);\n  // Inline-code spans only (single backtick). Fenced blocks are illustrative and\n  // over-match. Strip fenced blocks first so their backticks don't confuse the span regex.\n  const withoutFences = content.replace(/```[\\s\\S]*?```/g, \"\");\n  const findings: LintFinding[] = [];\n  const seen = new Set<string>();\n  const re = /`([^`\\n]+)`/g;\n  let m: RegExpExecArray | null;\n  while ((m = re.exec(withoutFences)) !== null) {\n    let token = m[1].trim();\n    if (!looksLikeRepoPath(token)) continue;\n    token = token.replace(/^\\.\\//, \"\");\n    if (seen.has(token)) continue;\n    seen.add(token);\n    const firstSeg = token.split(\"/\")[0];\n    // Only judge paths anchored in a directory that actually exists in this repo.\n    if (!existsSync(join(codeRoot, firstSeg))) continue;\n    if (!existsSync(join(codeRoot, token))) {\n      findings.push({\n        path: relPath,\n        rule: \"code_symbols\",\n        severity: \"warn\",\n        message: `inline code path \\`${token}\\` does not exist under the project root (stale reference?)`,\n      });\n    }\n  }\n  return findings;\n}\n\nfunction looksLikeRepoPath(token: string): boolean {\n  if (!token.includes(\"/\")) return false;\n  if (/\\s/.test(token)) return false; // commands, prose\n  if (token.includes(\"://\")) return false; // URLs\n  if (/[*?\\[\\]{}()<>|]/.test(token)) return false; // globs / shell / placeholders\n  if (token.startsWith(\"/\") || token.startsWith(\"~\")) return false; // absolute / home\n  const normalized = token.replace(/^\\.\\//, \"\");\n  if (normalized.startsWith(\"..\")) return false; // escapes the repo\n  const last = normalized.split(\"/\").pop() ?? \"\";\n  const dot = last.lastIndexOf(\".\");\n  if (dot <= 0) return false; // no extension → likely a dir or a symbol like a/b\n  const ext = last.slice(dot + 1).toLowerCase();\n  return CODE_EXTENSIONS.has(ext);\n}\n\n/** Multiplier at or below which a frequently-retrieved note is worth surfacing. */\nconst DECAY_CANDIDATE_THRESHOLD = 0.5;\n\n/**\n * Decay-candidates: notes that keep showing up in search results but have decayed.\n * Reads the selection log (search events record the paths each query returned),\n * computes each retrieved note's current decay multiplier from its frontmatter,\n * and flags those at/below the threshold — \"this keeps being relevant but is\n * going stale; verify or revise.\" Index-free (no embedder); a no-op when there's\n * no selection log yet.\n */\nasync function findDecayCandidates(\n  notesPath: string,\n  rawByPath: Map<string, string>,\n  todayIso?: string\n): Promise<LintFinding[]> {\n  const events = await readSelectionLog(notesPath);\n  if (events.length === 0) return [];\n\n  // Count how often each path was retrieved (appeared in a search's results).\n  const retrieved = new Map<string, number>();\n  for (const e of events) {\n    if (e.kind === \"search\") {\n      for (const r of e.results) retrieved.set(r.path, (retrieved.get(r.path) ?? 0) + 1);\n    }\n  }\n  if (retrieved.size === 0) return [];\n\n  const config = loadDecayConfig(notesPath);\n  if (!config.enabled) return [];\n  const nowMs = todayIso ? Date.parse(todayIso) : undefined;\n\n  const findings: LintFinding[] = [];\n  for (const [rel, count] of retrieved) {\n    const raw = rawByPath.get(rel);\n    if (!raw) continue; // retrieved path no longer in the vault — skip\n    const { data: fm } = matter(raw);\n    const decay = computeDecay({\n      type: typeof fm.type === \"string\" ? fm.type : undefined,\n      last_verified: normalizeVerifiedDate(fm.last_verified),\n      evergreen: fm.evergreen === true,\n      config,\n      nowMs,\n    });\n    if (decay.multiplier <= DECAY_CANDIDATE_THRESHOLD) {\n      findings.push({\n        path: rel,\n        rule: \"decay_candidates\",\n        severity: \"warn\",\n        message: `retrieved ${count}× recently but decayed to ${decay.multiplier.toFixed(2)} (age ${Math.round(decay.age_days)}d) — verify_note or revise`,\n      });\n    }\n  }\n  // Most-retrieved first — the ones worth re-verifying soonest.\n  findings.sort((a, b) => (retrieved.get(b.path) ?? 0) - (retrieved.get(a.path) ?? 0));\n  return findings;\n}\n\n/** A note must be retrieved at least this many times before \"never cited\" is signal. */\nconst DECOY_MIN_RETRIEVALS = 3;\n\n/**\n * Decoys (v1.5 Phase 9): notes retrieved ≥ DECOY_MIN_RETRIEVALS times that were\n * NEVER cited. Surfaced only — usage-feedback ranking never auto-down-ranks on\n * this ambiguous signal (a decoy might be genuine noise, or a note the answers\n * were wrong to skip). A human decides; the lint just points.\n */\nasync function findDecoys(notesPath: string, rawByPath: Map<string, string>): Promise<LintFinding[]> {\n  const events = await readSelectionLog(notesPath);\n  if (events.length === 0) return [];\n\n  const retrieved = new Map<string, number>();\n  const cited = new Set<string>();\n  for (const e of events) {\n    if (e.kind === \"search\") {\n      for (const r of e.results) retrieved.set(r.path, (retrieved.get(r.path) ?? 0) + 1);\n    } else if (e.kind === \"selection\") {\n      cited.add(e.note_path);\n    }\n  }\n\n  const findings: LintFinding[] = [];\n  for (const [rel, count] of retrieved) {\n    if (count < DECOY_MIN_RETRIEVALS) continue;\n    if (cited.has(rel)) continue;\n    if (!rawByPath.has(rel)) continue; // retrieved path no longer in the vault — skip\n    findings.push({\n      path: rel,\n      rule: \"decoys\",\n      severity: \"warn\",\n      message: `retrieved ${count}× but never cited — decoy noise, or a note answers wrongly skip? (surfaced, not auto-down-ranked)`,\n    });\n  }\n  findings.sort((a, b) => (retrieved.get(b.path) ?? 0) - (retrieved.get(a.path) ?? 0));\n  return findings;\n}\n\nexport function formatLintReport(report: LintReport, opts: { rule?: keyof LintReport[\"byRule\"] } = {}): string {\n  const target = (opts.rule ? report.byRule[opts.rule] : report.findings) ?? [];\n  if (target.length === 0) {\n    return `clean: 0 findings across ${report.counts.filesLinted} files`;\n  }\n  const lines = [\n    `${target.length} finding${target.length === 1 ? \"\" : \"s\"} (errors=${report.counts.errors}, warnings=${report.counts.warnings}, files=${report.counts.filesLinted})`,\n    \"\",\n  ];\n  for (const f of target) {\n    lines.push(`[${f.severity}] ${f.rule}: ${f.path} — ${f.message}`);\n  }\n  return 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package/dist/{chunk-JWPR2B2X.js → chunk-ROKSUJFM.js}

@@ -1,7 +1,11 @@
+import {
+  redact,
+  redactDeep
+} from "./chunk-OEF5U5GV.js";
 import {
   loadSchema,
   validateNote
-} from "./chunk-OWZWMB4P.js";
+} from "./chunk-FURCIJBO.js";
 
 // src/core/crud.ts
 import { readFile, writeFile, unlink, rename, mkdir } from "fs/promises";
@@ -20,11 +24,13 @@ var NoteCrud = class {
       throw new Error(`Note already exists: ${relativePath}`);
     }
     await mkdir(dirname(absPath), { recursive: true });
-    const stamps = computeStamps(content);
-    const merged = { ...stamps, ...frontmatter ?? {} };
-    const fileContent = matter.stringify(content, merged);
+    const body = redact(content);
+    const fm = redactDeep(frontmatter ?? {}, "precise");
+    const stamps = computeStamps(body.text);
+    const merged = { ...stamps, ...fm.value };
+    const fileContent = matter.stringify(body.text, merged);
     await writeFile(absPath, fileContent, "utf-8");
-    return relativePath;
+    return { path: relativePath, redacted: body.count + fm.count };
   }
   async read(relativePath) {
     const absPath = join(this.notesPath, relativePath);
@@ -50,6 +56,8 @@ var NoteCrud = class {
       throw new Error(`Note does not exist: ${relativePath}`);
     }
     const existing = await readFile(absPath, "utf-8");
+    const incoming = redact(content);
+    content = incoming.text;
     let updated;
     switch (options.mode) {
       case "overwrite":
@@ -74,6 +82,7 @@ var NoteCrud = class {
     const stamps = computeStamps(body);
     const newFm = { ...existingFm, ...stamps };
     await writeFile(absPath, matter.stringify(body, newFm), "utf-8");
+    return { path: relativePath, redacted: incoming.count };
   }
   async delete(relativePath) {
     const absPath = join(this.notesPath, relativePath);
@@ -172,7 +181,8 @@ var FrontmatterManager = class {
     const absPath = join2(this.notesPath, relativePath);
     const raw = await readFile2(absPath, "utf-8");
     const { data, content } = matter2(raw);
-    for (const [key, value] of Object.entries(fields)) {
+    const incoming = redactDeep(fields, "precise");
+    for (const [key, value] of Object.entries(incoming.value)) {
       if (value === null || value === void 0) {
         delete data[key];
       } else {
@@ -181,6 +191,7 @@ var FrontmatterManager = class {
     }
     const updated = matter2.stringify(content, data);
     await writeFile2(absPath, updated, "utf-8");
+    return { redacted: incoming.count };
   }
 };
 var TagManager = class {
@@ -560,16 +571,16 @@ async function applyPatch(notesPath, changeset, options = {}) {
   try {
     for (const c of changeset.creates ?? []) {
       const abs = join4(notesPath, c.path);
-      await crud.create(c.path, c.content, c.frontmatter);
+      const { redacted } = await crud.create(c.path, c.content, c.frontmatter);
       snapshots.push({ op: "create", path: c.path, absPath: abs });
-      applied.push({ op: "create", path: c.path });
+      applied.push({ op: "create", path: c.path, ...redacted ? { redacted } : {} });
     }
     for (const u of changeset.updates ?? []) {
       const abs = join4(notesPath, u.path);
       const prev = await readFile4(abs, "utf-8");
-      await crud.update(u.path, u.content, { mode: u.mode, heading: u.heading });
+      const { redacted } = await crud.update(u.path, u.content, { mode: u.mode, heading: u.heading });
       snapshots.push({ op: "update", path: u.path, absPath: abs, prevContent: prev });
-      applied.push({ op: "update", path: u.path });
+      applied.push({ op: "update", path: u.path, ...redacted ? { redacted } : {} });
     }
     for (const m of changeset.moves ?? []) {
       await crud.move(m.from, m.to);
@@ -933,4 +944,4 @@ export {
   regenerateAgentsContract,
   inspectAgentsContract
 };
-//# sourceMappingURL=chunk-JWPR2B2X.js.map
+//# sourceMappingURL=chunk-ROKSUJFM.js.map

package/dist/chunk-ROKSUJFM.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/core/crud.ts","../src/core/frontmatter.ts","../src/core/watcher.ts","../src/core/ingest.ts","../src/core/index-regen.ts","../src/core/patch.ts","../src/core/synthesize.ts","../src/core/agents-contract.ts"],"sourcesContent":["import { readFile, writeFile, unlink, rename, mkdir } from \"node:fs/promises\";\nimport { dirname, join, relative } from \"node:path\";\nimport { existsSync } from \"node:fs\";\nimport { glob } from \"glob\";\nimport matter from \"gray-matter\";\nimport type { UpdateNoteOptions } from \"./types.js\";\nimport { redact, redactDeep } from \"./redact.js\";\n\n/** `redacted`: secrets masked in the content written (never the values). */\nexport interface NoteWriteResult {\n  path: string;\n  redacted: number;\n}\n\nexport class NoteCrud {\n  private notesPath: string;\n\n  constructor(notesPath: string) {\n    this.notesPath = notesPath;\n  }\n\n  async create(\n    relativePath: string,\n    content: string,\n    frontmatter?: Record<string, unknown>\n  ): Promise<NoteWriteResult> {\n    const absPath = join(this.notesPath, relativePath);\n    if (existsSync(absPath)) {\n      throw new Error(`Note already exists: ${relativePath}`);\n    }\n\n    await mkdir(dirname(absPath), { recursive: true });\n\n    const body = redact(content);\n    const fm = redactDeep(frontmatter ?? {}, \"precise\");\n    // Merge auto-stamps with caller-supplied frontmatter (caller wins on conflicts)\n    const stamps = computeStamps(body.text);\n    const merged = { ...stamps, ...fm.value };\n    const fileContent = matter.stringify(body.text, merged);\n\n    await writeFile(absPath, fileContent, \"utf-8\");\n    return { path: relativePath, redacted: body.count + fm.count };\n  }\n\n  async read(relativePath: string): Promise<string> {\n    const absPath = join(this.notesPath, relativePath);\n    return readFile(absPath, \"utf-8\");\n  }\n\n  async readMultiple(paths: string[]): Promise<Map<string, string>> {\n    const results = new Map<string, string>();\n    await Promise.all(\n      paths.map(async (p) => {\n        try {\n          const content = await this.read(p);\n          results.set(p, content);\n        } catch {\n          results.set(p, `[Error: could not read ${p}]`);\n        }\n      })\n    );\n    return results;\n  }\n\n  async update(\n    relativePath: string,\n    content: string,\n    options: UpdateNoteOptions\n  ): Promise<NoteWriteResult> {\n    const absPath = join(this.notesPath, relativePath);\n    if (!existsSync(absPath)) {\n      throw new Error(`Note does not exist: ${relativePath}`);\n    }\n\n    const existing = await readFile(absPath, \"utf-8\");\n    // only the incoming text is redacted; secrets already in the note are lint_vault's to report\n    const incoming = redact(content);\n    content = incoming.text;\n\n    let updated: string;\n\n    switch (options.mode) {\n      case \"overwrite\":\n        updated = content;\n        break;\n\n      case \"append\":\n        updated = existing + \"\\n\" + content;\n        break;\n\n      case \"prepend\": {\n        const { data, content: body } = matter(existing);\n        const newBody = content + \"\\n\" + body;\n        updated = Object.keys(data).length > 0 ? matter.stringify(newBody, data) : newBody;\n        break;\n      }\n\n      case \"patch-by-heading\": {\n        if (!options.heading) throw new Error(\"patch-by-heading requires a heading\");\n        updated = this.patchByHeading(existing, options.heading, content);\n        break;\n      }\n    }\n\n    // Re-parse the final content and inject updated stamps\n    // (preserves all existing frontmatter, only overwrites the three auto fields)\n    const { data: existingFm, content: body } = matter(updated);\n    const stamps = computeStamps(body);\n    const newFm = { ...existingFm, ...stamps };\n    await writeFile(absPath, matter.stringify(body, newFm), \"utf-8\");\n    return { path: relativePath, redacted: incoming.count };\n  }\n\n  async delete(relativePath: string): Promise<void> {\n    const absPath = join(this.notesPath, relativePath);\n    if (!existsSync(absPath)) {\n      throw new Error(`Note does not exist: ${relativePath}`);\n    }\n    await unlink(absPath);\n  }\n\n  async move(fromPath: string, toPath: string): Promise<void> {\n    const absFrom = join(this.notesPath, fromPath);\n    const absTo = join(this.notesPath, toPath);\n\n    if (!existsSync(absFrom)) {\n      throw new Error(`Note does not exist: ${fromPath}`);\n    }\n    if (existsSync(absTo)) {\n      throw new Error(`Destination already exists: ${toPath}`);\n    }\n\n    await mkdir(dirname(absTo), { recursive: true });\n    await rename(absFrom, absTo);\n\n    // Update wikilinks in other files that reference the old path\n    await this.updateWikilinksAfterMove(fromPath, toPath);\n  }\n\n  private async updateWikilinksAfterMove(\n    oldPath: string,\n    newPath: string\n  ): Promise<void> {\n    const oldName = oldPath.replace(/\\.md$/, \"\").split(\"/\").pop()!;\n    const newName = newPath.replace(/\\.md$/, \"\").split(\"/\").pop()!;\n\n    if (oldName === newName) return;\n\n    const files = await glob(\"**/*.md\", { cwd: this.notesPath });\n\n    for (const file of files) {\n      const absPath = join(this.notesPath, file);\n      const content = await readFile(absPath, \"utf-8\");\n\n      const pattern = new RegExp(`\\\\[\\\\[${escapeRegex(oldName)}(\\\\|[^\\\\]]*)?\\\\]\\\\]`, \"g\");\n      if (!pattern.test(content)) continue;\n\n      const updated = content.replace(pattern, `[[${newName}$1]]`);\n      await writeFile(absPath, updated, \"utf-8\");\n    }\n  }\n\n  private patchByHeading(\n    content: string,\n    heading: string,\n    newContent: string\n  ): string {\n    const lines = content.split(\"\\n\");\n    const headingPattern = new RegExp(`^#{1,6}\\\\s+${escapeRegex(heading)}\\\\s*$`, \"i\");\n\n    let headingIndex = -1;\n    let headingLevel = 0;\n\n    for (let i = 0; i < lines.length; i++) {\n      if (headingPattern.test(lines[i])) {\n        headingIndex = i;\n        const match = lines[i].match(/^(#{1,6})\\s+/);\n        headingLevel = match ? match[1].length : 1;\n        break;\n      }\n    }\n\n    if (headingIndex === -1) {\n      throw new Error(`Heading not found: ${heading}`);\n    }\n\n    // Find the end of this section (next heading of same or higher level)\n    let endIndex = lines.length;\n    for (let i = headingIndex + 1; i < lines.length; i++) {\n      const match = lines[i].match(/^(#{1,6})\\s+/);\n      if (match && match[1].length <= headingLevel) {\n        endIndex = i;\n        break;\n      }\n    }\n\n    const before = lines.slice(0, headingIndex + 1);\n    const after = lines.slice(endIndex);\n\n    return [...before, \"\", newContent, \"\", ...after].join(\"\\n\");\n  }\n}\n\nfunction escapeRegex(str: string): string {\n  return str.replace(/[.*+?^${}()|[\\]\\\\]/g, \"\\\\$&\");\n}\n\n/**\n * Compute the three auto-stamp fields from note body text.\n * These are always factual/computable — no editorial judgment required.\n * - last_updated: today's date (YYYY-MM-DD)\n * - word_count: whitespace-separated token count\n * - estimated_read_time: assumes ~200 wpm average reading speed\n */\nfunction computeStamps(body: string): Record<string, unknown> {\n  const today = new Date().toISOString().slice(0, 10); // YYYY-MM-DD\n  const wordCount = body.trim() ? body.trim().split(/\\s+/).length : 0;\n  const minutes = Math.max(1, Math.ceil(wordCount / 200));\n  return {\n    last_updated: today,\n    word_count: wordCount,\n    estimated_read_time: `${minutes} min read`,\n  };\n}\n","import { readFile, writeFile } from \"node:fs/promises\";\nimport { join } from \"node:path\";\nimport { glob } from \"glob\";\nimport matter from \"gray-matter\";\nimport { redactDeep } from \"./redact.js\";\n\nexport class FrontmatterManager {\n  private notesPath: string;\n\n  constructor(notesPath: string) {\n    this.notesPath = notesPath;\n  }\n\n  async get(relativePath: string): Promise<Record<string, unknown>> {\n    const absPath = join(this.notesPath, relativePath);\n    const raw = await readFile(absPath, \"utf-8\");\n    const { data } = matter(raw);\n    return data;\n  }\n\n  async update(\n    relativePath: string,\n    fields: Record<string, unknown>\n  ): Promise<{ redacted: number }> {\n    const absPath = join(this.notesPath, relativePath);\n    const raw = await readFile(absPath, \"utf-8\");\n    const { data, content } = matter(raw);\n    const incoming = redactDeep(fields, \"precise\");\n\n    for (const [key, value] of Object.entries(incoming.value)) {\n      if (value === null || value === undefined) {\n        delete data[key];\n      } else {\n        data[key] = value;\n      }\n    }\n\n    const updated = matter.stringify(content, data);\n    await writeFile(absPath, updated, \"utf-8\");\n    return { redacted: incoming.count };\n  }\n}\n\nexport class TagManager {\n  private notesPath: string;\n\n  constructor(notesPath: string) {\n    this.notesPath = notesPath;\n  }\n\n  async list(relativePath: string): Promise<string[]> {\n    const absPath = join(this.notesPath, relativePath);\n    const raw = await readFile(absPath, \"utf-8\");\n    const { data, content } = matter(raw);\n\n    const fmTags = Array.isArray(data.tags) ? (data.tags as string[]) : [];\n    const inlineTags = [...content.matchAll(/(?:^|\\s)#([a-zA-Z][\\w-/]*)/g)].map(\n      (m) => m[1]\n    );\n\n    return [...new Set([...fmTags, ...inlineTags])];\n  }\n\n  async add(relativePath: string, tags: string[]): Promise<void> {\n    const absPath = join(this.notesPath, relativePath);\n    const raw = await readFile(absPath, \"utf-8\");\n    const { data, content } = matter(raw);\n\n    const existing = Array.isArray(data.tags) ? (data.tags as string[]) : [];\n    const merged = [...new Set([...existing, ...tags])];\n    data.tags = merged;\n\n    const updated = matter.stringify(content, data);\n    await writeFile(absPath, updated, \"utf-8\");\n  }\n\n  async remove(relativePath: string, tags: string[]): Promise<void> {\n    const absPath = join(this.notesPath, relativePath);\n    const raw = await readFile(absPath, \"utf-8\");\n    const { data, content } = matter(raw);\n\n    // Remove from frontmatter\n    if (Array.isArray(data.tags)) {\n      data.tags = (data.tags as string[]).filter((t) => !tags.includes(t));\n    }\n\n    // Remove inline tags\n    let updatedContent = content;\n    for (const tag of tags) {\n      const pattern = new RegExp(`(^|\\\\s)#${escapeRegex(tag)}(?=\\\\s|$)`, \"g\");\n      updatedContent = updatedContent.replace(pattern, \"$1\");\n    }\n\n    const updated = matter.stringify(updatedContent, data);\n    await writeFile(absPath, updated, \"utf-8\");\n  }\n\n  async renameVaultWide(oldTag: string, newTag: string): Promise<number> {\n    const files = await glob(\"**/*.md\", { cwd: this.notesPath });\n    let count = 0;\n\n    for (const file of files) {\n      const absPath = join(this.notesPath, file);\n      const raw = await readFile(absPath, \"utf-8\");\n      const { data, content } = matter(raw);\n      let changed = false;\n\n      // Rename in frontmatter\n      if (Array.isArray(data.tags)) {\n        const idx = (data.tags as string[]).indexOf(oldTag);\n        if (idx >= 0) {\n          (data.tags as string[])[idx] = newTag;\n          changed = true;\n        }\n      }\n\n      // Rename inline tags\n      const pattern = new RegExp(`(^|\\\\s)#${escapeRegex(oldTag)}(?=\\\\s|$)`, \"g\");\n      const updatedContent = content.replace(pattern, `$1#${newTag}`);\n      if (updatedContent !== content) changed = true;\n\n      if (changed) {\n        const updated = matter.stringify(updatedContent, data);\n        await writeFile(absPath, updated, \"utf-8\");\n        count++;\n      }\n    }\n\n    return count;\n  }\n}\n\nfunction escapeRegex(str: string): string {\n  return str.replace(/[.*+?^${}()|[\\]\\\\]/g, \"\\\\$&\");\n}\n","import { watch, type FSWatcher } from \"chokidar\";\nimport { EventEmitter } from \"node:events\";\n\nexport interface WatcherEvents {\n  changed: (paths: string[]) => void;\n  error: (error: Error) => void;\n}\n\nconst IGNORED_DIRS = /(^|[\\\\/])(node_modules|\\.semantic-sidekick-index|\\.git)([\\\\/]|$)/;\nconst isMarkdown = (path: string) => path.endsWith(\".md\");\n\nexport class Watcher extends EventEmitter {\n  private notesPath: string;\n  private fsWatcher: FSWatcher | null = null;\n  private debounceMs: number;\n  private pendingChanges = new Set<string>();\n  private debounceTimer: ReturnType<typeof setTimeout> | null = null;\n  private readyPromise: Promise<void> | null = null;\n  private usePolling: boolean;\n\n  constructor(notesPath: string, debounceMs: number = 500, usePolling: boolean = false) {\n    super();\n    this.notesPath = notesPath;\n    this.debounceMs = debounceMs;\n    this.usePolling = usePolling;\n  }\n\n  start(): void {\n    if (this.fsWatcher) return;\n\n    // chokidar ≥4 has no glob support: watch the folder and filter (a \"**/*.md\" target never fires)\n    this.fsWatcher = watch(\".\", {\n      cwd: this.notesPath,\n      ignoreInitial: true,\n      followSymlinks: true,\n      ignored: (path, stats) => IGNORED_DIRS.test(path) || (stats?.isFile() === true && !isMarkdown(path)),\n      ...(this.usePolling ? { usePolling: true, interval: 100 } : {}),\n    });\n\n    this.readyPromise = new Promise<void>((resolve) => {\n      this.fsWatcher!.on(\"ready\", resolve);\n    });\n\n    this.fsWatcher.on(\"add\", (path) => this.enqueue(path));\n    this.fsWatcher.on(\"change\", (path) => this.enqueue(path));\n    this.fsWatcher.on(\"unlink\", (path) => this.enqueue(path));\n    this.fsWatcher.on(\"error\", (err) => this.emit(\"error\", err));\n  }\n\n  async ready(): Promise<void> {\n    if (this.readyPromise) await this.readyPromise;\n  }\n\n  stop(): void {\n    if (this.debounceTimer) clearTimeout(this.debounceTimer);\n    this.fsWatcher?.close();\n    this.fsWatcher = null;\n    this.pendingChanges.clear();\n  }\n\n  private enqueue(path: string): void {\n    // `ignored` gets no stats for some events (e.g. unlink), so non-markdown can reach here\n    if (!isMarkdown(path)) return;\n    this.pendingChanges.add(path);\n\n    if (this.debounceTimer) clearTimeout(this.debounceTimer);\n    this.debounceTimer = setTimeout(() => {\n      const paths = [...this.pendingChanges];\n      this.pendingChanges.clear();\n      this.emit(\"changed\", paths);\n    }, this.debounceMs);\n  }\n}\n","import { basename } from \"node:path\";\nimport type { ChangeSet, PatchCreate } from \"./patch.js\";\n\nexport interface IngestSource {\n  /** Identifier of the source — URL, filesystem path, DOI, ISBN, etc. */\n  source_uri: string;\n  /** Human-readable title for the source-note's frontmatter */\n  source_title: string;\n  /** One of the schema types; typically \"source\" */\n  source_type?: string;\n  /** Path under the vault to write the source-note. Defaults to `sources/<slug>.md`. */\n  source_path?: string;\n  /** Free-form body for the source-note (summary, abstract, your notes on it) */\n  source_summary?: string;\n  /** Tags for the source-note */\n  source_tags?: string[];\n}\n\nexport interface IngestUnit {\n  /** Path under the vault where this extracted note should live */\n  path: string;\n  /** Note title — if absent, derived from basename */\n  title?: string;\n  /** Note body — markdown */\n  content: string;\n  /** Schema type. Default: \"note\". */\n  type?: string;\n  /** Additional wikilink-style derived_from targets beyond the source-note */\n  extra_derived_from?: string[];\n  /** Additional free-form frontmatter fields */\n  extra_frontmatter?: Record<string, unknown>;\n  /** Per-unit confidence override */\n  confidence?: string;\n}\n\nexport interface IngestInput {\n  source: IngestSource;\n  units: IngestUnit[];\n  /** If true, the existing source-note is updated if present; else an error is raised */\n  allow_existing_source?: boolean;\n}\n\nexport interface IngestPreview {\n  changeset: ChangeSet;\n  sourcePath: string;\n  unitPaths: string[];\n}\n\n/**\n * Build a ChangeSet for ingesting a source into the vault.\n *\n * Shape: one create for the source-note (type=source) + one create per unit,\n * each stamped with `derived_from: [<source-path>]` so lint.missing_provenance\n * is satisfied automatically and the graph reflects the provenance edge.\n *\n * Intentionally does NOT touch the filesystem — callers route the result\n * through applyPatch for atomicity, validation, and rollback.\n */\nexport function buildIngestChangeSet(input: IngestInput): IngestPreview {\n  const today = new Date().toISOString().slice(0, 10);\n  const sourcePath = input.source.source_path ?? defaultSourcePath(input.source);\n\n  const sourceNote: PatchCreate = {\n    path: sourcePath,\n    content: buildSourceBody(input.source),\n    frontmatter: {\n      title: input.source.source_title,\n      type: input.source.source_type ?? \"source\",\n      status: \"active\",\n      source: input.source.source_uri,\n      last_verified: today,\n      confidence: \"high\",\n      ...(input.source.source_tags && input.source.source_tags.length > 0 && { tags: input.source.source_tags }),\n    },\n  };\n\n  const unitCreates: PatchCreate[] = input.units.map((u) => {\n    const title = u.title ?? titleFromPath(u.path);\n    const derivedFrom = [sourcePath, ...(u.extra_derived_from ?? [])];\n    return {\n      path: u.path.endsWith(\".md\") ? u.path : u.path + \".md\",\n      content: u.content.startsWith(\"#\") ? u.content : `# ${title}\\n\\n${u.content.trim()}\\n`,\n      frontmatter: {\n        title,\n        type: u.type ?? \"note\",\n        status: \"active\",\n        derived_from: derivedFrom,\n        last_verified: today,\n        confidence: u.confidence ?? \"medium\",\n        ...(u.extra_frontmatter ?? {}),\n      },\n    };\n  });\n\n  return {\n    changeset: { creates: [sourceNote, ...unitCreates] },\n    sourcePath,\n    unitPaths: unitCreates.map((c) => c.path),\n  };\n}\n\nfunction buildSourceBody(source: IngestSource): string {\n  const lines = [`# ${source.source_title}`, \"\", `**Source:** ${source.source_uri}`, \"\"];\n  if (source.source_summary) {\n    lines.push(source.source_summary.trim(), \"\");\n  } else {\n    lines.push(\"_Summary not provided — fill in when referencing this source._\", \"\");\n  }\n  return lines.join(\"\\n\");\n}\n\nfunction defaultSourcePath(source: IngestSource): string {\n  const slug = slugify(source.source_title);\n  return `sources/${slug}.md`;\n}\n\nfunction titleFromPath(p: string): string {\n  return basename(p).replace(/\\.md$/, \"\").replace(/[-_]/g, \" \");\n}\n\nfunction slugify(s: string): string {\n  return s\n    .toLowerCase()\n    .replace(/[^\\w\\s-]/g, \"\")\n    .replace(/\\s+/g, \"-\")\n    .replace(/-+/g, \"-\")\n    .replace(/^-|-$/g, \"\")\n    .slice(0, 80);\n}\n","import { readdir, readFile, writeFile, stat } from \"node:fs/promises\";\nimport { existsSync } from \"node:fs\";\nimport { join, dirname, basename, sep } from \"node:path\";\nimport matter from \"gray-matter\";\n\nexport const INDEX_FILE = \"INDEX.md\";\nexport const INDEX_OVERFLOW_THRESHOLD = 100; // entries before we warn about splitting\n\nexport interface IndexEntry {\n  path: string; // relative to the directory\n  title: string;\n  summary?: string;\n}\n\nexport interface RegenResult {\n  directory: string;\n  indexPath: string;\n  entryCount: number;\n  overflowed: boolean;\n  wrote: boolean;\n}\n\n/**\n * Regenerate INDEX.md for a single vault directory.\n * Lists every *.md file in the directory (non-recursive, excluding the index itself)\n * with its title (frontmatter or first heading) and optional summary (from frontmatter\n * `purpose` or first non-heading paragraph).\n */\nexport async function regenDirectoryIndex(vaultPath: string, dirRel: string): Promise<RegenResult> {\n  const absDir = join(vaultPath, dirRel);\n  const indexPath = join(absDir, INDEX_FILE);\n  const relIndex = join(dirRel, INDEX_FILE);\n\n  if (!existsSync(absDir)) {\n    return { directory: dirRel, indexPath: relIndex, entryCount: 0, overflowed: false, wrote: false };\n  }\n\n  const files = (await readdir(absDir)).filter(\n    (f) => f.endsWith(\".md\") && f !== INDEX_FILE && f !== \"README.md\"\n  );\n\n  const entries: IndexEntry[] = [];\n  for (const f of files) {\n    const full = join(absDir, f);\n    try {\n      const st = await stat(full);\n      if (!st.isFile()) continue;\n      const raw = await readFile(full, \"utf-8\");\n      const { data, content } = matter(raw);\n      const title = typeof data.title === \"string\" ? data.title : firstHeading(content) ?? basenameNoExt(f);\n      const summary = typeof data.purpose === \"string\" ? data.purpose : firstParagraph(content);\n      entries.push({ path: f, title, summary });\n    } catch {\n      /* skip unreadable */\n    }\n  }\n\n  entries.sort((a, b) => a.title.localeCompare(b.title));\n  const body = renderIndex(dirRel, entries);\n  const overflowed = entries.length > INDEX_OVERFLOW_THRESHOLD;\n\n  let wrote = false;\n  if (existsSync(indexPath)) {\n    const current = await readFile(indexPath, \"utf-8\");\n    if (current !== body) {\n      await writeFile(indexPath, body, \"utf-8\");\n      wrote = true;\n    }\n  } else {\n    await writeFile(indexPath, body, \"utf-8\");\n    wrote = true;\n  }\n\n  return { directory: dirRel, indexPath: relIndex, entryCount: entries.length, overflowed, wrote };\n}\n\n/**\n * Regenerate indexes for every directory affected by a set of paths.\n * Walks up the parent chain for each input so a deep change at\n * `a/b/c/note.md` regenerates `a/b/c/INDEX.md`. Does NOT recurse further —\n * `a/b/INDEX.md` stays as-is unless a path under `a/b/` (not `a/b/c/`)\n * also changed.\n */\nexport async function regenIndexesForPaths(\n  vaultPath: string,\n  paths: string[]\n): Promise<RegenResult[]> {\n  const dirs = new Set<string>();\n  for (const p of paths) {\n    const d = dirname(p);\n    if (d === \".\" || d === \"/\") continue;\n    dirs.add(d);\n  }\n  const results: RegenResult[] = [];\n  for (const d of dirs) {\n    results.push(await regenDirectoryIndex(vaultPath, d));\n  }\n  return results;\n}\n\nfunction renderIndex(dirRel: string, entries: IndexEntry[]): string {\n  const header = `# ${toTitle(dirRel)} Index\\n\\n> Auto-generated by semantic-sidekick. Changes are overwritten on apply_patch. Add prose to per-note files, not here.\\n\\n`;\n  if (entries.length === 0) return header + \"_No notes in this directory yet._\\n\";\n  const overflowNote =\n    entries.length > INDEX_OVERFLOW_THRESHOLD\n      ? `> ⚠️  ${entries.length} entries — consider splitting this directory into subfolders (threshold: ${INDEX_OVERFLOW_THRESHOLD}).\\n\\n`\n      : \"\";\n  const lines = entries.map((e) => {\n    const linkText = e.title;\n    const target = e.path.replace(/\\.md$/, \"\");\n    const summary = e.summary ? ` — ${truncate(e.summary, 140)}` : \"\";\n    return `- [${linkText}](./${e.path}) — \\`[[${target}]]\\`${summary}`;\n  });\n  return header + overflowNote + lines.join(\"\\n\") + \"\\n\";\n}\n\nfunction toTitle(dirRel: string): string {\n  return dirRel\n    .split(sep)\n    .pop()!\n    .replace(/[-_]/g, \" \")\n    .replace(/\\b\\w/g, (c) => c.toUpperCase());\n}\n\nfunction basenameNoExt(p: string): string {\n  return basename(p).replace(/\\.md$/, \"\");\n}\n\nfunction firstHeading(content: string): string | null {\n  const m = content.match(/^\\s*#{1,6}\\s+(.+)$/m);\n  return m ? m[1].trim() : null;\n}\n\nfunction firstParagraph(content: string): string | undefined {\n  // Skip leading headings, then take the first line of non-heading text\n  const lines = content.split(\"\\n\");\n  for (const line of lines) {\n    const trimmed = line.trim();\n    if (!trimmed) continue;\n    if (trimmed.startsWith(\"#\")) continue;\n    if (trimmed.startsWith(\">\")) continue;\n    if (trimmed.startsWith(\"```\")) continue;\n    return trimmed.replace(/\\s+/g, \" \");\n  }\n  return undefined;\n}\n\nfunction truncate(s: string, n: number): string {\n  return s.length <= n ? s : s.slice(0, n - 1).trimEnd() + \"…\";\n}\n","import { readFile, writeFile, unlink, rename, mkdir } from \"node:fs/promises\";\nimport { existsSync } from \"node:fs\";\nimport { dirname, join } from \"node:path\";\nimport matter from \"gray-matter\";\nimport type { UpdateNoteOptions } from \"./types.js\";\nimport { NoteCrud } from \"./crud.js\";\nimport { loadSchema, validateNote, type LintFinding, type VaultSchema } from \"./schema.js\";\nimport { regenIndexesForPaths, type RegenResult } from \"./index-regen.js\";\n\nexport interface PatchCreate {\n  path: string;\n  content: string;\n  frontmatter?: Record<string, unknown>;\n}\n\nexport interface PatchUpdate {\n  path: string;\n  content: string;\n  mode: UpdateNoteOptions[\"mode\"];\n  heading?: string;\n}\n\nexport interface PatchDelete {\n  path: string;\n}\n\nexport interface PatchMove {\n  from: string;\n  to: string;\n}\n\nexport interface ChangeSet {\n  creates?: PatchCreate[];\n  updates?: PatchUpdate[];\n  deletes?: PatchDelete[];\n  moves?: PatchMove[];\n}\n\nexport interface ApplyPatchOptions {\n  dryRun?: boolean;\n  validate?: boolean;\n  allowLintWarnings?: boolean;\n  /** Regenerate INDEX.md in directories touched by this patch. Default: true. */\n  regenIndexes?: boolean;\n}\n\nexport interface AppliedOp {\n  op: \"create\" | \"update\" | \"delete\" | \"move\";\n  path: string;\n  /** secrets masked in this op's content; omitted when none */\n  redacted?: number;\n}\n\nexport interface ApplyPatchResult {\n  ok: boolean;\n  applied: AppliedOp[];\n  rolledBack: AppliedOp[];\n  lint: LintFinding[];\n  errors: string[];\n  /** Index files regenerated as a side-effect. Empty if regenIndexes=false or dry-run. */\n  indexes_regenerated?: RegenResult[];\n}\n\ninterface Snapshot {\n  op: \"create\" | \"update\" | \"delete\" | \"move\";\n  path: string;\n  absPath: string;\n  prevContent?: string; // for update/delete/move(from)\n  prevAbsPath?: string; // for move (prev location)\n}\n\n/**\n * Atomic multi-note patch with rollback. Applies creates → updates → moves → deletes\n * in that order. If any op fails, all successful ops before it are reverted in reverse.\n *\n * In dry-run mode, nothing is written; the result describes what would have happened,\n * including lint findings on the proposed state.\n */\nexport async function applyPatch(\n  notesPath: string,\n  changeset: ChangeSet,\n  options: ApplyPatchOptions = {}\n): Promise<ApplyPatchResult> {\n  const validate = options.validate !== false;\n  const dryRun = options.dryRun === true;\n  const allowWarn = options.allowLintWarnings !== false;\n\n  const errors: string[] = [];\n  const lint: LintFinding[] = [];\n  const applied: AppliedOp[] = [];\n  const snapshots: Snapshot[] = [];\n\n  const crud = new NoteCrud(notesPath);\n\n  let schema: VaultSchema | null = null;\n  if (validate) {\n    try {\n      schema = await loadSchema(notesPath);\n    } catch (e) {\n      errors.push(`failed to load schema: ${e instanceof Error ? e.message : String(e)}`);\n      return { ok: false, applied, rolledBack: [], lint, errors };\n    }\n  }\n\n  // Pre-check: collisions on creates, missing sources on updates/deletes/moves.\n  for (const c of changeset.creates ?? []) {\n    if (existsSync(join(notesPath, c.path))) {\n      errors.push(`create: already exists: ${c.path}`);\n    }\n  }\n  for (const u of changeset.updates ?? []) {\n    if (!existsSync(join(notesPath, u.path))) {\n      errors.push(`update: does not exist: ${u.path}`);\n    }\n  }\n  for (const d of changeset.deletes ?? []) {\n    if (!existsSync(join(notesPath, d.path))) {\n      errors.push(`delete: does not exist: ${d.path}`);\n    }\n  }\n  for (const m of changeset.moves ?? []) {\n    if (!existsSync(join(notesPath, m.from))) {\n      errors.push(`move: source does not exist: ${m.from}`);\n    }\n    if (existsSync(join(notesPath, m.to))) {\n      errors.push(`move: destination exists: ${m.to}`);\n    }\n  }\n\n  if (errors.length > 0) {\n    return { ok: false, applied, rolledBack: [], lint, errors };\n  }\n\n  // Lint pre-flight on proposed state. Simulate each create/update and validate.\n  if (validate && schema) {\n    for (const c of changeset.creates ?? []) {\n      const proposed = matter.stringify(c.content, c.frontmatter ?? {});\n      lint.push(...validateNote(c.path, proposed, schema));\n    }\n    for (const u of changeset.updates ?? []) {\n      const abs = join(notesPath, u.path);\n      let proposed: string;\n      try {\n        const existing = await readFile(abs, \"utf-8\");\n        proposed = applyUpdateInMemory(existing, u);\n      } catch (e) {\n        errors.push(`update precheck: ${u.path}: ${e instanceof Error ? e.message : String(e)}`);\n        continue;\n      }\n      lint.push(...validateNote(u.path, proposed, schema));\n    }\n\n    const schemaErrors = lint.filter((f) => f.rule === \"schema_violations\" && f.severity === \"error\");\n    if (schemaErrors.length > 0) {\n      errors.push(`${schemaErrors.length} schema violation(s) blocked the patch`);\n    }\n    if (!allowWarn) {\n      const warns = lint.filter((f) => f.severity === \"warn\");\n      if (warns.length > 0) errors.push(`${warns.length} lint warning(s) blocked the patch (allowLintWarnings=false)`);\n    }\n  }\n\n  if (errors.length > 0 || dryRun) {\n    return { ok: errors.length === 0, applied, rolledBack: [], lint, errors };\n  }\n\n  // Execute — capture snapshots as we go so rollback can reverse.\n  try {\n    for (const c of changeset.creates ?? []) {\n      const abs = join(notesPath, c.path);\n      const { redacted } = await crud.create(c.path, c.content, c.frontmatter);\n      snapshots.push({ op: \"create\", path: c.path, absPath: abs });\n      applied.push({ op: \"create\", path: c.path, ...(redacted ? { redacted } : {}) });\n    }\n    for (const u of changeset.updates ?? []) {\n      const abs = join(notesPath, u.path);\n      const prev = await readFile(abs, \"utf-8\");\n      const { redacted } = await crud.update(u.path, u.content, { mode: u.mode, heading: u.heading } as UpdateNoteOptions);\n      snapshots.push({ op: \"update\", path: u.path, absPath: abs, prevContent: prev });\n      applied.push({ op: \"update\", path: u.path, ...(redacted ? { redacted } : {}) });\n    }\n    for (const m of changeset.moves ?? []) {\n      await crud.move(m.from, m.to);\n      snapshots.push({\n        op: \"move\",\n        path: m.to,\n        absPath: join(notesPath, m.to),\n        prevAbsPath: join(notesPath, m.from),\n      });\n      applied.push({ op: \"move\", path: `${m.from} -> ${m.to}` });\n    }\n    for (const d of changeset.deletes ?? []) {\n      const abs = join(notesPath, d.path);\n      const prev = await readFile(abs, \"utf-8\");\n      await crud.delete(d.path);\n      snapshots.push({ op: \"delete\", path: d.path, absPath: abs, prevContent: prev });\n      applied.push({ op: \"delete\", path: d.path });\n    }\n  } catch (e) {\n    errors.push(`op failed: ${e instanceof Error ? e.message : String(e)} — rolling back`);\n    const rolledBack = await rollback(snapshots);\n    return { ok: false, applied, rolledBack, lint, errors };\n  }\n\n  let indexes_regenerated: RegenResult[] = [];\n  if (options.regenIndexes !== false) {\n    const touched = [\n      ...(changeset.creates ?? []).map((c) => c.path),\n      ...(changeset.deletes ?? []).map((d) => d.path),\n      ...(changeset.moves ?? []).flatMap((m) => [m.from, m.to]),\n    ];\n    try {\n      indexes_regenerated = await regenIndexesForPaths(notesPath, touched);\n    } catch (e) {\n      // Non-fatal: patch succeeded; index regen is a best-effort side effect.\n      errors.push(`index regen failed (patch still applied): ${e instanceof Error ? e.message : String(e)}`);\n    }\n  }\n\n  return { ok: true, applied, rolledBack: [], lint, errors, indexes_regenerated };\n}\n\nasync function rollback(snapshots: Snapshot[]): Promise<AppliedOp[]> {\n  const reverted: AppliedOp[] = [];\n  for (const s of snapshots.slice().reverse()) {\n    try {\n      switch (s.op) {\n        case \"create\":\n          if (existsSync(s.absPath)) await unlink(s.absPath);\n          reverted.push({ op: \"create\", path: s.path });\n          break;\n        case \"update\":\n          if (s.prevContent !== undefined) {\n            await writeFile(s.absPath, s.prevContent, \"utf-8\");\n          }\n          reverted.push({ op: \"update\", path: s.path });\n          break;\n        case \"delete\":\n          if (s.prevContent !== undefined) {\n            await mkdir(dirname(s.absPath), { recursive: true });\n            await writeFile(s.absPath, s.prevContent, \"utf-8\");\n          }\n          reverted.push({ op: \"delete\", path: s.path });\n          break;\n        case \"move\":\n          if (s.prevAbsPath && existsSync(s.absPath)) {\n            await mkdir(dirname(s.prevAbsPath), { recursive: true });\n            await rename(s.absPath, s.prevAbsPath);\n          }\n          reverted.push({ op: \"move\", path: s.path });\n          break;\n      }\n    } catch {\n      // swallow — best-effort rollback\n    }\n  }\n  return reverted;\n}\n\nfunction applyUpdateInMemory(existing: string, u: PatchUpdate): string {\n  switch (u.mode) {\n    case \"overwrite\":\n      return u.content;\n    case \"append\":\n      return existing + \"\\n\" + u.content;\n    case \"prepend\": {\n      const { data, content: body } = matter(existing);\n      const newBody = u.content + \"\\n\" + body;\n      return Object.keys(data).length > 0 ? matter.stringify(newBody, data) : newBody;\n    }\n    case \"patch-by-heading\": {\n      if (!u.heading) throw new Error(\"patch-by-heading requires heading\");\n      return patchByHeadingInMemory(existing, u.heading, u.content);\n    }\n  }\n}\n\nfunction patchByHeadingInMemory(content: string, heading: string, newContent: string): string {\n  const lines = content.split(\"\\n\");\n  const re = new RegExp(`^#{1,6}\\\\s+${heading.replace(/[.*+?^${}()|[\\]\\\\]/g, \"\\\\$&\")}\\\\s*$`, \"i\");\n  let idx = -1;\n  let level = 0;\n  for (let i = 0; i < lines.length; i++) {\n    if (re.test(lines[i])) {\n      idx = i;\n      const m = lines[i].match(/^(#{1,6})\\s+/);\n      level = m ? m[1].length : 1;\n      break;\n    }\n  }\n  if (idx === -1) throw new Error(`Heading not found: ${heading}`);\n  let end = lines.length;\n  for (let i = idx + 1; i < lines.length; i++) {\n    const m = lines[i].match(/^(#{1,6})\\s+/);\n    if (m && m[1].length <= level) {\n      end = i;\n      break;\n    }\n  }\n  return [...lines.slice(0, idx + 1), \"\", newContent, \"\", ...lines.slice(end)].join(\"\\n\");\n}\n","import { basename } from \"node:path\";\nimport type { ChangeSet, PatchCreate, PatchUpdate } from \"./patch.js\";\n\nexport interface SynthesizeNoteInput {\n  topic: string;\n  answer: string;\n  suggested_path: string;\n  type?: string;\n  sources?: string[];\n  derived_from?: string[];\n  related_notes?: string[];\n  status?: string;\n  confidence?: string;\n  decision_maker?: string;\n  decided_on?: string;\n  severity?: string;\n  /** Verbatim symptom phrases (the user's own words) — symptom-keyed for retrieval. */\n  symptoms?: string[];\n  extra_frontmatter?: Record<string, unknown>;\n  /**\n   * When true, the resulting note is filed under `proposals/<date>-<slug>.md` with\n   * `status: proposal` frontmatter, regardless of `suggested_path`. The original path\n   * is preserved as `proposed_target` in frontmatter so `synthesize_promote` knows\n   * where to move it on acceptance.\n   */\n  proposal?: boolean;\n  /**\n   * When provided alongside `proposal: true`, used as the proposal subdirectory name.\n   * Defaults to \"proposals\". Useful for callers that want to segregate by source\n   * (e.g. \"proposals/research\", \"proposals/outage\").\n   */\n  proposal_subdir?: string;\n}\n\nexport interface SynthesizePreview {\n  changeset: ChangeSet;\n  path: string;\n  title: string;\n  /** True when the preview is a proposal — caller (or `synthesize_promote`) must move it later. */\n  is_proposal?: boolean;\n  /** When `is_proposal` is true, the canonical path that `synthesize_promote` should move it to. */\n  proposed_target?: string;\n}\n\n/**\n * Convert a query answer + provenance into a ChangeSet that can be fed to applyPatch.\n * The shaped note includes provenance frontmatter and auto-inserts [[wikilinks]] for\n * any related_notes that appear as bare titles in the body.\n *\n * Does NOT write to disk — always returns a ChangeSet. Callers pass it to applyPatch.\n *\n * Proposal mode: when `proposal: true`, the path is rewritten to\n * `<proposal_subdir>/<YYYY-MM-DD>-<slug>.md`, the `status` is forced to `proposal`,\n * and `proposed_target` records the original suggested path. `synthesize_promote`\n * later moves the file to that target and clears the proposal frontmatter.\n */\nexport function buildSynthesizeChangeSet(input: SynthesizeNoteInput): SynthesizePreview {\n  const today = new Date().toISOString().slice(0, 10);\n  const title = input.topic.trim();\n  const canonicalPath = input.suggested_path.endsWith(\".md\") ? input.suggested_path : input.suggested_path + \".md\";\n\n  const isProposal = input.proposal === true;\n  const subdir = (input.proposal_subdir ?? \"proposals\").replace(/\\/+$/, \"\");\n  const slug = slugForTopic(title);\n  const path = isProposal ? `${subdir}/${today}-${slug}.md` : canonicalPath;\n\n  const frontmatter: Record<string, unknown> = {\n    title,\n    type: input.type ?? \"note\",\n    status: isProposal ? \"proposal\" : (input.status ?? \"active\"),\n    last_verified: today,\n    confidence: input.confidence ?? \"medium\",\n    ...(input.sources && input.sources.length > 0 && { sources: input.sources }),\n    ...(input.derived_from && input.derived_from.length > 0 && { derived_from: input.derived_from }),\n    ...(input.decision_maker && { decision_maker: input.decision_maker }),\n    ...(input.decided_on && { decided_on: input.decided_on }),\n    ...(input.severity && { severity: input.severity }),\n    ...(input.symptoms && input.symptoms.length > 0 && { symptoms: input.symptoms }),\n    ...(isProposal && { proposed_target: canonicalPath }),\n    ...(input.extra_frontmatter ?? {}),\n  };\n\n  const body = buildBody(title, input.answer, input.related_notes ?? []);\n\n  const create: PatchCreate = { path, content: body, frontmatter };\n  const changeset: ChangeSet = { creates: [create] };\n\n  return {\n    changeset,\n    path,\n    title,\n    ...(isProposal && { is_proposal: true, proposed_target: canonicalPath }),\n  };\n}\n\nfunction slugForTopic(topic: string): string {\n  return topic\n    .toLowerCase()\n    .replace(/[^a-z0-9]+/g, \"-\")\n    .replace(/^-+|-+$/g, \"\")\n    .slice(0, 60) || \"untitled\";\n}\n\nfunction buildBody(title: string, answer: string, relatedNotes: string[]): string {\n  let body = `# ${title}\\n\\n${answer.trim()}\\n`;\n\n  if (relatedNotes.length > 0) {\n    body = autoWikilink(body, relatedNotes);\n    const links = relatedNotes.map((r) => `- [[${wikilinkName(r)}]]`).join(\"\\n\");\n    body += `\\n## Related\\n\\n${links}\\n`;\n  }\n\n  return body;\n}\n\n/**\n * For each related note, replace the first bare occurrence of its title in the body\n * with a [[wikilink]]. Conservative — only replaces whole-word matches outside code blocks.\n */\nfunction autoWikilink(body: string, relatedNotes: string[]): string {\n  // Skip content inside fenced code blocks\n  const parts = body.split(/(```[\\s\\S]*?```)/g);\n  return parts\n    .map((part, i) => {\n      if (i % 2 === 1) return part; // code block\n      let out = part;\n      for (const r of relatedNotes) {\n        const name = wikilinkName(r);\n        if (/[\\[\\]]/.test(out) && out.includes(`[[${name}]]`)) continue; // already linked\n        const escaped = name.replace(/[.*+?^${}()|[\\]\\\\]/g, \"\\\\$&\");\n        const re = new RegExp(`\\\\b${escaped}\\\\b`, \"i\");\n        out = out.replace(re, `[[${name}]]`);\n      }\n      return out;\n    })\n    .join(\"\");\n}\n\nfunction wikilinkName(pathOrName: string): string {\n  // \"decisions/auth-migration.md\" → \"auth-migration\"\n  // \"Auth Migration\" → \"Auth Migration\"\n  const base = basename(pathOrName).replace(/\\.md$/, \"\");\n  return base;\n}\n\nexport interface PromoteInput {\n  /**\n   * Path to the proposal note (relative to vault root). Must have `status: proposal` frontmatter\n   * AND `proposed_target` frontmatter, both written by `buildSynthesizeChangeSet` in proposal mode.\n   */\n  proposal_path: string;\n  /**\n   * Optional override for the destination path. When omitted, the proposal's own\n   * `proposed_target` frontmatter is used.\n   */\n  target_path?: string;\n}\n\nexport interface PromotePreview {\n  changeset: ChangeSet;\n  from: string;\n  to: string;\n}\n\n/**\n * Promote a reviewed proposal to its canonical destination.\n *\n * Reads the proposal's existing content + frontmatter, strips `status: proposal` and\n * `proposed_target` keys, restores the original status (default \"active\"), and returns\n * a ChangeSet that:\n *   - creates the canonical path with the cleaned frontmatter + body\n *   - deletes the proposal path\n *\n * The caller (the MCP tool) reads the proposal file, runs this builder, and applies the\n * resulting changeset via applyPatch — preserving atomicity and rollback semantics.\n */\nexport function buildPromoteChangeSet(input: {\n  proposal_path: string;\n  target_path?: string;\n  body: string;\n  frontmatter: Record<string, unknown>;\n}): PromotePreview {\n  const fm = { ...input.frontmatter };\n  const target = input.target_path ?? 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Default false → fails loudly on detected hand-edits. */\n  force?: boolean;\n  /** Override \"now\" — used by tests for deterministic timestamps. */\n  nowIso?: string;\n}\n\nexport interface RegenerateContractResult {\n  path: string;\n  written: boolean;\n  reason?: string;\n  hand_edit_detected?: boolean;\n  preserved_local_notes_chars?: number;\n}\n\n/**\n * Generate or refresh AGENTS.md at the project root.\n *\n * Behavior:\n *  - If AGENTS.md is absent, write the full contract + an empty Local Notes section.\n *  - If AGENTS.md exists and contains the managed block markers:\n *      * Regenerate the content INSIDE the markers from the current tool/mode inventory.\n *      * Preserve everything OUTSIDE the markers (Local Notes tail, custom sections, frontmatter the\n *        user added).\n *      * If `force` is false and the inside-block content differs from a freshly-generated block AND\n *        the difference is not just a regenerable timestamp/version, fail with hand_edit_detected.\n *  - If AGENTS.md exists without managed-block markers, refuse and report — the user has a custom\n *    AGENTS.md and we should not silently take it over.\n */\nexport async function regenerateAgentsContract(opts: RegenerateContractOptions): Promise<RegenerateContractResult> {\n  const path = join(opts.projectRoot, \"AGENTS.md\");\n  const generatedBlock = buildManagedBlock(opts);\n  const generatedFull = buildFullDocument(opts, generatedBlock);\n\n  if (!existsSync(path)) {\n    await writeFile(path, generatedFull, \"utf-8\");\n    return { path, written: true };\n  }\n\n  const existing = await readFile(path, \"utf-8\");\n  const beginIdx = existing.indexOf(BEGIN_MARKER);\n  const endIdx = existing.indexOf(END_MARKER);\n\n  if (beginIdx === -1 || endIdx === -1 || endIdx < beginIdx) {\n    return {\n      path,\n      written: false,\n      reason:\n        \"AGENTS.md exists but does not contain the semantic-memory managed-block markers. Move your existing content into a Local Notes section outside the managed block, or delete AGENTS.md and re-run to bootstrap from scratch.\",\n    };\n  }\n\n  const existingBlock = existing.slice(beginIdx, endIdx + END_MARKER.length);\n  const localTail = extractLocalTail(existing, endIdx + END_MARKER.length);\n\n  if (!opts.force && hasHandEdits(existingBlock, generatedBlock)) {\n    return {\n      path,\n      written: false,\n      hand_edit_detected: true,\n      reason:\n        \"Managed-block content has been hand-edited. Move your changes to the Local Notes section (outside the managed block) and re-run, or pass force=true to overwrite.\",\n    };\n  }\n\n  // Refresh the entire pre-block prefix (frontmatter + title) so timestamp/version\n  // stamps reflect the current regeneration. Keep the managed block fresh and the\n  // Local Notes tail untouched.\n  const newPrefix = buildPrefix(opts);\n  const newDoc = newPrefix + generatedBlock + localTail;\n  await writeFile(path, newDoc, \"utf-8\");\n  return {\n    path,\n    written: true,\n    preserved_local_notes_chars: localTail.length,\n  };\n}\n\nfunction buildPrefix(opts: RegenerateContractOptions): string {\n  return [\n    \"---\",\n    `generated_by: semantic-memory`,\n    `version: ${opts.pluginVersion}`,\n    `last_generated: ${opts.nowIso ?? new Date().toISOString()}`,\n    \"---\",\n    \"\",\n    \"# Project Agent Contract\",\n    \"\",\n  ].join(\"\\n\");\n}\n\nfunction buildFullDocument(opts: RegenerateContractOptions, managedBlock: string): string {\n  const localNotes = `\\n\\n${LOCAL_NOTES_HEADING}\\n\\n_User-authored content lives here. Preserved across \\`regenerate_contract\\` runs._\\n`;\n  return buildPrefix(opts) + managedBlock + localNotes;\n}\n\nfunction buildManagedBlock(opts: RegenerateContractOptions): string {\n  const lines: string[] = [BEGIN_MARKER, \"\"];\n\n  lines.push(\"## Active Modes\", \"\");\n  const modes = opts.modes ?? defaultModes();\n  for (const m of modes) {\n    const tag = m.isDefault ? \" (default)\" : \"\";\n    lines.push(`- **${m.name}**${tag} — ${m.description}`);\n  }\n  lines.push(\"\");\n\n  lines.push(\"## Required Workflow\", \"\");\n  lines.push(\"1. For multi-step work that needs verification, open a session: `session_start({task})`.\");\n  lines.push(\"2. Use mode-aware retrieval: `search_hybrid`, `read_note`, `list_notes`, `backlinks`/`forwardlinks`.\");\n  lines.push(\"3. Make durable updates via `apply_patch` or `synthesize_note` — never bypass the patch layer for multi-note edits.\");\n  lines.push(\"4. Run verification commands inside a session: `session_run({cmd})`.\");\n  lines.push(\"5. Close with `session_finish({summary})` — refused without verification unless explicitly waived.\");\n  lines.push(\"6. Lint regularly: `lint_vault({checks: ['schema','provenance','stale','broken_links']})`.\");\n  lines.push(\"\");\n\n  lines.push(\"## Tool Surface\", \"\");\n  const live = opts.tools.filter((t) => !t.deprecated);\n  const deprecated = opts.tools.filter((t) => t.deprecated);\n  for (const t of live) {\n    lines.push(`- \\`${t.name}\\` — ${stripDeprecationPrefix(t.description)}`);\n  }\n  if (deprecated.length > 0) {\n    lines.push(\"\");\n    lines.push(\"### Deprecated (removed in v2.0.0)\", \"\");\n    for (const t of deprecated) {\n      lines.push(`- \\`${t.name}\\` — ${stripDeprecationPrefix(t.description)}`);\n    }\n  }\n  lines.push(\"\");\n\n  lines.push(\"## Memory Policy\", \"\");\n  lines.push(\"- Markdown is canonical. The vault under `.claude/.vault/` (or wherever `--notes` points) is the source of truth.\");\n  lines.push(\"- Indexes (vector / graph / FTS) are derived state — rebuildable via `reindex` without losing knowledge.\");\n  lines.push(\"- Provenance frontmatter is required for `note`/`decision`/`gotcha` types — `sources` (external) or `derived_from` (internal).\");\n  lines.push(\"- Mode router lives at `.claude/.semantic-memory/mode` (legacy `.claude/.sidekick-mode` still readable through v1.x); explicit `/mode` is ground truth.\");\n  lines.push(\"\");\n\n  lines.push(END_MARKER);\n  return lines.join(\"\\n\");\n}\n\nfunction defaultModes(): ModeSummary[] {\n  return [\n    { name: \"vault-first\", description: \"Project-scoped prose questions trigger vault consultation with cite-or-deflect.\", isDefault: true },\n    { name: \"research\", description: \"Every source introduced is filed via `ingest_source`; mandatory `synthesize_note` on exit.\" },\n    { name: \"outage-silence\", description: \"No proactive vault search. Terse responses. Postmortem `synthesize_note` on exit.\" },\n  ];\n}\n\nfunction stripDeprecationPrefix(description: string): string {\n  return description.replace(/^\\[DEPRECATED[^\\]]*\\]\\s*/, \"(deprecated) \");\n}\n\nfunction extractLocalTail(existing: string, afterEndIdx: number): string {\n  const tail = existing.slice(afterEndIdx);\n  // Trim a single leading blank-line-then-newline if present so we don't double-space across regenerations.\n  return tail;\n}\n\n/**\n * Detect hand-edits by comparing semantic content of the managed block, ignoring lines that are\n * regenerable (currently no per-block timestamps live inside the block — they're in frontmatter).\n * Returns true if the existing block diverges from what we'd generate now.\n */\nfunction hasHandEdits(existingBlock: string, generatedBlock: string): boolean {\n  return existingBlock.trim() !== generatedBlock.trim();\n}\n\n/**\n * Inspect AGENTS.md without modifying it. Returns whether the file exists, whether it has managed\n * markers, and how many characters of Local Notes tail are preserved.\n */\nexport async function inspectAgentsContract(projectRoot: string): Promise<{\n  path: string;\n  exists: boolean;\n  has_managed_block: boolean;\n  local_notes_chars: number;\n}> {\n  const path = join(projectRoot, \"AGENTS.md\");\n  if (!existsSync(path)) {\n    return { path, exists: false, has_managed_block: false, local_notes_chars: 0 };\n  }\n  const raw = await readFile(path, \"utf-8\");\n  const beginIdx = raw.indexOf(BEGIN_MARKER);\n  const endIdx = raw.indexOf(END_MARKER);\n  if (beginIdx === -1 || endIdx === -1) {\n    return { path, exists: true, has_managed_block: false, local_notes_chars: 0 };\n  }\n  const localTail = raw.slice(endIdx + END_MARKER.length).trim();\n  return { path, exists: true, has_managed_block: true, local_notes_chars: localTail.length 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package/dist/{chunk-JPQHNG3R.js → chunk-SX427M2R.js}

@@ -1,3 +1,8 @@
+import {
+  redact,
+  redactDeep
+} from "./chunk-OEF5U5GV.js";
+
 // src/core/log.ts
 import { readFile, writeFile, appendFile, access } from "fs/promises";
 import { constants } from "fs";
@@ -11,10 +16,11 @@ var HEADER = `# Vault Log
 async function logEvent(vaultPath, input) {
   const path = join(vaultPath, LOG_FILE);
   const ts = input.ts ?? (/* @__PURE__ */ new Date()).toISOString();
-  const entry = { ts, kind: input.kind, summary: input.summary };
-  if (input.payload) entry.payload = input.payload;
+  const summary = redact(input.summary).text;
+  const entry = { ts, kind: input.kind, summary };
+  if (input.payload) entry.payload = redactDeep(input.payload, "precise").value;
   await ensureLogFile(path);
-  const line = `- ${ts} \u2014 ${input.kind}: ${input.summary}
+  const line = `- ${ts} \u2014 ${input.kind}: ${summary}
 `;
   const block = renderYamlBlock(entry);
   await appendFile(path, line + block + "\n", "utf-8");
@@ -144,4 +150,4 @@ export {
   logEvent,
   logQuery
 };
-//# sourceMappingURL=chunk-JPQHNG3R.js.map
+//# sourceMappingURL=chunk-SX427M2R.js.map

package/dist/chunk-SX427M2R.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/core/log.ts"],"sourcesContent":["import { readFile, writeFile, appendFile, access } from \"node:fs/promises\";\nimport { constants } from \"node:fs\";\nimport { join } from \"node:path\";\nimport { redact, redactDeep } from \"./redact.js\";\n\n/**\n * Structured append-only log at the vault root.\n *\n * Shape: one markdown bullet per event, each followed by a fenced `yaml event`\n * block carrying the machine-readable payload. Human scrolling and YAML parsing\n * both work on the same file.\n *\n * Example rendered line pair:\n *   - 2026-04-22T00:00:00Z — ingest: added 3 notes from RFC-1234\n *   ```yaml event\n *   ts: 2026-04-22T00:00:00Z\n *   kind: ingest\n *   payload:\n *     source: RFC-1234\n *     count: 3\n *   ```\n */\n\nconst LOG_FILE = \"log.md\";\nconst HEADER = `# Vault Log\\n\\n> Append-only session and ingest log. Machine-readable YAML blocks follow each line.\\n\\n`;\n\nexport interface LogEventInput {\n  kind: string;\n  summary: string;\n  payload?: Record<string, unknown>;\n  ts?: string;\n}\n\nexport interface LogEntry {\n  ts: string;\n  kind: string;\n  summary: string;\n  payload?: Record<string, unknown>;\n}\n\nexport interface LogQueryOptions {\n  kind?: string;\n  after?: string;\n  before?: string;\n  limit?: number;\n}\n\nexport async function logEvent(vaultPath: string, input: LogEventInput): Promise<LogEntry> {\n  const path = join(vaultPath, LOG_FILE);\n  const ts = input.ts ?? new Date().toISOString();\n  // log.md is a vault note (usually committed): precise set, so paths and ids in payloads survive\n  const summary = redact(input.summary).text;\n  const entry: LogEntry = { ts, kind: input.kind, summary };\n  if (input.payload) entry.payload = redactDeep(input.payload, \"precise\").value;\n\n  await ensureLogFile(path);\n\n  const line = `- ${ts} — ${input.kind}: ${summary}\\n`;\n  const block = renderYamlBlock(entry);\n  await appendFile(path, line + block + \"\\n\", \"utf-8\");\n\n  return entry;\n}\n\nexport async function logQuery(vaultPath: string, opts: LogQueryOptions = {}): Promise<LogEntry[]> {\n  const path = join(vaultPath, LOG_FILE);\n  let raw = \"\";\n  try {\n    raw = await readFile(path, \"utf-8\");\n  } catch {\n    return [];\n  }\n\n  const entries = parseEntries(raw);\n  const filtered = entries.filter((e) => {\n    if (opts.kind && e.kind !== opts.kind) return false;\n    if (opts.after && new Date(e.ts).getTime() < new Date(opts.after).getTime()) return false;\n    if (opts.before && new Date(e.ts).getTime() > new Date(opts.before).getTime()) return false;\n    return true;\n  });\n  if (opts.limit) return filtered.slice(-opts.limit);\n  return filtered;\n}\n\nasync function ensureLogFile(path: string): Promise<void> {\n  try {\n    await access(path, constants.F_OK);\n  } catch {\n    await writeFile(path, HEADER, \"utf-8\");\n  }\n}\n\nfunction renderYamlBlock(entry: LogEntry): string {\n  const lines = [\n    \"```yaml event\",\n    `ts: ${entry.ts}`,\n    `kind: ${entry.kind}`,\n    `summary: ${yamlInline(entry.summary)}`,\n  ];\n  if (entry.payload && Object.keys(entry.payload).length > 0) {\n    lines.push(`payload:`);\n    for (const [k, v] of Object.entries(entry.payload)) {\n      lines.push(`  ${k}: ${yamlInline(v)}`);\n    }\n  }\n  lines.push(\"```\");\n  return lines.join(\"\\n\") + \"\\n\";\n}\n\nfunction yamlInline(v: unknown): string {\n  if (v == null) return \"null\";\n  if (typeof v === \"number\" || typeof v === \"boolean\") return String(v);\n  if (Array.isArray(v)) return \"[\" + v.map((x) => yamlInline(x)).join(\", \") + \"]\";\n  if (typeof v === \"object\") return JSON.stringify(v);\n  const s = String(v);\n  // Quote if it contains colons, special chars, or would be parsed as a non-string\n  if (/[:\\-#&*!|>%@`\"'{}[\\]]|^\\s|\\s$/.test(s) || /^(true|false|null|\\d)/i.test(s)) {\n    return JSON.stringify(s);\n  }\n  return s;\n}\n\nfunction parseEntries(raw: string): LogEntry[] {\n  const entries: LogEntry[] = [];\n  const blockRe = /```yaml event\\n([\\s\\S]*?)```/g;\n  let m: RegExpExecArray | null;\n  while ((m = blockRe.exec(raw)) !== null) {\n    const block = m[1];\n    const parsed = parseFlatYaml(block);\n    if (parsed && typeof parsed.ts === \"string\" && typeof parsed.kind === \"string\") {\n      entries.push(parsed as LogEntry);\n    }\n  }\n  return entries;\n}\n\n/**\n * Minimal line-by-line YAML parser for the fixed shape we emit.\n * Accepts: top-level scalars + `payload:` followed by indented `key: value` pairs.\n * Anything more complex than our renderer produces is not guaranteed.\n */\nfunction parseFlatYaml(block: string): Partial<LogEntry> | null {\n  const out: any = {};\n  const lines = block.split(/\\r?\\n/);\n  let i = 0;\n  while (i < lines.length) {\n    const line = lines[i];\n    if (/^\\s*$/.test(line)) {\n      i++;\n      continue;\n    }\n    const topMatch = line.match(/^([a-z_]+):\\s*(.*)$/i);\n    if (!topMatch) {\n      i++;\n      continue;\n    }\n    const [, key, rhs] = topMatch;\n    if (key === \"payload\") {\n      const payload: Record<string, unknown> = {};\n      i++;\n      while (i < lines.length && /^\\s{2,}[a-z_]/i.test(lines[i])) {\n        const m2 = lines[i].match(/^\\s+([a-z_]+):\\s*(.*)$/i);\n        if (m2) payload[m2[1]] = parseYamlScalar(m2[2]);\n        i++;\n      }\n      out.payload = payload;\n      continue;\n    }\n    out[key] = parseYamlScalar(rhs);\n    i++;\n  }\n  return out;\n}\n\nfunction parseYamlScalar(s: string): unknown {\n  const v = s.trim();\n  if (v === \"\") return \"\";\n  if (v === \"null\") return null;\n  if (v === \"true\") return true;\n  if (v === \"false\") return false;\n  if (/^-?\\d+(\\.\\d+)?$/.test(v)) return Number(v);\n  if (v.startsWith(\"[\") && v.endsWith(\"]\")) {\n    try {\n      return JSON.parse(v);\n    } catch {\n      /* fall through */\n    }\n  }\n  if ((v.startsWith('\"') && v.endsWith('\"')) || (v.startsWith(\"'\") && v.endsWith(\"'\"))) {\n    try {\n      return JSON.parse(v.replace(/^'|'$/g, '\"'));\n    } catch {\n      return v.slice(1, -1);\n    }\n  }\n  return 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package/dist/{chunk-7M3JZOYH.js → chunk-WZEKIUYG.js}

@@ -1,7 +1,10 @@
 import {
   appendToSection,
   replaceSectionBody
-} from "./chunk-WSU4QIPB.js";
+} from "./chunk-XAXK7NM4.js";
+import {
+  redact
+} from "./chunk-OEF5U5GV.js";
 
 // src/core/profile.ts
 import { readFile, writeFile, mkdir } from "fs/promises";
@@ -89,9 +92,10 @@ async function updateProfileSection(vaultPath, section, text, mode = "append") {
   const abs = join(vaultPath, SPEAKER_PROFILE_PATH);
   const raw = await readFile(abs, "utf-8");
   const parsed = matter(raw);
-  const patchedBody = mode === "replace" ? replaceSectionBody(parsed.content, section, text.trim()) : appendToSection(parsed.content, section, `- ${text.trim()}`);
+  const incoming = redact(text.trim());
+  const patchedBody = mode === "replace" ? replaceSectionBody(parsed.content, section, incoming.text) : appendToSection(parsed.content, section, `- ${incoming.text}`);
   await writeFile(abs, matter.stringify(patchedBody, parsed.data), "utf-8");
-  return { path: SPEAKER_PROFILE_PATH };
+  return { path: SPEAKER_PROFILE_PATH, ...incoming.count ? { redacted: incoming.count } : {} };
 }
 
 export {
@@ -102,4 +106,4 @@ export {
   initSpeakerProfile,
   updateProfileSection
 };
-//# sourceMappingURL=chunk-7M3JZOYH.js.map
+//# sourceMappingURL=chunk-WZEKIUYG.js.map

package/dist/chunk-WZEKIUYG.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/core/profile.ts"],"sourcesContent":["import { readFile, writeFile, mkdir } from \"node:fs/promises\";\nimport { existsSync } from \"node:fs\";\nimport { join, dirname } from \"node:path\";\nimport matter from \"gray-matter\";\nimport { redact } from \"./redact.js\";\nimport { replaceSectionBody, appendToSection } from \"./dossier.js\";\n\n/**\n * Speaker profile (v1.5 Phase 11) — the model of THIS human.\n *\n * The difference between an expert who knows the system and one who knows the\n * system *and knows you*: how this person calibrates severity (\"annoying\" vs\n * \"broken\" vs \"on fire\"), what they chronically leave unsaid, how much detail they\n * want back, and the shorthand they use that isn't an entity. One note, one human\n * (multi-speaker is an explicit non-goal). Injected at SessionStart alongside the\n * session digest; updated via capture cues when the user corrects an interpretation.\n */\n\nexport const SPEAKER_PROFILE_PATH = \"profile/speaker.md\";\n\n/** The fixed sections a speaker profile carries. */\nexport const PROFILE_SECTIONS = [\n  \"Severity calibration\",\n  \"Chronic omissions\",\n  \"Verbosity preference\",\n  \"Shorthand & terms\",\n] as const;\n\nexport type ProfileSection = (typeof PROFILE_SECTIONS)[number];\n\nexport interface SpeakerProfile {\n  path: string;\n  /** The whole note body (frontmatter stripped), trimmed. */\n  body: string;\n  /** A capped, injection-ready rendering (headings + non-placeholder lines). */\n  head: string;\n}\n\nexport function speakerProfileTemplate(): string {\n  return `# Speaker profile\n\n_How this human communicates — learned over time, corrected in place. One human, one profile._\n\n## Severity calibration\n\n_What their words map to. e.g. \"annoying\" = low, \"broken\" = ship-blocking, \"on fire\" = drop everything._\n\n## Chronic omissions\n\n_What they habitually leave unsaid — env, repro steps, which service — so you ask up front._\n\n## Verbosity preference\n\n_How much detail they want back: terse answer first, or full reasoning? Code or prose?_\n\n## Shorthand & terms\n\n_Non-entity shorthand: \"the usual\", \"ship it\", \"the thing from yesterday\" — and what each has meant._\n`;\n}\n\n/** True when a line is only a template placeholder (italic prompt) or blank. */\nfunction isPlaceholderLine(line: string): boolean {\n  const t = line.trim();\n  return t === \"\" || /^_.*_$/.test(t);\n}\n\n/**\n * Read the speaker profile, returning a capped injection head that drops the\n * template placeholders (so an unfilled profile injects nothing but its headings,\n * and a filled one injects only the real content). Returns null when absent.\n */\nexport async function readSpeakerProfile(vaultPath: string, maxLines = 30): Promise<SpeakerProfile | null> {\n  const abs = join(vaultPath, SPEAKER_PROFILE_PATH);\n  if (!existsSync(abs)) return null;\n  try {\n    const raw = await readFile(abs, \"utf-8\");\n    const { content } = matter(raw);\n    const body = content.trim();\n    // Build the head: keep headings and real (non-placeholder) content lines.\n    const kept: string[] = [];\n    let lastWasHeading = false;\n    for (const line of body.split(\"\\n\")) {\n      const isHeading = /^#{1,6}\\s/.test(line);\n      if (isHeading) {\n        // Drop a heading immediately followed by nothing real (avoid trailing empty sections at render).\n        kept.push(line.replace(/^#+\\s*/, \"\").trim());\n        lastWasHeading = true;\n        continue;\n      }\n      if (isPlaceholderLine(line)) continue;\n      kept.push(line.trim());\n      lastWasHeading = false;\n    }\n    void lastWasHeading;\n    const head = kept.slice(0, maxLines).join(\"\\n\").trim();\n    return { path: SPEAKER_PROFILE_PATH, body, head };\n  } catch {\n    return null;\n  }\n}\n\nexport interface InitProfileResult {\n  path: string;\n  created: boolean;\n}\n\n/** Scaffold the speaker profile note. No-op (created:false) if it already exists. */\nexport async function initSpeakerProfile(vaultPath: string, today?: string): Promise<InitProfileResult> {\n  const abs = join(vaultPath, SPEAKER_PROFILE_PATH);\n  if (existsSync(abs)) return { path: SPEAKER_PROFILE_PATH, created: false };\n  const date = today ?? new Date().toISOString().slice(0, 10);\n  const fm = {\n    title: \"Speaker profile\",\n    type: \"profile\",\n    status: \"active\",\n    last_verified: date,\n    confidence: \"medium\",\n    evergreen: true,\n  };\n  await mkdir(dirname(abs), { recursive: true });\n  await writeFile(abs, matter.stringify(speakerProfileTemplate(), fm), \"utf-8\");\n  return { path: SPEAKER_PROFILE_PATH, created: true };\n}\n\n/**\n * Update one section of the speaker profile. `mode: \"replace\"` swaps the section\n * body; `mode: \"append\"` adds a line (accretion). Scaffolds the note first if\n * absent. Returns the resolved path.\n */\nexport async function updateProfileSection(\n  vaultPath: string,\n  section: string,\n  text: string,\n  mode: \"replace\" | \"append\" = \"append\"\n): Promise<{ path: string; redacted?: number }> {\n  await initSpeakerProfile(vaultPath);\n  const abs = join(vaultPath, SPEAKER_PROFILE_PATH);\n  const raw = await readFile(abs, \"utf-8\");\n  const parsed = matter(raw);\n  const incoming = redact(text.trim());\n  const patchedBody = mode === \"replace\"\n    ? replaceSectionBody(parsed.content, section, incoming.text)\n    : appendToSection(parsed.content, section, `- ${incoming.text}`);\n  await writeFile(abs, matter.stringify(patchedBody, parsed.data), \"utf-8\");\n  return { path: SPEAKER_PROFILE_PATH, ...(incoming.count ? { redacted: incoming.count } : {}) };\n}\n"],"mappings":";;;;;;;;;AAAA,SAAS,UAAU,WAAW,aAAa;AAC3C,SAAS,kBAAkB;AAC3B,SAAS,MAAM,eAAe;AAC9B,OAAO,YAAY;AAeZ,IAAM,uBAAuB;AAG7B,IAAM,mBAAmB;AAAA,EAC9B;AAAA,EACA;AAAA,EACA;AAAA,EACA;AACF;AAYO,SAAS,yBAAiC;AAC/C,SAAO;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAoBT;AAGA,SAAS,kBAAkB,MAAuB;AAChD,QAAM,IAAI,KAAK,KAAK;AACpB,SAAO,MAAM,MAAM,SAAS,KAAK,CAAC;AACpC;AAOA,eAAsB,mBAAmB,WAAmB,WAAW,IAAoC;AACzG,QAAM,MAAM,KAAK,WAAW,oBAAoB;AAChD,MAAI,CAAC,WAAW,GAAG,EAAG,QAAO;AAC7B,MAAI;AACF,UAAM,MAAM,MAAM,SAAS,KAAK,OAAO;AACvC,UAAM,EAAE,QAAQ,IAAI,OAAO,GAAG;AAC9B,UAAM,OAAO,QAAQ,KAAK;AAE1B,UAAM,OAAiB,CAAC;AACxB,QAAI,iBAAiB;AACrB,eAAW,QAAQ,KAAK,MAAM,IAAI,GAAG;AACnC,YAAM,YAAY,YAAY,KAAK,IAAI;AACvC,UAAI,WAAW;AAEb,aAAK,KAAK,KAAK,QAAQ,UAAU,EAAE,EAAE,KAAK,CAAC;AAC3C,yBAAiB;AACjB;AAAA,MACF;AACA,UAAI,kBAAkB,IAAI,EAAG;AAC7B,WAAK,KAAK,KAAK,KAAK,CAAC;AACrB,uBAAiB;AAAA,IACnB;AACA,SAAK;AACL,UAAM,OAAO,KAAK,MAAM,GAAG,QAAQ,EAAE,KAAK,IAAI,EAAE,KAAK;AACrD,WAAO,EAAE,MAAM,sBAAsB,MAAM,KAAK;AAAA,EAClD,QAAQ;AACN,WAAO;AAAA,EACT;AACF;AAQA,eAAsB,mBAAmB,WAAmB,OAA4C;AACtG,QAAM,MAAM,KAAK,WAAW,oBAAoB;AAChD,MAAI,WAAW,GAAG,EAAG,QAAO,EAAE,MAAM,sBAAsB,SAAS,MAAM;AACzE,QAAM,OAAO,UAAS,oBAAI,KAAK,GAAE,YAAY,EAAE,MAAM,GAAG,EAAE;AAC1D,QAAM,KAAK;AAAA,IACT,OAAO;AAAA,IACP,MAAM;AAAA,IACN,QAAQ;AAAA,IACR,eAAe;AAAA,IACf,YAAY;AAAA,IACZ,WAAW;AAAA,EACb;AACA,QAAM,MAAM,QAAQ,GAAG,GAAG,EAAE,WAAW,KAAK,CAAC;AAC7C,QAAM,UAAU,KAAK,OAAO,UAAU,uBAAuB,GAAG,EAAE,GAAG,OAAO;AAC5E,SAAO,EAAE,MAAM,sBAAsB,SAAS,KAAK;AACrD;AAOA,eAAsB,qBACpB,WACA,SACA,MACA,OAA6B,UACiB;AAC9C,QAAM,mBAAmB,SAAS;AAClC,QAAM,MAAM,KAAK,WAAW,oBAAoB;AAChD,QAAM,MAAM,MAAM,SAAS,KAAK,OAAO;AACvC,QAAM,SAAS,OAAO,GAAG;AACzB,QAAM,WAAW,OAAO,KAAK,KAAK,CAAC;AACnC,QAAM,cAAc,SAAS,YACzB,mBAAmB,OAAO,SAAS,SAAS,SAAS,IAAI,IACzD,gBAAgB,OAAO,SAAS,SAAS,KAAK,SAAS,IAAI,EAAE;AACjE,QAAM,UAAU,KAAK,OAAO,UAAU,aAAa,OAAO,IAAI,GAAG,OAAO;AACxE,SAAO,EAAE,MAAM,sBAAsB,GAAI,SAAS,QAAQ,EAAE,UAAU,SAAS,MAAM,IAAI,CAAC,EAAG;AAC/F;","names":[]}

package/dist/{chunk-WSU4QIPB.js → chunk-XAXK7NM4.js}

@@ -1,6 +1,9 @@
 import {
   deriveSessionDir
-} from "./chunk-S4KW7VH4.js";
+} from "./chunk-LGQPP5FQ.js";
+import {
+  redact
+} from "./chunk-OEF5U5GV.js";
 
 // src/core/dossier.ts
 import { readFile, writeFile, mkdir } from "fs/promises";
@@ -186,6 +189,7 @@ async function initDossier(vaultPath, entity, opts = {}) {
   const abs = join(vaultPath, rel);
   if (existsSync(abs)) return { path: rel, created: false, entity };
   const today = (/* @__PURE__ */ new Date()).toISOString().slice(0, 10);
+  const purpose = redact(opts.purpose ?? "");
   const fm = {
     title: entity,
     type: "dossier",
@@ -196,11 +200,11 @@ async function initDossier(vaultPath, entity, opts = {}) {
     ...opts.aliases && opts.aliases.length > 0 ? { aliases: opts.aliases } : {},
     ...opts.seeded_from ? { sources: [opts.seeded_from] } : {}
   };
-  const body = dossierTemplate(entity, { purpose: opts.purpose, seeded_from: opts.seeded_from });
+  const body = dossierTemplate(entity, { purpose: opts.purpose === void 0 ? void 0 : purpose.text, seeded_from: opts.seeded_from });
   await mkdir(join(vaultPath, DOSSIER_DIR), { recursive: true });
   await writeFile(abs, matter.stringify(body, fm), "utf-8");
   await compileDossiers(vaultPath);
-  return { path: rel, created: true, entity };
+  return { path: rel, created: true, entity, ...purpose.count ? { redacted: purpose.count } : {} };
 }
 async function appendIncident(vaultPath, entityOrPath, incident, opts = {}) {
   const rel = await resolveDossierPath(vaultPath, entityOrPath);
@@ -208,21 +212,23 @@ async function appendIncident(vaultPath, entityOrPath, incident, opts = {}) {
   const doc = await readDossierRaw(vaultPath, rel);
   if (!doc) return null;
   const today = opts.today ?? (/* @__PURE__ */ new Date()).toISOString().slice(0, 10);
-  const line = `- ${today} \u2014 ${incident.trim()}`;
+  const text = redact(incident.trim());
+  const line = `- ${today} \u2014 ${text.text}`;
   const patched = appendToSection(doc.raw, "Incident log", line);
   await writeFile(join(vaultPath, rel), patched, "utf-8");
   await compileDossiers(vaultPath);
-  return { path: rel };
+  return { path: rel, ...text.count ? { redacted: text.count } : {} };
 }
 async function setCurrentState(vaultPath, entityOrPath, state) {
   const rel = await resolveDossierPath(vaultPath, entityOrPath);
   if (!rel) return null;
   const doc = await readDossierRaw(vaultPath, rel);
   if (!doc) return null;
-  const patched = replaceSectionBody(doc.raw, "Current state", state.trim());
+  const text = redact(state.trim());
+  const patched = replaceSectionBody(doc.raw, "Current state", text.text);
   await writeFile(join(vaultPath, rel), patched, "utf-8");
   await compileDossiers(vaultPath);
-  return { path: rel };
+  return { path: rel, ...text.count ? { redacted: text.count } : {} };
 }
 function locateSection(markdown, heading) {
   const lines = markdown.split("\n");
@@ -308,4 +314,4 @@ export {
   appendToSection,
   replaceSectionBody
 };
-//# sourceMappingURL=chunk-WSU4QIPB.js.map
+//# sourceMappingURL=chunk-XAXK7NM4.js.map

package/dist/chunk-XAXK7NM4.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/core/dossier.ts","../src/core/section.ts"],"sourcesContent":["import { readFile, writeFile, mkdir } from \"node:fs/promises\";\nimport { existsSync } from \"node:fs\";\nimport { join } from \"node:path\";\nimport { glob } from \"glob\";\nimport matter from \"gray-matter\";\nimport { redact } from \"./redact.js\";\nimport { deriveSessionDir } from \"./session.js\";\nimport { extractSection } from \"./section.js\";\n\n/**\n * Entity dossiers (v1.5 Phase 8) — the organizing unit of the resident expert.\n *\n * A dossier is a living note about one critical component/entity: what it is, how\n * it fails, which knobs to turn, its incident history, and its current state.\n * Knowledge accretes IN PLACE (incidents append to a log section; current-state is\n * revised) instead of spawning a new note per event — so the entity, not the file,\n * is the memory's unit. Canonical storage is markdown under <vault>/dossiers/\n * (type `dossier`); a derived JSON cache under .claude/.semantic-memory/ lets the\n * hot-path hook resolve an utterance to a dossier head for two-hop retrieval.\n */\n\nexport const DOSSIER_DIR = \"dossiers\";\nconst CACHE_FILE = \"dossier-cache.json\";\n\n/** The fixed section skeleton every dossier carries (order is meaningful). */\nexport const DOSSIER_SECTIONS = [\n  \"Purpose\",\n  \"Failure modes\",\n  \"Knobs & commands\",\n  \"Incident log\",\n  \"Current state\",\n] as const;\n\nexport type DossierSection = (typeof DOSSIER_SECTIONS)[number];\n\nexport interface DossierEntry {\n  /** The canonical entity name (e.g. \"payment-gateway\"). */\n  entity: string;\n  /** The human's phrases for this entity (feed the lexicon compiler). */\n  aliases: string[];\n  /** Dossier note path relative to vault root. */\n  path: string;\n  /** First paragraph of the Purpose section — the head injected on two-hop. */\n  purpose: string;\n  /** The Current state section body — the freshest one-liner about the entity. */\n  current_state: string;\n}\n\nexport function slugifyEntity(entity: string): string {\n  return (\n    entity\n      .toLowerCase()\n      .replace(/[^a-z0-9]+/g, \"-\")\n      .replace(/^-+|-+$/g, \"\")\n      .slice(0, 60) || \"entity\"\n  );\n}\n\nexport function normalizeEntity(s: string): string {\n  return s.toLowerCase().trim().replace(/\\s+/g, \" \");\n}\n\n/** Body-only text of a section (heading + leading/trailing blank lines stripped). */\nfunction sectionBody(markdown: string, heading: string): string {\n  const section = extractSection(markdown, heading);\n  if (!section) return \"\";\n  // Drop the heading line, collapse to a trimmed body.\n  return section\n    .split(\"\\n\")\n    .slice(1)\n    .join(\"\\n\")\n    .trim();\n}\n\n/** First non-empty paragraph of a section body (the \"head\" for injection). */\nfunction firstParagraph(body: string): string {\n  const para = body.split(/\\n\\s*\\n/).map((p) => p.trim()).find(Boolean);\n  return para ?? \"\";\n}\n\n/**\n * The dossier template — the fixed skeleton `dossier init` scaffolds and every\n * section edit patches into. Placeholders are intentionally terse prompts, not\n * prose, so an empty dossier is cheap to read and obvious to fill.\n */\nexport function dossierTemplate(entity: string, opts: { purpose?: string; seeded_from?: string } = {}): string {\n  const purpose = opts.purpose?.trim() || `_What ${entity} is and why it exists._`;\n  const seedNote = opts.seeded_from ? `\\n<!-- seeded from ${opts.seeded_from} -->\\n` : \"\";\n  return `# ${entity}\n${seedNote}\n## Purpose\n\n${purpose}\n\n## Failure modes\n\n_How it breaks, and the tell-tale symptoms._\n\n## Knobs & commands\n\n_The buttons to push: commands, config, flags, dashboards._\n\n## Incident log\n\n_Dated entries append here (newest last). Each: what happened → cause → fix._\n\n## Current state\n\n_The single freshest sentence about where this entity stands right now._\n`;\n}\n\n/** Read every dossier note into an entry (best-effort; skips unreadable files). */\nexport async function listDossiers(vaultPath: string): Promise<DossierEntry[]> {\n  const files = await glob(`${DOSSIER_DIR}/**/*.md`, { cwd: vaultPath });\n  const entries: DossierEntry[] = [];\n  for (const rel of files) {\n    try {\n      const raw = await readFile(join(vaultPath, rel), \"utf-8\");\n      const { data, content } = matter(raw);\n      if (data.type !== \"dossier\") continue;\n      const entity = typeof data.entity === \"string\" && data.entity.trim() ? data.entity.trim() : rel.replace(/^dossiers\\//, \"\").replace(/\\.md$/, \"\");\n      const aliases = Array.isArray(data.aliases) ? data.aliases.map(String).map((a) => a.trim()).filter(Boolean) : [];\n      entries.push({\n        entity,\n        aliases,\n        path: rel,\n        purpose: firstParagraph(sectionBody(content, \"Purpose\")),\n        current_state: sectionBody(content, \"Current state\"),\n      });\n    } catch {\n      /* skip unreadable dossier */\n    }\n  }\n  return entries.sort((a, b) => a.entity.localeCompare(b.entity));\n}\n\n/** Compile all dossiers into the derived cache the hook reads for two-hop routing. */\nexport async function compileDossiers(vaultPath: string): Promise<DossierEntry[]> {\n  const entries = await listDossiers(vaultPath);\n  try {\n    const dir = deriveSessionDir(vaultPath);\n    await mkdir(dir, { recursive: true });\n    await writeFile(\n      join(dir, CACHE_FILE),\n      JSON.stringify({ compiledAt: new Date().toISOString(), dossiers: entries }, null, 2),\n      \"utf-8\"\n    );\n  } catch {\n    /* cache write is best-effort */\n  }\n  return entries;\n}\n\n/** Fast read for the hook: use the cache if present, else compile. */\nexport async function loadDossierCache(vaultPath: string): Promise<DossierEntry[]> {\n  const cachePath = join(deriveSessionDir(vaultPath), CACHE_FILE);\n  if (existsSync(cachePath)) {\n    try {\n      const data = JSON.parse(await readFile(cachePath, \"utf-8\"));\n      if (Array.isArray(data?.dossiers)) return data.dossiers as DossierEntry[];\n    } catch {\n      /* fall through to recompile */\n    }\n  }\n  return compileDossiers(vaultPath);\n}\n\n/** Find a dossier by exact entity name or any of its aliases (normalized). */\nexport function findDossier(entries: DossierEntry[], entityOrAlias: string): DossierEntry | undefined {\n  const n = normalizeEntity(entityOrAlias);\n  return entries.find(\n    (d) => normalizeEntity(d.entity) === n || d.aliases.some((a) => normalizeEntity(a) === n)\n  );\n}\n\n/**\n * Resolve an utterance to a dossier for two-hop retrieval: the query mentions the\n * entity name or one of its aliases. Returns the best (longest-alias) match so a\n * specific phrase wins over a generic one. Deterministic — no LLM, no embedding.\n */\nexport function resolveDossierForQuery(entries: DossierEntry[], query: string): DossierEntry | undefined {\n  const nq = normalizeEntity(query);\n  let best: { entry: DossierEntry; keyLen: number } | undefined;\n  for (const d of entries) {\n    const keys = [d.entity, ...d.aliases].map(normalizeEntity).filter(Boolean);\n    for (const k of keys) {\n      // Word-ish containment: the key appears in the query.\n      if (nq.includes(k) && (!best || k.length > best.keyLen)) {\n        best = { entry: d, keyLen: k.length };\n      }\n    }\n  }\n  return best?.entry;\n}\n\nasync function readDossierRaw(vaultPath: string, rel: string): Promise<{ raw: string; entity: string } | null> {\n  const abs = join(vaultPath, rel);\n  if (!existsSync(abs)) return null;\n  try {\n    const raw = await readFile(abs, \"utf-8\");\n    const { data } = matter(raw);\n    if (data.type !== \"dossier\") return null;\n    const entity = typeof data.entity === \"string\" ? data.entity : rel;\n    return { raw, entity };\n  } catch {\n    return null;\n  }\n}\n\n/** Resolve an entity/alias/path argument to a concrete dossier note path. */\nexport async function resolveDossierPath(vaultPath: string, entityOrPath: string): Promise<string | null> {\n  // Direct path?\n  if (entityOrPath.endsWith(\".md\") && existsSync(join(vaultPath, entityOrPath))) return entityOrPath;\n  const entries = await listDossiers(vaultPath);\n  const match = findDossier(entries, entityOrPath);\n  if (match) return match.path;\n  // Fall back to the slug path even if not yet created.\n  return null;\n}\n\nexport interface InitDossierResult {\n  path: string;\n  created: boolean;\n  entity: string;\n  redacted?: number;\n}\n\n/**\n * Scaffold a dossier for an entity. No-op (created:false) if one already exists for\n * that entity/slug. `seeded_from` records provenance (e.g. a babel-fish project-map\n * entry) without failing when that source is absent — same fail-open posture as the\n * v1.2 code-symbol drift seed.\n */\nexport async function initDossier(\n  vaultPath: string,\n  entity: string,\n  opts: { aliases?: string[]; purpose?: string; seeded_from?: string } = {}\n): Promise<InitDossierResult> {\n  const existing = await listDossiers(vaultPath);\n  const already = findDossier(existing, entity);\n  if (already) return { path: already.path, created: false, entity: already.entity };\n\n  const rel = join(DOSSIER_DIR, `${slugifyEntity(entity)}.md`);\n  const abs = join(vaultPath, rel);\n  if (existsSync(abs)) return { path: rel, created: false, entity };\n\n  const today = new Date().toISOString().slice(0, 10);\n  const purpose = redact(opts.purpose ?? \"\");\n  const fm: Record<string, unknown> = {\n    title: entity,\n    type: \"dossier\",\n    entity,\n    status: \"active\",\n    last_verified: today,\n    confidence: \"medium\",\n    ...(opts.aliases && opts.aliases.length > 0 ? { aliases: opts.aliases } : {}),\n    ...(opts.seeded_from ? { sources: [opts.seeded_from] } : {}),\n  };\n  const body = dossierTemplate(entity, { purpose: opts.purpose === undefined ? undefined : purpose.text, seeded_from: opts.seeded_from });\n  await mkdir(join(vaultPath, DOSSIER_DIR), { recursive: true });\n  await writeFile(abs, matter.stringify(body, fm), \"utf-8\");\n  await compileDossiers(vaultPath);\n  return { path: rel, created: true, entity, ...(purpose.count ? { redacted: purpose.count } : {}) };\n}\n\n/**\n * Append a dated incident line to a dossier's Incident log (accretion, never a new\n * file). Returns the resolved path, or null if no dossier exists for the entity.\n */\nexport async function appendIncident(\n  vaultPath: string,\n  entityOrPath: string,\n  incident: string,\n  opts: { today?: string } = {}\n): Promise<{ path: string; redacted?: number } | null> {\n  const rel = await resolveDossierPath(vaultPath, entityOrPath);\n  if (!rel) return null;\n  const doc = await readDossierRaw(vaultPath, rel);\n  if (!doc) return null;\n  const today = opts.today ?? new Date().toISOString().slice(0, 10);\n  const text = redact(incident.trim());\n  const line = `- ${today} — ${text.text}`;\n  const patched = appendToSection(doc.raw, \"Incident log\", line);\n  await writeFile(join(vaultPath, rel), patched, \"utf-8\");\n  await compileDossiers(vaultPath);\n  return { path: rel, ...(text.count ? { redacted: text.count } : {}) };\n}\n\n/**\n * Replace the body of a dossier's Current state section (the freshest one-liner).\n * Returns the resolved path, or null if no dossier exists for the entity.\n */\nexport async function setCurrentState(\n  vaultPath: string,\n  entityOrPath: string,\n  state: string\n): Promise<{ path: string; redacted?: number } | null> {\n  const rel = await resolveDossierPath(vaultPath, entityOrPath);\n  if (!rel) return null;\n  const doc = await readDossierRaw(vaultPath, rel);\n  if (!doc) return null;\n  const text = redact(state.trim());\n  const patched = replaceSectionBody(doc.raw, \"Current state\", text.text);\n  await writeFile(join(vaultPath, rel), patched, \"utf-8\");\n  await compileDossiers(vaultPath);\n  return { path: rel, ...(text.count ? { redacted: text.count } : {}) };\n}\n\n// --- section-level markdown editing (heading-scoped, format-preserving) ---\n\n/** Split into lines, find a `## <heading>` (case-insensitive), return its bounds. */\nfunction locateSection(markdown: string, heading: string): { start: number; level: number; end: number; lines: string[] } | null {\n  const lines = markdown.split(\"\\n\");\n  const want = heading.trim().toLowerCase();\n  let start = -1;\n  let level = 0;\n  for (let i = 0; i < lines.length; i++) {\n    const m = lines[i].match(/^(#{1,6})\\s+(.*?)\\s*$/);\n    if (m && m[2].trim().toLowerCase() === want) {\n      start = i;\n      level = m[1].length;\n      break;\n    }\n  }\n  if (start === -1) return null;\n  let end = lines.length;\n  for (let i = start + 1; i < lines.length; i++) {\n    const m = lines[i].match(/^(#{1,6})\\s+/);\n    if (m && m[1].length <= level) {\n      end = i;\n      break;\n    }\n  }\n  return { start, level, end, lines };\n}\n\n/** True if a section body is only the template placeholder (an italic prompt). */\nfunction isPlaceholderBody(body: string): boolean {\n  const t = body.trim();\n  return t === \"\" || (/^_.*_$/.test(t) && !t.includes(\"\\n\"));\n}\n\n/** Append a line to the end of a section's body (before the next heading/EOF). */\nexport function appendToSection(markdown: string, heading: string, line: string): string {\n  const loc = locateSection(markdown, heading);\n  if (!loc) {\n    // Section absent — append a fresh one at EOF.\n    const sep = markdown.endsWith(\"\\n\") ? \"\" : \"\\n\";\n    return `${markdown}${sep}\\n## ${heading}\\n\\n${line}\\n`;\n  }\n  const { lines, start, end } = loc;\n  const body = lines.slice(start + 1, end).join(\"\\n\");\n  // If the body is just the placeholder prompt, replace it with the first real line.\n  const bodyStripped = body.trim();\n  const replacePlaceholder = isPlaceholderBody(bodyStripped);\n  // Find the last non-empty line index within the section body.\n  let insertAt = end;\n  while (insertAt - 1 > start && lines[insertAt - 1].trim() === \"\") insertAt--;\n  const before = lines.slice(0, replacePlaceholder ? start + 1 : insertAt);\n  const after = lines.slice(replacePlaceholder ? end : insertAt);\n  const injected = replacePlaceholder ? 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