@theglitchking/semantic-memory 1.2.2 → 1.5.0

package/dist/chunk-7M3JZOYH.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/core/profile.ts"],"sourcesContent":["import { readFile, writeFile, mkdir } from \"node:fs/promises\";\nimport { existsSync } from \"node:fs\";\nimport { join, dirname } from \"node:path\";\nimport matter from \"gray-matter\";\nimport { replaceSectionBody, appendToSection } from \"./dossier.js\";\n\n/**\n * Speaker profile (v1.5 Phase 11) — the model of THIS human.\n *\n * The difference between an expert who knows the system and one who knows the\n * system *and knows you*: how this person calibrates severity (\"annoying\" vs\n * \"broken\" vs \"on fire\"), what they chronically leave unsaid, how much detail they\n * want back, and the shorthand they use that isn't an entity. One note, one human\n * (multi-speaker is an explicit non-goal). Injected at SessionStart alongside the\n * session digest; updated via capture cues when the user corrects an interpretation.\n */\n\nexport const SPEAKER_PROFILE_PATH = \"profile/speaker.md\";\n\n/** The fixed sections a speaker profile carries. */\nexport const PROFILE_SECTIONS = [\n  \"Severity calibration\",\n  \"Chronic omissions\",\n  \"Verbosity preference\",\n  \"Shorthand & terms\",\n] as const;\n\nexport type ProfileSection = (typeof PROFILE_SECTIONS)[number];\n\nexport interface SpeakerProfile {\n  path: string;\n  /** The whole note body (frontmatter stripped), trimmed. */\n  body: string;\n  /** A capped, injection-ready rendering (headings + non-placeholder lines). */\n  head: string;\n}\n\nexport function speakerProfileTemplate(): string {\n  return `# Speaker profile\n\n_How this human communicates — learned over time, corrected in place. One human, one profile._\n\n## Severity calibration\n\n_What their words map to. e.g. \"annoying\" = low, \"broken\" = ship-blocking, \"on fire\" = drop everything._\n\n## Chronic omissions\n\n_What they habitually leave unsaid — env, repro steps, which service — so you ask up front._\n\n## Verbosity preference\n\n_How much detail they want back: terse answer first, or full reasoning? Code or prose?_\n\n## Shorthand & terms\n\n_Non-entity shorthand: \"the usual\", \"ship it\", \"the thing from yesterday\" — and what each has meant._\n`;\n}\n\n/** True when a line is only a template placeholder (italic prompt) or blank. */\nfunction isPlaceholderLine(line: string): boolean {\n  const t = line.trim();\n  return t === \"\" || /^_.*_$/.test(t);\n}\n\n/**\n * Read the speaker profile, returning a capped injection head that drops the\n * template placeholders (so an unfilled profile injects nothing but its headings,\n * and a filled one injects only the real content). Returns null when absent.\n */\nexport async function readSpeakerProfile(vaultPath: string, maxLines = 30): Promise<SpeakerProfile | null> {\n  const abs = join(vaultPath, SPEAKER_PROFILE_PATH);\n  if (!existsSync(abs)) return null;\n  try {\n    const raw = await readFile(abs, \"utf-8\");\n    const { content } = matter(raw);\n    const body = content.trim();\n    // Build the head: keep headings and real (non-placeholder) content lines.\n    const kept: string[] = [];\n    let lastWasHeading = false;\n    for (const line of body.split(\"\\n\")) {\n      const isHeading = /^#{1,6}\\s/.test(line);\n      if (isHeading) {\n        // Drop a heading immediately followed by nothing real (avoid trailing empty sections at render).\n        kept.push(line.replace(/^#+\\s*/, \"\").trim());\n        lastWasHeading = true;\n        continue;\n      }\n      if (isPlaceholderLine(line)) continue;\n      kept.push(line.trim());\n      lastWasHeading = false;\n    }\n    void lastWasHeading;\n    const head = kept.slice(0, maxLines).join(\"\\n\").trim();\n    return { path: SPEAKER_PROFILE_PATH, body, head };\n  } catch {\n    return null;\n  }\n}\n\nexport interface InitProfileResult {\n  path: string;\n  created: boolean;\n}\n\n/** Scaffold the speaker profile note. No-op (created:false) if it already exists. */\nexport async function initSpeakerProfile(vaultPath: string, today?: string): Promise<InitProfileResult> {\n  const abs = join(vaultPath, SPEAKER_PROFILE_PATH);\n  if (existsSync(abs)) return { path: SPEAKER_PROFILE_PATH, created: false };\n  const date = today ?? new Date().toISOString().slice(0, 10);\n  const fm = {\n    title: \"Speaker profile\",\n    type: \"profile\",\n    status: \"active\",\n    last_verified: date,\n    confidence: \"medium\",\n    evergreen: true,\n  };\n  await mkdir(dirname(abs), { recursive: true });\n  await writeFile(abs, matter.stringify(speakerProfileTemplate(), fm), \"utf-8\");\n  return { path: SPEAKER_PROFILE_PATH, created: true };\n}\n\n/**\n * Update one section of the speaker profile. `mode: \"replace\"` swaps the section\n * body; `mode: \"append\"` adds a line (accretion). Scaffolds the note first if\n * absent. Returns the resolved path.\n */\nexport async function updateProfileSection(\n  vaultPath: string,\n  section: string,\n  text: string,\n  mode: \"replace\" | \"append\" = \"append\"\n): Promise<{ path: string }> {\n  await initSpeakerProfile(vaultPath);\n  const abs = join(vaultPath, SPEAKER_PROFILE_PATH);\n  const raw = await readFile(abs, \"utf-8\");\n  const parsed = matter(raw);\n  const patchedBody = mode === \"replace\"\n    ? replaceSectionBody(parsed.content, section, text.trim())\n    : appendToSection(parsed.content, section, `- ${text.trim()}`);\n  await writeFile(abs, matter.stringify(patchedBody, parsed.data), \"utf-8\");\n  return { path: SPEAKER_PROFILE_PATH };\n}\n"],"mappings":";;;;;;AAAA,SAAS,UAAU,WAAW,aAAa;AAC3C,SAAS,kBAAkB;AAC3B,SAAS,MAAM,eAAe;AAC9B,OAAO,YAAY;AAcZ,IAAM,uBAAuB;AAG7B,IAAM,mBAAmB;AAAA,EAC9B;AAAA,EACA;AAAA,EACA;AAAA,EACA;AACF;AAYO,SAAS,yBAAiC;AAC/C,SAAO;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAoBT;AAGA,SAAS,kBAAkB,MAAuB;AAChD,QAAM,IAAI,KAAK,KAAK;AACpB,SAAO,MAAM,MAAM,SAAS,KAAK,CAAC;AACpC;AAOA,eAAsB,mBAAmB,WAAmB,WAAW,IAAoC;AACzG,QAAM,MAAM,KAAK,WAAW,oBAAoB;AAChD,MAAI,CAAC,WAAW,GAAG,EAAG,QAAO;AAC7B,MAAI;AACF,UAAM,MAAM,MAAM,SAAS,KAAK,OAAO;AACvC,UAAM,EAAE,QAAQ,IAAI,OAAO,GAAG;AAC9B,UAAM,OAAO,QAAQ,KAAK;AAE1B,UAAM,OAAiB,CAAC;AACxB,QAAI,iBAAiB;AACrB,eAAW,QAAQ,KAAK,MAAM,IAAI,GAAG;AACnC,YAAM,YAAY,YAAY,KAAK,IAAI;AACvC,UAAI,WAAW;AAEb,aAAK,KAAK,KAAK,QAAQ,UAAU,EAAE,EAAE,KAAK,CAAC;AAC3C,yBAAiB;AACjB;AAAA,MACF;AACA,UAAI,kBAAkB,IAAI,EAAG;AAC7B,WAAK,KAAK,KAAK,KAAK,CAAC;AACrB,uBAAiB;AAAA,IACnB;AACA,SAAK;AACL,UAAM,OAAO,KAAK,MAAM,GAAG,QAAQ,EAAE,KAAK,IAAI,EAAE,KAAK;AACrD,WAAO,EAAE,MAAM,sBAAsB,MAAM,KAAK;AAAA,EAClD,QAAQ;AACN,WAAO;AAAA,EACT;AACF;AAQA,eAAsB,mBAAmB,WAAmB,OAA4C;AACtG,QAAM,MAAM,KAAK,WAAW,oBAAoB;AAChD,MAAI,WAAW,GAAG,EAAG,QAAO,EAAE,MAAM,sBAAsB,SAAS,MAAM;AACzE,QAAM,OAAO,UAAS,oBAAI,KAAK,GAAE,YAAY,EAAE,MAAM,GAAG,EAAE;AAC1D,QAAM,KAAK;AAAA,IACT,OAAO;AAAA,IACP,MAAM;AAAA,IACN,QAAQ;AAAA,IACR,eAAe;AAAA,IACf,YAAY;AAAA,IACZ,WAAW;AAAA,EACb;AACA,QAAM,MAAM,QAAQ,GAAG,GAAG,EAAE,WAAW,KAAK,CAAC;AAC7C,QAAM,UAAU,KAAK,OAAO,UAAU,uBAAuB,GAAG,EAAE,GAAG,OAAO;AAC5E,SAAO,EAAE,MAAM,sBAAsB,SAAS,KAAK;AACrD;AAOA,eAAsB,qBACpB,WACA,SACA,MACA,OAA6B,UACF;AAC3B,QAAM,mBAAmB,SAAS;AAClC,QAAM,MAAM,KAAK,WAAW,oBAAoB;AAChD,QAAM,MAAM,MAAM,SAAS,KAAK,OAAO;AACvC,QAAM,SAAS,OAAO,GAAG;AACzB,QAAM,cAAc,SAAS,YACzB,mBAAmB,OAAO,SAAS,SAAS,KAAK,KAAK,CAAC,IACvD,gBAAgB,OAAO,SAAS,SAAS,KAAK,KAAK,KAAK,CAAC,EAAE;AAC/D,QAAM,UAAU,KAAK,OAAO,UAAU,aAAa,OAAO,IAAI,GAAG,OAAO;AACxE,SAAO,EAAE,MAAM,qBAAqB;AACtC;","names":[]}

package/dist/chunk-A3KYHKB5.js

@@ -0,0 +1,176 @@
+import {
+  listDossiers
+} from "./chunk-WSU4QIPB.js";
+import {
+  deriveSessionDir
+} from "./chunk-S4KW7VH4.js";
+
+// src/core/lexicon.ts
+import { readFile, writeFile, mkdir, unlink } from "fs/promises";
+import { existsSync } from "fs";
+import { join, dirname } from "path";
+import { glob } from "glob";
+import matter from "gray-matter";
+var CACHE_FILE = "lexicon-cache.json";
+var LEXICON_DIR = "lexicon";
+function normalizePhrase(s) {
+  return s.toLowerCase().trim().replace(/\s+/g, " ");
+}
+function slugify(s) {
+  return s.toLowerCase().replace(/[^a-z0-9]+/g, "-").replace(/^-+|-+$/g, "").slice(0, 60) || "alias";
+}
+function confidenceFor(evidenceCount) {
+  return evidenceCount >= 3 ? "high" : evidenceCount >= 2 ? "medium" : "low";
+}
+async function compileLexicon(vaultPath) {
+  const files = await glob(`${LEXICON_DIR}/**/*.md`, { cwd: vaultPath });
+  const entries = [];
+  for (const rel of files) {
+    try {
+      const { data } = matter(await readFile(join(vaultPath, rel), "utf-8"));
+      if (data.type !== "alias" || typeof data.canonical !== "string") continue;
+      const phrases = Array.isArray(data.phrases) ? data.phrases.map(String).map((p) => p.trim()).filter(Boolean) : [];
+      entries.push({
+        canonical: data.canonical,
+        phrases,
+        confidence: ["low", "medium", "high"].includes(data.confidence) ? data.confidence : confidenceFor(1),
+        evidence_count: typeof data.evidence_count === "number" ? data.evidence_count : phrases.length ? 1 : 0,
+        last_used: typeof data.last_used === "string" ? data.last_used : void 0,
+        source: data.source === "authored" ? "authored" : "learned",
+        path: rel
+      });
+    } catch {
+    }
+  }
+  try {
+    const dossiers = await listDossiers(vaultPath);
+    for (const d of dossiers) {
+      if (d.aliases.length === 0) continue;
+      if (entries.some((e) => e.canonical === d.path)) continue;
+      entries.push({
+        canonical: d.path,
+        phrases: d.aliases,
+        confidence: "high",
+        evidence_count: d.aliases.length,
+        source: "authored",
+        path: d.path
+      });
+    }
+  } catch {
+  }
+  try {
+    const dir = deriveSessionDir(vaultPath);
+    await mkdir(dir, { recursive: true });
+    await writeFile(join(dir, CACHE_FILE), JSON.stringify({ compiledAt: (/* @__PURE__ */ new Date()).toISOString(), aliases: entries }, null, 2), "utf-8");
+  } catch {
+  }
+  return entries;
+}
+async function loadLexiconCache(vaultPath) {
+  const cachePath = join(deriveSessionDir(vaultPath), CACHE_FILE);
+  if (existsSync(cachePath)) {
+    try {
+      const data = JSON.parse(await readFile(cachePath, "utf-8"));
+      if (Array.isArray(data?.aliases)) return data.aliases;
+    } catch {
+    }
+  }
+  return compileLexicon(vaultPath);
+}
+function lookupPhrase(aliases, phrase) {
+  const n = normalizePhrase(phrase);
+  return aliases.filter((a) => a.phrases.some((p) => normalizePhrase(p) === n));
+}
+function expandQuery(aliases, query) {
+  const nq = normalizePhrase(query);
+  const matched = aliases.filter((a) => a.phrases.some((p) => p && nq.includes(normalizePhrase(p))));
+  if (matched.length === 0) return { expanded: query, matched: [] };
+  const additions = [...new Set(matched.map((a) => a.canonical))].join(" ");
+  return { expanded: `${query} ${additions}`, matched };
+}
+async function writeAliasNote(vaultPath, rel, entry) {
+  const fm = {
+    type: "alias",
+    canonical: entry.canonical,
+    phrases: entry.phrases,
+    confidence: entry.confidence,
+    evidence_count: entry.evidence_count,
+    last_used: entry.last_used,
+    source: entry.source
+  };
+  const body = `# Alias: ${entry.canonical}
+
+Human phrases that refer to \`${entry.canonical}\`.
+`;
+  const abs = join(vaultPath, rel);
+  await mkdir(dirname(abs), { recursive: true });
+  await writeFile(abs, matter.stringify(body, fm), "utf-8");
+}
+async function addAlias(vaultPath, input) {
+  const existing = await compileLexicon(vaultPath);
+  const match = existing.find((a) => a.canonical === input.canonical);
+  const today = input.today ?? (/* @__PURE__ */ new Date()).toISOString().slice(0, 10);
+  const cleanPhrases = input.phrases.map((p) => p.trim()).filter(Boolean);
+  if (match) {
+    const phrases = [.../* @__PURE__ */ new Set([...match.phrases, ...cleanPhrases])];
+    const evidence_count2 = match.evidence_count + 1;
+    const confidence2 = confidenceFor(evidence_count2);
+    await writeAliasNote(vaultPath, match.path, { ...match, phrases, evidence_count: evidence_count2, confidence: confidence2, last_used: today });
+    await compileLexicon(vaultPath);
+    return { path: match.path, created: false, evidence_count: evidence_count2, confidence: confidence2 };
+  }
+  const rel = join(LEXICON_DIR, `${slugify(input.canonical)}.md`);
+  const evidence_count = 1;
+  const confidence = confidenceFor(evidence_count);
+  await writeAliasNote(vaultPath, rel, {
+    canonical: input.canonical,
+    phrases: cleanPhrases,
+    confidence,
+    evidence_count,
+    last_used: today,
+    source: input.source ?? "learned"
+  });
+  await compileLexicon(vaultPath);
+  return { path: rel, created: true, evidence_count, confidence };
+}
+function findAliasConflicts(aliases) {
+  const byPhrase = /* @__PURE__ */ new Map();
+  for (const a of aliases) {
+    for (const p of a.phrases) {
+      const n = normalizePhrase(p);
+      if (!n) continue;
+      if (!byPhrase.has(n)) byPhrase.set(n, /* @__PURE__ */ new Set());
+      byPhrase.get(n).add(a.canonical);
+    }
+  }
+  const conflicts = [];
+  for (const [phrase, canonicals] of byPhrase) {
+    if (canonicals.size > 1) conflicts.push({ phrase, canonicals: [...canonicals].sort() });
+  }
+  return conflicts.sort((a, b) => a.phrase.localeCompare(b.phrase));
+}
+async function removeAlias(vaultPath, canonical) {
+  const existing = await compileLexicon(vaultPath);
+  const match = existing.find((a) => a.canonical === canonical);
+  if (!match) return false;
+  try {
+    await unlink(join(vaultPath, match.path));
+  } catch {
+    return false;
+  }
+  await compileLexicon(vaultPath);
+  return true;
+}
+
+export {
+  normalizePhrase,
+  slugify,
+  compileLexicon,
+  loadLexiconCache,
+  lookupPhrase,
+  expandQuery,
+  addAlias,
+  findAliasConflicts,
+  removeAlias
+};
+//# sourceMappingURL=chunk-A3KYHKB5.js.map

package/dist/chunk-A3KYHKB5.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/core/lexicon.ts"],"sourcesContent":["import { readFile, writeFile, mkdir, unlink } from \"node:fs/promises\";\nimport { existsSync } from \"node:fs\";\nimport { join, dirname } from \"node:path\";\nimport { glob } from \"glob\";\nimport matter from \"gray-matter\";\nimport { deriveSessionDir } from \"./session.js\";\nimport { listDossiers } from \"./dossier.js\";\n\n/**\n * Lexicon corpus (v1.4 Phase 3) — the learned human→artifact vocabulary.\n *\n * The heart of the human→LLM bridge: maps the human's own phrasing (\"the flaky\n * thing\", \"the deploy dance\") to concrete artifacts (paths / code symbols).\n * Canonical storage is markdown notes of type `alias` under <vault>/lexicon/;\n * a derived JSON cache under .claude/.semantic-memory/ is what the hot-path hook\n * reads for deterministic query expansion.\n */\n\nexport type Confidence = \"low\" | \"medium\" | \"high\";\n\nexport interface AliasEntry {\n  /** The concrete target: a note path or a code symbol/path. */\n  canonical: string;\n  /** The human's actual words that refer to it (verbatim). */\n  phrases: string[];\n  confidence: Confidence;\n  evidence_count: number;\n  last_used?: string;\n  source: \"learned\" | \"authored\";\n  /** The lexicon note path this entry came from. */\n  path: string;\n}\n\nconst CACHE_FILE = \"lexicon-cache.json\";\nconst LEXICON_DIR = \"lexicon\";\n\nexport function normalizePhrase(s: string): string {\n  return s.toLowerCase().trim().replace(/\\s+/g, \" \");\n}\n\nexport function slugify(s: string): string {\n  return s.toLowerCase().replace(/[^a-z0-9]+/g, \"-\").replace(/^-+|-+$/g, \"\").slice(0, 60) || \"alias\";\n}\n\nfunction confidenceFor(evidenceCount: number): Confidence {\n  return evidenceCount >= 3 ? \"high\" : evidenceCount >= 2 ? \"medium\" : \"low\";\n}\n\n/** Read every lexicon note into entries and write the derived cache. */\nexport async function compileLexicon(vaultPath: string): Promise<AliasEntry[]> {\n  const files = await glob(`${LEXICON_DIR}/**/*.md`, { cwd: vaultPath });\n  const entries: AliasEntry[] = [];\n  for (const rel of files) {\n    try {\n      const { data } = matter(await readFile(join(vaultPath, rel), \"utf-8\"));\n      if (data.type !== \"alias\" || typeof data.canonical !== \"string\") continue;\n      const phrases = Array.isArray(data.phrases) ? data.phrases.map(String).map((p) => p.trim()).filter(Boolean) : [];\n      entries.push({\n        canonical: data.canonical,\n        phrases,\n        confidence: ([\"low\", \"medium\", \"high\"] as const).includes(data.confidence) ? data.confidence : confidenceFor(1),\n        evidence_count: typeof data.evidence_count === \"number\" ? data.evidence_count : phrases.length ? 1 : 0,\n        last_used: typeof data.last_used === \"string\" ? data.last_used : undefined,\n        source: data.source === \"authored\" ? \"authored\" : \"learned\",\n        path: rel,\n      });\n    } catch {\n      /* skip unreadable note */\n    }\n  }\n  // Fold in dossier aliases (v1.5 Phase 8): a dossier's `aliases:` are the human's\n  // phrases for that entity, so they become query-expansion bindings pointing at the\n  // dossier note. Authored, not learned — the human named the entity deliberately.\n  // A lexicon note for the same canonical wins (it carries real evidence_count).\n  try {\n    const dossiers = await listDossiers(vaultPath);\n    for (const d of dossiers) {\n      if (d.aliases.length === 0) continue;\n      if (entries.some((e) => e.canonical === d.path)) continue;\n      entries.push({\n        canonical: d.path,\n        phrases: d.aliases,\n        confidence: \"high\",\n        evidence_count: d.aliases.length,\n        source: \"authored\",\n        path: d.path,\n      });\n    }\n  } catch {\n    /* dossiers optional — lexicon compiles fine without them */\n  }\n  try {\n    const dir = deriveSessionDir(vaultPath);\n    await mkdir(dir, { recursive: true });\n    await writeFile(join(dir, CACHE_FILE), JSON.stringify({ compiledAt: new Date().toISOString(), aliases: entries }, null, 2), \"utf-8\");\n  } catch {\n    /* cache write is best-effort */\n  }\n  return entries;\n}\n\n/** Fast read for the hook: use the cache if present, else compile. */\nexport async function loadLexiconCache(vaultPath: string): Promise<AliasEntry[]> {\n  const cachePath = join(deriveSessionDir(vaultPath), CACHE_FILE);\n  if (existsSync(cachePath)) {\n    try {\n      const data = JSON.parse(await readFile(cachePath, \"utf-8\"));\n      if (Array.isArray(data?.aliases)) return data.aliases as AliasEntry[];\n    } catch {\n      /* fall through to recompile */\n    }\n  }\n  return compileLexicon(vaultPath);\n}\n\nexport function lookupPhrase(aliases: AliasEntry[], phrase: string): AliasEntry[] {\n  const n = normalizePhrase(phrase);\n  return aliases.filter((a) => a.phrases.some((p) => normalizePhrase(p) === n));\n}\n\n/**\n * Expand a query by appending the canonical targets of any alias phrases that\n * appear in it. Deterministic, no LLM — this is the Tier-1 hook-time expansion.\n */\nexport function expandQuery(aliases: AliasEntry[], query: string): { expanded: string; matched: AliasEntry[] } {\n  const nq = normalizePhrase(query);\n  const matched = aliases.filter((a) => a.phrases.some((p) => p && nq.includes(normalizePhrase(p))));\n  if (matched.length === 0) return { expanded: query, matched: [] };\n  const additions = [...new Set(matched.map((a) => a.canonical))].join(\" \");\n  return { expanded: `${query} ${additions}`, matched };\n}\n\nasync function writeAliasNote(vaultPath: string, rel: string, entry: Omit<AliasEntry, \"path\">): Promise<void> {\n  const fm = {\n    type: \"alias\",\n    canonical: entry.canonical,\n    phrases: entry.phrases,\n    confidence: entry.confidence,\n    evidence_count: entry.evidence_count,\n    last_used: entry.last_used,\n    source: entry.source,\n  };\n  const body = `# Alias: ${entry.canonical}\\n\\nHuman phrases that refer to \\`${entry.canonical}\\`.\\n`;\n  const abs = join(vaultPath, rel);\n  await mkdir(dirname(abs), { recursive: true });\n  await writeFile(abs, matter.stringify(body, fm), \"utf-8\");\n}\n\n/**\n * Upsert an alias. New canonical → new note (evidence 1). Existing canonical →\n * merge phrases, bump evidence_count, recompute confidence. Recompiles the cache.\n */\nexport async function addAlias(\n  vaultPath: string,\n  input: { canonical: string; phrases: string[]; source?: \"learned\" | \"authored\"; today?: string }\n): Promise<{ path: string; created: boolean; evidence_count: number; confidence: Confidence }> {\n  const existing = await compileLexicon(vaultPath);\n  const match = existing.find((a) => a.canonical === input.canonical);\n  const today = input.today ?? new Date().toISOString().slice(0, 10);\n  const cleanPhrases = input.phrases.map((p) => p.trim()).filter(Boolean);\n\n  if (match) {\n    const phrases = [...new Set([...match.phrases, ...cleanPhrases])];\n    const evidence_count = match.evidence_count + 1;\n    const confidence = confidenceFor(evidence_count);\n    await writeAliasNote(vaultPath, match.path, { ...match, phrases, evidence_count, confidence, last_used: today });\n    await compileLexicon(vaultPath);\n    return { path: match.path, created: false, evidence_count, confidence };\n  }\n\n  const rel = join(LEXICON_DIR, `${slugify(input.canonical)}.md`);\n  const evidence_count = 1;\n  const confidence = confidenceFor(evidence_count);\n  await writeAliasNote(vaultPath, rel, {\n    canonical: input.canonical,\n    phrases: cleanPhrases,\n    confidence,\n    evidence_count,\n    last_used: today,\n    source: input.source ?? \"learned\",\n  });\n  await compileLexicon(vaultPath);\n  return { path: rel, created: true, evidence_count, confidence };\n}\n\nexport interface AliasConflict {\n  phrase: string;\n  canonicals: string[];\n}\n\n/**\n * Find conflicting bindings: the same (normalized) phrase mapping to more than one\n * canonical target. A wrong alias silently misroutes every future query with that\n * phrase, so conflicts are surfaced (never auto-resolved) for a human to fix.\n */\nexport function findAliasConflicts(aliases: AliasEntry[]): AliasConflict[] {\n  const byPhrase = new Map<string, Set<string>>();\n  for (const a of aliases) {\n    for (const p of a.phrases) {\n      const n = normalizePhrase(p);\n      if (!n) continue;\n      if (!byPhrase.has(n)) byPhrase.set(n, new Set());\n      byPhrase.get(n)!.add(a.canonical);\n    }\n  }\n  const conflicts: AliasConflict[] = [];\n  for (const [phrase, canonicals] of byPhrase) {\n    if (canonicals.size > 1) conflicts.push({ phrase, canonicals: [...canonicals].sort() });\n  }\n  return conflicts.sort((a, b) => a.phrase.localeCompare(b.phrase));\n}\n\n/** Remove an alias note by canonical. 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package/dist/{chunk-CYWPDFNI.js → chunk-CSXZ7QUU.js}

@@ -1,7 +1,7 @@
 import {
   loadSchema,
   validateNote
-} from "./chunk-E2Z4J4MK.js";
+} from "./chunk-OWZWMB4P.js";
 
 // src/core/crud.ts
 import { readFile, writeFile, unlink, rename, mkdir } from "fs/promises";
@@ -707,6 +707,7 @@ function buildSynthesizeChangeSet(input) {
     ...input.decision_maker && { decision_maker: input.decision_maker },
     ...input.decided_on && { decided_on: input.decided_on },
     ...input.severity && { severity: input.severity },
+    ...input.symptoms && input.symptoms.length > 0 && { symptoms: input.symptoms },
     ...isProposal && { proposed_target: canonicalPath },
     ...input.extra_frontmatter ?? {}
   };
@@ -917,203 +918,6 @@ async function inspectAgentsContract(projectRoot) {
   return { path, exists: true, has_managed_block: true, local_notes_chars: localTail.length };
 }
 
-// src/core/session.ts
-import { mkdir as mkdir3, readFile as readFile6, writeFile as writeFile6, rm } from "fs/promises";
-import { existsSync as existsSync5 } from "fs";
-import { join as join6 } from "path";
-import { spawn } from "child_process";
-var STALE_THRESHOLD_MS = 24 * 60 * 60 * 1e3;
-var DEFAULT_TIMEOUT_MS = 5 * 60 * 1e3;
-var TAIL_BYTES = 4096;
-var SessionManager = class {
-  constructor(sessionDir) {
-    this.sessionDir = sessionDir;
-  }
-  sessionDir;
-  get sessionPath() {
-    return join6(this.sessionDir, "session.json");
-  }
-  async start(task, opts = {}) {
-    if (!task || task.trim().length === 0) {
-      return { ok: false, error: "session_start requires a non-empty task." };
-    }
-    await mkdir3(this.sessionDir, { recursive: true });
-    const existing = await this.read();
-    if (existing && !existing.closed_at) {
-      const reuseSameTask = opts.reuseSameTask !== false;
-      if (reuseSameTask && existing.task === task) {
-        return { ok: true, id: existing.id, reused: true };
-      }
-      return {
-        ok: false,
-        error: `Session already open: id=${existing.id}, task=${JSON.stringify(existing.task)}. Close it with session_finish first.`
-      };
-    }
-    const now = (/* @__PURE__ */ new Date()).toISOString();
-    const id = `ses_${now.replace(/[:.]/g, "-")}`;
-    const state = {
-      id,
-      task: task.trim(),
-      started_at: now,
-      last_activity_at: now,
-      verifications: [],
-      notes_touched: []
-    };
-    await writeFile6(this.sessionPath, JSON.stringify(state, null, 2), "utf-8");
-    return { ok: true, id };
-  }
-  async status() {
-    const state = await this.read();
-    if (!state || state.closed_at) return { state: "no_session" };
-    const age = Date.now() - new Date(state.last_activity_at).getTime();
-    const label = age > STALE_THRESHOLD_MS ? "stale" : "active";
-    return { ...state, state: label };
-  }
-  async run(cmd, timeoutMs) {
-    const state = await this.read();
-    if (!state || state.closed_at) {
-      return { ok: false, error: "No active session. Run session_start first." };
-    }
-    if (!cmd || cmd.trim().length === 0) {
-      return { ok: false, error: "session_run requires a non-empty command." };
-    }
-    const start = Date.now();
-    const record = await this.spawnAndCapture(cmd, timeoutMs ?? DEFAULT_TIMEOUT_MS);
-    record.duration_ms = Date.now() - start;
-    state.verifications.push(record);
-    state.last_activity_at = (/* @__PURE__ */ new Date()).toISOString();
-    await writeFile6(this.sessionPath, JSON.stringify(state, null, 2), "utf-8");
-    return { ok: true, record };
-  }
-  async finish(input) {
-    const state = await this.read();
-    if (!state || state.closed_at) {
-      return { ok: false, error: "No active session to finish." };
-    }
-    const explicitWaiver = input.verified === false;
-    if (!explicitWaiver && state.verifications.length === 0) {
-      return {
-        ok: false,
-        error: "session_finish refused: no verification commands recorded. Run session_run with a real verification command (tests, lint, etc.) first, OR pass verified=false with a reason to waive verification (e.g. for doc-only edits)."
-      };
-    }
-    if (explicitWaiver && (!input.reason || input.reason.trim().length === 0)) {
-      return {
-        ok: false,
-        error: "session_finish refused: verified=false requires a non-empty `reason` explaining why verification is not applicable to this task."
-      };
-    }
-    if (!input.summary || input.summary.trim().length === 0) {
-      return { ok: false, error: "session_finish requires a non-empty `summary`." };
-    }
-    const closed = {
-      ...state,
-      closed_at: (/* @__PURE__ */ new Date()).toISOString(),
-      closed_summary: input.summary.trim(),
-      ...explicitWaiver && {
-        closed_verified_waived: true,
-        closed_waiver_reason: input.reason.trim()
-      }
-    };
-    await rm(this.sessionPath, { force: true });
-    return { ok: true, closed };
-  }
-  /**
-   * Append paths to notes_touched on the active session, deduplicating. No-op when no
-   * session is active. Used by patch tools to record what the session edited.
-   */
-  async recordNotesTouched(paths) {
-    if (paths.length === 0) return;
-    const state = await this.read();
-    if (!state || state.closed_at) return;
-    const set = new Set(state.notes_touched);
-    for (const p of paths) set.add(p);
-    state.notes_touched = Array.from(set);
-    state.last_activity_at = (/* @__PURE__ */ new Date()).toISOString();
-    await writeFile6(this.sessionPath, JSON.stringify(state, null, 2), "utf-8");
-  }
-  /**
-   * Read the active session WITHOUT computing the stale label. Returns null when no
-   * session is active or when the file is unparseable.
-   */
-  async readActive() {
-    const state = await this.read();
-    if (!state || state.closed_at) return null;
-    return state;
-  }
-  async read() {
-    if (!existsSync5(this.sessionPath)) return null;
-    try {
-      const raw = await readFile6(this.sessionPath, "utf-8");
-      const parsed = JSON.parse(raw);
-      if (typeof parsed?.id !== "string") return null;
-      return parsed;
-    } catch {
-      return null;
-    }
-  }
-  spawnAndCapture(cmd, timeoutMs) {
-    return new Promise((resolve) => {
-      const proc = spawn(cmd, { shell: true });
-      let buf = "";
-      let killedByTimeout = false;
-      const timer = setTimeout(() => {
-        killedByTimeout = true;
-        proc.kill("SIGTERM");
-        setTimeout(() => {
-          try {
-            proc.kill("SIGKILL");
-          } catch {
-          }
-        }, 1e3).unref();
-      }, timeoutMs);
-      const onData = (chunk) => {
-        buf += chunk.toString("utf-8");
-        if (buf.length > TAIL_BYTES * 4) {
-          buf = buf.slice(buf.length - TAIL_BYTES * 2);
-        }
-      };
-      proc.stdout?.on("data", onData);
-      proc.stderr?.on("data", onData);
-      proc.on("close", (code, signal) => {
-        clearTimeout(timer);
-        const tail = buf.slice(-TAIL_BYTES);
-        resolve({
-          cmd,
-          exit: killedByTimeout ? null : code,
-          signal: killedByTimeout ? "SIGTERM (timeout)" : signal ?? null,
-          duration_ms: 0,
-          tail,
-          at: (/* @__PURE__ */ new Date()).toISOString()
-        });
-      });
-      proc.on("error", (err) => {
-        clearTimeout(timer);
-        const tail = buf + `
-[spawn error: ${err.message}]`;
-        resolve({
-          cmd,
-          exit: null,
-          signal: null,
-          duration_ms: 0,
-          tail: tail.slice(-TAIL_BYTES),
-          at: (/* @__PURE__ */ new Date()).toISOString()
-        });
-      });
-    });
-  }
-};
-function deriveProjectRoot(notesPath) {
-  const norm = notesPath.replace(/[\\/]+$/, "");
-  if (norm.endsWith("/.claude/.vault") || norm.endsWith("\\.claude\\.vault")) {
-    return norm.slice(0, -".claude/.vault".length).replace(/[\\/]+$/, "");
-  }
-  return norm;
-}
-function deriveSessionDir(notesPath) {
-  return join6(deriveProjectRoot(notesPath), ".claude", ".semantic-memory");
-}
-
 export {
   NoteCrud,
   FrontmatterManager,
@@ -1128,9 +932,6 @@ export {
   buildSynthesizeChangeSet,
   buildPromoteChangeSet,
   regenerateAgentsContract,
-  inspectAgentsContract,
-  SessionManager,
-  deriveProjectRoot,
-  deriveSessionDir
+  inspectAgentsContract
 };
-//# sourceMappingURL=chunk-CYWPDFNI.js.map
+//# sourceMappingURL=chunk-CSXZ7QUU.js.map

package/dist/chunk-CSXZ7QUU.js.map

@@ -0,0 +1 @@
+{"version":3,"sources":["../src/core/crud.ts","../src/core/frontmatter.ts","../src/core/watcher.ts","../src/core/ingest.ts","../src/core/index-regen.ts","../src/core/patch.ts","../src/core/synthesize.ts","../src/core/agents-contract.ts"],"sourcesContent":["import { readFile, writeFile, unlink, rename, mkdir } from \"node:fs/promises\";\nimport { dirname, join, relative } from \"node:path\";\nimport { existsSync } from \"node:fs\";\nimport { glob } from \"glob\";\nimport matter from \"gray-matter\";\nimport type { UpdateNoteOptions } from \"./types.js\";\n\nexport class NoteCrud {\n  private notesPath: string;\n\n  constructor(notesPath: string) {\n    this.notesPath = notesPath;\n  }\n\n  async create(\n    relativePath: string,\n    content: string,\n    frontmatter?: Record<string, unknown>\n  ): Promise<string> {\n    const absPath = join(this.notesPath, relativePath);\n    if (existsSync(absPath)) {\n      throw new Error(`Note already exists: ${relativePath}`);\n    }\n\n    await mkdir(dirname(absPath), { recursive: true });\n\n    // Merge auto-stamps with caller-supplied frontmatter (caller wins on conflicts)\n    const stamps = computeStamps(content);\n    const merged = { ...stamps, ...(frontmatter ?? {}) };\n    const fileContent = matter.stringify(content, merged);\n\n    await writeFile(absPath, fileContent, \"utf-8\");\n    return relativePath;\n  }\n\n  async read(relativePath: string): Promise<string> {\n    const absPath = join(this.notesPath, relativePath);\n    return readFile(absPath, \"utf-8\");\n  }\n\n  async readMultiple(paths: string[]): Promise<Map<string, string>> {\n    const results = new Map<string, string>();\n    await Promise.all(\n      paths.map(async (p) => {\n        try {\n          const content = await this.read(p);\n          results.set(p, content);\n        } catch {\n          results.set(p, `[Error: could not read ${p}]`);\n        }\n      })\n    );\n    return results;\n  }\n\n  async update(\n    relativePath: string,\n    content: string,\n    options: UpdateNoteOptions\n  ): Promise<void> {\n    const absPath = join(this.notesPath, relativePath);\n    if (!existsSync(absPath)) {\n      throw new Error(`Note does not exist: ${relativePath}`);\n    }\n\n    const existing = await readFile(absPath, \"utf-8\");\n\n    let updated: string;\n\n    switch (options.mode) {\n      case \"overwrite\":\n        updated = content;\n        break;\n\n      case \"append\":\n        updated = existing + \"\\n\" + content;\n        break;\n\n      case \"prepend\": {\n        const { data, content: body } = matter(existing);\n        const newBody = content + \"\\n\" + body;\n        updated = Object.keys(data).length > 0 ? matter.stringify(newBody, data) : newBody;\n        break;\n      }\n\n      case \"patch-by-heading\": {\n        if (!options.heading) throw new Error(\"patch-by-heading requires a heading\");\n        updated = this.patchByHeading(existing, options.heading, content);\n        break;\n      }\n    }\n\n    // Re-parse the final content and inject updated stamps\n    // (preserves all existing frontmatter, only overwrites the three auto fields)\n    const { data: existingFm, content: body } = matter(updated);\n    const stamps = computeStamps(body);\n    const newFm = { ...existingFm, ...stamps };\n    await writeFile(absPath, matter.stringify(body, newFm), \"utf-8\");\n  }\n\n  async delete(relativePath: string): Promise<void> {\n    const absPath = join(this.notesPath, relativePath);\n    if (!existsSync(absPath)) {\n      throw new Error(`Note does not exist: ${relativePath}`);\n    }\n    await unlink(absPath);\n  }\n\n  async move(fromPath: string, toPath: string): Promise<void> {\n    const absFrom = join(this.notesPath, fromPath);\n    const absTo = join(this.notesPath, toPath);\n\n    if (!existsSync(absFrom)) {\n      throw new Error(`Note does not exist: ${fromPath}`);\n    }\n    if (existsSync(absTo)) {\n      throw new Error(`Destination already exists: ${toPath}`);\n    }\n\n    await mkdir(dirname(absTo), { recursive: true });\n    await rename(absFrom, absTo);\n\n    // Update wikilinks in other files that reference the old path\n    await this.updateWikilinksAfterMove(fromPath, toPath);\n  }\n\n  private async updateWikilinksAfterMove(\n    oldPath: string,\n    newPath: string\n  ): Promise<void> {\n    const oldName = oldPath.replace(/\\.md$/, \"\").split(\"/\").pop()!;\n    const newName = newPath.replace(/\\.md$/, \"\").split(\"/\").pop()!;\n\n    if (oldName === newName) return;\n\n    const files = await glob(\"**/*.md\", { cwd: this.notesPath });\n\n    for (const file of files) {\n      const absPath = join(this.notesPath, file);\n      const content = await readFile(absPath, \"utf-8\");\n\n      const pattern = new RegExp(`\\\\[\\\\[${escapeRegex(oldName)}(\\\\|[^\\\\]]*)?\\\\]\\\\]`, \"g\");\n      if (!pattern.test(content)) continue;\n\n      const updated = content.replace(pattern, `[[${newName}$1]]`);\n      await writeFile(absPath, updated, \"utf-8\");\n    }\n  }\n\n  private patchByHeading(\n    content: string,\n    heading: string,\n    newContent: string\n  ): string {\n    const lines = content.split(\"\\n\");\n    const headingPattern = new RegExp(`^#{1,6}\\\\s+${escapeRegex(heading)}\\\\s*$`, \"i\");\n\n    let headingIndex = -1;\n    let headingLevel = 0;\n\n    for (let i = 0; i < lines.length; i++) {\n      if (headingPattern.test(lines[i])) {\n        headingIndex = i;\n        const match = lines[i].match(/^(#{1,6})\\s+/);\n        headingLevel = match ? match[1].length : 1;\n        break;\n      }\n    }\n\n    if (headingIndex === -1) {\n      throw new Error(`Heading not found: ${heading}`);\n    }\n\n    // Find the end of this section (next heading of same or higher level)\n    let endIndex = lines.length;\n    for (let i = headingIndex + 1; i < lines.length; i++) {\n      const match = lines[i].match(/^(#{1,6})\\s+/);\n      if (match && match[1].length <= headingLevel) {\n        endIndex = i;\n        break;\n      }\n    }\n\n    const before = lines.slice(0, headingIndex + 1);\n    const after = lines.slice(endIndex);\n\n    return [...before, \"\", newContent, \"\", ...after].join(\"\\n\");\n  }\n}\n\nfunction escapeRegex(str: string): string {\n  return str.replace(/[.*+?^${}()|[\\]\\\\]/g, \"\\\\$&\");\n}\n\n/**\n * Compute the three auto-stamp fields from note body text.\n * These are always factual/computable — no editorial judgment required.\n * - last_updated: today's date (YYYY-MM-DD)\n * - word_count: whitespace-separated token count\n * - estimated_read_time: assumes ~200 wpm average reading speed\n */\nfunction computeStamps(body: string): Record<string, unknown> {\n  const today = new Date().toISOString().slice(0, 10); // YYYY-MM-DD\n  const wordCount = body.trim() ? body.trim().split(/\\s+/).length : 0;\n  const minutes = Math.max(1, Math.ceil(wordCount / 200));\n  return {\n    last_updated: today,\n    word_count: wordCount,\n    estimated_read_time: `${minutes} min read`,\n  };\n}\n","import { readFile, writeFile } from \"node:fs/promises\";\nimport { join } from \"node:path\";\nimport { glob } from \"glob\";\nimport matter from \"gray-matter\";\n\nexport class FrontmatterManager {\n  private notesPath: string;\n\n  constructor(notesPath: string) {\n    this.notesPath = notesPath;\n  }\n\n  async get(relativePath: string): Promise<Record<string, unknown>> {\n    const absPath = join(this.notesPath, relativePath);\n    const raw = await readFile(absPath, \"utf-8\");\n    const { data } = matter(raw);\n    return data;\n  }\n\n  async update(\n    relativePath: string,\n    fields: Record<string, unknown>\n  ): Promise<void> {\n    const absPath = join(this.notesPath, relativePath);\n    const raw = await readFile(absPath, \"utf-8\");\n    const { data, content } = matter(raw);\n\n    for (const [key, value] of Object.entries(fields)) {\n      if (value === null || value === undefined) {\n        delete data[key];\n      } else {\n        data[key] = value;\n      }\n    }\n\n    const updated = matter.stringify(content, data);\n    await writeFile(absPath, updated, \"utf-8\");\n  }\n}\n\nexport class TagManager {\n  private notesPath: string;\n\n  constructor(notesPath: string) {\n    this.notesPath = notesPath;\n  }\n\n  async list(relativePath: string): Promise<string[]> {\n    const absPath = join(this.notesPath, relativePath);\n    const raw = await readFile(absPath, \"utf-8\");\n    const { data, content } = matter(raw);\n\n    const fmTags = Array.isArray(data.tags) ? (data.tags as string[]) : [];\n    const inlineTags = [...content.matchAll(/(?:^|\\s)#([a-zA-Z][\\w-/]*)/g)].map(\n      (m) => m[1]\n    );\n\n    return [...new Set([...fmTags, ...inlineTags])];\n  }\n\n  async add(relativePath: string, tags: string[]): Promise<void> {\n    const absPath = join(this.notesPath, relativePath);\n    const raw = await readFile(absPath, \"utf-8\");\n    const { data, content } = matter(raw);\n\n    const existing = Array.isArray(data.tags) ? (data.tags as string[]) : [];\n    const merged = [...new Set([...existing, ...tags])];\n    data.tags = merged;\n\n    const updated = matter.stringify(content, data);\n    await writeFile(absPath, updated, \"utf-8\");\n  }\n\n  async remove(relativePath: string, tags: string[]): Promise<void> {\n    const absPath = join(this.notesPath, relativePath);\n    const raw = await readFile(absPath, \"utf-8\");\n    const { data, content } = matter(raw);\n\n    // Remove from frontmatter\n    if (Array.isArray(data.tags)) {\n      data.tags = (data.tags as string[]).filter((t) => !tags.includes(t));\n    }\n\n    // Remove inline tags\n    let updatedContent = content;\n    for (const tag of tags) {\n      const pattern = new RegExp(`(^|\\\\s)#${escapeRegex(tag)}(?=\\\\s|$)`, \"g\");\n      updatedContent = updatedContent.replace(pattern, \"$1\");\n    }\n\n    const updated = matter.stringify(updatedContent, data);\n    await writeFile(absPath, updated, \"utf-8\");\n  }\n\n  async renameVaultWide(oldTag: string, newTag: string): Promise<number> {\n    const files = await glob(\"**/*.md\", { cwd: this.notesPath });\n    let count = 0;\n\n    for (const file of files) {\n      const absPath = join(this.notesPath, file);\n      const raw = await readFile(absPath, \"utf-8\");\n      const { data, content } = matter(raw);\n      let changed = false;\n\n      // Rename in frontmatter\n      if (Array.isArray(data.tags)) {\n        const idx = (data.tags as string[]).indexOf(oldTag);\n        if (idx >= 0) {\n          (data.tags as string[])[idx] = newTag;\n          changed = true;\n        }\n      }\n\n      // Rename inline tags\n      const pattern = new RegExp(`(^|\\\\s)#${escapeRegex(oldTag)}(?=\\\\s|$)`, \"g\");\n      const updatedContent = content.replace(pattern, `$1#${newTag}`);\n      if (updatedContent !== content) changed = true;\n\n      if (changed) {\n        const updated = matter.stringify(updatedContent, data);\n        await writeFile(absPath, updated, \"utf-8\");\n        count++;\n      }\n    }\n\n    return count;\n  }\n}\n\nfunction escapeRegex(str: string): string {\n  return str.replace(/[.*+?^${}()|[\\]\\\\]/g, \"\\\\$&\");\n}\n","import { watch, type FSWatcher } from \"chokidar\";\nimport { EventEmitter } from \"node:events\";\n\nexport interface WatcherEvents {\n  changed: (paths: string[]) => void;\n  error: (error: Error) => void;\n}\n\nexport class Watcher extends EventEmitter {\n  private notesPath: string;\n  private fsWatcher: FSWatcher | null = null;\n  private debounceMs: number;\n  private pendingChanges = new Set<string>();\n  private debounceTimer: ReturnType<typeof setTimeout> | null = null;\n  private readyPromise: Promise<void> | null = null;\n  private usePolling: boolean;\n\n  constructor(notesPath: string, debounceMs: number = 500, usePolling: boolean = false) {\n    super();\n    this.notesPath = notesPath;\n    this.debounceMs = debounceMs;\n    this.usePolling = usePolling;\n  }\n\n  start(): void {\n    if (this.fsWatcher) return;\n\n    this.fsWatcher = watch(\"**/*.md\", {\n      cwd: this.notesPath,\n      ignoreInitial: true,\n      followSymlinks: true,\n      ignored: [\n        \"**/node_modules/**\",\n        \"**/.semantic-sidekick-index/**\",\n        \"**/.git/**\",\n      ],\n      ...(this.usePolling ? { usePolling: true, interval: 100 } : {}),\n    });\n\n    this.readyPromise = new Promise<void>((resolve) => {\n      this.fsWatcher!.on(\"ready\", resolve);\n    });\n\n    this.fsWatcher.on(\"add\", (path) => this.enqueue(path));\n    this.fsWatcher.on(\"change\", (path) => this.enqueue(path));\n    this.fsWatcher.on(\"unlink\", (path) => this.enqueue(path));\n    this.fsWatcher.on(\"error\", (err) => this.emit(\"error\", err));\n  }\n\n  async ready(): Promise<void> {\n    if (this.readyPromise) await this.readyPromise;\n  }\n\n  stop(): void {\n    if (this.debounceTimer) clearTimeout(this.debounceTimer);\n    this.fsWatcher?.close();\n    this.fsWatcher = null;\n    this.pendingChanges.clear();\n  }\n\n  private enqueue(path: string): void {\n    this.pendingChanges.add(path);\n\n    if (this.debounceTimer) clearTimeout(this.debounceTimer);\n    this.debounceTimer = setTimeout(() => {\n      const paths = [...this.pendingChanges];\n      this.pendingChanges.clear();\n      this.emit(\"changed\", paths);\n    }, this.debounceMs);\n  }\n}\n","import { basename } from \"node:path\";\nimport type { ChangeSet, PatchCreate } from \"./patch.js\";\n\nexport interface IngestSource {\n  /** Identifier of the source — URL, filesystem path, DOI, ISBN, etc. */\n  source_uri: string;\n  /** Human-readable title for the source-note's frontmatter */\n  source_title: string;\n  /** One of the schema types; typically \"source\" */\n  source_type?: string;\n  /** Path under the vault to write the source-note. Defaults to `sources/<slug>.md`. */\n  source_path?: string;\n  /** Free-form body for the source-note (summary, abstract, your notes on it) */\n  source_summary?: string;\n  /** Tags for the source-note */\n  source_tags?: string[];\n}\n\nexport interface IngestUnit {\n  /** Path under the vault where this extracted note should live */\n  path: string;\n  /** Note title — if absent, derived from basename */\n  title?: string;\n  /** Note body — markdown */\n  content: string;\n  /** Schema type. Default: \"note\". */\n  type?: string;\n  /** Additional wikilink-style derived_from targets beyond the source-note */\n  extra_derived_from?: string[];\n  /** Additional free-form frontmatter fields */\n  extra_frontmatter?: Record<string, unknown>;\n  /** Per-unit confidence override */\n  confidence?: string;\n}\n\nexport interface IngestInput {\n  source: IngestSource;\n  units: IngestUnit[];\n  /** If true, the existing source-note is updated if present; else an error is raised */\n  allow_existing_source?: boolean;\n}\n\nexport interface IngestPreview {\n  changeset: ChangeSet;\n  sourcePath: string;\n  unitPaths: string[];\n}\n\n/**\n * Build a ChangeSet for ingesting a source into the vault.\n *\n * Shape: one create for the source-note (type=source) + one create per unit,\n * each stamped with `derived_from: [<source-path>]` so lint.missing_provenance\n * is satisfied automatically and the graph reflects the provenance edge.\n *\n * Intentionally does NOT touch the filesystem — callers route the result\n * through applyPatch for atomicity, validation, and rollback.\n */\nexport function buildIngestChangeSet(input: IngestInput): IngestPreview {\n  const today = new Date().toISOString().slice(0, 10);\n  const sourcePath = input.source.source_path ?? defaultSourcePath(input.source);\n\n  const sourceNote: PatchCreate = {\n    path: sourcePath,\n    content: buildSourceBody(input.source),\n    frontmatter: {\n      title: input.source.source_title,\n      type: input.source.source_type ?? \"source\",\n      status: \"active\",\n      source: input.source.source_uri,\n      last_verified: today,\n      confidence: \"high\",\n      ...(input.source.source_tags && input.source.source_tags.length > 0 && { tags: input.source.source_tags }),\n    },\n  };\n\n  const unitCreates: PatchCreate[] = input.units.map((u) => {\n    const title = u.title ?? titleFromPath(u.path);\n    const derivedFrom = [sourcePath, ...(u.extra_derived_from ?? [])];\n    return {\n      path: u.path.endsWith(\".md\") ? u.path : u.path + \".md\",\n      content: u.content.startsWith(\"#\") ? u.content : `# ${title}\\n\\n${u.content.trim()}\\n`,\n      frontmatter: {\n        title,\n        type: u.type ?? \"note\",\n        status: \"active\",\n        derived_from: derivedFrom,\n        last_verified: today,\n        confidence: u.confidence ?? \"medium\",\n        ...(u.extra_frontmatter ?? {}),\n      },\n    };\n  });\n\n  return {\n    changeset: { creates: [sourceNote, ...unitCreates] },\n    sourcePath,\n    unitPaths: unitCreates.map((c) => c.path),\n  };\n}\n\nfunction buildSourceBody(source: IngestSource): string {\n  const lines = [`# ${source.source_title}`, \"\", `**Source:** ${source.source_uri}`, \"\"];\n  if (source.source_summary) {\n    lines.push(source.source_summary.trim(), \"\");\n  } else {\n    lines.push(\"_Summary not provided — fill in when referencing this source._\", \"\");\n  }\n  return lines.join(\"\\n\");\n}\n\nfunction defaultSourcePath(source: IngestSource): string {\n  const slug = slugify(source.source_title);\n  return `sources/${slug}.md`;\n}\n\nfunction titleFromPath(p: string): string {\n  return basename(p).replace(/\\.md$/, \"\").replace(/[-_]/g, \" \");\n}\n\nfunction slugify(s: string): string {\n  return s\n    .toLowerCase()\n    .replace(/[^\\w\\s-]/g, \"\")\n    .replace(/\\s+/g, \"-\")\n    .replace(/-+/g, \"-\")\n    .replace(/^-|-$/g, \"\")\n    .slice(0, 80);\n}\n","import { readdir, readFile, writeFile, stat } from \"node:fs/promises\";\nimport { existsSync } from \"node:fs\";\nimport { join, dirname, basename, sep } from \"node:path\";\nimport matter from \"gray-matter\";\n\nexport const INDEX_FILE = \"INDEX.md\";\nexport const INDEX_OVERFLOW_THRESHOLD = 100; // entries before we warn about splitting\n\nexport interface IndexEntry {\n  path: string; // relative to the directory\n  title: string;\n  summary?: string;\n}\n\nexport interface RegenResult {\n  directory: string;\n  indexPath: string;\n  entryCount: number;\n  overflowed: boolean;\n  wrote: boolean;\n}\n\n/**\n * Regenerate INDEX.md for a single vault directory.\n * Lists every *.md file in the directory (non-recursive, excluding the index itself)\n * with its title (frontmatter or first heading) and optional summary (from frontmatter\n * `purpose` or first non-heading paragraph).\n */\nexport async function regenDirectoryIndex(vaultPath: string, dirRel: string): Promise<RegenResult> {\n  const absDir = join(vaultPath, dirRel);\n  const indexPath = join(absDir, INDEX_FILE);\n  const relIndex = join(dirRel, INDEX_FILE);\n\n  if (!existsSync(absDir)) {\n    return { directory: dirRel, indexPath: relIndex, entryCount: 0, overflowed: false, wrote: false };\n  }\n\n  const files = (await readdir(absDir)).filter(\n    (f) => f.endsWith(\".md\") && f !== INDEX_FILE && f !== \"README.md\"\n  );\n\n  const entries: IndexEntry[] = [];\n  for (const f of files) {\n    const full = join(absDir, f);\n    try {\n      const st = await stat(full);\n      if (!st.isFile()) continue;\n      const raw = await readFile(full, \"utf-8\");\n      const { data, content } = matter(raw);\n      const title = typeof data.title === \"string\" ? data.title : firstHeading(content) ?? basenameNoExt(f);\n      const summary = typeof data.purpose === \"string\" ? data.purpose : firstParagraph(content);\n      entries.push({ path: f, title, summary });\n    } catch {\n      /* skip unreadable */\n    }\n  }\n\n  entries.sort((a, b) => a.title.localeCompare(b.title));\n  const body = renderIndex(dirRel, entries);\n  const overflowed = entries.length > INDEX_OVERFLOW_THRESHOLD;\n\n  let wrote = false;\n  if (existsSync(indexPath)) {\n    const current = await readFile(indexPath, \"utf-8\");\n    if (current !== body) {\n      await writeFile(indexPath, body, \"utf-8\");\n      wrote = true;\n    }\n  } else {\n    await writeFile(indexPath, body, \"utf-8\");\n    wrote = true;\n  }\n\n  return { directory: dirRel, indexPath: relIndex, entryCount: entries.length, overflowed, wrote };\n}\n\n/**\n * Regenerate indexes for every directory affected by a set of paths.\n * Walks up the parent chain for each input so a deep change at\n * `a/b/c/note.md` regenerates `a/b/c/INDEX.md`. Does NOT recurse further —\n * `a/b/INDEX.md` stays as-is unless a path under `a/b/` (not `a/b/c/`)\n * also changed.\n */\nexport async function regenIndexesForPaths(\n  vaultPath: string,\n  paths: string[]\n): Promise<RegenResult[]> {\n  const dirs = new Set<string>();\n  for (const p of paths) {\n    const d = dirname(p);\n    if (d === \".\" || d === \"/\") continue;\n    dirs.add(d);\n  }\n  const results: RegenResult[] = [];\n  for (const d of dirs) {\n    results.push(await regenDirectoryIndex(vaultPath, d));\n  }\n  return results;\n}\n\nfunction renderIndex(dirRel: string, entries: IndexEntry[]): string {\n  const header = `# ${toTitle(dirRel)} Index\\n\\n> Auto-generated by semantic-sidekick. Changes are overwritten on apply_patch. Add prose to per-note files, not here.\\n\\n`;\n  if (entries.length === 0) return header + \"_No notes in this directory yet._\\n\";\n  const overflowNote =\n    entries.length > INDEX_OVERFLOW_THRESHOLD\n      ? `> ⚠️  ${entries.length} entries — consider splitting this directory into subfolders (threshold: ${INDEX_OVERFLOW_THRESHOLD}).\\n\\n`\n      : \"\";\n  const lines = entries.map((e) => {\n    const linkText = e.title;\n    const target = e.path.replace(/\\.md$/, \"\");\n    const summary = e.summary ? ` — ${truncate(e.summary, 140)}` : \"\";\n    return `- [${linkText}](./${e.path}) — \\`[[${target}]]\\`${summary}`;\n  });\n  return header + overflowNote + lines.join(\"\\n\") + \"\\n\";\n}\n\nfunction toTitle(dirRel: string): string {\n  return dirRel\n    .split(sep)\n    .pop()!\n    .replace(/[-_]/g, \" \")\n    .replace(/\\b\\w/g, (c) => c.toUpperCase());\n}\n\nfunction basenameNoExt(p: string): string {\n  return basename(p).replace(/\\.md$/, \"\");\n}\n\nfunction firstHeading(content: string): string | null {\n  const m = content.match(/^\\s*#{1,6}\\s+(.+)$/m);\n  return m ? m[1].trim() : null;\n}\n\nfunction firstParagraph(content: string): string | undefined {\n  // Skip leading headings, then take the first line of non-heading text\n  const lines = content.split(\"\\n\");\n  for (const line of lines) {\n    const trimmed = line.trim();\n    if (!trimmed) continue;\n    if (trimmed.startsWith(\"#\")) continue;\n    if (trimmed.startsWith(\">\")) continue;\n    if (trimmed.startsWith(\"```\")) continue;\n    return trimmed.replace(/\\s+/g, \" \");\n  }\n  return undefined;\n}\n\nfunction truncate(s: string, n: number): string {\n  return s.length <= n ? s : s.slice(0, n - 1).trimEnd() + \"…\";\n}\n","import { readFile, writeFile, unlink, rename, mkdir } from \"node:fs/promises\";\nimport { existsSync } from \"node:fs\";\nimport { dirname, join } from \"node:path\";\nimport matter from \"gray-matter\";\nimport type { UpdateNoteOptions } from \"./types.js\";\nimport { NoteCrud } from \"./crud.js\";\nimport { loadSchema, validateNote, type LintFinding, type VaultSchema } from \"./schema.js\";\nimport { regenIndexesForPaths, type RegenResult } from \"./index-regen.js\";\n\nexport interface PatchCreate {\n  path: string;\n  content: string;\n  frontmatter?: Record<string, unknown>;\n}\n\nexport interface PatchUpdate {\n  path: string;\n  content: string;\n  mode: UpdateNoteOptions[\"mode\"];\n  heading?: string;\n}\n\nexport interface PatchDelete {\n  path: string;\n}\n\nexport interface PatchMove {\n  from: string;\n  to: string;\n}\n\nexport interface ChangeSet {\n  creates?: PatchCreate[];\n  updates?: PatchUpdate[];\n  deletes?: PatchDelete[];\n  moves?: PatchMove[];\n}\n\nexport interface ApplyPatchOptions {\n  dryRun?: boolean;\n  validate?: boolean;\n  allowLintWarnings?: boolean;\n  /** Regenerate INDEX.md in directories touched by this patch. Default: true. */\n  regenIndexes?: boolean;\n}\n\nexport interface AppliedOp {\n  op: \"create\" | \"update\" | \"delete\" | \"move\";\n  path: string;\n}\n\nexport interface ApplyPatchResult {\n  ok: boolean;\n  applied: AppliedOp[];\n  rolledBack: AppliedOp[];\n  lint: LintFinding[];\n  errors: string[];\n  /** Index files regenerated as a side-effect. Empty if regenIndexes=false or dry-run. */\n  indexes_regenerated?: RegenResult[];\n}\n\ninterface Snapshot {\n  op: \"create\" | \"update\" | \"delete\" | \"move\";\n  path: string;\n  absPath: string;\n  prevContent?: string; // for update/delete/move(from)\n  prevAbsPath?: string; // for move (prev location)\n}\n\n/**\n * Atomic multi-note patch with rollback. Applies creates → updates → moves → deletes\n * in that order. If any op fails, all successful ops before it are reverted in reverse.\n *\n * In dry-run mode, nothing is written; the result describes what would have happened,\n * including lint findings on the proposed state.\n */\nexport async function applyPatch(\n  notesPath: string,\n  changeset: ChangeSet,\n  options: ApplyPatchOptions = {}\n): Promise<ApplyPatchResult> {\n  const validate = options.validate !== false;\n  const dryRun = options.dryRun === true;\n  const allowWarn = options.allowLintWarnings !== false;\n\n  const errors: string[] = [];\n  const lint: LintFinding[] = [];\n  const applied: AppliedOp[] = [];\n  const snapshots: Snapshot[] = [];\n\n  const crud = new NoteCrud(notesPath);\n\n  let schema: VaultSchema | null = null;\n  if (validate) {\n    try {\n      schema = await loadSchema(notesPath);\n    } catch (e) {\n      errors.push(`failed to load schema: ${e instanceof Error ? e.message : String(e)}`);\n      return { ok: false, applied, rolledBack: [], lint, errors };\n    }\n  }\n\n  // Pre-check: collisions on creates, missing sources on updates/deletes/moves.\n  for (const c of changeset.creates ?? []) {\n    if (existsSync(join(notesPath, c.path))) {\n      errors.push(`create: already exists: ${c.path}`);\n    }\n  }\n  for (const u of changeset.updates ?? []) {\n    if (!existsSync(join(notesPath, u.path))) {\n      errors.push(`update: does not exist: ${u.path}`);\n    }\n  }\n  for (const d of changeset.deletes ?? []) {\n    if (!existsSync(join(notesPath, d.path))) {\n      errors.push(`delete: does not exist: ${d.path}`);\n    }\n  }\n  for (const m of changeset.moves ?? []) {\n    if (!existsSync(join(notesPath, m.from))) {\n      errors.push(`move: source does not exist: ${m.from}`);\n    }\n    if (existsSync(join(notesPath, m.to))) {\n      errors.push(`move: destination exists: ${m.to}`);\n    }\n  }\n\n  if (errors.length > 0) {\n    return { ok: false, applied, rolledBack: [], lint, errors };\n  }\n\n  // Lint pre-flight on proposed state. Simulate each create/update and validate.\n  if (validate && schema) {\n    for (const c of changeset.creates ?? []) {\n      const proposed = matter.stringify(c.content, c.frontmatter ?? {});\n      lint.push(...validateNote(c.path, proposed, schema));\n    }\n    for (const u of changeset.updates ?? []) {\n      const abs = join(notesPath, u.path);\n      let proposed: string;\n      try {\n        const existing = await readFile(abs, \"utf-8\");\n        proposed = applyUpdateInMemory(existing, u);\n      } catch (e) {\n        errors.push(`update precheck: ${u.path}: ${e instanceof Error ? e.message : String(e)}`);\n        continue;\n      }\n      lint.push(...validateNote(u.path, proposed, schema));\n    }\n\n    const schemaErrors = lint.filter((f) => f.rule === \"schema_violations\" && f.severity === \"error\");\n    if (schemaErrors.length > 0) {\n      errors.push(`${schemaErrors.length} schema violation(s) blocked the patch`);\n    }\n    if (!allowWarn) {\n      const warns = lint.filter((f) => f.severity === \"warn\");\n      if (warns.length > 0) errors.push(`${warns.length} lint warning(s) blocked the patch (allowLintWarnings=false)`);\n    }\n  }\n\n  if (errors.length > 0 || dryRun) {\n    return { ok: errors.length === 0, applied, rolledBack: [], lint, errors };\n  }\n\n  // Execute — capture snapshots as we go so rollback can reverse.\n  try {\n    for (const c of changeset.creates ?? []) {\n      const abs = join(notesPath, c.path);\n      await crud.create(c.path, c.content, c.frontmatter);\n      snapshots.push({ op: \"create\", path: c.path, absPath: abs });\n      applied.push({ op: \"create\", path: c.path });\n    }\n    for (const u of changeset.updates ?? []) {\n      const abs = join(notesPath, u.path);\n      const prev = await readFile(abs, \"utf-8\");\n      await crud.update(u.path, u.content, { mode: u.mode, heading: u.heading } as UpdateNoteOptions);\n      snapshots.push({ op: \"update\", path: u.path, absPath: abs, prevContent: prev });\n      applied.push({ op: \"update\", path: u.path });\n    }\n    for (const m of changeset.moves ?? []) {\n      await crud.move(m.from, m.to);\n      snapshots.push({\n        op: \"move\",\n        path: m.to,\n        absPath: join(notesPath, m.to),\n        prevAbsPath: join(notesPath, m.from),\n      });\n      applied.push({ op: \"move\", path: `${m.from} -> ${m.to}` });\n    }\n    for (const d of changeset.deletes ?? []) {\n      const abs = join(notesPath, d.path);\n      const prev = await readFile(abs, \"utf-8\");\n      await crud.delete(d.path);\n      snapshots.push({ op: \"delete\", path: d.path, absPath: abs, prevContent: prev });\n      applied.push({ op: \"delete\", path: d.path });\n    }\n  } catch (e) {\n    errors.push(`op failed: ${e instanceof Error ? e.message : String(e)} — rolling back`);\n    const rolledBack = await rollback(snapshots);\n    return { ok: false, applied, rolledBack, lint, errors };\n  }\n\n  let indexes_regenerated: RegenResult[] = [];\n  if (options.regenIndexes !== false) {\n    const touched = [\n      ...(changeset.creates ?? []).map((c) => c.path),\n      ...(changeset.deletes ?? []).map((d) => d.path),\n      ...(changeset.moves ?? []).flatMap((m) => [m.from, m.to]),\n    ];\n    try {\n      indexes_regenerated = await regenIndexesForPaths(notesPath, touched);\n    } catch (e) {\n      // Non-fatal: patch succeeded; index regen is a best-effort side effect.\n      errors.push(`index regen failed (patch still applied): ${e instanceof Error ? e.message : String(e)}`);\n    }\n  }\n\n  return { ok: true, applied, rolledBack: [], lint, errors, indexes_regenerated };\n}\n\nasync function rollback(snapshots: Snapshot[]): Promise<AppliedOp[]> {\n  const reverted: AppliedOp[] = [];\n  for (const s of snapshots.slice().reverse()) {\n    try {\n      switch (s.op) {\n        case \"create\":\n          if (existsSync(s.absPath)) await unlink(s.absPath);\n          reverted.push({ op: \"create\", path: s.path });\n          break;\n        case \"update\":\n          if (s.prevContent !== undefined) {\n            await writeFile(s.absPath, s.prevContent, \"utf-8\");\n          }\n          reverted.push({ op: \"update\", path: s.path });\n          break;\n        case \"delete\":\n          if (s.prevContent !== undefined) {\n            await mkdir(dirname(s.absPath), { recursive: true });\n            await writeFile(s.absPath, s.prevContent, \"utf-8\");\n          }\n          reverted.push({ op: \"delete\", path: s.path });\n          break;\n        case \"move\":\n          if (s.prevAbsPath && existsSync(s.absPath)) {\n            await mkdir(dirname(s.prevAbsPath), { recursive: true });\n            await rename(s.absPath, s.prevAbsPath);\n          }\n          reverted.push({ op: \"move\", path: s.path });\n          break;\n      }\n    } catch {\n      // swallow — best-effort rollback\n    }\n  }\n  return reverted;\n}\n\nfunction applyUpdateInMemory(existing: string, u: PatchUpdate): string {\n  switch (u.mode) {\n    case \"overwrite\":\n      return u.content;\n    case \"append\":\n      return existing + \"\\n\" + u.content;\n    case \"prepend\": {\n      const { data, content: body } = matter(existing);\n      const newBody = u.content + \"\\n\" + body;\n      return Object.keys(data).length > 0 ? matter.stringify(newBody, data) : newBody;\n    }\n    case \"patch-by-heading\": {\n      if (!u.heading) throw new Error(\"patch-by-heading requires heading\");\n      return patchByHeadingInMemory(existing, u.heading, u.content);\n    }\n  }\n}\n\nfunction patchByHeadingInMemory(content: string, heading: string, newContent: string): string {\n  const lines = content.split(\"\\n\");\n  const re = new RegExp(`^#{1,6}\\\\s+${heading.replace(/[.*+?^${}()|[\\]\\\\]/g, \"\\\\$&\")}\\\\s*$`, \"i\");\n  let idx = -1;\n  let level = 0;\n  for (let i = 0; i < lines.length; i++) {\n    if (re.test(lines[i])) {\n      idx = i;\n      const m = lines[i].match(/^(#{1,6})\\s+/);\n      level = m ? m[1].length : 1;\n      break;\n    }\n  }\n  if (idx === -1) throw new Error(`Heading not found: ${heading}`);\n  let end = lines.length;\n  for (let i = idx + 1; i < lines.length; i++) {\n    const m = lines[i].match(/^(#{1,6})\\s+/);\n    if (m && m[1].length <= level) {\n      end = i;\n      break;\n    }\n  }\n  return [...lines.slice(0, idx + 1), \"\", newContent, \"\", ...lines.slice(end)].join(\"\\n\");\n}\n","import { basename } from \"node:path\";\nimport type { ChangeSet, PatchCreate, PatchUpdate } from \"./patch.js\";\n\nexport interface SynthesizeNoteInput {\n  topic: string;\n  answer: string;\n  suggested_path: string;\n  type?: string;\n  sources?: string[];\n  derived_from?: string[];\n  related_notes?: string[];\n  status?: string;\n  confidence?: string;\n  decision_maker?: string;\n  decided_on?: string;\n  severity?: string;\n  /** Verbatim symptom phrases (the user's own words) — symptom-keyed for retrieval. */\n  symptoms?: string[];\n  extra_frontmatter?: Record<string, unknown>;\n  /**\n   * When true, the resulting note is filed under `proposals/<date>-<slug>.md` with\n   * `status: proposal` frontmatter, regardless of `suggested_path`. The original path\n   * is preserved as `proposed_target` in frontmatter so `synthesize_promote` knows\n   * where to move it on acceptance.\n   */\n  proposal?: boolean;\n  /**\n   * When provided alongside `proposal: true`, used as the proposal subdirectory name.\n   * Defaults to \"proposals\". Useful for callers that want to segregate by source\n   * (e.g. \"proposals/research\", \"proposals/outage\").\n   */\n  proposal_subdir?: string;\n}\n\nexport interface SynthesizePreview {\n  changeset: ChangeSet;\n  path: string;\n  title: string;\n  /** True when the preview is a proposal — caller (or `synthesize_promote`) must move it later. */\n  is_proposal?: boolean;\n  /** When `is_proposal` is true, the canonical path that `synthesize_promote` should move it to. */\n  proposed_target?: string;\n}\n\n/**\n * Convert a query answer + provenance into a ChangeSet that can be fed to applyPatch.\n * The shaped note includes provenance frontmatter and auto-inserts [[wikilinks]] for\n * any related_notes that appear as bare titles in the body.\n *\n * Does NOT write to disk — always returns a ChangeSet. Callers pass it to applyPatch.\n *\n * Proposal mode: when `proposal: true`, the path is rewritten to\n * `<proposal_subdir>/<YYYY-MM-DD>-<slug>.md`, the `status` is forced to `proposal`,\n * and `proposed_target` records the original suggested path. `synthesize_promote`\n * later moves the file to that target and clears the proposal frontmatter.\n */\nexport function buildSynthesizeChangeSet(input: SynthesizeNoteInput): SynthesizePreview {\n  const today = new Date().toISOString().slice(0, 10);\n  const title = input.topic.trim();\n  const canonicalPath = input.suggested_path.endsWith(\".md\") ? input.suggested_path : input.suggested_path + \".md\";\n\n  const isProposal = input.proposal === true;\n  const subdir = (input.proposal_subdir ?? \"proposals\").replace(/\\/+$/, \"\");\n  const slug = slugForTopic(title);\n  const path = isProposal ? `${subdir}/${today}-${slug}.md` : canonicalPath;\n\n  const frontmatter: Record<string, unknown> = {\n    title,\n    type: input.type ?? \"note\",\n    status: isProposal ? \"proposal\" : (input.status ?? \"active\"),\n    last_verified: today,\n    confidence: input.confidence ?? \"medium\",\n    ...(input.sources && input.sources.length > 0 && { sources: input.sources }),\n    ...(input.derived_from && input.derived_from.length > 0 && { derived_from: input.derived_from }),\n    ...(input.decision_maker && { decision_maker: input.decision_maker }),\n    ...(input.decided_on && { decided_on: input.decided_on }),\n    ...(input.severity && { severity: input.severity }),\n    ...(input.symptoms && input.symptoms.length > 0 && { symptoms: input.symptoms }),\n    ...(isProposal && { proposed_target: canonicalPath }),\n    ...(input.extra_frontmatter ?? {}),\n  };\n\n  const body = buildBody(title, input.answer, input.related_notes ?? []);\n\n  const create: PatchCreate = { path, content: body, frontmatter };\n  const changeset: ChangeSet = { creates: [create] };\n\n  return {\n    changeset,\n    path,\n    title,\n    ...(isProposal && { is_proposal: true, proposed_target: canonicalPath }),\n  };\n}\n\nfunction slugForTopic(topic: string): string {\n  return topic\n    .toLowerCase()\n    .replace(/[^a-z0-9]+/g, \"-\")\n    .replace(/^-+|-+$/g, \"\")\n    .slice(0, 60) || \"untitled\";\n}\n\nfunction buildBody(title: string, answer: string, relatedNotes: string[]): string {\n  let body = `# ${title}\\n\\n${answer.trim()}\\n`;\n\n  if (relatedNotes.length > 0) {\n    body = autoWikilink(body, relatedNotes);\n    const links = relatedNotes.map((r) => `- [[${wikilinkName(r)}]]`).join(\"\\n\");\n    body += `\\n## Related\\n\\n${links}\\n`;\n  }\n\n  return body;\n}\n\n/**\n * For each related note, replace the first bare occurrence of its title in the body\n * with a [[wikilink]]. Conservative — only replaces whole-word matches outside code blocks.\n */\nfunction autoWikilink(body: string, relatedNotes: string[]): string {\n  // Skip content inside fenced code blocks\n  const parts = body.split(/(```[\\s\\S]*?```)/g);\n  return parts\n    .map((part, i) => {\n      if (i % 2 === 1) return part; // code block\n      let out = part;\n      for (const r of relatedNotes) {\n        const name = wikilinkName(r);\n        if (/[\\[\\]]/.test(out) && out.includes(`[[${name}]]`)) continue; // already linked\n        const escaped = name.replace(/[.*+?^${}()|[\\]\\\\]/g, \"\\\\$&\");\n        const re = new RegExp(`\\\\b${escaped}\\\\b`, \"i\");\n        out = out.replace(re, `[[${name}]]`);\n      }\n      return out;\n    })\n    .join(\"\");\n}\n\nfunction wikilinkName(pathOrName: string): string {\n  // \"decisions/auth-migration.md\" → \"auth-migration\"\n  // \"Auth Migration\" → \"Auth Migration\"\n  const base = basename(pathOrName).replace(/\\.md$/, \"\");\n  return base;\n}\n\nexport interface PromoteInput {\n  /**\n   * Path to the proposal note (relative to vault root). Must have `status: proposal` frontmatter\n   * AND `proposed_target` frontmatter, both written by `buildSynthesizeChangeSet` in proposal mode.\n   */\n  proposal_path: string;\n  /**\n   * Optional override for the destination path. When omitted, the proposal's own\n   * `proposed_target` frontmatter is used.\n   */\n  target_path?: string;\n}\n\nexport interface PromotePreview {\n  changeset: ChangeSet;\n  from: string;\n  to: string;\n}\n\n/**\n * Promote a reviewed proposal to its canonical destination.\n *\n * Reads the proposal's existing content + frontmatter, strips `status: proposal` and\n * `proposed_target` keys, restores the original status (default \"active\"), and returns\n * a ChangeSet that:\n *   - creates the canonical path with the cleaned frontmatter + body\n *   - deletes the proposal path\n *\n * The caller (the MCP tool) reads the proposal file, runs this builder, and applies the\n * resulting changeset via applyPatch — preserving atomicity and rollback semantics.\n */\nexport function buildPromoteChangeSet(input: {\n  proposal_path: string;\n  target_path?: string;\n  body: string;\n  frontmatter: Record<string, unknown>;\n}): PromotePreview {\n  const fm = { ...input.frontmatter };\n  const target = input.target_path ?? (typeof fm.proposed_target === \"string\" ? fm.proposed_target : undefined);\n  if (!target) {\n    throw new Error(\n      `Cannot promote ${input.proposal_path}: no target_path provided and no 'proposed_target' frontmatter on the proposal.`\n    );\n  }\n  // Restore canonical status (default \"active\") and strip proposal markers.\n  if (fm.status === \"proposal\") fm.status = \"active\";\n  delete fm.proposed_target;\n\n  const create: PatchCreate = {\n    path: target,\n    content: input.body,\n    frontmatter: fm,\n  };\n  const changeset: ChangeSet = {\n    creates: [create],\n    deletes: [{ path: input.proposal_path }],\n  };\n\n  return { changeset, from: input.proposal_path, to: target };\n}\n","import { readFile, writeFile } from \"node:fs/promises\";\nimport { existsSync } from \"node:fs\";\nimport { join } from \"node:path\";\n\nconst BEGIN_MARKER = \"<!-- semantic-memory:begin contract -->\";\nconst END_MARKER = \"<!-- semantic-memory:end contract -->\";\nconst LOCAL_NOTES_HEADING = \"## Local Notes\";\n\nexport interface ToolSummary {\n  name: string;\n  description: string;\n  deprecated?: boolean;\n}\n\nexport interface ModeSummary {\n  name: string;\n  description: string;\n  isDefault?: boolean;\n}\n\nexport interface RegenerateContractOptions {\n  projectRoot: string;\n  pluginVersion: string;\n  tools: ToolSummary[];\n  modes?: ModeSummary[];\n  /** When true, overwrite hand-edited managed blocks. Default false → fails loudly on detected hand-edits. */\n  force?: boolean;\n  /** Override \"now\" — used by tests for deterministic timestamps. */\n  nowIso?: string;\n}\n\nexport interface RegenerateContractResult {\n  path: string;\n  written: boolean;\n  reason?: string;\n  hand_edit_detected?: boolean;\n  preserved_local_notes_chars?: number;\n}\n\n/**\n * Generate or refresh AGENTS.md at the project root.\n *\n * Behavior:\n *  - If AGENTS.md is absent, write the full contract + an empty Local Notes section.\n *  - If AGENTS.md exists and contains the managed block markers:\n *      * Regenerate the content INSIDE the markers from the current tool/mode inventory.\n *      * Preserve everything OUTSIDE the markers (Local Notes tail, custom sections, frontmatter the\n *        user added).\n *      * If `force` is false and the inside-block content differs from a freshly-generated block AND\n *        the difference is not just a regenerable timestamp/version, fail with hand_edit_detected.\n *  - If AGENTS.md exists without managed-block markers, refuse and report — the user has a custom\n *    AGENTS.md and we should not silently take it over.\n */\nexport async function regenerateAgentsContract(opts: RegenerateContractOptions): Promise<RegenerateContractResult> {\n  const path = join(opts.projectRoot, \"AGENTS.md\");\n  const generatedBlock = buildManagedBlock(opts);\n  const generatedFull = buildFullDocument(opts, generatedBlock);\n\n  if (!existsSync(path)) {\n    await writeFile(path, generatedFull, \"utf-8\");\n    return { path, written: true };\n  }\n\n  const existing = await readFile(path, \"utf-8\");\n  const beginIdx = existing.indexOf(BEGIN_MARKER);\n  const endIdx = existing.indexOf(END_MARKER);\n\n  if (beginIdx === -1 || endIdx === -1 || endIdx < beginIdx) {\n    return {\n      path,\n      written: false,\n      reason:\n        \"AGENTS.md exists but does not contain the semantic-memory managed-block markers. Move your existing content into a Local Notes section outside the managed block, or delete AGENTS.md and re-run to bootstrap from scratch.\",\n    };\n  }\n\n  const existingBlock = existing.slice(beginIdx, endIdx + END_MARKER.length);\n  const localTail = extractLocalTail(existing, endIdx + END_MARKER.length);\n\n  if (!opts.force && hasHandEdits(existingBlock, generatedBlock)) {\n    return {\n      path,\n      written: false,\n      hand_edit_detected: true,\n      reason:\n        \"Managed-block content has been hand-edited. Move your changes to the Local Notes section (outside the managed block) and re-run, or pass force=true to overwrite.\",\n    };\n  }\n\n  // Refresh the entire pre-block prefix (frontmatter + title) so timestamp/version\n  // stamps reflect the current regeneration. Keep the managed block fresh and the\n  // Local Notes tail untouched.\n  const newPrefix = buildPrefix(opts);\n  const newDoc = newPrefix + generatedBlock + localTail;\n  await writeFile(path, newDoc, \"utf-8\");\n  return {\n    path,\n    written: true,\n    preserved_local_notes_chars: localTail.length,\n  };\n}\n\nfunction buildPrefix(opts: RegenerateContractOptions): string {\n  return [\n    \"---\",\n    `generated_by: semantic-memory`,\n    `version: ${opts.pluginVersion}`,\n    `last_generated: ${opts.nowIso ?? new Date().toISOString()}`,\n    \"---\",\n    \"\",\n    \"# Project Agent Contract\",\n    \"\",\n  ].join(\"\\n\");\n}\n\nfunction buildFullDocument(opts: RegenerateContractOptions, managedBlock: string): string {\n  const localNotes = `\\n\\n${LOCAL_NOTES_HEADING}\\n\\n_User-authored content lives here. Preserved across \\`regenerate_contract\\` runs._\\n`;\n  return buildPrefix(opts) + managedBlock + localNotes;\n}\n\nfunction buildManagedBlock(opts: RegenerateContractOptions): string {\n  const lines: string[] = [BEGIN_MARKER, \"\"];\n\n  lines.push(\"## Active Modes\", \"\");\n  const modes = opts.modes ?? defaultModes();\n  for (const m of modes) {\n    const tag = m.isDefault ? \" (default)\" : \"\";\n    lines.push(`- **${m.name}**${tag} — ${m.description}`);\n  }\n  lines.push(\"\");\n\n  lines.push(\"## Required Workflow\", \"\");\n  lines.push(\"1. For multi-step work that needs verification, open a session: `session_start({task})`.\");\n  lines.push(\"2. Use mode-aware retrieval: `search_hybrid`, `read_note`, `list_notes`, `backlinks`/`forwardlinks`.\");\n  lines.push(\"3. Make durable updates via `apply_patch` or `synthesize_note` — never bypass the patch layer for multi-note edits.\");\n  lines.push(\"4. Run verification commands inside a session: `session_run({cmd})`.\");\n  lines.push(\"5. Close with `session_finish({summary})` — refused without verification unless explicitly waived.\");\n  lines.push(\"6. Lint regularly: `lint_vault({checks: ['schema','provenance','stale','broken_links']})`.\");\n  lines.push(\"\");\n\n  lines.push(\"## Tool Surface\", \"\");\n  const live = opts.tools.filter((t) => !t.deprecated);\n  const deprecated = opts.tools.filter((t) => t.deprecated);\n  for (const t of live) {\n    lines.push(`- \\`${t.name}\\` — ${stripDeprecationPrefix(t.description)}`);\n  }\n  if (deprecated.length > 0) {\n    lines.push(\"\");\n    lines.push(\"### Deprecated (removed in v2.0.0)\", \"\");\n    for (const t of deprecated) {\n      lines.push(`- \\`${t.name}\\` — ${stripDeprecationPrefix(t.description)}`);\n    }\n  }\n  lines.push(\"\");\n\n  lines.push(\"## Memory Policy\", \"\");\n  lines.push(\"- Markdown is canonical. The vault under `.claude/.vault/` (or wherever `--notes` points) is the source of truth.\");\n  lines.push(\"- Indexes (vector / graph / FTS) are derived state — rebuildable via `reindex` without losing knowledge.\");\n  lines.push(\"- Provenance frontmatter is required for `note`/`decision`/`gotcha` types — `sources` (external) or `derived_from` (internal).\");\n  lines.push(\"- Mode router lives at `.claude/.semantic-memory/mode` (legacy `.claude/.sidekick-mode` still readable through v1.x); explicit `/mode` is ground truth.\");\n  lines.push(\"\");\n\n  lines.push(END_MARKER);\n  return lines.join(\"\\n\");\n}\n\nfunction defaultModes(): ModeSummary[] {\n  return [\n    { name: \"vault-first\", description: \"Project-scoped prose questions trigger vault consultation with cite-or-deflect.\", isDefault: true },\n    { name: \"research\", description: \"Every source introduced is filed via `ingest_source`; mandatory `synthesize_note` on exit.\" },\n    { name: \"outage-silence\", description: \"No proactive vault search. Terse responses. Postmortem `synthesize_note` on exit.\" },\n  ];\n}\n\nfunction stripDeprecationPrefix(description: string): string {\n  return description.replace(/^\\[DEPRECATED[^\\]]*\\]\\s*/, \"(deprecated) \");\n}\n\nfunction extractLocalTail(existing: string, afterEndIdx: number): string {\n  const tail = existing.slice(afterEndIdx);\n  // Trim a single leading blank-line-then-newline if present so we don't double-space across regenerations.\n  return tail;\n}\n\n/**\n * Detect hand-edits by comparing semantic content of the managed block, ignoring lines that are\n * regenerable (currently no per-block timestamps live inside the block — they're in frontmatter).\n * Returns true if the existing block diverges from what we'd generate now.\n */\nfunction hasHandEdits(existingBlock: string, generatedBlock: string): boolean {\n  return existingBlock.trim() !== generatedBlock.trim();\n}\n\n/**\n * Inspect AGENTS.md without modifying it. Returns whether the file exists, whether it has managed\n * markers, and how many characters of Local Notes tail are preserved.\n */\nexport async function inspectAgentsContract(projectRoot: string): Promise<{\n  path: string;\n  exists: boolean;\n  has_managed_block: boolean;\n  local_notes_chars: number;\n}> {\n  const path = join(projectRoot, \"AGENTS.md\");\n  if (!existsSync(path)) {\n    return { path, exists: false, has_managed_block: false, local_notes_chars: 0 };\n  }\n  const raw = await readFile(path, \"utf-8\");\n  const beginIdx = raw.indexOf(BEGIN_MARKER);\n  const endIdx = raw.indexOf(END_MARKER);\n  if (beginIdx === -1 || endIdx === -1) {\n    return { path, exists: true, has_managed_block: false, local_notes_chars: 0 };\n  }\n  const localTail = raw.slice(endIdx + END_MARKER.length).trim();\n  return { path, exists: true, has_managed_block: true, local_notes_chars: localTail.length 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